AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0418850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0418850 MtrunA17_Chr3g0116501 92.500 200 15 0 35 234 1 200 1.05e-138 390
Msa0418850 MtrunA17_Chr4g0058071 55.957 277 119 2 8 281 59 335 4.84e-112 328
Msa0418850 MtrunA17_Chr5g0401281 38.672 256 156 1 7 261 108 363 1.89e-64 207
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0418850 AT3G48360.1 49.077 271 127 3 8 267 80 350 1.61e-85 261
Msa0418850 AT5G63160.1 47.987 298 143 4 3 291 65 359 2.83e-83 256
Msa0418850 AT3G48360.2 50.211 237 108 2 8 234 80 316 4.59e-76 236
Msa0418850 AT3G48360.3 50.000 244 111 3 35 267 1 244 8.84e-76 233
Msa0418850 AT5G63160.2 49.583 240 113 2 3 234 65 304 4.52e-75 233
Msa0418850 AT5G63160.3 48.889 270 126 4 31 291 8 274 8.00e-75 231
Msa0418850 AT4G37610.1 39.147 258 152 5 7 261 96 351 4.06e-58 191
Msa0418850 AT1G05690.1 38.849 278 162 5 5 278 91 364 6.97e-58 190
Msa0418850 AT5G67480.2 38.521 257 154 4 8 261 113 368 4.24e-57 189
Msa0418850 AT5G67480.1 38.521 257 154 4 8 261 102 357 4.34e-57 188
Msa0418850 AT5G67480.3 38.521 257 154 4 8 261 102 357 4.34e-57 188

Find 81 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCACCGCTTCGAAATTAT+TGG 0.158196 3_2:+66676942 None:intergenic
CTCCACATGTCAAGCTTTGC+AGG 0.259755 3_2:-66676599 Msa0418850:CDS
AATGCACCTTTGCTTTAGTT+TGG 0.301923 3_2:+66677071 None:intergenic
CATGCAAGGTTCCTCTTTGC+AGG 0.318663 3_2:-66676462 Msa0418850:intron
TACATTTCATCTACACTTCC+AGG 0.332926 3_2:-66677370 Msa0418850:intron
CATTCCCCGTGGTCATGAAT+TGG 0.355331 3_2:+66677037 None:intergenic
ATCATATGATGTGGAGATTA+CGG 0.355897 3_2:-66676641 Msa0418850:CDS
AAGTGAAGCTGTACAATGTT+TGG 0.366740 3_2:-66676698 Msa0418850:CDS
ATGCACCTTTGCTTTAGTTT+GGG 0.372763 3_2:+66677072 None:intergenic
TTGGAGCATATATGTATAGA+AGG 0.393017 3_2:-66676679 Msa0418850:CDS
ACACACTTGAAGTAGAGATT+TGG 0.400686 3_2:+66676976 None:intergenic
AACACTTTACCACATGTAAT+AGG 0.401202 3_2:-66676567 Msa0418850:CDS
AGTCAAGAGAGTCTTCTAAT+TGG 0.402862 3_2:-66675673 Msa0418850:CDS
CAAGGAGAGATGAGGTAATT+CGG 0.402906 3_2:-66675724 Msa0418850:CDS
TCATATGATGTGGAGATTAC+GGG 0.403872 3_2:-66676640 Msa0418850:CDS
GAGGAACCTTGCATGTATCT+TGG 0.405123 3_2:+66676470 None:intergenic
CCTTGTTCTTAGCAATTGTA+AGG 0.426160 3_2:+66675742 None:intergenic
TGGGACTATGCAGGTGCACC+AGG 0.454793 3_2:-66677152 Msa0418850:intron
GAAGAGAGGAAATAAACATA+GGG 0.473780 3_2:-66676746 Msa0418850:CDS
AGAAGAGAGGAAATAAACAT+AGG 0.475467 3_2:-66676747 Msa0418850:CDS
GAATACTAGAGTAGAGGAAG+AGG 0.495047 3_2:-66675702 Msa0418850:CDS
CAAGAGAGTCTTCTAATTGG+TGG 0.514114 3_2:-66675670 Msa0418850:CDS
AACGGTAACGTTAAAATATG+TGG 0.514946 3_2:-66677422 Msa0418850:CDS
AAGGCGATGGCTGCATTGGT+TGG 0.517717 3_2:+66677395 None:intergenic
TCCACATGTCAAGCTTTGCA+GGG 0.524594 3_2:-66676598 Msa0418850:CDS
ATTCTTGTTCTTTGTTGAGA+CGG 0.526823 3_2:+66676860 None:intergenic
CAATAATTTCGAAGCGGTGA+AGG 0.537239 3_2:-66676941 Msa0418850:CDS
TTGATCCAATTCATGACCAC+GGG 0.542240 3_2:-66677042 Msa0418850:CDS
TATTGCATAAACATGACCCT+TGG 0.542900 3_2:-66676900 Msa0418850:CDS
CCTTACAATTGCTAAGAACA+AGG 0.544404 3_2:-66675742 Msa0418850:CDS
TCTCAACAAAGAACAAGAAT+CGG 0.545703 3_2:-66676857 Msa0418850:intron
TACGAGGTGGAAACAAATAG+TGG 0.546964 3_2:-66675795 Msa0418850:CDS
TACAAAGGCGATGGCTGCAT+TGG 0.548314 3_2:+66677391 None:intergenic
CCACATGTCAAGCTTTGCAG+GGG 0.564441 3_2:-66676597 Msa0418850:CDS
GATAGCTGAGAAAGAGAACA+AGG 0.575893 3_2:-66675825 Msa0418850:CDS
ATGATGTCAACTTCGAGCCA+AGG 0.576653 3_2:+66676883 None:intergenic
ATCTTGGTTAAAGCAAATGC+AGG 0.578550 3_2:+66676486 None:intergenic
ATTCATGACCACGGGGAATG+TGG 0.583872 3_2:-66677034 Msa0418850:CDS
TGTAATAGGAGACTCGAGAG+AGG 0.587137 3_2:-66676553 Msa0418850:CDS
TGATGTCAACTTCGAGCCAA+GGG 0.587603 3_2:+66676884 None:intergenic
AAAGAAATGGTAACGTCCAA+CGG 0.587929 3_2:-66677440 None:intergenic
TGTGGTGGACGTGTTGCACT+TGG 0.589909 3_2:-66677016 Msa0418850:CDS
ACGAGGTGGAAACAAATAGT+GGG 0.591901 3_2:-66675794 Msa0418850:CDS
CCCCTGCAAAGCTTGACATG+TGG 0.598401 3_2:+66676597 None:intergenic
TGTTTCGCATACCTGCAAAG+AGG 0.600432 3_2:+66676451 None:intergenic
CAATGCCCAAACTAAAGCAA+AGG 0.601233 3_2:-66677077 Msa0418850:CDS
TTGTAAGGAAGACATGGCTA+TGG 0.601532 3_2:+66675757 None:intergenic
GCTGAGAAAGAGAACAAGGA+AGG 0.604375 3_2:-66675821 Msa0418850:CDS
CAACGTGGCATCATATGATG+TGG 0.607548 3_2:-66676650 Msa0418850:CDS
AATTCGGAATACTAGAGTAG+AGG 0.608608 3_2:-66675708 Msa0418850:CDS
CTCGAGTCTCCTATTACATG+TGG 0.612075 3_2:+66676558 None:intergenic
TAGCAATTGTAAGGAAGACA+TGG 0.614161 3_2:+66675751 None:intergenic
GAAGCGGTGAAGGAAACAGA+GGG 0.616249 3_2:-66676931 Msa0418850:CDS
GGAGACTCGAGAGAGGGTGT+AGG 0.617740 3_2:-66676546 Msa0418850:CDS
CTTTAACCAAGATACATGCA+AGG 0.621392 3_2:-66676476 Msa0418850:CDS
GAGAGGAAATAAACATAGGG+AGG 0.621519 3_2:-66676743 Msa0418850:CDS
CTTGATCCAATTCATGACCA+CGG 0.630679 3_2:-66677043 Msa0418850:CDS
CATATGATGTGGAGATTACG+GGG 0.632166 3_2:-66676639 Msa0418850:CDS
CATGACCACGGGGAATGTGG+TGG 0.632280 3_2:-66677031 Msa0418850:CDS
GTAGGTGTTGTAAGTCTATG+TGG 0.636359 3_2:-66676528 Msa0418850:CDS
GTGAAACAGAGGAAGAAGAG+AGG 0.641073 3_2:-66676760 Msa0418850:intron
GCTAAGAACAAGGAGAGATG+AGG 0.646165 3_2:-66675732 Msa0418850:CDS
CGGTGAAGGAAACAGAGGGG+TGG 0.647649 3_2:-66676927 Msa0418850:CDS
AGTGTAGATGAAATGTACAA+AGG 0.647924 3_2:+66677376 None:intergenic
AGTTACCAATAATTTCGAAG+CGG 0.654751 3_2:-66676947 Msa0418850:CDS
ACAAGGAAGGTGATACGAGG+TGG 0.662953 3_2:-66675808 Msa0418850:CDS
CATGTGGAGAATTTAGTACA+CGG 0.664071 3_2:+66676613 None:intergenic
CACATCATATGATGCCACGT+TGG 0.666948 3_2:+66676651 None:intergenic
GATGAAATGTACAAAGGCGA+TGG 0.667885 3_2:+66677382 None:intergenic
GTAATAGGAGACTCGAGAGA+GGG 0.668774 3_2:-66676552 Msa0418850:CDS
CGAAGCGGTGAAGGAAACAG+AGG 0.673165 3_2:-66676932 Msa0418850:CDS
CGAGGTGGAAACAAATAGTG+GGG 0.698764 3_2:-66675793 Msa0418850:CDS
TATAGAAGGTTGCACCAACG+TGG 0.704940 3_2:-66676665 Msa0418850:CDS
GGGACTATGCAGGTGCACCA+GGG 0.706898 3_2:-66677151 Msa0418850:intron
CACGTCCACCACATTCCCCG+TGG 0.707824 3_2:+66677026 None:intergenic
AGACATGCGAGAGTACGAGA+AGG 0.722702 3_2:+66677103 None:intergenic
ACTATGCAGGTGCACCAGGG+AGG 0.723071 3_2:-66677148 Msa0418850:intron
AGAACAAGGAAGGTGATACG+AGG 0.743284 3_2:-66675811 Msa0418850:CDS
ATGATGTGGAGATTACGGGG+AGG 0.765492 3_2:-66676636 Msa0418850:CDS
AAGCGGTGAAGGAAACAGAG+GGG 0.771640 3_2:-66676930 Msa0418850:CDS
TGATCCAATTCATGACCACG+GGG 0.774666 3_2:-66677041 Msa0418850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTGAATTAACAAATTTTT+TGG - chr3_2:66675772-66675791 Msa0418850:CDS 10.0%
!! TATATATTTCTTTAATAAGT+TGG - chr3_2:66676281-66676300 Msa0418850:intron 10.0%
!!! ACTTTTTCATATAAAAAAAA+AGG - chr3_2:66676672-66676691 Msa0418850:CDS 10.0%
!!! AATTGAATTAACAAATTTTT+TGG - chr3_2:66675772-66675791 Msa0418850:CDS 10.0%
!! TATATATTTCTTTAATAAGT+TGG - chr3_2:66676281-66676300 Msa0418850:intron 10.0%
!!! ACTTTTTCATATAAAAAAAA+AGG - chr3_2:66676672-66676691 Msa0418850:CDS 10.0%
!!! GTTATTAATCGTTATTATTT+TGG - chr3_2:66676778-66676797 Msa0418850:intron 15.0%
!!! GTTATTAATCGTTATTATTT+TGG - chr3_2:66676778-66676797 Msa0418850:intron 15.0%
!!! TAGTTACTAGTTTTCATTTA+GGG - chr3_2:66677172-66677191 Msa0418850:intron 20.0%
!! GGTTAATAAAGCTATATTTA+CGG - chr3_2:66677200-66677219 Msa0418850:intron 20.0%
!!! TAGTTACTAGTTTTCATTTA+GGG - chr3_2:66677172-66677191 Msa0418850:intron 20.0%
!! GGTTAATAAAGCTATATTTA+CGG - chr3_2:66677200-66677219 Msa0418850:intron 20.0%
!! GGTCTAAATACATCAATTTT+CGG - chr3_2:66675793-66675812 Msa0418850:CDS 25.0%
!!! TTCTTTAATAAGTTGGTGAT+CGG - chr3_2:66676288-66676307 Msa0418850:intron 25.0%
! AAACAAATAATAACTACAGC+TGG - chr3_2:66676697-66676716 Msa0418850:CDS 25.0%
! TGACTAATTGAGGAATATAA+TGG - chr3_2:66676879-66676898 Msa0418850:CDS 25.0%
!!! CTTTGAAATTAACCATGAAT+GGG - chr3_2:66676950-66676969 Msa0418850:CDS 25.0%
!!! GTAGTTACTAGTTTTCATTT+AGG - chr3_2:66677171-66677190 Msa0418850:intron 25.0%
!!! TAGTTTTCATTTAGGGTATT+TGG - chr3_2:66677179-66677198 Msa0418850:intron 25.0%
!! GGTCTAAATACATCAATTTT+CGG - chr3_2:66675793-66675812 Msa0418850:CDS 25.0%
!!! TTCTTTAATAAGTTGGTGAT+CGG - chr3_2:66676288-66676307 Msa0418850:intron 25.0%
! AAACAAATAATAACTACAGC+TGG - chr3_2:66676697-66676716 Msa0418850:CDS 25.0%
! TGACTAATTGAGGAATATAA+TGG - chr3_2:66676879-66676898 Msa0418850:CDS 25.0%
!!! CTTTGAAATTAACCATGAAT+GGG - chr3_2:66676950-66676969 Msa0418850:CDS 25.0%
!!! GTAGTTACTAGTTTTCATTT+AGG - chr3_2:66677171-66677190 Msa0418850:intron 25.0%
!!! TAGTTTTCATTTAGGGTATT+TGG - chr3_2:66677179-66677198 Msa0418850:intron 25.0%
!!! ACATATTTTAACGTTACCGT+TGG + chr3_2:66675650-66675669 None:intergenic 30.0%
AACGGTAACGTTAAAATATG+TGG - chr3_2:66675649-66675668 Msa0418850:CDS 30.0%
AGTGTAGATGAAATGTACAA+AGG + chr3_2:66675698-66675717 None:intergenic 30.0%
TAATTTCACTATTACTGACC+TGG + chr3_2:66675722-66675741 None:intergenic 30.0%
!!! CATTGTCTTTTTTTGTCAAG+TGG + chr3_2:66675881-66675900 None:intergenic 30.0%
CACTTGACAAAAAAAGACAA+TGG - chr3_2:66675879-66675898 Msa0418850:intron 30.0%
ATAGTCCCAATCAATTCTTA+GGG + chr3_2:66675908-66675927 None:intergenic 30.0%
! ATAATTTTTCATATCCTCCC+TGG + chr3_2:66675940-66675959 None:intergenic 30.0%
AGGGAGGATATGAAAAATTA+TGG - chr3_2:66675939-66675958 Msa0418850:intron 30.0%
AGTTACCAATAATTTCGAAG+CGG - chr3_2:66676124-66676143 Msa0418850:intron 30.0%
ATTCTTGTTCTTTGTTGAGA+CGG + chr3_2:66676214-66676233 None:intergenic 30.0%
TCTCAACAAAGAACAAGAAT+CGG - chr3_2:66676214-66676233 Msa0418850:intron 30.0%
!! TCTTTAATAAGTTGGTGATC+GGG - chr3_2:66676289-66676308 Msa0418850:intron 30.0%
AGAAGAGAGGAAATAAACAT+AGG - chr3_2:66676324-66676343 Msa0418850:intron 30.0%
GAAGAGAGGAAATAAACATA+GGG - chr3_2:66676325-66676344 Msa0418850:intron 30.0%
TTGGAGCATATATGTATAGA+AGG - chr3_2:66676392-66676411 Msa0418850:intron 30.0%
ATCATATGATGTGGAGATTA+CGG - chr3_2:66676430-66676449 Msa0418850:intron 30.0%
AACACTTTACCACATGTAAT+AGG - chr3_2:66676504-66676523 Msa0418850:CDS 30.0%
AAGTAGCAATTGACTAATTG+AGG - chr3_2:66676869-66676888 Msa0418850:CDS 30.0%
CCATTCATGGTTAATTTCAA+AGG + chr3_2:66676952-66676971 None:intergenic 30.0%
!! CCTTTGAAATTAACCATGAA+TGG - chr3_2:66676949-66676968 Msa0418850:CDS 30.0%
TTGTATGATATACCCATTCA+TGG + chr3_2:66676965-66676984 None:intergenic 30.0%
!! TGGCATATTTTTACATTCGT+TGG - chr3_2:66677012-66677031 Msa0418850:CDS 30.0%
!! GGCATATTTTTACATTCGTT+GGG - chr3_2:66677013-66677032 Msa0418850:CDS 30.0%
ATAATGTATACGTACCATGT+TGG + chr3_2:66677056-66677075 None:intergenic 30.0%
CATGGTACGTATACATTATA+TGG - chr3_2:66677057-66677076 Msa0418850:CDS 30.0%
GACTAACTCACTAAAATGTT+TGG + chr3_2:66677124-66677143 None:intergenic 30.0%
TATATTTACGGAAATGTGAC+AGG - chr3_2:66677212-66677231 Msa0418850:intron 30.0%
!!! ACATATTTTAACGTTACCGT+TGG + chr3_2:66675650-66675669 None:intergenic 30.0%
AACGGTAACGTTAAAATATG+TGG - chr3_2:66675649-66675668 Msa0418850:CDS 30.0%
AGTGTAGATGAAATGTACAA+AGG + chr3_2:66675698-66675717 None:intergenic 30.0%
TAATTTCACTATTACTGACC+TGG + chr3_2:66675722-66675741 None:intergenic 30.0%
!!! CATTGTCTTTTTTTGTCAAG+TGG + chr3_2:66675881-66675900 None:intergenic 30.0%
CACTTGACAAAAAAAGACAA+TGG - chr3_2:66675879-66675898 Msa0418850:intron 30.0%
ATAGTCCCAATCAATTCTTA+GGG + chr3_2:66675908-66675927 None:intergenic 30.0%
! ATAATTTTTCATATCCTCCC+TGG + chr3_2:66675940-66675959 None:intergenic 30.0%
AGGGAGGATATGAAAAATTA+TGG - chr3_2:66675939-66675958 Msa0418850:intron 30.0%
AGTTACCAATAATTTCGAAG+CGG - chr3_2:66676124-66676143 Msa0418850:intron 30.0%
ATTCTTGTTCTTTGTTGAGA+CGG + chr3_2:66676214-66676233 None:intergenic 30.0%
TCTCAACAAAGAACAAGAAT+CGG - chr3_2:66676214-66676233 Msa0418850:intron 30.0%
!! TCTTTAATAAGTTGGTGATC+GGG - chr3_2:66676289-66676308 Msa0418850:intron 30.0%
AGAAGAGAGGAAATAAACAT+AGG - chr3_2:66676324-66676343 Msa0418850:intron 30.0%
GAAGAGAGGAAATAAACATA+GGG - chr3_2:66676325-66676344 Msa0418850:intron 30.0%
TTGGAGCATATATGTATAGA+AGG - chr3_2:66676392-66676411 Msa0418850:intron 30.0%
ATCATATGATGTGGAGATTA+CGG - chr3_2:66676430-66676449 Msa0418850:intron 30.0%
AACACTTTACCACATGTAAT+AGG - chr3_2:66676504-66676523 Msa0418850:CDS 30.0%
AAGTAGCAATTGACTAATTG+AGG - chr3_2:66676869-66676888 Msa0418850:CDS 30.0%
CCATTCATGGTTAATTTCAA+AGG + chr3_2:66676952-66676971 None:intergenic 30.0%
!! CCTTTGAAATTAACCATGAA+TGG - chr3_2:66676949-66676968 Msa0418850:CDS 30.0%
TTGTATGATATACCCATTCA+TGG + chr3_2:66676965-66676984 None:intergenic 30.0%
!! TGGCATATTTTTACATTCGT+TGG - chr3_2:66677012-66677031 Msa0418850:CDS 30.0%
!! GGCATATTTTTACATTCGTT+GGG - chr3_2:66677013-66677032 Msa0418850:CDS 30.0%
ATAATGTATACGTACCATGT+TGG + chr3_2:66677056-66677075 None:intergenic 30.0%
CATGGTACGTATACATTATA+TGG - chr3_2:66677057-66677076 Msa0418850:CDS 30.0%
GACTAACTCACTAAAATGTT+TGG + chr3_2:66677124-66677143 None:intergenic 30.0%
TATATTTACGGAAATGTGAC+AGG - chr3_2:66677212-66677231 Msa0418850:intron 30.0%
TACATTTCATCTACACTTCC+AGG - chr3_2:66675701-66675720 Msa0418850:CDS 35.0%
! TTTTTGTCAAGTGGATGAGT+GGG + chr3_2:66675872-66675891 None:intergenic 35.0%
!!! TTTTTTGTCAAGTGGATGAG+TGG + chr3_2:66675873-66675892 None:intergenic 35.0%
CATAGTCCCAATCAATTCTT+AGG + chr3_2:66675909-66675928 None:intergenic 35.0%
! ATGCACCTTTGCTTTAGTTT+GGG + chr3_2:66676002-66676021 None:intergenic 35.0%
AATGCACCTTTGCTTTAGTT+TGG + chr3_2:66676003-66676022 None:intergenic 35.0%
ACACACTTGAAGTAGAGATT+TGG + chr3_2:66676098-66676117 None:intergenic 35.0%
TATTGCATAAACATGACCCT+TGG - chr3_2:66676171-66676190 Msa0418850:intron 35.0%
AAGTGAAGCTGTACAATGTT+TGG - chr3_2:66676373-66676392 Msa0418850:intron 35.0%
TCATATGATGTGGAGATTAC+GGG - chr3_2:66676431-66676450 Msa0418850:intron 35.0%
CATGTGGAGAATTTAGTACA+CGG + chr3_2:66676461-66676480 None:intergenic 35.0%
ATCTTGGTTAAAGCAAATGC+AGG + chr3_2:66676588-66676607 None:intergenic 35.0%
CTTTAACCAAGATACATGCA+AGG - chr3_2:66676595-66676614 Msa0418850:CDS 35.0%
ACAAAGTGACAAAACCAACA+TGG - chr3_2:66677039-66677058 Msa0418850:CDS 35.0%
TAGCAATTGTAAGGAAGACA+TGG + chr3_2:66677323-66677342 None:intergenic 35.0%
CCTTGTTCTTAGCAATTGTA+AGG + chr3_2:66677332-66677351 None:intergenic 35.0%
CCTTACAATTGCTAAGAACA+AGG - chr3_2:66677329-66677348 Msa0418850:intron 35.0%
AATTCGGAATACTAGAGTAG+AGG - chr3_2:66677363-66677382 Msa0418850:intron 35.0%
AGTCAAGAGAGTCTTCTAAT+TGG - chr3_2:66677398-66677417 Msa0418850:CDS 35.0%
! CAAATGCAATTGCACGTTTT+CGG - chr3_2:66677425-66677444 Msa0418850:CDS 35.0%
TACATTTCATCTACACTTCC+AGG - chr3_2:66675701-66675720 Msa0418850:CDS 35.0%
! TTTTTGTCAAGTGGATGAGT+GGG + chr3_2:66675872-66675891 None:intergenic 35.0%
!!! TTTTTTGTCAAGTGGATGAG+TGG + chr3_2:66675873-66675892 None:intergenic 35.0%
CATAGTCCCAATCAATTCTT+AGG + chr3_2:66675909-66675928 None:intergenic 35.0%
! ATGCACCTTTGCTTTAGTTT+GGG + chr3_2:66676002-66676021 None:intergenic 35.0%
AATGCACCTTTGCTTTAGTT+TGG + chr3_2:66676003-66676022 None:intergenic 35.0%
ACACACTTGAAGTAGAGATT+TGG + chr3_2:66676098-66676117 None:intergenic 35.0%
TATTGCATAAACATGACCCT+TGG - chr3_2:66676171-66676190 Msa0418850:intron 35.0%
AAGTGAAGCTGTACAATGTT+TGG - chr3_2:66676373-66676392 Msa0418850:intron 35.0%
TCATATGATGTGGAGATTAC+GGG - chr3_2:66676431-66676450 Msa0418850:intron 35.0%
CATGTGGAGAATTTAGTACA+CGG + chr3_2:66676461-66676480 None:intergenic 35.0%
ATCTTGGTTAAAGCAAATGC+AGG + chr3_2:66676588-66676607 None:intergenic 35.0%
CTTTAACCAAGATACATGCA+AGG - chr3_2:66676595-66676614 Msa0418850:CDS 35.0%
ACAAAGTGACAAAACCAACA+TGG - chr3_2:66677039-66677058 Msa0418850:CDS 35.0%
TAGCAATTGTAAGGAAGACA+TGG + chr3_2:66677323-66677342 None:intergenic 35.0%
CCTTGTTCTTAGCAATTGTA+AGG + chr3_2:66677332-66677351 None:intergenic 35.0%
CCTTACAATTGCTAAGAACA+AGG - chr3_2:66677329-66677348 Msa0418850:intron 35.0%
AATTCGGAATACTAGAGTAG+AGG - chr3_2:66677363-66677382 Msa0418850:intron 35.0%
AGTCAAGAGAGTCTTCTAAT+TGG - chr3_2:66677398-66677417 Msa0418850:CDS 35.0%
! CAAATGCAATTGCACGTTTT+CGG - chr3_2:66677425-66677444 Msa0418850:CDS 35.0%
GATGAAATGTACAAAGGCGA+TGG + chr3_2:66675692-66675711 None:intergenic 40.0%
TGGTGACCCTAAGAATTGAT+TGG - chr3_2:66675899-66675918 Msa0418850:intron 40.0%
GGTGACCCTAAGAATTGATT+GGG - chr3_2:66675900-66675919 Msa0418850:intron 40.0%
AGAATTGATTGGGACTATGC+AGG - chr3_2:66675910-66675929 Msa0418850:intron 40.0%
CAATGCCCAAACTAAAGCAA+AGG - chr3_2:66675994-66676013 Msa0418850:intron 40.0%
CTTGATCCAATTCATGACCA+CGG - chr3_2:66676028-66676047 Msa0418850:intron 40.0%
TTGATCCAATTCATGACCAC+GGG - chr3_2:66676029-66676048 Msa0418850:intron 40.0%
CTTCACCGCTTCGAAATTAT+TGG + chr3_2:66676132-66676151 None:intergenic 40.0%
CAATAATTTCGAAGCGGTGA+AGG - chr3_2:66676130-66676149 Msa0418850:intron 40.0%
GAGAGGAAATAAACATAGGG+AGG - chr3_2:66676328-66676347 Msa0418850:intron 40.0%
CATATGATGTGGAGATTACG+GGG - chr3_2:66676432-66676451 Msa0418850:intron 40.0%
! GTAGGTGTTGTAAGTCTATG+TGG - chr3_2:66676543-66676562 Msa0418850:CDS 40.0%
CATGTAGCTAACTACTAACG+TGG - chr3_2:66676992-66677011 Msa0418850:CDS 40.0%
GATAGCTGAGAAAGAGAACA+AGG - chr3_2:66677246-66677265 Msa0418850:intron 40.0%
TACGAGGTGGAAACAAATAG+TGG - chr3_2:66677276-66677295 Msa0418850:intron 40.0%
ACGAGGTGGAAACAAATAGT+GGG - chr3_2:66677277-66677296 Msa0418850:intron 40.0%
TTGTAAGGAAGACATGGCTA+TGG + chr3_2:66677317-66677336 None:intergenic 40.0%
CAAGGAGAGATGAGGTAATT+CGG - chr3_2:66677347-66677366 Msa0418850:intron 40.0%
GAATACTAGAGTAGAGGAAG+AGG - chr3_2:66677369-66677388 Msa0418850:intron 40.0%
CAAGAGAGTCTTCTAATTGG+TGG - chr3_2:66677401-66677420 Msa0418850:CDS 40.0%
GATGAAATGTACAAAGGCGA+TGG + chr3_2:66675692-66675711 None:intergenic 40.0%
TGGTGACCCTAAGAATTGAT+TGG - chr3_2:66675899-66675918 Msa0418850:intron 40.0%
GGTGACCCTAAGAATTGATT+GGG - chr3_2:66675900-66675919 Msa0418850:intron 40.0%
AGAATTGATTGGGACTATGC+AGG - chr3_2:66675910-66675929 Msa0418850:intron 40.0%
CAATGCCCAAACTAAAGCAA+AGG - chr3_2:66675994-66676013 Msa0418850:intron 40.0%
CTTGATCCAATTCATGACCA+CGG - chr3_2:66676028-66676047 Msa0418850:intron 40.0%
TTGATCCAATTCATGACCAC+GGG - chr3_2:66676029-66676048 Msa0418850:intron 40.0%
CTTCACCGCTTCGAAATTAT+TGG + chr3_2:66676132-66676151 None:intergenic 40.0%
CAATAATTTCGAAGCGGTGA+AGG - chr3_2:66676130-66676149 Msa0418850:intron 40.0%
GAGAGGAAATAAACATAGGG+AGG - chr3_2:66676328-66676347 Msa0418850:intron 40.0%
CATATGATGTGGAGATTACG+GGG - chr3_2:66676432-66676451 Msa0418850:intron 40.0%
! GTAGGTGTTGTAAGTCTATG+TGG - chr3_2:66676543-66676562 Msa0418850:CDS 40.0%
CATGTAGCTAACTACTAACG+TGG - chr3_2:66676992-66677011 Msa0418850:CDS 40.0%
GATAGCTGAGAAAGAGAACA+AGG - chr3_2:66677246-66677265 Msa0418850:intron 40.0%
TACGAGGTGGAAACAAATAG+TGG - chr3_2:66677276-66677295 Msa0418850:intron 40.0%
ACGAGGTGGAAACAAATAGT+GGG - chr3_2:66677277-66677296 Msa0418850:intron 40.0%
TTGTAAGGAAGACATGGCTA+TGG + chr3_2:66677317-66677336 None:intergenic 40.0%
CAAGGAGAGATGAGGTAATT+CGG - chr3_2:66677347-66677366 Msa0418850:intron 40.0%
GAATACTAGAGTAGAGGAAG+AGG - chr3_2:66677369-66677388 Msa0418850:intron 40.0%
CAAGAGAGTCTTCTAATTGG+TGG - chr3_2:66677401-66677420 Msa0418850:CDS 40.0%
TGATCCAATTCATGACCACG+GGG - chr3_2:66676030-66676049 Msa0418850:intron 45.0%
TGATGTCAACTTCGAGCCAA+GGG + chr3_2:66676190-66676209 None:intergenic 45.0%
ATGATGTCAACTTCGAGCCA+AGG + chr3_2:66676191-66676210 None:intergenic 45.0%
GTGAAACAGAGGAAGAAGAG+AGG - chr3_2:66676311-66676330 Msa0418850:intron 45.0%
TATAGAAGGTTGCACCAACG+TGG - chr3_2:66676406-66676425 Msa0418850:intron 45.0%
CACATCATATGATGCCACGT+TGG + chr3_2:66676423-66676442 None:intergenic 45.0%
CAACGTGGCATCATATGATG+TGG - chr3_2:66676421-66676440 Msa0418850:intron 45.0%
TCCACATGTCAAGCTTTGCA+GGG - chr3_2:66676473-66676492 Msa0418850:CDS 45.0%
CTCGAGTCTCCTATTACATG+TGG + chr3_2:66676516-66676535 None:intergenic 45.0%
TGTAATAGGAGACTCGAGAG+AGG - chr3_2:66676518-66676537 Msa0418850:CDS 45.0%
GTAATAGGAGACTCGAGAGA+GGG - chr3_2:66676519-66676538 Msa0418850:CDS 45.0%
GAGGAACCTTGCATGTATCT+TGG + chr3_2:66676604-66676623 None:intergenic 45.0%
TGTTTCGCATACCTGCAAAG+AGG + chr3_2:66676623-66676642 None:intergenic 45.0%
GCTGAGAAAGAGAACAAGGA+AGG - chr3_2:66677250-66677269 Msa0418850:intron 45.0%
AGAACAAGGAAGGTGATACG+AGG - chr3_2:66677260-66677279 Msa0418850:intron 45.0%
CGAGGTGGAAACAAATAGTG+GGG - chr3_2:66677278-66677297 Msa0418850:intron 45.0%
GCTAAGAACAAGGAGAGATG+AGG - chr3_2:66677339-66677358 Msa0418850:intron 45.0%
TGATCCAATTCATGACCACG+GGG - chr3_2:66676030-66676049 Msa0418850:intron 45.0%
TGATGTCAACTTCGAGCCAA+GGG + chr3_2:66676190-66676209 None:intergenic 45.0%
ATGATGTCAACTTCGAGCCA+AGG + chr3_2:66676191-66676210 None:intergenic 45.0%
GTGAAACAGAGGAAGAAGAG+AGG - chr3_2:66676311-66676330 Msa0418850:intron 45.0%
TATAGAAGGTTGCACCAACG+TGG - chr3_2:66676406-66676425 Msa0418850:intron 45.0%
CACATCATATGATGCCACGT+TGG + chr3_2:66676423-66676442 None:intergenic 45.0%
CAACGTGGCATCATATGATG+TGG - chr3_2:66676421-66676440 Msa0418850:intron 45.0%
TCCACATGTCAAGCTTTGCA+GGG - chr3_2:66676473-66676492 Msa0418850:CDS 45.0%
CTCGAGTCTCCTATTACATG+TGG + chr3_2:66676516-66676535 None:intergenic 45.0%
TGTAATAGGAGACTCGAGAG+AGG - chr3_2:66676518-66676537 Msa0418850:CDS 45.0%
GTAATAGGAGACTCGAGAGA+GGG - chr3_2:66676519-66676538 Msa0418850:CDS 45.0%
GAGGAACCTTGCATGTATCT+TGG + chr3_2:66676604-66676623 None:intergenic 45.0%
TGTTTCGCATACCTGCAAAG+AGG + chr3_2:66676623-66676642 None:intergenic 45.0%
GCTGAGAAAGAGAACAAGGA+AGG - chr3_2:66677250-66677269 Msa0418850:intron 45.0%
AGAACAAGGAAGGTGATACG+AGG - chr3_2:66677260-66677279 Msa0418850:intron 45.0%
CGAGGTGGAAACAAATAGTG+GGG - chr3_2:66677278-66677297 Msa0418850:intron 45.0%
GCTAAGAACAAGGAGAGATG+AGG - chr3_2:66677339-66677358 Msa0418850:intron 45.0%
TACAAAGGCGATGGCTGCAT+TGG + chr3_2:66675683-66675702 None:intergenic 50.0%
! AGACATGCGAGAGTACGAGA+AGG + chr3_2:66675971-66675990 None:intergenic 50.0%
CATTCCCCGTGGTCATGAAT+TGG + chr3_2:66676037-66676056 None:intergenic 50.0%
ATTCATGACCACGGGGAATG+TGG - chr3_2:66676037-66676056 Msa0418850:intron 50.0%
GAAGCGGTGAAGGAAACAGA+GGG - chr3_2:66676140-66676159 Msa0418850:intron 50.0%
AAGCGGTGAAGGAAACAGAG+GGG - chr3_2:66676141-66676160 Msa0418850:intron 50.0%
! TTGGTGATCGGGTGAAACAG+AGG - chr3_2:66676300-66676319 Msa0418850:intron 50.0%
ATGATGTGGAGATTACGGGG+AGG - chr3_2:66676435-66676454 Msa0418850:intron 50.0%
CTCCACATGTCAAGCTTTGC+AGG - chr3_2:66676472-66676491 Msa0418850:CDS 50.0%
CCACATGTCAAGCTTTGCAG+GGG - chr3_2:66676474-66676493 Msa0418850:CDS 50.0%
CATGCAAGGTTCCTCTTTGC+AGG - chr3_2:66676609-66676628 Msa0418850:CDS 50.0%
ACAAGGAAGGTGATACGAGG+TGG - chr3_2:66677263-66677282 Msa0418850:intron 50.0%
TACAAAGGCGATGGCTGCAT+TGG + chr3_2:66675683-66675702 None:intergenic 50.0%
! AGACATGCGAGAGTACGAGA+AGG + chr3_2:66675971-66675990 None:intergenic 50.0%
CATTCCCCGTGGTCATGAAT+TGG + chr3_2:66676037-66676056 None:intergenic 50.0%
ATTCATGACCACGGGGAATG+TGG - chr3_2:66676037-66676056 Msa0418850:intron 50.0%
GAAGCGGTGAAGGAAACAGA+GGG - chr3_2:66676140-66676159 Msa0418850:intron 50.0%
AAGCGGTGAAGGAAACAGAG+GGG - chr3_2:66676141-66676160 Msa0418850:intron 50.0%
! TTGGTGATCGGGTGAAACAG+AGG - chr3_2:66676300-66676319 Msa0418850:intron 50.0%
ATGATGTGGAGATTACGGGG+AGG - chr3_2:66676435-66676454 Msa0418850:intron 50.0%
CTCCACATGTCAAGCTTTGC+AGG - chr3_2:66676472-66676491 Msa0418850:CDS 50.0%
CCACATGTCAAGCTTTGCAG+GGG - chr3_2:66676474-66676493 Msa0418850:CDS 50.0%
CATGCAAGGTTCCTCTTTGC+AGG - chr3_2:66676609-66676628 Msa0418850:CDS 50.0%
ACAAGGAAGGTGATACGAGG+TGG - chr3_2:66677263-66677282 Msa0418850:intron 50.0%
! AAGGCGATGGCTGCATTGGT+TGG + chr3_2:66675679-66675698 None:intergenic 55.0%
!! TGTGGTGGACGTGTTGCACT+TGG - chr3_2:66676055-66676074 Msa0418850:intron 55.0%
CGAAGCGGTGAAGGAAACAG+AGG - chr3_2:66676139-66676158 Msa0418850:intron 55.0%
CCCCTGCAAAGCTTGACATG+TGG + chr3_2:66676477-66676496 None:intergenic 55.0%
! AAGGCGATGGCTGCATTGGT+TGG + chr3_2:66675679-66675698 None:intergenic 55.0%
!! TGTGGTGGACGTGTTGCACT+TGG - chr3_2:66676055-66676074 Msa0418850:intron 55.0%
CGAAGCGGTGAAGGAAACAG+AGG - chr3_2:66676139-66676158 Msa0418850:intron 55.0%
CCCCTGCAAAGCTTGACATG+TGG + chr3_2:66676477-66676496 None:intergenic 55.0%
TGGGACTATGCAGGTGCACC+AGG - chr3_2:66675919-66675938 Msa0418850:intron 60.0%
GGGACTATGCAGGTGCACCA+GGG - chr3_2:66675920-66675939 Msa0418850:intron 60.0%
ACTATGCAGGTGCACCAGGG+AGG - chr3_2:66675923-66675942 Msa0418850:intron 60.0%
CATGACCACGGGGAATGTGG+TGG - chr3_2:66676040-66676059 Msa0418850:intron 60.0%
CGGTGAAGGAAACAGAGGGG+TGG - chr3_2:66676144-66676163 Msa0418850:intron 60.0%
! GGAGACTCGAGAGAGGGTGT+AGG - chr3_2:66676525-66676544 Msa0418850:CDS 60.0%
TGGGACTATGCAGGTGCACC+AGG - chr3_2:66675919-66675938 Msa0418850:intron 60.0%
GGGACTATGCAGGTGCACCA+GGG - chr3_2:66675920-66675939 Msa0418850:intron 60.0%
ACTATGCAGGTGCACCAGGG+AGG - chr3_2:66675923-66675942 Msa0418850:intron 60.0%
CATGACCACGGGGAATGTGG+TGG - chr3_2:66676040-66676059 Msa0418850:intron 60.0%
CGGTGAAGGAAACAGAGGGG+TGG - chr3_2:66676144-66676163 Msa0418850:intron 60.0%
! GGAGACTCGAGAGAGGGTGT+AGG - chr3_2:66676525-66676544 Msa0418850:CDS 60.0%
CACGTCCACCACATTCCCCG+TGG + chr3_2:66676048-66676067 None:intergenic 65.0%
CACGTCCACCACATTCCCCG+TGG + chr3_2:66676048-66676067 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 66675637 66677456 66675637 ID=Msa0418850;Name=Msa0418850
chr3_2 mRNA 66675637 66677456 66675637 ID=Msa0418850-mRNA-1;Parent=Msa0418850;Name=Msa0418850-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|4|0|307
chr3_2 exon 66677371 66677456 66677371 ID=Msa0418850-mRNA-1:exon:15352;Parent=Msa0418850-mRNA-1
chr3_2 exon 66676858 66677161 66676858 ID=Msa0418850-mRNA-1:exon:15351;Parent=Msa0418850-mRNA-1
chr3_2 exon 66676463 66676773 66676463 ID=Msa0418850-mRNA-1:exon:15350;Parent=Msa0418850-mRNA-1
chr3_2 exon 66675637 66675859 66675637 ID=Msa0418850-mRNA-1:exon:15349;Parent=Msa0418850-mRNA-1
chr3_2 CDS 66677371 66677456 66677371 ID=Msa0418850-mRNA-1:cds;Parent=Msa0418850-mRNA-1
chr3_2 CDS 66676858 66677161 66676858 ID=Msa0418850-mRNA-1:cds;Parent=Msa0418850-mRNA-1
chr3_2 CDS 66676463 66676773 66676463 ID=Msa0418850-mRNA-1:cds;Parent=Msa0418850-mRNA-1
chr3_2 CDS 66675637 66675859 66675637 ID=Msa0418850-mRNA-1:cds;Parent=Msa0418850-mRNA-1
Gene Sequence

>Msa0418850

ATGGTAACGTCCAACGGTAACGTTAAAATATGTGGTGTTCCAACCAATGCAGCCATCGCCTTTGTACATTTCATCTACACTTCCAGGTGCACCAGGGAGGATATGAAAAATTATGGAATACACCTTCTCGTACTCTCGCATGTCTTTGCAATGCCCAAACTAAAGCAAAGGTGCATTGTTGACTTGATCCAATTCATGACCACGGGGAATGTGGTGGACGTGTTGCACTTGGCTAAGCTTTGTGATGCACCAAATCTCTACTTCAAGTGTGTCAAGTTAGTTACCAATAATTTCGAAGCGGTGAAGGAAACAGAGGGGTGGAAATTATTGCATAAACATGACCCTTGGCTCGAAGTTGACATCATCCGTCTCAACAAAGAACAAGAATCGAGGAAGAAGAGAGGAAATAAACATAGGGAGGAACAAAAGTTGTTTGTGCAATTAAGTGAAGCTGTACAATGTTTGGAGCATATATGTATAGAAGGTTGCACCAACGTGGCATCATATGATGTGGAGATTACGGGGAGGCCGTGTACTAAATTCTCCACATGTCAAGCTTTGCAGGGGTTGATCAAACACTTTACCACATGTAATAGGAGACTCGAGAGAGGGTGTAGGTGTTGTAAGTCTATGTGGCAACTACTTAGACTGCACTCCTGCATTTGCTTTAACCAAGATACATGCAAGGTTCCTCTTTGCAGGAAATATCAATTGATAGCTGAGAAAGAGAACAAGGAAGGTGATACGAGGTGGAAACAAATAGTGGGGAAAGTAGCATCAACCATAGCCATGTCTTCCTTACAATTGCTAAGAACAAGGAGAGATGAGGTAATTCGGAATACTAGAGTAGAGGAAGAGGAAGATCAGTCAAGAGAGTCTTCTAATTGGTGGACAAATGCAATTGCACGTTTTCGGTGTATCTAA

Protein sequence

>Msa0418850

MVTSNGNVKICGVPTNAAIAFVHFIYTSRCTREDMKNYGIHLLVLSHVFAMPKLKQRCIVDLIQFMTTGNVVDVLHLAKLCDAPNLYFKCVKLVTNNFEAVKETEGWKLLHKHDPWLEVDIIRLNKEQESRKKRGNKHREEQKLFVQLSEAVQCLEHICIEGCTNVASYDVEITGRPCTKFSTCQALQGLIKHFTTCNRRLERGCRCCKSMWQLLRLHSCICFNQDTCKVPLCRKYQLIAEKENKEGDTRWKQIVGKVASTIAMSSLQLLRTRRDEVIRNTRVEEEEDQSRESSNWWTNAIARFRCI*