AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0418670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0418670 MtrunA17_Chr3g0116411 75.862 203 36 4 1 200 102 294 4.66e-79 245
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 67 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAACAAGTTCTACGCTATT+TGG 0.188654 3_2:-66491050 None:intergenic
TTCAGCAAACAGGTCCTTAT+TGG 0.223966 3_2:-66491569 None:intergenic
TTCAGCAAACAGGTCCTTAT+TGG 0.223966 3_2:-66491783 None:intergenic
TTCAGCAAACAGGTCCTTAT+TGG 0.223966 3_2:-66491997 None:intergenic
GCATGTGAACTTGAAACTTC+TGG 0.292503 3_2:+66491517 Msa0418670:CDS
GCATGTGAACTTGAAACTTC+TGG 0.292503 3_2:+66491731 Msa0418670:CDS
GCATGTGAACTTGAAACTTC+TGG 0.292503 3_2:+66491945 Msa0418670:CDS
AAGATGGTAATGTAGATAGA+AGG 0.318676 3_2:+66491075 Msa0418670:CDS
TCGGCTCACAAGCTTGAAAA+AGG 0.326977 3_2:+66490852 Msa0418670:CDS
AGAATCCATTATGTCCAATA+AGG 0.374966 3_2:+66491555 Msa0418670:CDS
AGAATCCATTATGTCCAATA+AGG 0.374966 3_2:+66491769 Msa0418670:CDS
AGAATCCATTATGTCCAATA+AGG 0.374966 3_2:+66491983 Msa0418670:CDS
AGCCAAGTCACCGAGAGTTT+TGG 0.375722 3_2:+66491272 Msa0418670:CDS
ACTTGATGTGCCAATGCATA+TGG 0.375752 3_2:+66491007 Msa0418670:CDS
TGTTACAGCCCATCTCTTAC+CGG 0.383658 3_2:-66490775 None:intergenic
CAGGTCCTTATTGGACATAA+TGG 0.407699 3_2:-66491560 None:intergenic
CAGGTCCTTATTGGACATAA+TGG 0.407699 3_2:-66491774 None:intergenic
CAGGTCCTTATTGGACATAA+TGG 0.407699 3_2:-66491988 None:intergenic
TTTGAAGAAGTGTTGGGCTC+AGG 0.414789 3_2:+66491188 Msa0418670:CDS
AGCCCATCTCTTACCGGTTG+AGG 0.418637 3_2:-66490769 None:intergenic
CTCATACGCTTCTAAATCGT+TGG 0.425403 3_2:+66491217 Msa0418670:CDS
CTCGAGGATTCAACCTCAAC+CGG 0.431548 3_2:+66490756 Msa0418670:CDS
CAACGATTTAGAAGCGTATG+AGG 0.431571 3_2:-66491216 None:intergenic
AAATCCTACCATGTCATTGT+TGG 0.435100 3_2:+66490716 Msa0418670:CDS
GTAGAACTTGTTTCAGAAGA+TGG 0.439449 3_2:+66491059 Msa0418670:CDS
TACCTAAGCCTTCAGCAAAC+AGG 0.461021 3_2:-66491579 None:intergenic
TACCTAAGCCTTCAGCAAAC+AGG 0.461021 3_2:-66491793 None:intergenic
TACCTAAGCCTTCAGCAAAC+AGG 0.461021 3_2:-66492007 None:intergenic
CTTGATGTGCCAATGCATAT+GGG 0.492897 3_2:+66491008 Msa0418670:CDS
TACCAAAACTCTCGGTGACT+TGG 0.498675 3_2:-66491274 None:intergenic
ATGATAAGTCTATGTGTGAA+AGG 0.505569 3_2:+66490928 Msa0418670:CDS
AGATGGTAATGTAGATAGAA+GGG 0.509570 3_2:+66491076 Msa0418670:CDS
CAACCTCAACCGGTAAGAGA+TGG 0.526023 3_2:+66490766 Msa0418670:CDS
TTGAAGAAGTGTTGGGCTCA+GGG 0.526257 3_2:+66491189 Msa0418670:CDS
TCCTATGTTTGAAGAAGTGT+TGG 0.533675 3_2:+66491181 Msa0418670:CDS
GACCTGTTTGCTGAAGGCTT+AGG 0.536114 3_2:+66491577 Msa0418670:CDS
GACCTGTTTGCTGAAGGCTT+AGG 0.536114 3_2:+66491791 Msa0418670:CDS
GACCTGTTTGCTGAAGGCTT+AGG 0.536114 3_2:+66492005 Msa0418670:CDS
GATCAAGCAGCGAAATTCAA+AGG 0.540326 3_2:+66491478 Msa0418670:CDS
ATGGTAGGATTTAACTTAGG+AGG 0.553387 3_2:-66490705 None:intergenic
GATCAAGCAGCGATATTCAA+AGG 0.555526 3_2:+66491692 Msa0418670:CDS
GATCAAGCAGCGATATTCAA+AGG 0.555526 3_2:+66491906 Msa0418670:CDS
AATAAGGACCTGTTTGCTGA+AGG 0.555855 3_2:+66491571 Msa0418670:CDS
AATAAGGACCTGTTTGCTGA+AGG 0.555855 3_2:+66491785 Msa0418670:CDS
AATAAGGACCTGTTTGCTGA+AGG 0.555855 3_2:+66491999 Msa0418670:CDS
AACCTCAACCGGTAAGAGAT+GGG 0.557870 3_2:+66490767 Msa0418670:CDS
ATGCATCATTTAGATCTACA+TGG 0.559779 3_2:-66491142 None:intergenic
CCTACCATGTCATTGTTGGT+TGG 0.564330 3_2:+66490720 Msa0418670:CDS
GTAACAGTATCAAAAGTTGA+TGG 0.568143 3_2:+66490792 Msa0418670:CDS
AAGAGAAGTAGATGCAGCAG+TGG 0.569759 3_2:+66490981 Msa0418670:CDS
AATTATGGTACCAAAACTCT+CGG 0.575030 3_2:-66491282 None:intergenic
ACTTCTGGAAGAAGCAAAGA+GGG 0.576572 3_2:+66491532 Msa0418670:CDS
ACTTCTGGAAGAAGCAAAGA+GGG 0.576572 3_2:+66491746 Msa0418670:CDS
ACTTCTGGAAGAAGCAAAGA+GGG 0.576572 3_2:+66491960 Msa0418670:CDS
GACATGGTAGGATTTAACTT+AGG 0.591746 3_2:-66490708 None:intergenic
CCCAACACTTCTTCAAACAT+AGG 0.592689 3_2:-66491182 None:intergenic
TTGATGTGCCAATGCATATG+GGG 0.595030 3_2:+66491009 Msa0418670:CDS
CCAACCAACAATGACATGGT+AGG 0.598154 3_2:-66490720 None:intergenic
CCTATGTTTGAAGAAGTGTT+GGG 0.601870 3_2:+66491182 Msa0418670:CDS
TGATAAGTCTATGTGTGAAA+GGG 0.602703 3_2:+66490929 Msa0418670:CDS
CTTACCAACCAACAATGACA+TGG 0.609549 3_2:-66490724 None:intergenic
AACTTCTGGAAGAAGCAAAG+AGG 0.635663 3_2:+66491531 Msa0418670:CDS
AACTTCTGGAAGAAGCAAAG+AGG 0.635663 3_2:+66491745 Msa0418670:CDS
AACTTCTGGAAGAAGCAAAG+AGG 0.635663 3_2:+66491959 Msa0418670:CDS
TGAAGAAGTGTTGGGCTCAG+GGG 0.642137 3_2:+66491190 Msa0418670:CDS
TGGTAAGAAAATCTATCTCG+AGG 0.647585 3_2:+66490740 Msa0418670:CDS
TGATGTGCCAATGCATATGG+GGG 0.729130 3_2:+66491010 Msa0418670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGATAAATATTTCTTAATT+TGG + chr3_2:66491341-66491360 Msa0418670:intron 10.0%
!!! TTTTATTATTTACATTTCAT+TGG + chr3_2:66491439-66491458 Msa0418670:intron 10.0%
!! AAGATAAATATTTCTTAATT+TGG + chr3_2:66491341-66491360 Msa0418670:intron 10.0%
!!! TTTTATTATTTACATTTCAT+TGG + chr3_2:66491439-66491458 Msa0418670:intron 10.0%
!!! TTTGTTTTTTGTTTTGTAAT+GGG + chr3_2:66491316-66491335 Msa0418670:intron 15.0%
!! TGTTAATTATTTCATTACAT+TGG + chr3_2:66491653-66491672 Msa0418670:intron 15.0%
!! TGTTAATTATTTCATTACAT+TGG + chr3_2:66491653-66491672 Msa0418670:intron 15.0%
!!! TTTGTTTTTTGTTTTGTAAT+GGG + chr3_2:66491316-66491335 Msa0418670:intron 15.0%
!! TGTTAATTATTTCATTACAT+TGG + chr3_2:66491653-66491672 Msa0418670:intron 15.0%
!! TGTTAATTATTTCATTACAT+TGG + chr3_2:66491653-66491672 Msa0418670:intron 15.0%
!!! ATTTTTCTGAAAAAAGAAAG+AGG + chr3_2:66490955-66490974 Msa0418670:CDS 20.0%
!! CAAAGTTATTGTGTAAATTA+TGG - chr3_2:66491300-66491319 None:intergenic 20.0%
!!! CTTTGTTTTTTGTTTTGTAA+TGG + chr3_2:66491315-66491334 Msa0418670:intron 20.0%
!! AATAATAAAAAACCAACTGT+AGG - chr3_2:66491429-66491448 None:intergenic 20.0%
!!! ATTTTTCTGAAAAAAGAAAG+AGG + chr3_2:66490955-66490974 Msa0418670:CDS 20.0%
!! CAAAGTTATTGTGTAAATTA+TGG - chr3_2:66491300-66491319 None:intergenic 20.0%
!!! CTTTGTTTTTTGTTTTGTAA+TGG + chr3_2:66491315-66491334 Msa0418670:intron 20.0%
!! AATAATAAAAAACCAACTGT+AGG - chr3_2:66491429-66491448 None:intergenic 20.0%
! ATTTGGTTGTTTATACTTGT+AGG + chr3_2:66491358-66491377 Msa0418670:intron 25.0%
! TTTGGTTGTTTATACTTGTA+GGG + chr3_2:66491359-66491378 Msa0418670:intron 25.0%
! ATTTGGTTGTTTATACTTGT+AGG + chr3_2:66491358-66491377 Msa0418670:intron 25.0%
! TTTGGTTGTTTATACTTGTA+GGG + chr3_2:66491359-66491378 Msa0418670:intron 25.0%
GTAACAGTATCAAAAGTTGA+TGG + chr3_2:66490792-66490811 Msa0418670:CDS 30.0%
!! TGATGGTTCTTTTGCTTTTA+AGG + chr3_2:66490809-66490828 Msa0418670:CDS 30.0%
!! TTTTGCTTTTAAGGAAGGAT+GGG + chr3_2:66490818-66490837 Msa0418670:CDS 30.0%
! GCTTGAAAAAGGATATTTTC+TGG + chr3_2:66490863-66490882 Msa0418670:CDS 30.0%
ATGATAAGTCTATGTGTGAA+AGG + chr3_2:66490928-66490947 Msa0418670:CDS 30.0%
TGATAAGTCTATGTGTGAAA+GGG + chr3_2:66490929-66490948 Msa0418670:CDS 30.0%
! AAGATGGTAATGTAGATAGA+AGG + chr3_2:66491075-66491094 Msa0418670:CDS 30.0%
! AGATGGTAATGTAGATAGAA+GGG + chr3_2:66491076-66491095 Msa0418670:CDS 30.0%
ATGCATCATTTAGATCTACA+TGG - chr3_2:66491145-66491164 None:intergenic 30.0%
AATTATGGTACCAAAACTCT+CGG - chr3_2:66491285-66491304 None:intergenic 30.0%
!!! CATTTCATTGGCTCATTTTT+AGG + chr3_2:66491451-66491470 Msa0418670:intron 30.0%
AGAATCCATTATGTCCAATA+AGG + chr3_2:66491555-66491574 Msa0418670:CDS 30.0%
CTTCTTGTTCATTTAGTTGA+CGG + chr3_2:66491620-66491639 Msa0418670:intron 30.0%
!!! CATTACATTGGCTCATTTTT+AGG + chr3_2:66491665-66491684 Msa0418670:intron 30.0%
AGAATCCATTATGTCCAATA+AGG + chr3_2:66491555-66491574 Msa0418670:CDS 30.0%
CTTCTTGTTCATTTAGTTGA+TGG + chr3_2:66491620-66491639 Msa0418670:intron 30.0%
!!! CATTACATTGGCTCATTTTT+AGG + chr3_2:66491665-66491684 Msa0418670:intron 30.0%
AGAATCCATTATGTCCAATA+AGG + chr3_2:66491555-66491574 Msa0418670:CDS 30.0%
GTAACAGTATCAAAAGTTGA+TGG + chr3_2:66490792-66490811 Msa0418670:CDS 30.0%
!! TGATGGTTCTTTTGCTTTTA+AGG + chr3_2:66490809-66490828 Msa0418670:CDS 30.0%
!! TTTTGCTTTTAAGGAAGGAT+GGG + chr3_2:66490818-66490837 Msa0418670:CDS 30.0%
! GCTTGAAAAAGGATATTTTC+TGG + chr3_2:66490863-66490882 Msa0418670:CDS 30.0%
ATGATAAGTCTATGTGTGAA+AGG + chr3_2:66490928-66490947 Msa0418670:CDS 30.0%
TGATAAGTCTATGTGTGAAA+GGG + chr3_2:66490929-66490948 Msa0418670:CDS 30.0%
! AAGATGGTAATGTAGATAGA+AGG + chr3_2:66491075-66491094 Msa0418670:CDS 30.0%
! AGATGGTAATGTAGATAGAA+GGG + chr3_2:66491076-66491095 Msa0418670:CDS 30.0%
ATGCATCATTTAGATCTACA+TGG - chr3_2:66491145-66491164 None:intergenic 30.0%
AATTATGGTACCAAAACTCT+CGG - chr3_2:66491285-66491304 None:intergenic 30.0%
!!! CATTTCATTGGCTCATTTTT+AGG + chr3_2:66491451-66491470 Msa0418670:intron 30.0%
AGAATCCATTATGTCCAATA+AGG + chr3_2:66491555-66491574 Msa0418670:CDS 30.0%
CTTCTTGTTCATTTAGTTGA+CGG + chr3_2:66491620-66491639 Msa0418670:intron 30.0%
!!! CATTACATTGGCTCATTTTT+AGG + chr3_2:66491665-66491684 Msa0418670:intron 30.0%
AGAATCCATTATGTCCAATA+AGG + chr3_2:66491555-66491574 Msa0418670:CDS 30.0%
CTTCTTGTTCATTTAGTTGA+TGG + chr3_2:66491620-66491639 Msa0418670:intron 30.0%
!!! CATTACATTGGCTCATTTTT+AGG + chr3_2:66491665-66491684 Msa0418670:intron 30.0%
AGAATCCATTATGTCCAATA+AGG + chr3_2:66491555-66491574 Msa0418670:CDS 30.0%
! ATGGTAGGATTTAACTTAGG+AGG - chr3_2:66490708-66490727 None:intergenic 35.0%
! GACATGGTAGGATTTAACTT+AGG - chr3_2:66490711-66490730 None:intergenic 35.0%
AAATCCTACCATGTCATTGT+TGG + chr3_2:66490716-66490735 Msa0418670:CDS 35.0%
TGGTAAGAAAATCTATCTCG+AGG + chr3_2:66490740-66490759 Msa0418670:CDS 35.0%
!! GGTTCTTTTGCTTTTAAGGA+AGG + chr3_2:66490813-66490832 Msa0418670:CDS 35.0%
!! CTTTTGCTTTTAAGGAAGGA+TGG + chr3_2:66490817-66490836 Msa0418670:CDS 35.0%
GAAACAAGTTCTACGCTATT+TGG - chr3_2:66491053-66491072 None:intergenic 35.0%
! GTAGAACTTGTTTCAGAAGA+TGG + chr3_2:66491059-66491078 Msa0418670:CDS 35.0%
! TCCTATGTTTGAAGAAGTGT+TGG + chr3_2:66491181-66491200 Msa0418670:CDS 35.0%
!! CCTATGTTTGAAGAAGTGTT+GGG + chr3_2:66491182-66491201 Msa0418670:CDS 35.0%
GTTTATACTTGTAGGGTTTC+AGG + chr3_2:66491366-66491385 Msa0418670:intron 35.0%
! ATGGTAGGATTTAACTTAGG+AGG - chr3_2:66490708-66490727 None:intergenic 35.0%
! GACATGGTAGGATTTAACTT+AGG - chr3_2:66490711-66490730 None:intergenic 35.0%
AAATCCTACCATGTCATTGT+TGG + chr3_2:66490716-66490735 Msa0418670:CDS 35.0%
TGGTAAGAAAATCTATCTCG+AGG + chr3_2:66490740-66490759 Msa0418670:CDS 35.0%
!! GGTTCTTTTGCTTTTAAGGA+AGG + chr3_2:66490813-66490832 Msa0418670:CDS 35.0%
!! CTTTTGCTTTTAAGGAAGGA+TGG + chr3_2:66490817-66490836 Msa0418670:CDS 35.0%
GAAACAAGTTCTACGCTATT+TGG - chr3_2:66491053-66491072 None:intergenic 35.0%
! GTAGAACTTGTTTCAGAAGA+TGG + chr3_2:66491059-66491078 Msa0418670:CDS 35.0%
! TCCTATGTTTGAAGAAGTGT+TGG + chr3_2:66491181-66491200 Msa0418670:CDS 35.0%
!! CCTATGTTTGAAGAAGTGTT+GGG + chr3_2:66491182-66491201 Msa0418670:CDS 35.0%
GTTTATACTTGTAGGGTTTC+AGG + chr3_2:66491366-66491385 Msa0418670:intron 35.0%
CTTACCAACCAACAATGACA+TGG - chr3_2:66490727-66490746 None:intergenic 40.0%
! AGGATGGGATGTTTTCTCAT+CGG + chr3_2:66490833-66490852 Msa0418670:CDS 40.0%
ACTTGATGTGCCAATGCATA+TGG + chr3_2:66491007-66491026 Msa0418670:CDS 40.0%
CTTGATGTGCCAATGCATAT+GGG + chr3_2:66491008-66491027 Msa0418670:CDS 40.0%
TTGATGTGCCAATGCATATG+GGG + chr3_2:66491009-66491028 Msa0418670:CDS 40.0%
CCCAACACTTCTTCAAACAT+AGG - chr3_2:66491185-66491204 None:intergenic 40.0%
! CAACGATTTAGAAGCGTATG+AGG - chr3_2:66491219-66491238 None:intergenic 40.0%
CTCATACGCTTCTAAATCGT+TGG + chr3_2:66491217-66491236 Msa0418670:CDS 40.0%
TTGTAGGGTTTCAGGCATTA+TGG + chr3_2:66491374-66491393 Msa0418670:intron 40.0%
GTGTGATGATTTCCTACAGT+TGG + chr3_2:66491414-66491433 Msa0418670:intron 40.0%
GATCAAGCAGCGAAATTCAA+AGG + chr3_2:66491478-66491497 Msa0418670:CDS 40.0%
GCATGTGAACTTGAAACTTC+TGG + chr3_2:66491517-66491536 Msa0418670:CDS 40.0%
! AACTTCTGGAAGAAGCAAAG+AGG + chr3_2:66491531-66491550 Msa0418670:CDS 40.0%
! ACTTCTGGAAGAAGCAAAGA+GGG + chr3_2:66491532-66491551 Msa0418670:CDS 40.0%
CAGGTCCTTATTGGACATAA+TGG - chr3_2:66491563-66491582 None:intergenic 40.0%
TTCAGCAAACAGGTCCTTAT+TGG - chr3_2:66491572-66491591 None:intergenic 40.0%
! AATAAGGACCTGTTTGCTGA+AGG + chr3_2:66491571-66491590 Msa0418670:CDS 40.0%
GATCAAGCAGCGATATTCAA+AGG + chr3_2:66491692-66491711 Msa0418670:CDS 40.0%
GCATGTGAACTTGAAACTTC+TGG + chr3_2:66491517-66491536 Msa0418670:CDS 40.0%
! AACTTCTGGAAGAAGCAAAG+AGG + chr3_2:66491531-66491550 Msa0418670:CDS 40.0%
! ACTTCTGGAAGAAGCAAAGA+GGG + chr3_2:66491532-66491551 Msa0418670:CDS 40.0%
CAGGTCCTTATTGGACATAA+TGG - chr3_2:66491563-66491582 None:intergenic 40.0%
TTCAGCAAACAGGTCCTTAT+TGG - chr3_2:66491572-66491591 None:intergenic 40.0%
! AATAAGGACCTGTTTGCTGA+AGG + chr3_2:66491571-66491590 Msa0418670:CDS 40.0%
GATCAAGCAGCGATATTCAA+AGG + chr3_2:66491692-66491711 Msa0418670:CDS 40.0%
GCATGTGAACTTGAAACTTC+TGG + chr3_2:66491517-66491536 Msa0418670:CDS 40.0%
! AACTTCTGGAAGAAGCAAAG+AGG + chr3_2:66491531-66491550 Msa0418670:CDS 40.0%
! ACTTCTGGAAGAAGCAAAGA+GGG + chr3_2:66491532-66491551 Msa0418670:CDS 40.0%
CAGGTCCTTATTGGACATAA+TGG - chr3_2:66491563-66491582 None:intergenic 40.0%
TTCAGCAAACAGGTCCTTAT+TGG - chr3_2:66491572-66491591 None:intergenic 40.0%
! AATAAGGACCTGTTTGCTGA+AGG + chr3_2:66491571-66491590 Msa0418670:CDS 40.0%
CTTACCAACCAACAATGACA+TGG - chr3_2:66490727-66490746 None:intergenic 40.0%
! AGGATGGGATGTTTTCTCAT+CGG + chr3_2:66490833-66490852 Msa0418670:CDS 40.0%
ACTTGATGTGCCAATGCATA+TGG + chr3_2:66491007-66491026 Msa0418670:CDS 40.0%
CTTGATGTGCCAATGCATAT+GGG + chr3_2:66491008-66491027 Msa0418670:CDS 40.0%
TTGATGTGCCAATGCATATG+GGG + chr3_2:66491009-66491028 Msa0418670:CDS 40.0%
CCCAACACTTCTTCAAACAT+AGG - chr3_2:66491185-66491204 None:intergenic 40.0%
! CAACGATTTAGAAGCGTATG+AGG - chr3_2:66491219-66491238 None:intergenic 40.0%
CTCATACGCTTCTAAATCGT+TGG + chr3_2:66491217-66491236 Msa0418670:CDS 40.0%
TTGTAGGGTTTCAGGCATTA+TGG + chr3_2:66491374-66491393 Msa0418670:intron 40.0%
GTGTGATGATTTCCTACAGT+TGG + chr3_2:66491414-66491433 Msa0418670:intron 40.0%
GATCAAGCAGCGAAATTCAA+AGG + chr3_2:66491478-66491497 Msa0418670:CDS 40.0%
GCATGTGAACTTGAAACTTC+TGG + chr3_2:66491517-66491536 Msa0418670:CDS 40.0%
! AACTTCTGGAAGAAGCAAAG+AGG + chr3_2:66491531-66491550 Msa0418670:CDS 40.0%
! ACTTCTGGAAGAAGCAAAGA+GGG + chr3_2:66491532-66491551 Msa0418670:CDS 40.0%
CAGGTCCTTATTGGACATAA+TGG - chr3_2:66491563-66491582 None:intergenic 40.0%
TTCAGCAAACAGGTCCTTAT+TGG - chr3_2:66491572-66491591 None:intergenic 40.0%
! AATAAGGACCTGTTTGCTGA+AGG + chr3_2:66491571-66491590 Msa0418670:CDS 40.0%
GATCAAGCAGCGATATTCAA+AGG + chr3_2:66491692-66491711 Msa0418670:CDS 40.0%
GCATGTGAACTTGAAACTTC+TGG + chr3_2:66491517-66491536 Msa0418670:CDS 40.0%
! AACTTCTGGAAGAAGCAAAG+AGG + chr3_2:66491531-66491550 Msa0418670:CDS 40.0%
! ACTTCTGGAAGAAGCAAAGA+GGG + chr3_2:66491532-66491551 Msa0418670:CDS 40.0%
CAGGTCCTTATTGGACATAA+TGG - chr3_2:66491563-66491582 None:intergenic 40.0%
TTCAGCAAACAGGTCCTTAT+TGG - chr3_2:66491572-66491591 None:intergenic 40.0%
! AATAAGGACCTGTTTGCTGA+AGG + chr3_2:66491571-66491590 Msa0418670:CDS 40.0%
GATCAAGCAGCGATATTCAA+AGG + chr3_2:66491692-66491711 Msa0418670:CDS 40.0%
GCATGTGAACTTGAAACTTC+TGG + chr3_2:66491517-66491536 Msa0418670:CDS 40.0%
! AACTTCTGGAAGAAGCAAAG+AGG + chr3_2:66491531-66491550 Msa0418670:CDS 40.0%
! ACTTCTGGAAGAAGCAAAGA+GGG + chr3_2:66491532-66491551 Msa0418670:CDS 40.0%
CAGGTCCTTATTGGACATAA+TGG - chr3_2:66491563-66491582 None:intergenic 40.0%
TTCAGCAAACAGGTCCTTAT+TGG - chr3_2:66491572-66491591 None:intergenic 40.0%
! AATAAGGACCTGTTTGCTGA+AGG + chr3_2:66491571-66491590 Msa0418670:CDS 40.0%
CCAACCAACAATGACATGGT+AGG - chr3_2:66490723-66490742 None:intergenic 45.0%
CCTACCATGTCATTGTTGGT+TGG + chr3_2:66490720-66490739 Msa0418670:CDS 45.0%
AACCTCAACCGGTAAGAGAT+GGG + chr3_2:66490767-66490786 Msa0418670:CDS 45.0%
TGTTACAGCCCATCTCTTAC+CGG - chr3_2:66490778-66490797 None:intergenic 45.0%
TCGGCTCACAAGCTTGAAAA+AGG + chr3_2:66490852-66490871 Msa0418670:CDS 45.0%
AAGAGAAGTAGATGCAGCAG+TGG + chr3_2:66490981-66491000 Msa0418670:CDS 45.0%
TGATGTGCCAATGCATATGG+GGG + chr3_2:66491010-66491029 Msa0418670:CDS 45.0%
ACATCAACCCCCATATGCAT+TGG - chr3_2:66491020-66491039 None:intergenic 45.0%
!! ATGCATATGGGGGTTGATGT+TGG + chr3_2:66491020-66491039 Msa0418670:CDS 45.0%
!! TTTGAAGAAGTGTTGGGCTC+AGG + chr3_2:66491188-66491207 Msa0418670:CDS 45.0%
!! TTGAAGAAGTGTTGGGCTCA+GGG + chr3_2:66491189-66491208 Msa0418670:CDS 45.0%
TACCAAAACTCTCGGTGACT+TGG - chr3_2:66491277-66491296 None:intergenic 45.0%
TACCTAAGCCTTCAGCAAAC+AGG - chr3_2:66491582-66491601 None:intergenic 45.0%
TACCTAAGCCTTCAGCAAAC+AGG - chr3_2:66491582-66491601 None:intergenic 45.0%
TACCTAAGCCTTCAGCAAAC+AGG - chr3_2:66491582-66491601 None:intergenic 45.0%
CCAACCAACAATGACATGGT+AGG - chr3_2:66490723-66490742 None:intergenic 45.0%
CCTACCATGTCATTGTTGGT+TGG + chr3_2:66490720-66490739 Msa0418670:CDS 45.0%
AACCTCAACCGGTAAGAGAT+GGG + chr3_2:66490767-66490786 Msa0418670:CDS 45.0%
TGTTACAGCCCATCTCTTAC+CGG - chr3_2:66490778-66490797 None:intergenic 45.0%
TCGGCTCACAAGCTTGAAAA+AGG + chr3_2:66490852-66490871 Msa0418670:CDS 45.0%
AAGAGAAGTAGATGCAGCAG+TGG + chr3_2:66490981-66491000 Msa0418670:CDS 45.0%
TGATGTGCCAATGCATATGG+GGG + chr3_2:66491010-66491029 Msa0418670:CDS 45.0%
ACATCAACCCCCATATGCAT+TGG - chr3_2:66491020-66491039 None:intergenic 45.0%
!! ATGCATATGGGGGTTGATGT+TGG + chr3_2:66491020-66491039 Msa0418670:CDS 45.0%
!! TTTGAAGAAGTGTTGGGCTC+AGG + chr3_2:66491188-66491207 Msa0418670:CDS 45.0%
!! TTGAAGAAGTGTTGGGCTCA+GGG + chr3_2:66491189-66491208 Msa0418670:CDS 45.0%
TACCAAAACTCTCGGTGACT+TGG - chr3_2:66491277-66491296 None:intergenic 45.0%
TACCTAAGCCTTCAGCAAAC+AGG - chr3_2:66491582-66491601 None:intergenic 45.0%
TACCTAAGCCTTCAGCAAAC+AGG - chr3_2:66491582-66491601 None:intergenic 45.0%
TACCTAAGCCTTCAGCAAAC+AGG - chr3_2:66491582-66491601 None:intergenic 45.0%
CTCGAGGATTCAACCTCAAC+CGG + chr3_2:66490756-66490775 Msa0418670:CDS 50.0%
CAACCTCAACCGGTAAGAGA+TGG + chr3_2:66490766-66490785 Msa0418670:CDS 50.0%
!! CATATGGGGGTTGATGTTGG+TGG + chr3_2:66491023-66491042 Msa0418670:CDS 50.0%
!! TGAAGAAGTGTTGGGCTCAG+GGG + chr3_2:66491190-66491209 Msa0418670:CDS 50.0%
! AGCCAAGTCACCGAGAGTTT+TGG + chr3_2:66491272-66491291 Msa0418670:CDS 50.0%
! GACCTGTTTGCTGAAGGCTT+AGG + chr3_2:66491577-66491596 Msa0418670:CDS 50.0%
! GACCTGTTTGCTGAAGGCTT+AGG + chr3_2:66491577-66491596 Msa0418670:CDS 50.0%
! GACCTGTTTGCTGAAGGCTT+AGG + chr3_2:66491577-66491596 Msa0418670:CDS 50.0%
CTCGAGGATTCAACCTCAAC+CGG + chr3_2:66490756-66490775 Msa0418670:CDS 50.0%
CAACCTCAACCGGTAAGAGA+TGG + chr3_2:66490766-66490785 Msa0418670:CDS 50.0%
!! CATATGGGGGTTGATGTTGG+TGG + chr3_2:66491023-66491042 Msa0418670:CDS 50.0%
!! TGAAGAAGTGTTGGGCTCAG+GGG + chr3_2:66491190-66491209 Msa0418670:CDS 50.0%
! AGCCAAGTCACCGAGAGTTT+TGG + chr3_2:66491272-66491291 Msa0418670:CDS 50.0%
! GACCTGTTTGCTGAAGGCTT+AGG + chr3_2:66491577-66491596 Msa0418670:CDS 50.0%
! GACCTGTTTGCTGAAGGCTT+AGG + chr3_2:66491577-66491596 Msa0418670:CDS 50.0%
! GACCTGTTTGCTGAAGGCTT+AGG + chr3_2:66491577-66491596 Msa0418670:CDS 50.0%
! AGCCCATCTCTTACCGGTTG+AGG - chr3_2:66490772-66490791 None:intergenic 55.0%
! AGCCCATCTCTTACCGGTTG+AGG - chr3_2:66490772-66490791 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 66490699 66492067 66490699 ID=Msa0418670;Name=Msa0418670
chr3_2 mRNA 66490699 66492067 66490699 ID=Msa0418670-mRNA-1;Parent=Msa0418670;Name=Msa0418670-mRNA-1;_AED=0.19;_eAED=0.21;_QI=0|1|0.25|1|1|1|4|0|337
chr3_2 exon 66490699 66491293 66490699 ID=Msa0418670-mRNA-1:exon:15295;Parent=Msa0418670-mRNA-1
chr3_2 exon 66491473 66491598 66491473 ID=Msa0418670-mRNA-1:exon:15296;Parent=Msa0418670-mRNA-1
chr3_2 exon 66491687 66491812 66491687 ID=Msa0418670-mRNA-1:exon:15297;Parent=Msa0418670-mRNA-1
chr3_2 exon 66491901 66492067 66491901 ID=Msa0418670-mRNA-1:exon:15298;Parent=Msa0418670-mRNA-1
chr3_2 CDS 66490699 66491293 66490699 ID=Msa0418670-mRNA-1:cds;Parent=Msa0418670-mRNA-1
chr3_2 CDS 66491473 66491598 66491473 ID=Msa0418670-mRNA-1:cds;Parent=Msa0418670-mRNA-1
chr3_2 CDS 66491687 66491812 66491687 ID=Msa0418670-mRNA-1:cds;Parent=Msa0418670-mRNA-1
chr3_2 CDS 66491901 66492067 66491901 ID=Msa0418670-mRNA-1:cds;Parent=Msa0418670-mRNA-1
Gene Sequence

>Msa0418670

GATCTTCCTCCTAAGTTAAATCCTACCATGTCATTGTTGGTTGGTAAGAAAATCTATCTCGAGGATTCAACCTCAACCGGTAAGAGATGGGCTGTAACAGTATCAAAAGTTGATGGTTCTTTTGCTTTTAAGGAAGGATGGGATGTTTTCTCATCGGCTCACAAGCTTGAAAAAGGATATTTTCTGGTATTCAATTGCACTAACAAGTATAGCTTTGATGTTAAGATCTATGATAAGTCTATGTGTGAAAGGGTTGATTTTTCTGAAAAAAGAAAGAGGAAAAAGAGAAGTAGATGCAGCAGTGGCTCACTTGATGTGCCAATGCATATGGGGGTTGATGTTGGTGGAACACCAAATAGCGTAGAACTTGTTTCAGAAGATGGTAATGTAGATAGAAGGGTGAAATCTTTGCGCACATTAGAAGACATGTGTTACATAAAAAACCATGTAGATCTAAATGATGCATCTGTTTTTAACAATGATCCTATGTTTGAAGAAGTGTTGGGCTCAGGGGATACCTCATACGCTTCTAAATCGTTGGAAAGAAAAGATTTTTTGTGTCAAGTTCAAGATAGCCAAGTCACCGAGAGTTTTGGAAGTGATCAAGCAGCGAAATTCAAAGGAAAACATGTTTCATTTGCATGTGAACTTGAAACTTCTGGAAGAAGCAAAGAGGGAGAATCCATTATGTCCAATAAGGACCTGTTTGCTGAAGGCTTAGGAAGTGATCAAGCAGCGATATTCAAAGGAAAACATGTTTCATTTGCATGTGAACTTGAAACTTCTGGAAGAAGCAAAGAGGGAGAATCCATTATGTCCAATAAGGACCTGTTTGCTGAAGGCTTAGGAAGTGATCAAGCAGCGATATTCAAAGGAAAACATGTTTCATTTGCATGTGAACTTGAAACTTCTGGAAGAAGCAAAGAGGGAGAATCCATTATGTCCAATAAGGACCTGTTTGCTGAAGGCTTAGGTACTTCATTTAACAAAATAGATTCTTGTTCATTTTGTTGA
Protein sequence

>Msa0418670

DLPPKLNPTMSLLVGKKIYLEDSTSTGKRWAVTVSKVDGSFAFKEGWDVFSSAHKLEKGYFLVFNCTNKYSFDVKIYDKSMCERVDFSEKRKRKKRSRCSSGSLDVPMHMGVDVGGTPNSVELVSEDGNVDRRVKSLRTLEDMCYIKNHVDLNDASVFNNDPMFEEVLGSGDTSYASKSLERKDFLCQVQDSQVTESFGSDQAAKFKGKHVSFACELETSGRSKEGESIMSNKDLFAEGLGSDQAAIFKGKHVSFACELETSGRSKEGESIMSNKDLFAEGLGSDQAAIFKGKHVSFACELETSGRSKEGESIMSNKDLFAEGLGTSFNKIDSCSFC*