AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0417780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0417780 MtrunA17_Chr3g0115271 97.311 595 14 1 14 608 1 593 0.0 1197
Msa0417780 MtrunA17_Chr5g0424931 44.846 553 250 14 32 573 19 527 5.26e-146 432
Msa0417780 MtrunA17_Chr2g0326761 43.494 561 281 14 28 569 7 550 2.55e-129 395
Msa0417780 MtrunA17_Chr5g0417281 40.598 569 261 14 29 577 8 519 7.12e-128 386
Msa0417780 MtrunA17_Chr7g0264171 42.857 525 249 16 28 516 27 536 1.84e-124 380
Msa0417780 MtrunA17_Chr4g0028971 47.991 448 215 10 29 463 9 451 2.94e-124 382
Msa0417780 MtrunA17_Chr1g0181211 41.426 589 288 18 29 588 24 584 9.18e-122 375
Msa0417780 MtrunA17_Chr1g0199681 43.340 473 200 13 29 463 91 533 2.62e-118 367
Msa0417780 MtrunA17_Chr1g0178011 37.085 542 221 12 20 554 3 431 3.89e-107 330
Msa0417780 MtrunA17_Chr5g0436761 39.696 461 220 9 23 475 3 413 1.05e-99 311
Msa0417780 MtrunA17_Chr2g0277461 35.856 555 240 15 24 571 5 450 1.55e-98 308
Msa0417780 MtrunA17_Chr2g0289221 44.475 362 143 8 22 375 10 321 1.53e-91 286
Msa0417780 MtrunA17_Chr5g0417211 44.011 359 150 8 22 375 2 314 1.06e-89 283
Msa0417780 MtrunA17_Chr7g0264161 43.658 339 147 7 42 375 2 301 2.45e-85 268
Msa0417780 MtrunA17_Chr5g0424741 33.099 568 249 19 29 523 9 518 6.70e-75 248
Msa0417780 MtrunA17_Chr2g0277531 39.665 358 149 14 29 375 17 318 5.84e-72 234
Msa0417780 MtrunA17_Chr5g0424801 35.897 390 182 11 29 406 9 342 8.64e-70 230
Msa0417780 MtrunA17_Chr5g0425261 36.579 380 177 10 29 396 9 336 8.03e-69 228
Msa0417780 MtrunA17_Chr8g0376771 37.778 405 199 8 20 412 11 374 1.06e-68 239
Msa0417780 MtrunA17_Chr2g0276781 37.755 392 201 8 29 414 20 374 1.47e-68 235
Msa0417780 MtrunA17_Chr2g0282961 34.804 408 216 5 18 414 39 407 3.52e-68 233
Msa0417780 MtrunA17_Chr2g0285461 37.656 401 206 7 20 412 11 375 1.52e-67 236
Msa0417780 MtrunA17_Chr4g0009751 36.387 393 201 8 30 414 17 368 8.56e-66 226
Msa0417780 MtrunA17_Chr1g0156321 38.832 394 185 11 28 410 39 387 4.09e-65 229
Msa0417780 MtrunA17_Chr3g0109391 36.990 392 203 7 29 412 23 378 6.57e-65 228
Msa0417780 MtrunA17_Chr5g0433301 36.735 392 204 7 29 412 21 376 3.86e-64 226
Msa0417780 MtrunA17_Chr8g0385791 34.491 432 219 9 32 440 59 449 4.78e-64 225
Msa0417780 MtrunA17_Chr4g0046371 35.750 400 199 9 32 414 38 396 1.25e-62 219
Msa0417780 MtrunA17_Chr7g0239061 34.910 444 237 15 29 460 11 414 5.27e-62 217
Msa0417780 MtrunA17_Chr4g0070181 35.696 381 196 6 28 399 19 359 1.50e-60 218
Msa0417780 MtrunA17_Chr2g0326281 35.468 406 193 10 32 410 56 419 2.33e-59 212
Msa0417780 MtrunA17_Chr4g0029671 33.920 398 213 7 32 414 54 416 1.07e-57 207
Msa0417780 MtrunA17_Chr8g0346711 35.459 392 207 9 29 414 26 377 2.01e-57 204
Msa0417780 MtrunA17_Chr5g0425661 48.515 202 96 4 24 220 29 227 3.62e-54 184
Msa0417780 MtrunA17_Chr2g0301251 45.161 217 106 3 29 236 20 232 6.99e-54 198
Msa0417780 MtrunA17_Chr8g0389081 45.370 216 112 4 24 233 24 239 1.52e-50 188
Msa0417780 MtrunA17_Chr8g0389081 40.625 96 55 2 301 395 272 366 4.74e-11 66.2
Msa0417780 MtrunA17_Chr8g0356211 28.626 262 148 6 138 399 2 224 4.42e-30 120
Msa0417780 MtrunA17_Chr5g0425651 40.625 128 59 4 290 408 2 121 2.87e-24 98.2
Msa0417780 MtrunA17_Chr5g0424791 39.865 148 77 4 81 226 14 151 8.77e-22 92.0
Msa0417780 MtrunA17_Chr5g0419861 41.379 116 57 5 69 177 11 122 4.31e-14 69.7
Msa0417780 MtrunA17_Chr1g0178071 36.752 117 68 4 118 230 65 179 4.12e-12 67.8
Msa0417780 MtrunA17_Chr4g0072581 70.213 47 13 1 200 245 5 51 1.04e-11 60.8
Msa0417780 MtrunA17_Chr8g0345771 36.364 110 65 2 125 230 167 275 2.09e-11 66.6
Msa0417780 MtrunA17_Chr5g0422501 33.051 118 71 3 110 220 217 333 7.84e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0417780 AT1G77850.2 47.950 561 269 11 25 575 12 559 4.08e-164 482
Msa0417780 AT1G77850.1 47.950 561 269 11 25 575 12 559 4.18e-164 481
Msa0417780 AT4G30080.1 42.376 564 284 14 29 574 16 556 1.17e-121 375
Msa0417780 AT2G28350.2 46.389 457 209 10 28 460 6 450 1.04e-119 370
Msa0417780 AT2G28350.1 46.389 457 209 10 28 460 6 450 1.99e-119 370
Msa0417780 AT5G37020.2 37.101 407 211 8 29 426 19 389 1.04e-69 240
Msa0417780 AT5G37020.1 37.101 407 211 8 29 426 19 389 2.86e-69 240
Msa0417780 AT1G30330.3 38.366 404 201 8 21 412 10 377 1.10e-68 240
Msa0417780 AT1G30330.2 38.366 404 201 8 21 412 10 377 1.10e-68 240
Msa0417780 AT1G30330.1 38.250 400 203 7 21 412 12 375 1.47e-68 240
Msa0417780 AT2G33860.1 33.983 462 244 8 32 473 54 474 1.70e-68 234
Msa0417780 AT1G59750.4 37.692 390 198 10 32 414 22 373 6.35e-66 228
Msa0417780 AT1G59750.2 37.692 390 198 10 32 414 22 373 7.75e-66 228
Msa0417780 AT1G59750.1 37.692 390 198 10 32 414 22 373 7.77e-66 228
Msa0417780 AT1G59750.3 37.692 390 198 10 32 414 22 373 7.77e-66 228
Msa0417780 AT2G46530.1 35.714 406 208 9 25 419 14 377 2.95e-63 219
Msa0417780 AT4G23980.2 36.702 376 187 10 29 395 9 342 5.28e-63 219
Msa0417780 AT4G23980.1 36.702 376 187 10 29 395 9 342 7.36e-63 219
Msa0417780 AT2G46530.3 35.309 405 211 8 25 419 35 398 9.25e-63 218
Msa0417780 AT5G60450.2 34.670 424 222 9 25 432 34 418 3.23e-62 220
Msa0417780 AT5G60450.1 35.012 417 216 9 32 432 65 442 2.55e-61 218
Msa0417780 AT1G19850.2 37.468 395 188 12 29 410 40 388 3.09e-61 219
Msa0417780 AT1G19850.1 37.468 395 188 12 29 410 51 399 3.61e-61 219
Msa0417780 AT3G61830.1 34.726 383 206 6 29 406 22 365 1.62e-60 212
Msa0417780 AT5G62000.4 33.487 433 222 10 32 440 61 451 8.24e-60 214
Msa0417780 AT5G62000.2 33.487 433 222 10 32 440 61 451 8.30e-60 214
Msa0417780 AT5G62000.5 33.487 433 222 10 32 440 61 451 8.30e-60 214
Msa0417780 AT5G62000.3 33.487 433 222 10 32 440 61 451 8.30e-60 214
Msa0417780 AT5G62000.1 33.487 433 222 10 32 440 61 451 8.30e-60 214
Msa0417780 AT1G35520.1 31.481 486 257 15 24 478 19 459 1.10e-56 201
Msa0417780 AT1G34410.1 32.083 480 246 18 32 478 27 459 1.27e-55 199
Msa0417780 AT1G34310.1 34.761 397 204 11 32 419 27 377 3.56e-55 197
Msa0417780 AT1G35240.1 34.596 396 202 12 32 417 27 375 9.03e-55 196
Msa0417780 AT1G19220.1 45.161 217 106 3 29 236 20 232 4.89e-54 199
Msa0417780 AT5G20730.1 45.161 217 106 3 29 236 21 233 3.71e-53 197
Msa0417780 AT5G20730.2 45.161 217 106 3 29 236 21 233 4.06e-53 196
Msa0417780 AT5G20730.3 45.161 217 106 3 29 236 21 233 4.56e-53 196
Msa0417780 AT1G34390.1 33.753 397 206 12 32 419 27 375 2.35e-52 189
Msa0417780 AT2G33860.2 35.028 354 182 6 130 473 2 317 9.59e-52 184
Msa0417780 AT1G35540.1 33.165 395 213 11 32 419 27 377 2.91e-51 187
Msa0417780 AT5G37020.3 38.000 300 147 6 130 426 31 294 6.27e-51 187
Msa0417780 AT3G61830.2 34.545 330 177 5 77 406 24 314 1.13e-48 178
Msa0417780 AT1G34170.1 30.548 383 206 11 27 397 20 354 6.06e-45 167
Msa0417780 AT2G46530.2 35.786 299 144 8 127 419 34 290 1.61e-42 160
Msa0417780 ATMG00940.1 50.000 154 71 3 217 370 1 148 3.94e-39 141
Msa0417780 AT1G34170.2 28.982 383 186 11 27 397 20 328 8.69e-39 149
Msa0417780 AT1G34170.3 28.982 383 186 11 27 397 20 328 3.51e-38 149
Msa0417780 AT1G43950.1 38.725 204 111 7 32 229 27 222 1.13e-34 131
Msa0417780 AT3G61970.1 34.454 119 73 3 117 230 9 127 1.55e-12 69.3
Msa0417780 AT2G36080.3 37.273 110 65 2 125 230 33 142 2.71e-12 67.4
Msa0417780 AT2G36080.4 37.273 110 65 2 125 230 33 142 3.47e-12 65.5
Msa0417780 AT2G36080.2 37.273 110 65 2 125 230 33 142 3.47e-12 65.5
Msa0417780 AT2G36080.1 37.273 110 65 2 125 230 33 142 3.52e-12 67.4
Msa0417780 AT2G46870.1 33.071 127 79 2 124 245 29 154 2.04e-11 65.9
Msa0417780 AT4G01500.1 38.542 96 50 2 126 218 32 121 2.59e-11 65.9
Msa0417780 AT1G01030.1 33.613 119 73 2 116 229 42 159 2.68e-11 65.9
Msa0417780 AT1G01030.2 33.613 119 73 2 116 229 42 159 2.99e-11 65.9
Msa0417780 AT3G25730.1 34.314 102 63 2 130 227 183 284 8.78e-11 64.3

Find 210 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATTGTTCAGAACTTTAT+TGG 0.164550 3_2:+65103571 Msa0417780:intron
CCTCAACTGTTGAGGCTATT+TGG 0.202921 3_2:-65102971 None:intergenic
CCTGTAACGTTTCAGCTATT+TGG 0.208521 3_2:+65102789 Msa0417780:CDS
GAAACTAAGTATGTAATATT+TGG 0.249464 3_2:+65103886 Msa0417780:three_prime_UTR
TCATTGTTCAGAACTTTATT+GGG 0.286084 3_2:+65103572 Msa0417780:intron
CTGTTCCTGATCGTGGGGCT+TGG 0.289614 3_2:+65101271 Msa0417780:CDS
GCGATAGCTCGCCAGAGTTT+GGG 0.291734 3_2:-65100289 None:intergenic
AAAAGGACTAGAGGGGTATC+TGG 0.298766 3_2:+65102411 Msa0417780:CDS
GGCGATAGCTCGCCAGAGTT+TGG 0.304479 3_2:-65100290 None:intergenic
AAATCCCCTCCGTCAATTCT+AGG 0.308448 3_2:+65100326 Msa0417780:CDS
TCCTCCGTTGGATTATAGTA+TGG 0.314074 3_2:+65100666 Msa0417780:CDS
TCCGGTGGCGGTTGCGGAGG+CGG 0.344489 3_2:+65101050 Msa0417780:CDS
CAGAGTAGTTTGCCTTCCTT+TGG 0.347823 3_2:+65102720 Msa0417780:CDS
TTTGTTTGTCTTATTGAAAC+CGG 0.362279 3_2:+65103856 Msa0417780:three_prime_UTR
TGATAACTTCCGTCTTTGTA+TGG 0.363524 3_2:+65102599 Msa0417780:CDS
TTGGAAGTTTGCAACACTTC+AGG 0.367022 3_2:-65102318 None:intergenic
TCCAGGACTACTTGGTTTCA+AGG 0.368052 3_2:+65101231 Msa0417780:CDS
GGCGGCGGAAATGGCAGCAC+AGG 0.371956 3_2:+65101068 Msa0417780:CDS
GGTTGCGGAGGCGGCGGAAA+TGG 0.372996 3_2:+65101059 Msa0417780:CDS
TGGAGACTGATGATTCTTCC+AGG 0.375310 3_2:+65101214 Msa0417780:CDS
CCAAATAGCTGAAACGTTAC+AGG 0.375667 3_2:-65102789 None:intergenic
CTGCTGGCATGCAGGGAGCC+AGG 0.375982 3_2:+65102535 Msa0417780:CDS
ATACTTAGTTTCATTGTTCC+CGG 0.381218 3_2:-65103875 None:intergenic
TTGGAGACGGTGGTAGTACT+TGG 0.385584 3_2:-65100246 None:intergenic
TTTGGCAGCAACACAGTGCC+GGG 0.386977 3_2:+65102630 Msa0417780:CDS
CTTTGTATGGGTAACTCCTT+TGG 0.387691 3_2:+65102612 Msa0417780:CDS
TTGTTGATTACTGATGTTCA+TGG 0.389456 3_2:+65100706 Msa0417780:CDS
GTTTCAAGGTGTAGTGTCTC+AGG 0.398107 3_2:+65101245 Msa0417780:CDS
CTGGCTCCCTGCATGCCAGC+AGG 0.411242 3_2:-65102534 None:intergenic
AGGTTTCTGTTCCTGATCGT+GGG 0.413423 3_2:+65101265 Msa0417780:CDS
TTCTATATAAATCCAACAGC+GGG 0.416347 3_2:-65103987 None:intergenic
GTGAACCCTGTGATAGAAAA+GGG 0.417152 3_2:-65102459 None:intergenic
CGCCGGCATTTGTTGACCAC+CGG 0.418386 3_2:+65100769 Msa0417780:CDS
AAATTGCTCGACAGGCTTGA+TGG 0.418640 3_2:+65102942 Msa0417780:CDS
AGCTGAAACGTTACAGGCCC+GGG 0.423670 3_2:-65102783 None:intergenic
ATGATTCTTCCAGGACTACT+TGG 0.424084 3_2:+65101223 Msa0417780:CDS
AGAAGAGGTGAGAGATTGTT+CGG 0.425048 3_2:-65100394 None:intergenic
GTTGTCTCCGGTGGCGGTTG+CGG 0.431234 3_2:+65101044 Msa0417780:CDS
CTGCCAAGGGCTGACCCACT+TGG 0.431622 3_2:-65102337 None:intergenic
CAAGTGGGTCAGCCCTTGGC+AGG 0.434174 3_2:+65102338 Msa0417780:CDS
CAGGTTTCTGTTCCTGATCG+TGG 0.441155 3_2:+65101264 Msa0417780:CDS
GGCAAACTACTCTGGCTCTC+TGG 0.444672 3_2:-65102711 None:intergenic
AGTACTTGGCGGTTCATGAT+TGG 0.452130 3_2:-65100232 None:intergenic
AAATGGCAGCACAGGGGATG+GGG 0.452139 3_2:+65101076 Msa0417780:CDS
AACGCTAAGAAGCTTGTTGC+TGG 0.453003 3_2:+65100808 Msa0417780:CDS
CTAACCAACCATTGTACTCT+AGG 0.453897 3_2:-65103950 None:intergenic
AGTGAACCCTGTGATAGAAA+AGG 0.454541 3_2:-65102460 None:intergenic
GCCGCCTCCGCAACCGCCAC+CGG 0.456465 3_2:-65101051 None:intergenic
GGGGAAGTTGTCTCCGGTGG+CGG 0.456900 3_2:+65101038 Msa0417780:CDS
GGTGGCGGTTGCGGAGGCGG+CGG 0.459780 3_2:+65101053 Msa0417780:CDS
GAAATGGCAGCACAGGGGAT+GGG 0.460169 3_2:+65101075 Msa0417780:CDS
GGAAATGGCAGCACAGGGGA+TGG 0.461216 3_2:+65101074 Msa0417780:CDS
CAAAGGAAGGCAAACTACTC+TGG 0.464413 3_2:-65102719 None:intergenic
TCCTGGAATGAGAATCAAAA+TGG 0.464829 3_2:+65101188 Msa0417780:CDS
GGGGATTTGCACGGCAGCGC+CGG 0.466220 3_2:-65100311 None:intergenic
GGTGGATGAAGAAGAGAAGC+TGG 0.468766 3_2:+65100984 Msa0417780:CDS
AAAGGACTAGAGGGGTATCT+GGG 0.471476 3_2:+65102412 Msa0417780:CDS
CGATCTGTGGAGTGAGAAGT+AGG 0.471915 3_2:+65100962 Msa0417780:CDS
CCTCTCCAAGCCCCACGATC+AGG 0.472164 3_2:-65101276 None:intergenic
CACAGGAGATGACAGCAGTA+AGG 0.472700 3_2:+65102866 Msa0417780:CDS
ACCATTTGAACCACTTTCAA+CGG 0.473718 3_2:-65102835 None:intergenic
ATCGGAGCAAACACCGCCAC+CGG 0.479208 3_2:-65100920 None:intergenic
CCATTTGAACCACTTTCAAC+GGG 0.480213 3_2:-65102834 None:intergenic
CTGATGTTCATGGTTTGACT+TGG 0.481505 3_2:+65100716 Msa0417780:CDS
CTTTGGCAGCAACACAGTGC+CGG 0.482301 3_2:+65102629 Msa0417780:CDS
CCACCGGCGCTACTCCGATT+CGG 0.482322 3_2:-65100904 None:intergenic
CCCGTTGAAAGTGGTTCAAA+TGG 0.482554 3_2:+65102834 Msa0417780:CDS
CTTACTCAAAATTGCTCGAC+AGG 0.482573 3_2:+65102934 Msa0417780:CDS
TCTCAATTTGACCCCGCTGT+TGG 0.485070 3_2:+65103975 Msa0417780:three_prime_UTR
ATTGTTTCTGATAGATTACA+TGG 0.486179 3_2:+65102289 Msa0417780:intron
AATCCCCTCCGTCAATTCTA+GGG 0.486899 3_2:+65100327 Msa0417780:CDS
CGGGAAGGGGAAGTTGTCTC+CGG 0.490275 3_2:+65101032 Msa0417780:CDS
ACCTTGAAACCAAGTAGTCC+TGG 0.491621 3_2:-65101232 None:intergenic
GAGGAAATGAACGGCGGAGA+CGG 0.491674 3_2:-65100443 None:intergenic
GAAGTTATCACCTGGAAAGT+TGG 0.498091 3_2:-65102586 None:intergenic
TCTCATGGCATGAAGTTCAA+TGG 0.498753 3_2:+65103614 Msa0417780:three_prime_UTR
AGAGAAGCTGGTGGATGAGA+AGG 0.506899 3_2:+65100996 Msa0417780:CDS
CTTCCAAGTGGGTCAGCCCT+TGG 0.507741 3_2:+65102334 Msa0417780:CDS
GGGTTCACTAATTCAACAAT+GGG 0.507819 3_2:+65102474 Msa0417780:CDS
ATGCACATAAGTAGCTGTAC+AGG 0.510612 3_2:+65103025 Msa0417780:three_prime_UTR
CTTGGTCCATGTGACCTTGA+GGG 0.511485 3_2:-65100360 None:intergenic
AATCGGAGTAGCGCCGGTGG+CGG 0.511889 3_2:+65100907 Msa0417780:CDS
ACAGGAGATGACAGCAGTAA+GGG 0.514015 3_2:+65102867 Msa0417780:CDS
ATGAGTGTTACTTGGTGTCC+TGG 0.519012 3_2:+65101171 Msa0417780:CDS
GAGACGGTGGTAGTACTTGG+CGG 0.520685 3_2:-65100243 None:intergenic
CTGTTCGATTAGTTCCGAAT+CGG 0.520734 3_2:+65100890 Msa0417780:CDS
TAGCTGAAACGTTACAGGCC+CGG 0.521167 3_2:-65102784 None:intergenic
TAGGGACGAGAGAGAAGAAG+AGG 0.523309 3_2:-65100409 None:intergenic
CTGTTGAGGCTATTTGGCAC+TGG 0.523716 3_2:-65102965 None:intergenic
GAAAGAAGTTCCACCTGCCA+AGG 0.525099 3_2:-65102351 None:intergenic
GTGGGTCAGCCCTTGGCAGG+TGG 0.528173 3_2:+65102341 Msa0417780:CDS
GCGGCGGAAATGGCAGCACA+GGG 0.528509 3_2:+65101069 Msa0417780:CDS
GTGGTGTATTATCCGAGAGC+GGG 0.529625 3_2:+65101105 Msa0417780:CDS
TCTGATGCGAACAACGGTGG+TGG 0.529876 3_2:+65100607 Msa0417780:CDS
GTCTCCGGTGGCGGTTGCGG+AGG 0.531959 3_2:+65101047 Msa0417780:CDS
CTACTTCCCTCAAGGTCACA+TGG 0.532844 3_2:+65100354 Msa0417780:CDS
AACCGGTGGTCAACAAATGC+CGG 0.533689 3_2:-65100771 None:intergenic
AACTGCAACTCAATGAAACC+CGG 0.535247 3_2:+65102765 Msa0417780:CDS
ACAGAACAGCCCGTTGAAAG+TGG 0.538177 3_2:+65102825 Msa0417780:CDS
AACGGAAAATAGATCATGCC+TGG 0.538278 3_2:-65102553 None:intergenic
GAGACGGAGCAGAGAATGTA+GGG 0.539234 3_2:-65100427 None:intergenic
GATAACTTCCGTCTTTGTAT+GGG 0.539535 3_2:+65102600 Msa0417780:CDS
GTAGTAAACCCTAGAATTGA+CGG 0.541390 3_2:-65100335 None:intergenic
GAAAGCGGAGGTTGTGGATG+CGG 0.543290 3_2:+65101146 Msa0417780:CDS
CCCCATTGAAAAGGACTAGA+GGG 0.543634 3_2:+65102403 Msa0417780:CDS
TGTTGACCACCGGTTGGAGT+AGG 0.544509 3_2:+65100779 Msa0417780:CDS
ATAAGGACACTCACTACAGA+TGG 0.545289 3_2:-65103666 None:intergenic
TGATGTTCATGGTTTGACTT+GGG 0.545373 3_2:+65100717 Msa0417780:CDS
AAACTCTGGCGAGCTATCGC+CGG 0.546085 3_2:+65100292 Msa0417780:CDS
AAATCCGACCACCCCGCTCT+CGG 0.548356 3_2:-65101117 None:intergenic
TTATCCGAGAGCGGGGTGGT+CGG 0.550098 3_2:+65101113 Msa0417780:CDS
ATGCGGCGATGAGTGTTACT+TGG 0.550397 3_2:+65101163 Msa0417780:CDS
CCACACTCAACCCCAAACTC+TGG 0.551845 3_2:+65100278 Msa0417780:CDS
TGTTCGGAAGTGAAGTAGCT+TGG 0.552094 3_2:-65100378 None:intergenic
GGAGACGGAGCAGAGAATGT+AGG 0.553295 3_2:-65100428 None:intergenic
GTTCACAAACCTACTCCAAC+CGG 0.553748 3_2:-65100788 None:intergenic
AGGGTTTACTACTTCCCTCA+AGG 0.555346 3_2:+65100346 Msa0417780:CDS
CGGCACTGTGTTGCTGCCAA+AGG 0.556216 3_2:-65102628 None:intergenic
GGCATTTGTTGACCACCGGT+TGG 0.557182 3_2:+65100773 Msa0417780:CDS
TTGTTTGTCTTATTGAAACC+GGG 0.560405 3_2:+65103857 Msa0417780:three_prime_UTR
CCGTCGTCAGCTTCAATCAC+CGG 0.562074 3_2:-65100547 None:intergenic
TGTGTTGAAAGCGGAGGTTG+TGG 0.562873 3_2:+65101140 Msa0417780:CDS
ATCAACAAATTCTGCAACGG+AGG 0.565435 3_2:-65100691 None:intergenic
CAAAGACGGAAGTTATCACC+TGG 0.565893 3_2:-65102594 None:intergenic
CCTGATCGTGGGGCTTGGAG+AGG 0.567198 3_2:+65101276 Msa0417780:CDS
AATGCCGGCGCGGCGTTCCA+CGG 0.569609 3_2:-65100756 None:intergenic
AGGCATTAACAACCCTCTTG+AGG 0.570796 3_2:+65102905 Msa0417780:CDS
TTTACCGTGGAACGCCGCGC+CGG 0.571717 3_2:+65100752 Msa0417780:CDS
AGATTGTGTCTTCCGATCTG+TGG 0.572758 3_2:+65100949 Msa0417780:CDS
ATTTCCTAGAGTACAATGGT+TGG 0.573247 3_2:+65103946 Msa0417780:three_prime_UTR
ACTAGAGGTGCAATGTTCAT+CGG 0.573435 3_2:+65100856 Msa0417780:CDS
GGGCTTGGAGAGGTTCACCT+TGG 0.573691 3_2:+65101286 Msa0417780:CDS
ACAAAATCTGTGCCAAAGGA+AGG 0.573965 3_2:-65102732 None:intergenic
AGGTACTTCTCCACGCAGAC+AGG 0.574972 3_2:+65103800 Msa0417780:intron
GGAAAGGGCGTATGAAGGGA+AGG 0.577013 3_2:-65102381 None:intergenic
ACAGGGGATGGGGTTTGAAG+TGG 0.577463 3_2:+65101086 Msa0417780:CDS
CCACCGTTGTTCGCATCAGA+AGG 0.582707 3_2:-65100604 None:intergenic
ATAAGAAGTAACGGAATCGA+AGG 0.582751 3_2:-65100178 None:intergenic
GTTCCGAATCGGAGTAGCGC+CGG 0.582911 3_2:+65100901 Msa0417780:CDS
CCAGAGTTTGGGGTTGAGTG+TGG 0.583941 3_2:-65100278 None:intergenic
TCAAATGGTACTGTTAGCAC+AGG 0.585129 3_2:+65102849 Msa0417780:CDS
AACGTTGGCAGTTCTCACTC+TGG 0.586514 3_2:+65102678 Msa0417780:CDS
GCTTGGTCCATGTGACCTTG+AGG 0.587306 3_2:-65100361 None:intergenic
TTGAAGCTGACGACGGTGAG+AGG 0.587325 3_2:+65100554 Msa0417780:CDS
CGATAGCTCGCCAGAGTTTG+GGG 0.589326 3_2:-65100288 None:intergenic
GTATCTGGGGTGTTAACTGA+TGG 0.592887 3_2:+65102426 Msa0417780:CDS
GCTTCAATCACCGGAATCCG+TGG 0.594157 3_2:-65100538 None:intergenic
CCGAACAAAATCTGTGCCAA+AGG 0.598966 3_2:-65102736 None:intergenic
CCAAATAGCCTCAACAGTTG+AGG 0.599347 3_2:+65102971 Msa0417780:CDS
AAGCTTAGCGAAAACCTCAT+CGG 0.601270 3_2:-65100479 None:intergenic
CCGAATCGGAGTAGCGCCGG+TGG 0.601878 3_2:+65100904 Msa0417780:CDS
AATGAGAATCAAAATGGCTG+TGG 0.607672 3_2:+65101194 Msa0417780:CDS
GGTTTCTGTTCCTGATCGTG+GGG 0.610340 3_2:+65101266 Msa0417780:CDS
GGTTGAATGAAAATGAGTGA+GGG 0.612055 3_2:-65100211 None:intergenic
AGGGTTCACTAATTCAACAA+TGG 0.612370 3_2:+65102473 Msa0417780:CDS
ATCGAATCAGCACAAAACCT+CGG 0.612548 3_2:-65100640 None:intergenic
GTAATCAACAAATTCTGCAA+CGG 0.612614 3_2:-65100694 None:intergenic
GAGTAAGTCGAATCCTCAAG+AGG 0.613064 3_2:-65102918 None:intergenic
CATACTGCAAGGTCAAAAGA+TGG 0.615276 3_2:-65103824 None:intergenic
AAGGACTAGAGGGGTATCTG+GGG 0.618552 3_2:+65102413 Msa0417780:CDS
CTACTTCTCACTCCACAGAT+CGG 0.620895 3_2:-65100961 None:intergenic
CATTGTTCAGAACTTTATTG+GGG 0.623018 3_2:+65103573 Msa0417780:intron
ACTGCAACTCAATGAAACCC+GGG 0.624047 3_2:+65102766 Msa0417780:CDS
TAATATTTCCTAGAGTACAA+TGG 0.626801 3_2:+65103942 Msa0417780:three_prime_UTR
CGGATCGGCGAGGAAATGAA+CGG 0.627023 3_2:-65100452 None:intergenic
TTGGCAGCAACACAGTGCCG+GGG 0.627502 3_2:+65102631 Msa0417780:CDS
TTAACAGTGAAATCATTCAA+CGG 0.636083 3_2:-65100511 None:intergenic
ATTGACGGAGGGGATTTGCA+CGG 0.638032 3_2:-65100320 None:intergenic
AAGGGCTGCAACGAAACTGA+AGG 0.639246 3_2:+65102885 Msa0417780:CDS
GGATGAAGAAGAGAAGCTGG+TGG 0.642912 3_2:+65100987 Msa0417780:CDS
TTTCTATATAAATCCAACAG+CGG 0.645272 3_2:-65103988 None:intergenic
ATAGCACGCCTCAACTGTTG+AGG 0.645577 3_2:-65102979 None:intergenic
AGTAAGTCGAATCCTCAAGA+GGG 0.645578 3_2:-65102917 None:intergenic
TAAGGACACTCACTACAGAT+GGG 0.646474 3_2:-65103665 None:intergenic
AGGAGTTACCCATACAAAGA+CGG 0.649086 3_2:-65102608 None:intergenic
TGGTTGAATGAAAATGAGTG+AGG 0.649701 3_2:-65100212 None:intergenic
AAAGTACTGTAACTCAACAA+TGG 0.650302 3_2:-65102510 None:intergenic
GATCTGTGGAGTGAGAAGTA+GGG 0.650471 3_2:+65100963 Msa0417780:CDS
CCTTCTGATGCGAACAACGG+TGG 0.652015 3_2:+65100604 Msa0417780:CDS
TTGTTTCTGATAGATTACAT+GGG 0.652931 3_2:+65102290 Msa0417780:intron
AAAGAAGTTCCACCTGCCAA+GGG 0.653496 3_2:-65102350 None:intergenic
GAGTTTCGTCACATTTACCG+TGG 0.654474 3_2:+65100739 Msa0417780:CDS
GAAGGGGAAGTTGTCTCCGG+TGG 0.654859 3_2:+65101035 Msa0417780:CDS
AAAAGATGGTCCTGTCTGCG+TGG 0.657451 3_2:-65103810 None:intergenic
AAAGAAAACAGCATACTGCA+AGG 0.660360 3_2:-65103835 None:intergenic
TAAACCCTAGAATTGACGGA+GGG 0.662879 3_2:-65100331 None:intergenic
TGGTGTATTATCCGAGAGCG+GGG 0.665380 3_2:+65101106 Msa0417780:CDS
GGGGTGTTAACTGATGGAGA+TGG 0.666346 3_2:+65102432 Msa0417780:CDS
CGCCGATCCGAAAACCGATG+AGG 0.668414 3_2:+65100465 Msa0417780:CDS
GTGGTCAACAAATGCCGGCG+CGG 0.669526 3_2:-65100766 None:intergenic
ACTCCTTCTGATGCGAACAA+CGG 0.674390 3_2:+65100601 Msa0417780:CDS
AAGACACAATCTCGACACAT+CGG 0.674917 3_2:-65100938 None:intergenic
CACAAACCTACTCCAACCGG+TGG 0.675418 3_2:-65100785 None:intergenic
CGGCGGAAATGGCAGCACAG+GGG 0.678622 3_2:+65101070 Msa0417780:CDS
TGAACCCTGTGATAGAAAAG+GGG 0.678709 3_2:-65102458 None:intergenic
AGTGTTGCAAACTTCCAAGT+GGG 0.678749 3_2:+65102323 Msa0417780:CDS
CTGTGGAGTGAGAAGTAGGG+TGG 0.681702 3_2:+65100966 Msa0417780:CDS
CCCATTGAAAAGGACTAGAG+GGG 0.682404 3_2:+65102404 Msa0417780:CDS
TGTATTATCCGAGAGCGGGG+TGG 0.682628 3_2:+65101109 Msa0417780:CDS
AGTGGTGTATTATCCGAGAG+CGG 0.685012 3_2:+65101104 Msa0417780:CDS
AAGTGTTGCAAACTTCCAAG+TGG 0.685015 3_2:+65102322 Msa0417780:CDS
AAACCCTAGAATTGACGGAG+GGG 0.688106 3_2:-65100330 None:intergenic
GGATCCATACTATAATCCAA+CGG 0.690465 3_2:-65100670 None:intergenic
GAACTAATCGAACAGCACGA+CGG 0.693501 3_2:-65100882 None:intergenic
CATACATGAAGCATACGCCA+AGG 0.694470 3_2:-65101303 None:intergenic
ATCGGCGAGGAAATGAACGG+CGG 0.707383 3_2:-65100449 None:intergenic
CCGGTGATTGAAGCTGACGA+CGG 0.709175 3_2:+65100547 Msa0417780:CDS
TCCATACTATAATCCAACGG+AGG 0.710511 3_2:-65100667 None:intergenic
TCTATATAAATCCAACAGCG+GGG 0.716621 3_2:-65103986 None:intergenic
GTAAACCCTAGAATTGACGG+AGG 0.732924 3_2:-65100332 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTGAATATATATTTGAT+TGG - chr3_2:65101523-65101542 None:intergenic 10.0%
!!! ATAATTTGATCATATTGATT+AGG + chr3_2:65101398-65101417 Msa0417780:intron 15.0%
!! AAATAGATTAAATATGAGTA+TGG + chr3_2:65101551-65101570 Msa0417780:intron 15.0%
!!! CTATCTAAAATAACTAAAAT+TGG + chr3_2:65102260-65102279 Msa0417780:intron 15.0%
!! AGTATTCTTCATAAAAACAA+CGG - chr3_2:65100839-65100858 None:intergenic 20.0%
!! AATAAAGATTCAAAAGAAAG+AGG - chr3_2:65101332-65101351 None:intergenic 20.0%
!! TGTGCGTTATATAATAATTA+TGG + chr3_2:65101366-65101385 Msa0417780:intron 20.0%
!! AATCTATCAGAAACAATAAA+TGG - chr3_2:65102286-65102305 None:intergenic 20.0%
!! GTCTAATACAAGAAAATAAA+TGG + chr3_2:65103539-65103558 Msa0417780:intron 20.0%
!! AGTTCAATGGATAAAAAAAA+AGG + chr3_2:65103627-65103646 Msa0417780:three_prime_UTR 20.0%
!! GTTCAATGGATAAAAAAAAA+GGG + chr3_2:65103628-65103647 Msa0417780:three_prime_UTR 20.0%
!! TTCAATGGATAAAAAAAAAG+GGG + chr3_2:65103629-65103648 Msa0417780:three_prime_UTR 20.0%
!! ATAAGATGTTCAACAATATA+AGG - chr3_2:65103686-65103705 None:intergenic 20.0%
!!! ATTAATTTTGTTGCTTACTT+TGG + chr3_2:65103764-65103783 Msa0417780:intron 20.0%
!!! TTAATTTTGTTGCTTACTTT+GGG + chr3_2:65103765-65103784 Msa0417780:intron 20.0%
!! GAAACTAAGTATGTAATATT+TGG + chr3_2:65103886-65103905 Msa0417780:three_prime_UTR 20.0%
!! TTTTCGAACATAAGAAGTAA+CGG - chr3_2:65100190-65100209 None:intergenic 25.0%
! TTAACAGTGAAATCATTCAA+CGG - chr3_2:65100514-65100533 None:intergenic 25.0%
!! ATTTCACTGTTAATTTTCCA+CGG + chr3_2:65100521-65100540 Msa0417780:CDS 25.0%
!! GTTTTTATGAAGAATACTAG+AGG + chr3_2:65100841-65100860 Msa0417780:CDS 25.0%
!! AAACATGCATTTTATCTAGT+TGG + chr3_2:65101421-65101440 Msa0417780:intron 25.0%
!!! ACTTAATGTTGCTTTCAAAA+TGG + chr3_2:65101490-65101509 Msa0417780:intron 25.0%
!! TAAGGAAAAATCATTTTGCA+AGG + chr3_2:65101598-65101617 Msa0417780:intron 25.0%
! AGTGTTTATCATCTGTTTAA+AGG + chr3_2:65101704-65101723 Msa0417780:intron 25.0%
! CAACAAATCAAATGTTAACA+TGG - chr3_2:65101745-65101764 None:intergenic 25.0%
! TTTGTTGAATTCAGGAAATT+TGG + chr3_2:65101826-65101845 Msa0417780:intron 25.0%
!! TAGAACATAGAAGTGATTTT+AGG + chr3_2:65101862-65101881 Msa0417780:intron 25.0%
!! GTAAAATTTTGTGAAACCAA+TGG + chr3_2:65101889-65101908 Msa0417780:intron 25.0%
! AAAAAGGAAACGAAAAAACA+AGG - chr3_2:65101985-65102004 None:intergenic 25.0%
!! TGATTTTTCTATATCTGACT+TGG + chr3_2:65102114-65102133 Msa0417780:intron 25.0%
!!! ATTGTTTCTGATAGATTACA+TGG + chr3_2:65102289-65102308 Msa0417780:intron 25.0%
!!! TTGTTTCTGATAGATTACAT+GGG + chr3_2:65102290-65102309 Msa0417780:intron 25.0%
! AAAGTTGGAAAAACTTGAAA+CGG - chr3_2:65102574-65102593 None:intergenic 25.0%
!!! AGTGGATTAATTGATAACAT+AGG + chr3_2:65103257-65103276 Msa0417780:intron 25.0%
!! ATTAATTGATAACATAGGTC+TGG + chr3_2:65103262-65103281 Msa0417780:intron 25.0%
! ATCATGACATATAAAACTCA+AGG - chr3_2:65103294-65103313 None:intergenic 25.0%
! AAAAGTAAATGAAAATGCAG+AGG + chr3_2:65103420-65103439 Msa0417780:intron 25.0%
! AAAGTAAATGAAAATGCAGA+GGG + chr3_2:65103421-65103440 Msa0417780:intron 25.0%
!!! AGTATTGATTTTCTGTTATG+GGG - chr3_2:65103463-65103482 None:intergenic 25.0%
!!! GAGTATTGATTTTCTGTTAT+GGG - chr3_2:65103464-65103483 None:intergenic 25.0%
! TTCATTGTTCAGAACTTTAT+TGG + chr3_2:65103571-65103590 Msa0417780:intron 25.0%
! TCATTGTTCAGAACTTTATT+GGG + chr3_2:65103572-65103591 Msa0417780:intron 25.0%
! GCAACAAAATTAATTGAACA+TGG - chr3_2:65103758-65103777 None:intergenic 25.0%
!! TTTGTTTGTCTTATTGAAAC+CGG + chr3_2:65103856-65103875 Msa0417780:three_prime_UTR 25.0%
! TAATATTTCCTAGAGTACAA+TGG + chr3_2:65103942-65103961 Msa0417780:three_prime_UTR 25.0%
! TTTCTATATAAATCCAACAG+CGG - chr3_2:65103991-65104010 None:intergenic 25.0%
GTAATCAACAAATTCTGCAA+CGG - chr3_2:65100697-65100716 None:intergenic 30.0%
! TTGTTGATTACTGATGTTCA+TGG + chr3_2:65100706-65100725 Msa0417780:CDS 30.0%
AATGCTATATTTGCATGAAG+AGG + chr3_2:65101652-65101671 Msa0417780:intron 30.0%
TTGAATTCAGGAAATTTGGT+TGG + chr3_2:65101830-65101849 Msa0417780:intron 30.0%
TGAATTCAGGAAATTTGGTT+GGG + chr3_2:65101831-65101850 Msa0417780:intron 30.0%
AAACCAATGGATACCATTAT+TGG + chr3_2:65101902-65101921 Msa0417780:intron 30.0%
AACCAATGGATACCATTATT+GGG + chr3_2:65101903-65101922 Msa0417780:intron 30.0%
AATCTCATAAGTCCCAATAA+TGG - chr3_2:65101918-65101937 None:intergenic 30.0%
!!! CGTTTCCTTTTTTTGAAATC+TGG + chr3_2:65101993-65102012 Msa0417780:intron 30.0%
GCAATCCAGATTTCAAAAAA+AGG - chr3_2:65102001-65102020 None:intergenic 30.0%
AGACATAAGAAATCAAAAGC+AGG - chr3_2:65102151-65102170 None:intergenic 30.0%
!! GATTCTTCGTATCATTTTTG+TGG + chr3_2:65102171-65102190 Msa0417780:intron 30.0%
!! AAAGTACTGTAACTCAACAA+TGG - chr3_2:65102513-65102532 None:intergenic 30.0%
!! GTTGAAAAAGATTTTAACCC+CGG - chr3_2:65102651-65102670 None:intergenic 30.0%
!!! GGGGTTAAAATCTTTTTCAA+CGG + chr3_2:65102650-65102669 Msa0417780:CDS 30.0%
AGTGAATCAAAGTTCTCAAT+AGG + chr3_2:65103062-65103081 Msa0417780:intron 30.0%
GTGAATCAAAGTTCTCAATA+GGG + chr3_2:65103063-65103082 Msa0417780:intron 30.0%
!!! GGTATTTTTAGCTGTCTTAT+TGG + chr3_2:65103164-65103183 Msa0417780:intron 30.0%
GTTTGTTCTAATCAAGTGAT+GGG + chr3_2:65103206-65103225 Msa0417780:intron 30.0%
! CTTTCTGTCAATATTTTCCT+AGG - chr3_2:65103366-65103385 None:intergenic 30.0%
TTGACAGAAAGTAGAGAAAA+AGG + chr3_2:65103375-65103394 Msa0417780:intron 30.0%
TGACAGAAAGTAGAGAAAAA+GGG + chr3_2:65103376-65103395 Msa0417780:intron 30.0%
!!! CGAGTATTGATTTTCTGTTA+TGG - chr3_2:65103465-65103484 None:intergenic 30.0%
ATGAGTATTCTCATGTGAAT+AGG + chr3_2:65103497-65103516 Msa0417780:intron 30.0%
CATTGTTCAGAACTTTATTG+GGG + chr3_2:65103573-65103592 Msa0417780:intron 30.0%
GTTGAACATCTTATACTTGT+TGG + chr3_2:65103692-65103711 Msa0417780:intron 30.0%
! TTGTTTGTCTTATTGAAACC+GGG + chr3_2:65103857-65103876 Msa0417780:three_prime_UTR 30.0%
ATACTTAGTTTCATTGTTCC+CGG - chr3_2:65103878-65103897 None:intergenic 30.0%
TTCTATATAAATCCAACAGC+GGG - chr3_2:65103990-65104009 None:intergenic 30.0%
! ATAAGAAGTAACGGAATCGA+AGG - chr3_2:65100181-65100200 None:intergenic 35.0%
GGTTGAATGAAAATGAGTGA+GGG - chr3_2:65100214-65100233 None:intergenic 35.0%
TGGTTGAATGAAAATGAGTG+AGG - chr3_2:65100215-65100234 None:intergenic 35.0%
GTAGTAAACCCTAGAATTGA+CGG - chr3_2:65100338-65100357 None:intergenic 35.0%
! TGTTAATTTTCCACGGATTC+CGG + chr3_2:65100528-65100547 Msa0417780:CDS 35.0%
GGATCCATACTATAATCCAA+CGG - chr3_2:65100673-65100692 None:intergenic 35.0%
! TGATGTTCATGGTTTGACTT+GGG + chr3_2:65100717-65100736 Msa0417780:CDS 35.0%
TCCTGGAATGAGAATCAAAA+TGG + chr3_2:65101188-65101207 Msa0417780:CDS 35.0%
AATGAGAATCAAAATGGCTG+TGG + chr3_2:65101194-65101213 Msa0417780:CDS 35.0%
! TTTGACTGAGAATGCTTTTG+TGG + chr3_2:65101451-65101470 Msa0417780:intron 35.0%
! GTTGCTTTCAAAATGGAATG+TGG + chr3_2:65101497-65101516 Msa0417780:intron 35.0%
TTTGCATGAAGAGGTTGAAA+TGG + chr3_2:65101661-65101680 Msa0417780:intron 35.0%
TTGCATGAAGAGGTTGAAAT+GGG + chr3_2:65101662-65101681 Msa0417780:intron 35.0%
TTGTTCAGTTGCTTCTGTTA+CGG + chr3_2:65101762-65101781 Msa0417780:intron 35.0%
TTCCTGAATTCAACAAAGCA+GGG - chr3_2:65101823-65101842 None:intergenic 35.0%
TTTCCTGAATTCAACAAAGC+AGG - chr3_2:65101824-65101843 None:intergenic 35.0%
AGGAAACGAAAAAACAAGGA+AGG - chr3_2:65101981-65102000 None:intergenic 35.0%
AGGGTTCACTAATTCAACAA+TGG + chr3_2:65102473-65102492 Msa0417780:CDS 35.0%
GGGTTCACTAATTCAACAAT+GGG + chr3_2:65102474-65102493 Msa0417780:CDS 35.0%
! TCAAGTTTTTCCAACTTTCC+AGG + chr3_2:65102576-65102595 Msa0417780:CDS 35.0%
TGATAACTTCCGTCTTTGTA+TGG + chr3_2:65102599-65102618 Msa0417780:CDS 35.0%
GATAACTTCCGTCTTTGTAT+GGG + chr3_2:65102600-65102619 Msa0417780:CDS 35.0%
! TTTTCAACGGATCTAAACGT+TGG + chr3_2:65102663-65102682 Msa0417780:CDS 35.0%
ACCATTTGAACCACTTTCAA+CGG - chr3_2:65102838-65102857 None:intergenic 35.0%
! AGTAGTTTGTGTTAGCTCAA+TGG + chr3_2:65103143-65103162 Msa0417780:intron 35.0%
! TAGCTGTCTTATTGGAATGT+TGG + chr3_2:65103172-65103191 Msa0417780:intron 35.0%
! TTGGAATGTTGGCATGTTTT+AGG + chr3_2:65103183-65103202 Msa0417780:intron 35.0%
! TGGAATGTTGGCATGTTTTA+GGG + chr3_2:65103184-65103203 Msa0417780:intron 35.0%
! GGTTTGTTCTAATCAAGTGA+TGG + chr3_2:65103205-65103224 Msa0417780:intron 35.0%
TGTGCATATATTCTCACAAG+TGG + chr3_2:65103239-65103258 Msa0417780:intron 35.0%
TGATATATGATGCCTGTTTC+TGG + chr3_2:65103310-65103329 Msa0417780:intron 35.0%
AAAAAAGATGCAGCTTCTCA+TGG + chr3_2:65103599-65103618 Msa0417780:three_prime_UTR 35.0%
AAAGAAAACAGCATACTGCA+AGG - chr3_2:65103838-65103857 None:intergenic 35.0%
ATTTCCTAGAGTACAATGGT+TGG + chr3_2:65103946-65103965 Msa0417780:three_prime_UTR 35.0%
TCTATATAAATCCAACAGCG+GGG - chr3_2:65103989-65104008 None:intergenic 35.0%
!!! TTGAGTGTGGTTGCGTTTTT+TGG - chr3_2:65100268-65100287 None:intergenic 40.0%
TAAACCCTAGAATTGACGGA+GGG - chr3_2:65100334-65100353 None:intergenic 40.0%
AGAAGAGGTGAGAGATTGTT+CGG - chr3_2:65100397-65100416 None:intergenic 40.0%
AAGCTTAGCGAAAACCTCAT+CGG - chr3_2:65100482-65100501 None:intergenic 40.0%
ATCGAATCAGCACAAAACCT+CGG - chr3_2:65100643-65100662 None:intergenic 40.0%
! TGATTCGATTTTTCCTCCGT+TGG + chr3_2:65100654-65100673 Msa0417780:CDS 40.0%
TCCTCCGTTGGATTATAGTA+TGG + chr3_2:65100666-65100685 Msa0417780:CDS 40.0%
TCCATACTATAATCCAACGG+AGG - chr3_2:65100670-65100689 None:intergenic 40.0%
ATCAACAAATTCTGCAACGG+AGG - chr3_2:65100694-65100713 None:intergenic 40.0%
CTGATGTTCATGGTTTGACT+TGG + chr3_2:65100716-65100735 Msa0417780:CDS 40.0%
! ACTAGAGGTGCAATGTTCAT+CGG + chr3_2:65100856-65100875 Msa0417780:CDS 40.0%
! CTGTTCGATTAGTTCCGAAT+CGG + chr3_2:65100890-65100909 Msa0417780:CDS 40.0%
AAGACACAATCTCGACACAT+CGG - chr3_2:65100941-65100960 None:intergenic 40.0%
! GTCGGATTTTGTGTTGAAAG+CGG + chr3_2:65101131-65101150 Msa0417780:CDS 40.0%
!!! GCCATTTTGATTCTCATTCC+AGG - chr3_2:65101192-65101211 None:intergenic 40.0%
ATGATTCTTCCAGGACTACT+TGG + chr3_2:65101223-65101242 Msa0417780:CDS 40.0%
!! TGCTGTGGCATGTGTTTTTA+AGG + chr3_2:65101580-65101599 Msa0417780:intron 40.0%
TGAAGAGGTTGAAATGGGTA+AGG + chr3_2:65101667-65101686 Msa0417780:intron 40.0%
! TACCCTGCTTTGTTGAATTC+AGG + chr3_2:65101818-65101837 Msa0417780:intron 40.0%
TTCAGGAAATTTGGTTGGGT+TGG + chr3_2:65101835-65101854 Msa0417780:intron 40.0%
GTCCCAATAATGGTATCCAT+TGG - chr3_2:65101908-65101927 None:intergenic 40.0%
TTGGAAGTTTGCAACACTTC+AGG - chr3_2:65102321-65102340 None:intergenic 40.0%
! AAGTGTTGCAAACTTCCAAG+TGG + chr3_2:65102322-65102341 Msa0417780:CDS 40.0%
AGTGTTGCAAACTTCCAAGT+GGG + chr3_2:65102323-65102342 Msa0417780:CDS 40.0%
TGAACCCTGTGATAGAAAAG+GGG - chr3_2:65102461-65102480 None:intergenic 40.0%
GTGAACCCTGTGATAGAAAA+GGG - chr3_2:65102462-65102481 None:intergenic 40.0%
AGTGAACCCTGTGATAGAAA+AGG - chr3_2:65102463-65102482 None:intergenic 40.0%
! AGTTACAGTACTTTTCCTGC+TGG + chr3_2:65102519-65102538 Msa0417780:CDS 40.0%
AACGGAAAATAGATCATGCC+TGG - chr3_2:65102556-65102575 None:intergenic 40.0%
GAAGTTATCACCTGGAAAGT+TGG - chr3_2:65102589-65102608 None:intergenic 40.0%
AGGAGTTACCCATACAAAGA+CGG - chr3_2:65102611-65102630 None:intergenic 40.0%
CTTTGTATGGGTAACTCCTT+TGG + chr3_2:65102612-65102631 Msa0417780:CDS 40.0%
ACAAAATCTGTGCCAAAGGA+AGG - chr3_2:65102735-65102754 None:intergenic 40.0%
! CCTTTGGCACAGATTTTGTT+CGG + chr3_2:65102736-65102755 Msa0417780:CDS 40.0%
AACTGCAACTCAATGAAACC+CGG + chr3_2:65102765-65102784 Msa0417780:CDS 40.0%
CCAAATAGCTGAAACGTTAC+AGG - chr3_2:65102792-65102811 None:intergenic 40.0%
CCTGTAACGTTTCAGCTATT+TGG + chr3_2:65102789-65102808 Msa0417780:CDS 40.0%
CCATTTGAACCACTTTCAAC+GGG - chr3_2:65102837-65102856 None:intergenic 40.0%
TCAAATGGTACTGTTAGCAC+AGG + chr3_2:65102849-65102868 Msa0417780:CDS 40.0%
AGTAAGTCGAATCCTCAAGA+GGG - chr3_2:65102920-65102939 None:intergenic 40.0%
CTTACTCAAAATTGCTCGAC+AGG + chr3_2:65102934-65102953 Msa0417780:CDS 40.0%
ATGCACATAAGTAGCTGTAC+AGG + chr3_2:65103025-65103044 Msa0417780:three_prime_UTR 40.0%
!!! TTTTGGTTTGCACCAGAAAC+AGG - chr3_2:65103325-65103344 None:intergenic 40.0%
!! GTGTTTTTGCTCTGTGGTTT+TGG - chr3_2:65103342-65103361 None:intergenic 40.0%
! TTTTCTGTTATGGGGTAGCA+GGG - chr3_2:65103455-65103474 None:intergenic 40.0%
! ATTTTCTGTTATGGGGTAGC+AGG - chr3_2:65103456-65103475 None:intergenic 40.0%
TCTCATGGCATGAAGTTCAA+TGG + chr3_2:65103614-65103633 Msa0417780:three_prime_UTR 40.0%
TAAGGACACTCACTACAGAT+GGG - chr3_2:65103668-65103687 None:intergenic 40.0%
ATAAGGACACTCACTACAGA+TGG - chr3_2:65103669-65103688 None:intergenic 40.0%
CATACTGCAAGGTCAAAAGA+TGG - chr3_2:65103827-65103846 None:intergenic 40.0%
CTAACCAACCATTGTACTCT+AGG - chr3_2:65103953-65103972 None:intergenic 40.0%
AGTACTTGGCGGTTCATGAT+TGG - chr3_2:65100235-65100254 None:intergenic 45.0%
!!! GTGGTTGCGTTTTTTGGAGA+CGG - chr3_2:65100262-65100281 None:intergenic 45.0%
AAATCCCCTCCGTCAATTCT+AGG + chr3_2:65100326-65100345 Msa0417780:CDS 45.0%
AATCCCCTCCGTCAATTCTA+GGG + chr3_2:65100327-65100346 Msa0417780:CDS 45.0%
AAACCCTAGAATTGACGGAG+GGG - chr3_2:65100333-65100352 None:intergenic 45.0%
GTAAACCCTAGAATTGACGG+AGG - chr3_2:65100335-65100354 None:intergenic 45.0%
AGGGTTTACTACTTCCCTCA+AGG + chr3_2:65100346-65100365 Msa0417780:CDS 45.0%
TGTTCGGAAGTGAAGTAGCT+TGG - chr3_2:65100381-65100400 None:intergenic 45.0%
!!! AACCTCATCGGTTTTCGGAT+CGG - chr3_2:65100470-65100489 None:intergenic 45.0%
!!! GCGAAAACCTCATCGGTTTT+CGG - chr3_2:65100475-65100494 None:intergenic 45.0%
ACTCCTTCTGATGCGAACAA+CGG + chr3_2:65100601-65100620 Msa0417780:CDS 45.0%
GAGTTTCGTCACATTTACCG+TGG + chr3_2:65100739-65100758 Msa0417780:CDS 45.0%
GTTCACAAACCTACTCCAAC+CGG - chr3_2:65100791-65100810 None:intergenic 45.0%
!! AACGCTAAGAAGCTTGTTGC+TGG + chr3_2:65100808-65100827 Msa0417780:CDS 45.0%
GAACTAATCGAACAGCACGA+CGG - chr3_2:65100885-65100904 None:intergenic 45.0%
AGATTGTGTCTTCCGATCTG+TGG + chr3_2:65100949-65100968 Msa0417780:CDS 45.0%
CTACTTCTCACTCCACAGAT+CGG - chr3_2:65100964-65100983 None:intergenic 45.0%
GATCTGTGGAGTGAGAAGTA+GGG + chr3_2:65100963-65100982 Msa0417780:CDS 45.0%
AGTGGTGTATTATCCGAGAG+CGG + chr3_2:65101104-65101123 Msa0417780:CDS 45.0%
! GGATTTTGTGTTGAAAGCGG+AGG + chr3_2:65101134-65101153 Msa0417780:CDS 45.0%
!! ATGAGTGTTACTTGGTGTCC+TGG + chr3_2:65101171-65101190 Msa0417780:CDS 45.0%
TGGAGACTGATGATTCTTCC+AGG + chr3_2:65101214-65101233 Msa0417780:CDS 45.0%
TCCAGGACTACTTGGTTTCA+AGG + chr3_2:65101231-65101250 Msa0417780:CDS 45.0%
ACCTTGAAACCAAGTAGTCC+TGG - chr3_2:65101235-65101254 None:intergenic 45.0%
GTTTCAAGGTGTAGTGTCTC+AGG + chr3_2:65101245-65101264 Msa0417780:CDS 45.0%
AGGTTTCTGTTCCTGATCGT+GGG + chr3_2:65101265-65101284 Msa0417780:CDS 45.0%
CATACATGAAGCATACGCCA+AGG - chr3_2:65101306-65101325 None:intergenic 45.0%
CTTGGCGTATGCTTCATGTA+TGG + chr3_2:65101304-65101323 Msa0417780:intron 45.0%
TGAGTATGGAAGAGTTGCTG+TGG + chr3_2:65101565-65101584 Msa0417780:intron 45.0%
AAAGAAGTTCCACCTGCCAA+GGG - chr3_2:65102353-65102372 None:intergenic 45.0%
! GTCCTTTTCAATGGGGGAAA+GGG - chr3_2:65102399-65102418 None:intergenic 45.0%
! AGTCCTTTTCAATGGGGGAA+AGG - chr3_2:65102400-65102419 None:intergenic 45.0%
! CCTCTAGTCCTTTTCAATGG+GGG - chr3_2:65102405-65102424 None:intergenic 45.0%
! CCCTCTAGTCCTTTTCAATG+GGG - chr3_2:65102406-65102425 None:intergenic 45.0%
CCCCATTGAAAAGGACTAGA+GGG + chr3_2:65102403-65102422 Msa0417780:CDS 45.0%
! CCCCTCTAGTCCTTTTCAAT+GGG - chr3_2:65102407-65102426 None:intergenic 45.0%
CCCATTGAAAAGGACTAGAG+GGG + chr3_2:65102404-65102423 Msa0417780:CDS 45.0%
! ACCCCTCTAGTCCTTTTCAA+TGG - chr3_2:65102408-65102427 None:intergenic 45.0%
!! AAAAGGACTAGAGGGGTATC+TGG + chr3_2:65102411-65102430 Msa0417780:CDS 45.0%
!! AAAGGACTAGAGGGGTATCT+GGG + chr3_2:65102412-65102431 Msa0417780:CDS 45.0%
! GTATCTGGGGTGTTAACTGA+TGG + chr3_2:65102426-65102445 Msa0417780:CDS 45.0%
! GAGACCCCTTTTCTATCACA+GGG + chr3_2:65102454-65102473 Msa0417780:CDS 45.0%
CAAAGACGGAAGTTATCACC+TGG - chr3_2:65102597-65102616 None:intergenic 45.0%
CAAAGGAAGGCAAACTACTC+TGG - chr3_2:65102722-65102741 None:intergenic 45.0%
! CAGAGTAGTTTGCCTTCCTT+TGG + chr3_2:65102720-65102739 Msa0417780:CDS 45.0%
CCGAACAAAATCTGTGCCAA+AGG - chr3_2:65102739-65102758 None:intergenic 45.0%
ACTGCAACTCAATGAAACCC+GGG + chr3_2:65102766-65102785 Msa0417780:CDS 45.0%
CCCGTTGAAAGTGGTTCAAA+TGG + chr3_2:65102834-65102853 Msa0417780:CDS 45.0%
ACAGGAGATGACAGCAGTAA+GGG + chr3_2:65102867-65102886 Msa0417780:CDS 45.0%
AGGCATTAACAACCCTCTTG+AGG + chr3_2:65102905-65102924 Msa0417780:CDS 45.0%
GAGTAAGTCGAATCCTCAAG+AGG - chr3_2:65102921-65102940 None:intergenic 45.0%
AAATTGCTCGACAGGCTTGA+TGG + chr3_2:65102942-65102961 Msa0417780:CDS 45.0%
CCTCAACTGTTGAGGCTATT+TGG - chr3_2:65102974-65102993 None:intergenic 45.0%
CCAAATAGCCTCAACAGTTG+AGG + chr3_2:65102971-65102990 Msa0417780:CDS 45.0%
!!! CTAGGAGTGTTTTTGCTCTG+TGG - chr3_2:65103348-65103367 None:intergenic 45.0%
CACAGAGCAAAAACACTCCT+AGG + chr3_2:65103346-65103365 Msa0417780:intron 45.0%
TTGGAGACGGTGGTAGTACT+TGG - chr3_2:65100249-65100268 None:intergenic 50.0%
!!! GTTGCGTTTTTTGGAGACGG+TGG - chr3_2:65100259-65100278 None:intergenic 50.0%
ATTGACGGAGGGGATTTGCA+CGG - chr3_2:65100323-65100342 None:intergenic 50.0%
CTACTTCCCTCAAGGTCACA+TGG + chr3_2:65100354-65100373 Msa0417780:CDS 50.0%
CTTGGTCCATGTGACCTTGA+GGG - chr3_2:65100363-65100382 None:intergenic 50.0%
TAGGGACGAGAGAGAAGAAG+AGG - chr3_2:65100412-65100431 None:intergenic 50.0%
GAGACGGAGCAGAGAATGTA+GGG - chr3_2:65100430-65100449 None:intergenic 50.0%
!!! GTGGTGGATTTTCTGTTCCG+AGG + chr3_2:65100623-65100642 Msa0417780:CDS 50.0%
AACCGGTGGTCAACAAATGC+CGG - chr3_2:65100774-65100793 None:intergenic 50.0%
CGATCTGTGGAGTGAGAAGT+AGG + chr3_2:65100962-65100981 Msa0417780:CDS 50.0%
GGTGGATGAAGAAGAGAAGC+TGG + chr3_2:65100984-65101003 Msa0417780:CDS 50.0%
GGATGAAGAAGAGAAGCTGG+TGG + chr3_2:65100987-65101006 Msa0417780:CDS 50.0%
! AGAGAAGCTGGTGGATGAGA+AGG + chr3_2:65100996-65101015 Msa0417780:CDS 50.0%
!!! TGGATGAGAAGGCGTTTTCG+AGG + chr3_2:65101007-65101026 Msa0417780:CDS 50.0%
GTGGTGTATTATCCGAGAGC+GGG + chr3_2:65101105-65101124 Msa0417780:CDS 50.0%
TGGTGTATTATCCGAGAGCG+GGG + chr3_2:65101106-65101125 Msa0417780:CDS 50.0%
TGTGTTGAAAGCGGAGGTTG+TGG + chr3_2:65101140-65101159 Msa0417780:CDS 50.0%
! ATGCGGCGATGAGTGTTACT+TGG + chr3_2:65101163-65101182 Msa0417780:CDS 50.0%
CAGGTTTCTGTTCCTGATCG+TGG + chr3_2:65101264-65101283 Msa0417780:CDS 50.0%
GGTTTCTGTTCCTGATCGTG+GGG + chr3_2:65101266-65101285 Msa0417780:CDS 50.0%
GAAAGAAGTTCCACCTGCCA+AGG - chr3_2:65102354-65102373 None:intergenic 50.0%
CCCCCATTGAAAAGGACTAG+AGG + chr3_2:65102402-65102421 Msa0417780:CDS 50.0%
!! AAGGACTAGAGGGGTATCTG+GGG + chr3_2:65102413-65102432 Msa0417780:CDS 50.0%
! GGGGTGTTAACTGATGGAGA+TGG + chr3_2:65102432-65102451 Msa0417780:CDS 50.0%
! GGAGACCCCTTTTCTATCAC+AGG + chr3_2:65102453-65102472 Msa0417780:CDS 50.0%
! TACTTTTCCTGCTGGCATGC+AGG + chr3_2:65102527-65102546 Msa0417780:CDS 50.0%
! ACTTTTCCTGCTGGCATGCA+GGG + chr3_2:65102528-65102547 Msa0417780:CDS 50.0%
AACGTTGGCAGTTCTCACTC+TGG + chr3_2:65102678-65102697 Msa0417780:CDS 50.0%
TAGCTGAAACGTTACAGGCC+CGG - chr3_2:65102787-65102806 None:intergenic 50.0%
ACAGAACAGCCCGTTGAAAG+TGG + chr3_2:65102825-65102844 Msa0417780:CDS 50.0%
CACAGGAGATGACAGCAGTA+AGG + chr3_2:65102866-65102885 Msa0417780:CDS 50.0%
AAGGGCTGCAACGAAACTGA+AGG + chr3_2:65102885-65102904 Msa0417780:CDS 50.0%
CTGTTGAGGCTATTTGGCAC+TGG - chr3_2:65102968-65102987 None:intergenic 50.0%
ATAGCACGCCTCAACTGTTG+AGG - chr3_2:65102982-65103001 None:intergenic 50.0%
ACTTTGGGTGCTTTCCATGC+AGG + chr3_2:65103780-65103799 Msa0417780:intron 50.0%
AAAAGATGGTCCTGTCTGCG+TGG - chr3_2:65103813-65103832 None:intergenic 50.0%
TCTCAATTTGACCCCGCTGT+TGG + chr3_2:65103975-65103994 Msa0417780:three_prime_UTR 50.0%
GAGACGGTGGTAGTACTTGG+CGG - chr3_2:65100246-65100265 None:intergenic 55.0%
! CCAGAGTTTGGGGTTGAGTG+TGG - chr3_2:65100281-65100300 None:intergenic 55.0%
CCACACTCAACCCCAAACTC+TGG + chr3_2:65100278-65100297 Msa0417780:CDS 55.0%
CGATAGCTCGCCAGAGTTTG+GGG - chr3_2:65100291-65100310 None:intergenic 55.0%
GCGATAGCTCGCCAGAGTTT+GGG - chr3_2:65100292-65100311 None:intergenic 55.0%
AAACTCTGGCGAGCTATCGC+CGG + chr3_2:65100292-65100311 Msa0417780:CDS 55.0%
GCTTGGTCCATGTGACCTTG+AGG - chr3_2:65100364-65100383 None:intergenic 55.0%
GGAGACGGAGCAGAGAATGT+AGG - chr3_2:65100431-65100450 None:intergenic 55.0%
GAGGAAATGAACGGCGGAGA+CGG - chr3_2:65100446-65100465 None:intergenic 55.0%
ATCGGCGAGGAAATGAACGG+CGG - chr3_2:65100452-65100471 None:intergenic 55.0%
CGGATCGGCGAGGAAATGAA+CGG - chr3_2:65100455-65100474 None:intergenic 55.0%
GCTTCAATCACCGGAATCCG+TGG - chr3_2:65100541-65100560 None:intergenic 55.0%
CCGTCGTCAGCTTCAATCAC+CGG - chr3_2:65100550-65100569 None:intergenic 55.0%
CCGGTGATTGAAGCTGACGA+CGG + chr3_2:65100547-65100566 Msa0417780:CDS 55.0%
TTGAAGCTGACGACGGTGAG+AGG + chr3_2:65100554-65100573 Msa0417780:CDS 55.0%
CCACCGTTGTTCGCATCAGA+AGG - chr3_2:65100607-65100626 None:intergenic 55.0%
CCTTCTGATGCGAACAACGG+TGG + chr3_2:65100604-65100623 Msa0417780:CDS 55.0%
TCTGATGCGAACAACGGTGG+TGG + chr3_2:65100607-65100626 Msa0417780:CDS 55.0%
! GGCATTTGTTGACCACCGGT+TGG + chr3_2:65100773-65100792 Msa0417780:CDS 55.0%
! TGTTGACCACCGGTTGGAGT+AGG + chr3_2:65100779-65100798 Msa0417780:CDS 55.0%
CACAAACCTACTCCAACCGG+TGG - chr3_2:65100788-65100807 None:intergenic 55.0%
CTGTGGAGTGAGAAGTAGGG+TGG + chr3_2:65100966-65100985 Msa0417780:CDS 55.0%
!!! GAGAAGGCGTTTTCGAGGCA+CGG + chr3_2:65101012-65101031 Msa0417780:CDS 55.0%
!!! AGAAGGCGTTTTCGAGGCAC+GGG + chr3_2:65101013-65101032 Msa0417780:CDS 55.0%
GAAATGGCAGCACAGGGGAT+GGG + chr3_2:65101075-65101094 Msa0417780:CDS 55.0%
AAATGGCAGCACAGGGGATG+GGG + chr3_2:65101076-65101095 Msa0417780:CDS 55.0%
ACAGGGGATGGGGTTTGAAG+TGG + chr3_2:65101086-65101105 Msa0417780:CDS 55.0%
TGTATTATCCGAGAGCGGGG+TGG + chr3_2:65101109-65101128 Msa0417780:CDS 55.0%
GAAAGCGGAGGTTGTGGATG+CGG + chr3_2:65101146-65101165 Msa0417780:CDS 55.0%
! GGAAAGGGCGTATGAAGGGA+AGG - chr3_2:65102384-65102403 None:intergenic 55.0%
! TGGGGGAAAGGGCGTATGAA+GGG - chr3_2:65102388-65102407 None:intergenic 55.0%
! ATGGGGGAAAGGGCGTATGA+AGG - chr3_2:65102389-65102408 None:intergenic 55.0%
CGCCCTTTCCCCCATTGAAA+AGG + chr3_2:65102394-65102413 Msa0417780:CDS 55.0%
CTTTGGCAGCAACACAGTGC+CGG + chr3_2:65102629-65102648 Msa0417780:CDS 55.0%
TTTGGCAGCAACACAGTGCC+GGG + chr3_2:65102630-65102649 Msa0417780:CDS 55.0%
!! GGCAAACTACTCTGGCTCTC+TGG - chr3_2:65102714-65102733 None:intergenic 55.0%
AGCTGAAACGTTACAGGCCC+GGG - chr3_2:65102786-65102805 None:intergenic 55.0%
!! TGCGTGGAGAAGTACCTGCA+TGG - chr3_2:65103797-65103816 None:intergenic 55.0%
AGGTACTTCTCCACGCAGAC+AGG + chr3_2:65103800-65103819 Msa0417780:intron 55.0%
GGCGATAGCTCGCCAGAGTT+TGG - chr3_2:65100293-65100312 None:intergenic 60.0%
!!! CATCGGTTTTCGGATCGGCG+AGG - chr3_2:65100465-65100484 None:intergenic 60.0%
CGCCGATCCGAAAACCGATG+AGG + chr3_2:65100465-65100484 Msa0417780:CDS 60.0%
GTGGTCAACAAATGCCGGCG+CGG - chr3_2:65100769-65100788 None:intergenic 60.0%
! CGCCGGCATTTGTTGACCAC+CGG + chr3_2:65100769-65100788 Msa0417780:CDS 60.0%
GTTCCGAATCGGAGTAGCGC+CGG + chr3_2:65100901-65100920 Msa0417780:CDS 60.0%
ATCGGAGCAAACACCGCCAC+CGG - chr3_2:65100923-65100942 None:intergenic 60.0%
!! GCGTTTTCGAGGCACGGGAA+GGG + chr3_2:65101018-65101037 Msa0417780:CDS 60.0%
!! CGTTTTCGAGGCACGGGAAG+GGG + chr3_2:65101019-65101038 Msa0417780:CDS 60.0%
CGGGAAGGGGAAGTTGTCTC+CGG + chr3_2:65101032-65101051 Msa0417780:CDS 60.0%
GAAGGGGAAGTTGTCTCCGG+TGG + chr3_2:65101035-65101054 Msa0417780:CDS 60.0%
GGAAATGGCAGCACAGGGGA+TGG + chr3_2:65101074-65101093 Msa0417780:CDS 60.0%
TTATCCGAGAGCGGGGTGGT+CGG + chr3_2:65101113-65101132 Msa0417780:CDS 60.0%
AAATCCGACCACCCCGCTCT+CGG - chr3_2:65101120-65101139 None:intergenic 60.0%
CTGTTCCTGATCGTGGGGCT+TGG + chr3_2:65101271-65101290 Msa0417780:CDS 60.0%
GGGCTTGGAGAGGTTCACCT+TGG + chr3_2:65101286-65101305 Msa0417780:CDS 60.0%
CTTCCAAGTGGGTCAGCCCT+TGG + chr3_2:65102334-65102353 Msa0417780:CDS 60.0%
! CGGCACTGTGTTGCTGCCAA+AGG - chr3_2:65102631-65102650 None:intergenic 60.0%
TTGGCAGCAACACAGTGCCG+GGG + chr3_2:65102631-65102650 Msa0417780:CDS 60.0%
TTTACCGTGGAACGCCGCGC+CGG + chr3_2:65100752-65100771 Msa0417780:CDS 65.0%
CCACCGGCGCTACTCCGATT+CGG - chr3_2:65100907-65100926 None:intergenic 65.0%
!! AATCGGAGTAGCGCCGGTGG+CGG + chr3_2:65100907-65100926 Msa0417780:CDS 65.0%
!! GGCGTTTTCGAGGCACGGGA+AGG + chr3_2:65101017-65101036 Msa0417780:CDS 65.0%
GGGGAAGTTGTCTCCGGTGG+CGG + chr3_2:65101038-65101057 Msa0417780:CDS 65.0%
! GTTGTCTCCGGTGGCGGTTG+CGG + chr3_2:65101044-65101063 Msa0417780:CDS 65.0%
GCGGCGGAAATGGCAGCACA+GGG + chr3_2:65101069-65101088 Msa0417780:CDS 65.0%
CGGCGGAAATGGCAGCACAG+GGG + chr3_2:65101070-65101089 Msa0417780:CDS 65.0%
CCTCTCCAAGCCCCACGATC+AGG - chr3_2:65101279-65101298 None:intergenic 65.0%
CCTGATCGTGGGGCTTGGAG+AGG + chr3_2:65101276-65101295 Msa0417780:CDS 65.0%
CTGCCAAGGGCTGACCCACT+TGG - chr3_2:65102340-65102359 None:intergenic 65.0%
CAAGTGGGTCAGCCCTTGGC+AGG + chr3_2:65102338-65102357 Msa0417780:CDS 65.0%
GGGGATTTGCACGGCAGCGC+CGG - chr3_2:65100314-65100333 None:intergenic 70.0%
AATGCCGGCGCGGCGTTCCA+CGG - chr3_2:65100759-65100778 None:intergenic 70.0%
! CCGAATCGGAGTAGCGCCGG+TGG + chr3_2:65100904-65100923 Msa0417780:CDS 70.0%
GGTTGCGGAGGCGGCGGAAA+TGG + chr3_2:65101059-65101078 Msa0417780:CDS 70.0%
GGCGGCGGAAATGGCAGCAC+AGG + chr3_2:65101068-65101087 Msa0417780:CDS 70.0%
GTGGGTCAGCCCTTGGCAGG+TGG + chr3_2:65102341-65102360 Msa0417780:CDS 70.0%
CTGGCTCCCTGCATGCCAGC+AGG - chr3_2:65102537-65102556 None:intergenic 70.0%
CTGCTGGCATGCAGGGAGCC+AGG + chr3_2:65102535-65102554 Msa0417780:CDS 70.0%
! GTCTCCGGTGGCGGTTGCGG+AGG + chr3_2:65101047-65101066 Msa0417780:CDS 75.0%
! TCCGGTGGCGGTTGCGGAGG+CGG + chr3_2:65101050-65101069 Msa0417780:CDS 75.0%
! GCCGCCTCCGCAACCGCCAC+CGG - chr3_2:65101054-65101073 None:intergenic 80.0%
!! GGTGGCGGTTGCGGAGGCGG+CGG + chr3_2:65101053-65101072 Msa0417780:CDS 80.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 65100126 65104055 65100126 ID=Msa0417780;Name=Msa0417780
chr3_2 mRNA 65100126 65104055 65100126 ID=Msa0417780-mRNA-1;Parent=Msa0417780;Name=Msa0417780-mRNA-1;_AED=0.03;_eAED=0.03;_QI=73|1|1|1|0.33|0.25|4|385|608
chr3_2 exon 65100126 65101320 65100126 ID=Msa0417780-mRNA-1:exon:14611;Parent=Msa0417780-mRNA-1
chr3_2 exon 65102303 65103046 65102303 ID=Msa0417780-mRNA-1:exon:14612;Parent=Msa0417780-mRNA-1
chr3_2 exon 65103583 65103674 65103583 ID=Msa0417780-mRNA-1:exon:14613;Parent=Msa0417780-mRNA-1
chr3_2 exon 65103802 65104055 65103802 ID=Msa0417780-mRNA-1:exon:14614;Parent=Msa0417780-mRNA-1
chr3_2 five_prime_UTR 65100126 65100198 65100126 ID=Msa0417780-mRNA-1:five_prime_utr;Parent=Msa0417780-mRNA-1
chr3_2 CDS 65100199 65101320 65100199 ID=Msa0417780-mRNA-1:cds;Parent=Msa0417780-mRNA-1
chr3_2 CDS 65102303 65103007 65102303 ID=Msa0417780-mRNA-1:cds;Parent=Msa0417780-mRNA-1
chr3_2 three_prime_UTR 65103008 65103046 65103008 ID=Msa0417780-mRNA-1:three_prime_utr;Parent=Msa0417780-mRNA-1
chr3_2 three_prime_UTR 65103583 65103674 65103583 ID=Msa0417780-mRNA-1:three_prime_utr;Parent=Msa0417780-mRNA-1
chr3_2 three_prime_UTR 65103802 65104055 65103802 ID=Msa0417780-mRNA-1:three_prime_utr;Parent=Msa0417780-mRNA-1
Gene Sequence

>Msa0417780

ATGTTCGAAAAACCCTCACTCATTTTCATTCAACCAATCATGAACCGCCAAGTACTACCACCGTCTCCAAAAAACGCAACCACACTCAACCCCAAACTCTGGCGAGCTATCGCCGGCGCTGCCGTGCAAATCCCCTCCGTCAATTCTAGGGTTTACTACTTCCCTCAAGGTCACATGGACCAAGCTACTTCACTTCCGAACAATCTCTCACCTCTTCTTCTCTCTCGTCCCTACATTCTCTGCTCCGTCTCCGCCGTTCATTTCCTCGCCGATCCGAAAACCGATGAGGTTTTCGCTAAGCTTTTTCTTCAACCGTTGAATGATTTCACTGTTAATTTTCCACGGATTCCGGTGATTGAAGCTGACGACGGTGAGAGGATTTCTTCGTTTGCGAAGATTCTTACTCCTTCTGATGCGAACAACGGTGGTGGATTTTCTGTTCCGAGGTTTTGTGCTGATTCGATTTTTCCTCCGTTGGATTATAGTATGGATCCTCCGTTGCAGAATTTGTTGATTACTGATGTTCATGGTTTGACTTGGGAGTTTCGTCACATTTACCGTGGAACGCCGCGCCGGCATTTGTTGACCACCGGTTGGAGTAGGTTTGTGAACGCTAAGAAGCTTGTTGCTGGTGATTCCGTTGTTTTTATGAAGAATACTAGAGGTGCAATGTTCATCGGAATCCGTCGTGCTGTTCGATTAGTTCCGAATCGGAGTAGCGCCGGTGGCGGTGTTTGCTCCGATGTGTCGAGATTGTGTCTTCCGATCTGTGGAGTGAGAAGTAGGGTGGATGAAGAAGAGAAGCTGGTGGATGAGAAGGCGTTTTCGAGGCACGGGAAGGGGAAGTTGTCTCCGGTGGCGGTTGCGGAGGCGGCGGAAATGGCAGCACAGGGGATGGGGTTTGAAGTGGTGTATTATCCGAGAGCGGGGTGGTCGGATTTTGTGTTGAAAGCGGAGGTTGTGGATGCGGCGATGAGTGTTACTTGGTGTCCTGGAATGAGAATCAAAATGGCTGTGGAGACTGATGATTCTTCCAGGACTACTTGGTTTCAAGGTGTAGTGTCTCAGGTTTCTGTTCCTGATCGTGGGGCTTGGAGAGGTTCACCTTGGCGTATGCTTCATATTACATGGGACGAACCTGAAGTGTTGCAAACTTCCAAGTGGGTCAGCCCTTGGCAGGTGGAACTTCTTTCTACTACACCTTCCCTTCATACGCCCTTTCCCCCATTGAAAAGGACTAGAGGGGTATCTGGGGTGTTAACTGATGGAGATGGAGACCCCTTTTCTATCACAGGGTTCACTAATTCAACAATGGGACAATTGAATCAACCATTGTTGAGTTACAGTACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCCGTTTCAAGTTTTTCCAACTTTCCAGGTGATAACTTCCGTCTTTGTATGGGTAACTCCTTTGGCAGCAACACAGTGCCGGGGTTAAAATCTTTTTCAACGGATCTAAACGTTGGCAGTTCTCACTCTGGTGATTTTTCACCAGAGAGCCAGAGTAGTTTGCCTTCCTTTGGCACAGATTTTGTTCGGAACTACAACTGCAACTCAATGAAACCCGGGCCTGTAACGTTTCAGCTATTTGGTGCAGTCATTCAGACAGAACAGCCCGTTGAAAGTGGTTCAAATGGTACTGTTAGCACAGGAGATGACAGCAGTAAGGGCTGCAACGAAACTGAAGGCATTAACAACCCTCTTGAGGATTCGACTTACTCAAAATTGCTCGACAGGCTTGATGGCCAGTGCCAAATAGCCTCAACAGTTGAGGCGTGCTATCTGTGA
Protein sequence

>Msa0417780

MFEKPSLIFIQPIMNRQVLPPSPKNATTLNPKLWRAIAGAAVQIPSVNSRVYYFPQGHMDQATSLPNNLSPLLLSRPYILCSVSAVHFLADPKTDEVFAKLFLQPLNDFTVNFPRIPVIEADDGERISSFAKILTPSDANNGGGFSVPRFCADSIFPPLDYSMDPPLQNLLITDVHGLTWEFRHIYRGTPRRHLLTTGWSRFVNAKKLVAGDSVVFMKNTRGAMFIGIRRAVRLVPNRSSAGGGVCSDVSRLCLPICGVRSRVDEEEKLVDEKAFSRHGKGKLSPVAVAEAAEMAAQGMGFEVVYYPRAGWSDFVLKAEVVDAAMSVTWCPGMRIKMAVETDDSSRTTWFQGVVSQVSVPDRGAWRGSPWRMLHITWDEPEVLQTSKWVSPWQVELLSTTPSLHTPFPPLKRTRGVSGVLTDGDGDPFSITGFTNSTMGQLNQPLLSYSTFPAGMQGARHDLFSVSSFSNFPGDNFRLCMGNSFGSNTVPGLKSFSTDLNVGSSHSGDFSPESQSSLPSFGTDFVRNYNCNSMKPGPVTFQLFGAVIQTEQPVESGSNGTVSTGDDSSKGCNETEGINNPLEDSTYSKLLDRLDGQCQIASTVEACYL*