AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0419380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0419380 MtrunA17_Chr3g0117091 94.842 349 16 2 1 347 1 349 0.0 653
Msa0419380 MtrunA17_Chr1g0211161 67.224 299 24 6 3 300 4 229 8.50e-128 365
Msa0419380 MtrunA17_Chr4g0058631 54.805 385 112 15 1 347 1 361 1.13e-117 344
Msa0419380 MtrunA17_Chr1g0193371 83.465 127 21 0 1 127 1 127 1.28e-75 237
Msa0419380 MtrunA17_Chr7g0270891 77.941 136 28 1 1 134 1 136 3.92e-75 236
Msa0419380 MtrunA17_Chr1g0193801 70.199 151 42 1 1 148 1 151 6.61e-73 231
Msa0419380 MtrunA17_Chr7g0271241 81.343 134 25 0 1 134 1 134 9.05e-70 223
Msa0419380 MtrunA17_Chr2g0330041 76.000 125 30 0 1 125 1 125 2.33e-66 214
Msa0419380 MtrunA17_Chr8g0342521 51.174 213 98 3 1 208 1 212 3.88e-66 212
Msa0419380 MtrunA17_Chr8g0342541 74.194 124 32 0 1 124 1 124 1.44e-65 211
Msa0419380 MtrunA17_Chr2g0309911 72.222 126 34 1 1 126 1 125 1.32e-64 207
Msa0419380 MtrunA17_Chr3g0131121 66.929 127 42 0 1 127 1 127 1.78e-61 198
Msa0419380 MtrunA17_Chr8g0342481 76.271 118 27 1 1 117 1 118 9.00e-61 200
Msa0419380 MtrunA17_Chr8g0387421 69.748 119 36 0 1 119 1 119 1.42e-59 194
Msa0419380 MtrunA17_Chr5g0435101 64.800 125 44 0 3 127 2 126 1.48e-59 191
Msa0419380 MtrunA17_Chr8g0385321 66.142 127 43 0 1 127 1 127 8.13e-59 192
Msa0419380 MtrunA17_Chr3g0110351 64.662 133 47 0 1 133 1 133 4.85e-58 190
Msa0419380 MtrunA17_Chr4g0037141 47.761 201 95 3 1 191 1 201 6.29e-58 189
Msa0419380 MtrunA17_Chr4g0039971 41.494 241 135 3 1 241 2 236 7.71e-58 191
Msa0419380 MtrunA17_Chr4g0032401 79.245 106 22 0 11 116 16 121 2.65e-57 189
Msa0419380 MtrunA17_Chr5g0397231 71.818 110 31 0 1 110 1 110 6.48e-57 188
Msa0419380 MtrunA17_Chr5g0434571 66.142 127 43 0 1 127 37 163 7.59e-57 188
Msa0419380 MtrunA17_Chr5g0395281 65.600 125 43 0 12 136 12 136 9.62e-57 186
Msa0419380 MtrunA17_Chr4g0057031 63.780 127 46 0 1 127 1 127 9.81e-57 185
Msa0419380 MtrunA17_Chr7g0217741 51.955 179 72 1 1 179 1 165 1.06e-56 186
Msa0419380 MtrunA17_Chr2g0328771 78.095 105 23 0 12 116 20 124 1.14e-56 187
Msa0419380 MtrunA17_Chr3g0088461 77.778 108 24 0 9 116 19 126 1.34e-56 187
Msa0419380 MtrunA17_Chr4g0042671 66.929 127 42 0 1 127 1 127 1.37e-56 189
Msa0419380 MtrunA17_Chr3g0115821 62.992 127 47 0 1 127 1 127 1.97e-56 187
Msa0419380 MtrunA17_Chr6g0452271 46.429 196 96 2 1 195 1 188 1.98e-56 187
Msa0419380 MtrunA17_Chr8g0349261 49.756 205 86 4 1 201 1 192 6.10e-56 184
Msa0419380 MtrunA17_Chr5g0410961 62.992 127 47 0 1 127 1 127 6.92e-56 186
Msa0419380 MtrunA17_Chr6g0453471 65.354 127 44 0 1 127 1 127 1.33e-55 185
Msa0419380 MtrunA17_Chr6g0470971 43.802 242 107 6 9 232 11 241 1.73e-55 182
Msa0419380 MtrunA17_Chr2g0323411 63.492 126 46 0 1 126 1 126 7.79e-55 182
Msa0419380 MtrunA17_Chr7g0228891 64.567 127 45 0 1 127 1 127 8.06e-55 181
Msa0419380 MtrunA17_Chr2g0281071 62.205 127 47 1 1 126 1 127 2.36e-54 181
Msa0419380 MtrunA17_Chr3g0103281 62.791 129 48 0 1 129 1 129 5.41e-54 180
Msa0419380 MtrunA17_Chr1g0203441 69.421 121 36 1 9 129 10 129 7.73e-54 178
Msa0419380 MtrunA17_Chr4g0048511 61.417 127 48 1 1 126 1 127 1.69e-53 179
Msa0419380 MtrunA17_Chr4g0044421 61.111 126 49 0 1 126 1 126 2.95e-53 174
Msa0419380 MtrunA17_Chr7g0274581 61.157 121 47 0 1 121 1 121 1.12e-51 170
Msa0419380 MtrunA17_Chr1g0203411 63.559 118 43 0 1 118 1 118 1.41e-51 173
Msa0419380 MtrunA17_Chr2g0323351 64.035 114 40 1 5 118 6 118 3.94e-51 170
Msa0419380 MtrunA17_Chr3g0121241 62.295 122 46 0 6 127 36 157 4.70e-51 172
Msa0419380 MtrunA17_Chr4g0070611 35.354 297 162 6 1 284 1 280 1.31e-50 171
Msa0419380 MtrunA17_Chr7g0261281 63.793 116 42 0 1 116 1 116 3.16e-50 169
Msa0419380 MtrunA17_Chr4g0070641 48.295 176 80 3 1 173 1 168 3.71e-50 165
Msa0419380 MtrunA17_Chr4g0022931 61.261 111 43 0 6 116 7 117 1.07e-49 167
Msa0419380 MtrunA17_Chr1g0187761 66.379 116 39 0 1 116 1 116 2.30e-49 166
Msa0419380 MtrunA17_Chr4g0022901 60.714 112 44 0 6 117 7 118 7.02e-49 165
Msa0419380 MtrunA17_Chr1g0152011 38.628 277 136 8 1 258 1 262 1.01e-48 167
Msa0419380 MtrunA17_Chr1g0167691 61.538 117 45 0 1 117 1 117 1.99e-47 160
Msa0419380 MtrunA17_Chr4g0022911 58.929 112 46 0 6 117 7 118 6.98e-47 160
Msa0419380 MtrunA17_Chr1g0167661 62.393 117 44 0 1 117 1 117 1.02e-46 159
Msa0419380 MtrunA17_Chr5g0417821 61.207 116 45 0 12 127 7 122 1.53e-46 159
Msa0419380 MtrunA17_Chr1g0151941 55.085 118 52 1 1 117 1 118 2.15e-46 158
Msa0419380 MtrunA17_Chr4g0068061 62.069 116 44 0 1 116 1 116 2.68e-46 160
Msa0419380 MtrunA17_Chr8g0346561 60.169 118 47 0 1 118 1 118 2.86e-46 159
Msa0419380 MtrunA17_Chr7g0275911 59.664 119 48 0 1 119 1 119 6.14e-46 157
Msa0419380 MtrunA17_Chr1g0194951 63.793 116 42 0 1 116 1 116 7.81e-46 160
Msa0419380 MtrunA17_Chr5g0400821 50.327 153 72 3 1 151 1 151 1.21e-45 158
Msa0419380 MtrunA17_Chr7g0217221 45.989 187 91 2 1 187 1 177 1.31e-45 156
Msa0419380 MtrunA17_Chr4g0028311 60.169 118 46 1 1 117 1 118 3.16e-45 157
Msa0419380 MtrunA17_Chr8g0342511 77.011 87 20 0 1 87 1 87 5.65e-45 149
Msa0419380 MtrunA17_Chr2g0311221 61.468 109 42 0 2 110 4 112 1.05e-44 156
Msa0419380 MtrunA17_Chr3g0135311 56.780 118 50 1 1 117 1 118 8.02e-44 154
Msa0419380 MtrunA17_Chr8g0342531 72.527 91 25 0 1 91 1 91 8.25e-44 148
Msa0419380 MtrunA17_Chr8g0343831 46.154 169 83 4 10 174 6 170 2.41e-43 150
Msa0419380 MtrunA17_Chr4g0060721 51.825 137 60 1 1 131 2 138 3.44e-43 152
Msa0419380 MtrunA17_Chr7g0264641 55.932 118 51 1 1 117 1 118 9.18e-43 149
Msa0419380 MtrunA17_Chr7g0254411 56.349 126 53 1 1 124 1 126 1.08e-42 151
Msa0419380 MtrunA17_Chr4g0055981 60.748 107 42 0 9 115 52 158 4.04e-42 146
Msa0419380 MtrunA17_Chr2g0327351 59.459 111 44 1 1 110 1 111 5.08e-42 149
Msa0419380 MtrunA17_Chr3g0092401 58.475 118 49 0 1 118 2 119 6.59e-42 148
Msa0419380 MtrunA17_Chr1g0186061 60.000 105 42 0 11 115 19 123 1.76e-41 145
Msa0419380 MtrunA17_Chr4g0054391 59.091 110 44 1 1 109 1 110 3.28e-41 145
Msa0419380 MtrunA17_Chr7g0247131 72.941 85 23 0 43 127 9 93 5.38e-41 144
Msa0419380 MtrunA17_Chr1g0168661 61.165 103 40 0 13 115 22 124 5.73e-41 144
Msa0419380 MtrunA17_Chr8g0342471 72.222 90 24 1 1 89 1 90 6.19e-41 140
Msa0419380 MtrunA17_Chr8g0342461 71.111 90 25 1 1 89 1 90 1.45e-40 139
Msa0419380 MtrunA17_Chr3g0099131 53.719 121 55 1 12 132 41 160 3.62e-40 148
Msa0419380 MtrunA17_Chr6g0453211 59.091 110 45 0 1 110 1 110 3.88e-40 144
Msa0419380 MtrunA17_Chr7g0228231 55.085 118 51 1 1 116 1 118 3.92e-40 140
Msa0419380 MtrunA17_Chr1g0180391 49.242 132 61 1 12 143 19 144 4.50e-40 141
Msa0419380 MtrunA17_Chr1g0154031 59.615 104 42 0 12 115 76 179 5.23e-40 145
Msa0419380 MtrunA17_Chr7g0269831 62.069 116 44 0 1 116 1 116 6.16e-40 144
Msa0419380 MtrunA17_Chr4g0022881 56.604 106 46 0 9 114 9 114 1.17e-39 140
Msa0419380 MtrunA17_Chr4g0072751 55.856 111 48 1 1 110 1 111 1.18e-39 143
Msa0419380 MtrunA17_Chr6g0450101 54.237 118 52 1 1 116 1 118 1.22e-39 139
Msa0419380 MtrunA17_Chr4g0022891 58.095 105 44 0 9 113 9 113 1.31e-39 140
Msa0419380 MtrunA17_Chr6g0487491 48.611 144 65 2 1 135 1 144 4.23e-39 139
Msa0419380 MtrunA17_Chr1g0209661 50.400 125 61 1 9 133 24 147 5.22e-39 140
Msa0419380 MtrunA17_Chr8g0354661 58.654 104 43 0 12 115 37 140 5.37e-39 145
Msa0419380 MtrunA17_Chr1g0194301 53.153 111 52 0 12 122 33 143 6.09e-39 139
Msa0419380 MtrunA17_Chr2g0327821 47.244 127 65 1 8 132 2 128 1.33e-38 137
Msa0419380 MtrunA17_Chr3g0080861 57.692 104 44 0 12 115 37 140 2.16e-38 143
Msa0419380 MtrunA17_Chr1g0194291 57.692 104 44 0 12 115 21 124 5.75e-38 136
Msa0419380 MtrunA17_Chr7g0240821 58.000 100 42 0 17 116 6 105 2.53e-37 134
Msa0419380 MtrunA17_Chr5g0434831 56.604 106 46 0 12 117 7 112 2.79e-37 132
Msa0419380 MtrunA17_Chr5g0434931 50.000 114 57 0 8 121 31 144 1.33e-36 133
Msa0419380 MtrunA17_Chr4g0042611 63.636 88 32 0 1 88 1 88 3.03e-36 126
Msa0419380 MtrunA17_Chr2g0322521 59.615 104 42 0 12 115 29 132 3.94e-36 135
Msa0419380 MtrunA17_Chr4g0030881 50.877 114 49 1 13 119 8 121 4.65e-36 131
Msa0419380 MtrunA17_Chr8g0360111 56.436 101 44 0 12 112 25 125 1.10e-35 130
Msa0419380 MtrunA17_Chr5g0434911 51.818 110 53 0 10 119 19 128 1.99e-35 130
Msa0419380 MtrunA17_Chr7g0220341 46.763 139 55 2 12 148 25 146 7.66e-35 128
Msa0419380 MtrunA17_Chr1g0192411 45.985 137 68 1 11 141 11 147 9.93e-35 131
Msa0419380 MtrunA17_Chr5g0434841 51.818 110 53 0 10 119 18 127 1.29e-34 129
Msa0419380 MtrunA17_Chr7g0228991 50.000 112 56 0 8 119 25 136 2.32e-34 127
Msa0419380 MtrunA17_Chr2g0323321 64.198 81 29 0 12 92 11 91 9.08e-34 120
Msa0419380 MtrunA17_Chr4g0068921 50.400 125 61 1 12 136 24 147 2.34e-33 122
Msa0419380 MtrunA17_Chr5g0440781 50.893 112 53 2 13 123 13 123 3.83e-33 121
Msa0419380 MtrunA17_Chr8g0334881 52.336 107 50 1 9 114 7 113 7.01e-33 124
Msa0419380 MtrunA17_Chr5g0441141 50.893 112 53 2 13 123 13 123 1.69e-32 122
Msa0419380 MtrunA17_Chr5g0440761 50.893 112 53 2 13 123 13 123 1.82e-32 122
Msa0419380 MtrunA17_Chr2g0293911 55.340 103 46 0 12 114 24 126 1.99e-32 123
Msa0419380 MtrunA17_Chr5g0441131 50.000 112 54 2 13 123 10 120 4.57e-31 116
Msa0419380 MtrunA17_Chr5g0395221 62.500 80 30 0 9 88 9 88 1.47e-30 111
Msa0419380 MtrunA17_Chr3g0093811 59.770 87 35 0 43 129 13 99 2.60e-30 116
Msa0419380 MtrunA17_Chr4g0013361 51.923 104 49 1 12 114 10 113 3.43e-30 116
Msa0419380 MtrunA17_Chr2g0294811 59.091 88 36 0 1 88 1 88 2.61e-29 109
Msa0419380 MtrunA17_Chr4g0008551 45.865 133 68 3 14 145 38 167 9.98e-29 114
Msa0419380 MtrunA17_Chr3g0099141 55.422 83 37 0 12 94 40 122 2.55e-28 107
Msa0419380 MtrunA17_Chr5g0401731 50.909 110 51 2 14 122 15 122 1.06e-27 110
Msa0419380 MtrunA17_Chr5g0429661 45.714 105 54 2 12 115 120 222 1.13e-27 111
Msa0419380 MtrunA17_Chr4g0053431 51.961 102 48 1 14 115 5 105 1.46e-27 108
Msa0419380 MtrunA17_Chr7g0238631 50.909 110 51 2 8 116 107 214 1.53e-27 113
Msa0419380 MtrunA17_Chr4g0058991 42.857 112 61 2 9 119 204 313 2.21e-26 108
Msa0419380 MtrunA17_Chr6g0454921 50.485 103 48 2 14 115 15 115 2.28e-26 104
Msa0419380 MtrunA17_Chr7g0229131 42.424 132 73 2 43 174 3 131 5.00e-26 102
Msa0419380 MtrunA17_Chr7g0229101 61.972 71 27 0 43 113 3 73 7.07e-26 102
Msa0419380 MtrunA17_Chr3g0117511 42.609 115 61 3 8 119 175 287 1.15e-25 107
Msa0419380 MtrunA17_Chr3g0139671 47.273 110 55 2 8 116 79 186 1.52e-25 107
Msa0419380 MtrunA17_Chr3g0133601 50.485 103 48 2 14 115 37 137 2.51e-25 102
Msa0419380 MtrunA17_Chr5g0434901 57.746 71 30 0 43 113 4 74 5.38e-25 97.8
Msa0419380 MtrunA17_Chr6g0480581 47.423 97 48 2 14 109 4 98 1.84e-24 100
Msa0419380 MtrunA17_Chr1g0157731 45.455 110 57 2 8 116 85 192 5.31e-24 103
Msa0419380 MtrunA17_Chr6g0453751 52.688 93 35 2 12 95 20 112 5.73e-24 95.5
Msa0419380 MtrunA17_Chr5g0417621 42.727 110 60 2 11 119 131 238 7.32e-24 101
Msa0419380 MtrunA17_Chr4g0042501 43.925 107 57 2 14 119 105 209 8.52e-24 101
Msa0419380 MtrunA17_Chr7g0228531 37.063 143 79 4 14 147 220 360 1.44e-22 97.8
Msa0419380 MtrunA17_Chr6g0460661 44.330 97 51 2 14 109 16 110 2.90e-22 92.0
Msa0419380 MtrunA17_Chr3g0125801 44.860 107 56 2 14 119 16 120 6.27e-22 94.4
Msa0419380 MtrunA17_Chr5g0437321 48.000 100 49 2 14 112 19 116 7.04e-22 94.0
Msa0419380 MtrunA17_Chr5g0425591 47.619 84 43 1 13 95 10 93 1.79e-21 87.4
Msa0419380 MtrunA17_Chr7g0228401 46.667 90 45 2 25 113 290 377 2.84e-21 94.7
Msa0419380 MtrunA17_Chr1g0177901 46.667 90 44 2 24 113 7 92 1.49e-20 88.6
Msa0419380 MtrunA17_Chr7g0238651 32.432 148 89 3 17 153 10 157 6.67e-20 89.4
Msa0419380 MtrunA17_Chr6g0460671 40.777 103 58 2 14 115 99 199 7.83e-20 89.4
Msa0419380 MtrunA17_Chr5g0397841 43.000 100 54 2 12 110 108 205 2.19e-19 89.0
Msa0419380 MtrunA17_Chr7g0254261 41.121 107 60 2 14 119 89 193 1.51e-18 85.5
Msa0419380 MtrunA17_Chr7g0228481 38.182 110 63 3 14 120 220 327 2.00e-18 85.9
Msa0419380 MtrunA17_Chr7g0233061 36.522 115 49 3 14 116 180 282 1.53e-17 82.8
Msa0419380 MtrunA17_Chr5g0395231 59.649 57 23 0 78 134 5 61 1.51e-15 75.5
Msa0419380 MtrunA17_Chr1g0193901 47.191 89 45 2 10 96 9 97 5.13e-15 70.5
Msa0419380 MtrunA17_Chr1g0193891 47.191 89 45 2 10 96 9 97 5.13e-15 70.5
Msa0419380 MtrunA17_Chr1g0193871 47.191 89 45 2 10 96 9 97 5.13e-15 70.5
Msa0419380 MtrunA17_Chr1g0193881 47.191 89 45 2 10 96 9 97 5.13e-15 70.5
Msa0419380 MtrunA17_Chr5g0416341 35.354 99 63 1 17 115 29 126 2.10e-14 73.9
Msa0419380 MtrunA17_Chr8g0362231 33.884 121 78 2 2 122 10 128 1.19e-13 71.6
Msa0419380 MtrunA17_Chr5g0434871 59.091 44 18 0 74 117 2 45 1.41e-13 65.1
Msa0419380 MtrunA17_Chr4g0042621 71.795 39 11 0 89 127 15 53 1.52e-12 67.8
Msa0419380 MtrunA17_Chr3g0145551 71.429 35 10 0 92 126 2 36 2.73e-12 62.0
Msa0419380 MtrunA17_Chr2g0322831 61.538 39 15 0 70 108 34 72 9.83e-12 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0419380 AT5G26660.1 81.818 132 24 0 1 132 1 132 6.04e-77 240
Msa0419380 AT4G01680.3 75.000 144 34 2 1 144 1 142 2.20e-74 230
Msa0419380 AT1G57560.1 80.315 127 25 0 1 127 1 127 1.05e-73 231
Msa0419380 AT1G57560.2 80.315 127 25 0 1 127 1 127 1.18e-73 229
Msa0419380 AT4G01680.1 75.000 144 34 2 1 144 1 142 2.41e-73 231
Msa0419380 AT1G09540.1 73.103 145 36 2 1 145 1 142 1.66e-72 229
Msa0419380 AT4G01680.2 69.231 156 34 3 1 144 1 154 1.21e-69 221
Msa0419380 AT3G13890.2 79.487 117 24 0 1 117 1 117 1.01e-64 209
Msa0419380 AT3G12720.1 71.429 126 35 1 1 126 12 136 4.54e-64 206
Msa0419380 AT3G13890.1 73.810 126 24 1 1 117 1 126 1.24e-61 201
Msa0419380 AT1G63910.1 71.186 118 34 0 1 118 1 118 3.26e-59 195
Msa0419380 AT4G34990.1 65.354 127 44 0 1 127 1 127 1.12e-58 191
Msa0419380 AT2G16720.1 64.567 127 45 0 1 127 1 127 2.09e-58 190
Msa0419380 AT3G01140.2 59.589 146 59 0 1 146 1 146 3.99e-58 192
Msa0419380 AT1G66230.1 60.417 144 52 1 1 144 1 139 9.45e-58 189
Msa0419380 AT5G65230.1 63.158 133 49 0 1 133 1 133 2.35e-57 189
Msa0419380 AT4G05100.1 63.780 127 45 1 1 126 1 127 4.38e-57 188
Msa0419380 AT5G10280.1 64.567 127 45 0 1 127 1 127 5.92e-57 188
Msa0419380 AT3G02940.2 62.205 127 48 0 1 127 1 127 6.86e-57 187
Msa0419380 AT4G12350.1 64.567 127 45 0 1 127 1 127 7.24e-57 186
Msa0419380 AT3G02940.1 62.205 127 48 0 1 127 1 127 1.29e-56 187
Msa0419380 AT3G02940.3 62.205 127 48 0 1 127 1 127 1.29e-56 187
Msa0419380 AT4G21440.1 61.194 134 52 0 1 134 1 134 1.53e-56 187
Msa0419380 AT4G22680.1 60.000 145 57 1 1 145 1 144 1.57e-56 185
Msa0419380 AT3G61250.1 65.354 127 44 0 1 127 1 127 1.73e-56 186
Msa0419380 AT4G38620.1 54.967 151 64 1 1 151 1 147 1.73e-56 186
Msa0419380 AT1G22640.1 61.417 127 49 0 1 127 1 127 2.20e-56 184
Msa0419380 AT5G15310.4 65.354 127 44 0 1 127 1 127 3.37e-56 184
Msa0419380 AT4G09460.1 61.240 129 50 0 1 129 1 129 3.92e-56 183
Msa0419380 AT5G16600.1 66.142 127 43 0 1 127 1 127 5.38e-56 186
Msa0419380 AT5G12870.1 76.147 109 26 0 10 118 16 124 6.45e-56 184
Msa0419380 AT5G15310.1 65.354 127 44 0 1 127 1 127 6.48e-56 185
Msa0419380 AT5G15310.2 65.354 127 44 0 1 127 1 127 7.70e-56 185
Msa0419380 AT5G16770.4 58.088 136 57 0 1 136 1 136 1.41e-55 184
Msa0419380 AT5G16770.3 58.088 136 57 0 1 136 1 136 1.41e-55 184
Msa0419380 AT4G28110.1 61.111 126 49 0 1 126 1 126 1.56e-55 183
Msa0419380 AT3G01140.1 66.667 123 41 0 6 128 49 171 1.65e-55 186
Msa0419380 AT5G16770.1 58.088 136 57 0 1 136 1 136 2.44e-55 184
Msa0419380 AT5G16770.2 58.088 136 57 0 1 136 1 136 2.44e-55 184
Msa0419380 AT5G54230.1 62.595 131 49 0 1 131 1 131 3.71e-55 183
Msa0419380 AT1G34670.1 62.992 127 47 0 1 127 1 127 4.99e-55 184
Msa0419380 AT5G56110.1 62.791 129 48 0 1 129 1 129 7.32e-55 182
Msa0419380 AT4G17785.2 57.971 138 57 1 1 137 1 138 1.46e-54 182
Msa0419380 AT4G17785.1 57.971 138 57 1 1 137 1 138 1.65e-54 182
Msa0419380 AT3G08500.1 75.926 108 26 0 9 116 27 134 1.87e-54 182
Msa0419380 AT5G14340.1 44.762 210 107 2 1 210 13 213 4.25e-54 179
Msa0419380 AT1G35515.1 59.231 130 53 0 1 130 1 130 8.32e-54 176
Msa0419380 AT5G61420.2 54.167 144 66 0 1 144 1 144 1.10e-53 181
Msa0419380 AT5G62320.1 57.778 135 50 1 2 129 3 137 1.90e-53 176
Msa0419380 AT2G31180.1 57.447 141 59 1 1 141 1 140 7.35e-53 175
Msa0419380 AT5G60890.1 59.055 127 52 0 1 127 1 127 8.17e-53 176
Msa0419380 AT1G74430.1 63.780 127 46 0 1 127 1 127 2.96e-52 174
Msa0419380 AT1G18570.1 58.140 129 54 0 6 134 7 135 3.05e-52 176
Msa0419380 AT3G13540.1 60.465 129 50 1 6 133 17 145 6.62e-52 172
Msa0419380 AT3G28470.1 64.567 127 45 0 1 127 1 127 8.15e-52 174
Msa0419380 AT1G74080.1 58.015 131 55 0 1 131 1 131 1.25e-51 174
Msa0419380 AT5G07690.1 59.055 127 52 0 1 127 1 127 1.58e-51 174
Msa0419380 AT1G06180.1 66.379 116 39 0 1 116 1 116 8.82e-51 169
Msa0419380 AT5G07700.1 58.400 125 51 1 3 127 4 127 3.48e-50 171
Msa0419380 AT5G07700.2 58.400 125 51 1 3 127 4 127 3.48e-50 171
Msa0419380 AT3G23250.1 62.069 116 44 0 1 116 1 116 1.28e-48 165
Msa0419380 AT1G56160.1 64.348 115 41 0 2 116 4 118 1.29e-48 166
Msa0419380 AT1G18710.1 56.391 133 58 0 1 133 1 133 1.53e-48 164
Msa0419380 AT3G48920.1 61.983 121 43 2 9 128 15 133 3.32e-48 163
Msa0419380 AT1G79180.1 62.393 117 44 0 2 118 4 120 4.07e-48 164
Msa0419380 AT4G25560.1 66.055 109 37 0 10 118 8 116 8.34e-48 163
Msa0419380 AT5G52260.1 67.273 110 36 0 9 118 9 118 5.78e-47 160
Msa0419380 AT1G16490.1 39.744 234 123 6 2 230 4 224 1.56e-46 159
Msa0419380 AT5G26660.2 80.682 88 17 0 45 132 14 101 1.81e-46 160
Msa0419380 AT3G12820.1 61.538 117 45 0 3 119 5 121 2.66e-46 157
Msa0419380 AT2G47460.1 62.069 116 44 0 1 116 1 116 5.73e-46 160
Msa0419380 AT3G62610.1 61.207 116 45 0 1 116 1 116 8.89e-46 159
Msa0419380 AT5G49330.1 55.224 134 59 1 1 133 1 134 1.67e-45 159
Msa0419380 AT5G65790.1 58.333 120 49 1 1 119 1 120 2.70e-45 159
Msa0419380 AT5G35550.1 48.023 177 87 3 9 180 11 187 2.89e-45 155
Msa0419380 AT5G57620.1 58.475 118 48 1 1 117 1 118 2.94e-45 158
Msa0419380 AT5G23000.1 59.322 118 47 1 1 117 1 118 4.53e-45 157
Msa0419380 AT3G49690.1 58.333 120 49 1 1 119 1 120 1.11e-44 155
Msa0419380 AT5G14750.1 60.577 104 41 0 13 116 17 120 4.96e-44 150
Msa0419380 AT3G47600.1 59.322 118 48 0 1 118 1 118 1.37e-43 153
Msa0419380 AT1G74650.1 59.829 117 47 0 1 117 1 117 2.61e-43 152
Msa0419380 AT5G62470.2 59.322 118 48 0 1 118 1 118 4.61e-43 152
Msa0419380 AT1G08810.1 58.197 122 51 0 1 122 1 122 5.24e-43 150
Msa0419380 AT3G01530.1 55.556 117 52 0 12 128 25 141 8.03e-43 147
Msa0419380 AT5G40330.1 59.615 104 42 0 13 116 13 116 8.56e-43 148
Msa0419380 AT2G36890.1 52.308 130 60 2 1 129 1 129 9.60e-43 150
Msa0419380 AT2G36890.2 52.308 130 60 2 1 129 42 170 1.42e-42 151
Msa0419380 AT3G27920.1 56.481 108 47 0 10 117 12 119 1.57e-42 147
Msa0419380 AT4G37780.1 56.557 122 51 2 1 120 1 122 6.78e-42 148
Msa0419380 AT5G62470.1 59.322 118 47 1 1 118 1 117 2.72e-41 148
Msa0419380 AT1G79180.2 48.667 150 44 1 2 118 4 153 3.79e-41 147
Msa0419380 AT5G55020.1 60.909 110 42 1 12 121 26 134 4.43e-41 150
Msa0419380 AT5G40350.1 56.364 110 48 0 11 120 16 125 4.70e-41 143
Msa0419380 AT5G52600.1 57.944 107 45 0 9 115 9 115 5.24e-41 143
Msa0419380 AT3G28910.1 56.557 122 53 0 1 122 1 122 7.84e-41 146
Msa0419380 AT3G24310.1 58.333 108 45 0 8 115 14 121 9.98e-41 144
Msa0419380 AT4G26930.1 59.091 110 44 1 12 121 19 127 1.17e-40 147
Msa0419380 AT4G13480.1 59.259 108 44 0 8 115 2 109 2.12e-40 143
Msa0419380 AT3G27810.1 54.054 111 51 0 11 121 19 129 6.63e-40 140
Msa0419380 AT1G48000.1 45.732 164 71 4 11 172 31 178 6.81e-40 141
Msa0419380 AT5G06100.1 58.654 104 43 0 12 115 32 135 1.36e-39 145
Msa0419380 AT5G06100.5 58.654 104 43 0 12 115 32 135 5.07e-39 145
Msa0419380 AT5G06100.2 58.654 104 43 0 12 115 32 135 5.07e-39 145
Msa0419380 AT5G06100.3 58.654 104 43 0 12 115 32 135 5.07e-39 145
Msa0419380 AT5G06100.4 58.654 104 43 0 12 115 32 135 5.07e-39 145
Msa0419380 AT2G26960.1 48.227 141 60 2 7 136 15 153 5.12e-39 143
Msa0419380 AT1G68320.1 52.500 120 57 0 10 129 17 136 8.03e-39 139
Msa0419380 AT2G32460.2 50.794 126 51 1 8 122 2 127 1.28e-38 143
Msa0419380 AT2G32460.1 51.613 124 49 1 10 122 16 139 1.33e-38 144
Msa0419380 AT3G30210.1 60.784 102 40 0 13 114 28 129 1.59e-38 139
Msa0419380 AT3G11440.2 55.769 104 46 0 12 115 41 144 2.26e-38 142
Msa0419380 AT1G25340.1 51.613 124 59 1 13 136 19 141 7.78e-38 137
Msa0419380 AT3G11440.3 55.769 104 46 0 12 115 41 144 1.07e-37 142
Msa0419380 AT3G11440.4 55.769 104 46 0 12 115 41 144 1.07e-37 142
Msa0419380 AT3G11440.1 55.769 104 46 0 12 115 41 144 1.07e-37 142
Msa0419380 AT5G59780.3 51.786 112 54 0 8 119 4 115 1.35e-37 135
Msa0419380 AT3G46130.1 53.271 107 50 0 13 119 10 116 7.88e-37 134
Msa0419380 AT1G66370.1 55.769 104 46 0 12 115 8 111 1.36e-35 130
Msa0419380 AT3G53200.1 52.252 111 53 0 9 119 6 116 1.56e-35 129
Msa0419380 AT2G47190.1 50.962 104 51 0 12 115 20 123 4.90e-35 129
Msa0419380 AT3G06490.1 58.252 103 43 0 12 114 19 121 3.05e-34 128
Msa0419380 AT1G66380.1 58.654 104 43 0 12 115 8 111 1.02e-33 122
Msa0419380 AT2G26950.1 45.299 117 63 1 5 121 9 124 2.29e-33 127
Msa0419380 AT3G12820.2 72.222 72 20 0 48 119 2 73 3.20e-33 122
Msa0419380 AT3G60460.1 51.327 113 54 1 3 114 2 114 4.04e-33 125
Msa0419380 AT5G35550.2 48.951 143 68 3 43 180 48 190 4.41e-33 124
Msa0419380 AT1G25340.2 49.194 124 57 2 13 136 19 136 5.09e-33 124
Msa0419380 AT1G25340.3 49.194 124 57 2 13 136 19 136 9.29e-33 124
Msa0419380 AT1G56650.1 57.692 104 44 0 12 115 8 111 2.16e-32 121
Msa0419380 AT5G49620.1 55.340 103 46 0 12 114 26 128 3.99e-32 122
Msa0419380 AT1G66390.1 56.604 106 46 0 10 115 6 111 7.25e-32 120
Msa0419380 AT5G14750.3 69.565 69 21 0 48 116 18 86 3.67e-31 116
Msa0419380 AT5G40350.2 59.211 76 31 0 45 120 5 80 4.21e-29 110
Msa0419380 AT3G47600.2 54.737 95 39 1 24 118 22 112 1.03e-28 114
Msa0419380 AT5G49620.2 48.718 117 46 1 12 114 26 142 1.62e-28 113
Msa0419380 AT3G27810.2 55.844 77 34 0 45 121 4 80 3.34e-28 108
Msa0419380 AT1G22640.3 62.857 70 26 0 58 127 1 70 4.63e-28 108
Msa0419380 AT3G46130.3 59.211 76 31 0 44 119 9 84 7.26e-28 108
Msa0419380 AT3G27785.1 43.966 116 60 3 3 115 176 289 7.38e-28 113
Msa0419380 AT1G18960.1 45.600 125 60 4 6 129 5 122 1.83e-27 110
Msa0419380 AT3G46130.4 60.000 75 30 0 45 119 20 94 2.16e-27 108
Msa0419380 AT5G59780.2 60.000 75 30 0 45 119 20 94 2.22e-27 107
Msa0419380 AT1G71030.2 56.471 85 35 1 51 133 5 89 3.36e-27 105
Msa0419380 AT1G71030.1 56.471 85 35 1 51 133 19 103 5.18e-27 105
Msa0419380 AT5G02320.3 34.286 245 131 9 8 233 61 294 5.40e-27 111
Msa0419380 AT5G02320.1 34.286 245 131 9 8 233 121 354 5.69e-27 112
Msa0419380 AT5G02320.2 34.286 245 131 9 8 233 121 354 5.69e-27 112
Msa0419380 AT3G09370.2 49.541 109 52 2 8 115 129 235 7.33e-27 111
Msa0419380 AT3G09370.1 49.541 109 52 2 8 115 124 230 7.38e-27 111
Msa0419380 AT4G18770.1 43.750 112 60 2 9 119 212 321 1.03e-26 110
Msa0419380 AT3G09370.3 49.541 109 52 2 8 115 137 243 1.30e-26 110
Msa0419380 AT3G53200.2 60.000 75 30 0 45 119 9 83 4.63e-26 103
Msa0419380 AT5G67300.1 49.515 103 49 2 14 115 6 106 6.17e-26 105
Msa0419380 AT2G39880.1 50.467 107 50 2 14 119 50 154 6.26e-26 107
Msa0419380 AT4G37260.1 49.074 108 52 2 14 120 13 118 4.60e-25 103
Msa0419380 AT5G58850.1 43.243 111 60 2 10 119 101 209 4.73e-25 105
Msa0419380 AT1G66380.3 59.740 77 31 0 39 115 2 78 9.66e-25 97.1
Msa0419380 AT3G50060.1 48.544 103 50 2 14 115 6 106 1.04e-24 102
Msa0419380 AT5G40360.1 40.566 106 62 1 9 114 153 257 1.08e-24 103
Msa0419380 AT2G23290.1 51.456 103 47 2 14 115 13 113 1.64e-24 102
Msa0419380 AT5G11510.3 46.364 110 56 2 8 116 75 182 1.93e-24 105
Msa0419380 AT5G11510.1 46.364 110 56 2 8 116 75 182 1.93e-24 105
Msa0419380 AT5G11510.4 46.364 110 56 2 8 116 75 182 1.93e-24 105
Msa0419380 AT1G69560.1 42.105 114 63 2 7 119 100 211 2.08e-24 102
Msa0419380 AT5G11510.2 46.364 110 56 2 8 116 75 182 2.38e-24 104
Msa0419380 AT3G09230.1 48.571 105 51 2 14 117 55 157 2.53e-24 102
Msa0419380 AT5G11510.5 46.364 110 56 2 8 116 75 182 2.57e-24 104
Msa0419380 AT1G69560.2 42.105 114 63 2 7 119 116 227 2.88e-24 102
Msa0419380 AT5G11050.1 39.516 124 72 2 14 136 105 226 3.73e-24 102
Msa0419380 AT3G55730.1 51.456 103 47 2 14 115 56 156 3.73e-24 102
Msa0419380 AT3G23250.2 69.492 59 18 0 58 116 1 59 8.54e-24 98.2
Msa0419380 AT1G17950.1 34.286 175 95 6 14 186 5 161 1.13e-23 98.6
Msa0419380 AT1G26780.1 43.810 105 56 2 12 115 96 198 2.03e-23 98.6
Msa0419380 AT4G32730.1 44.545 110 58 2 8 116 81 188 3.71e-23 101
Msa0419380 AT4G32730.5 44.545 110 58 2 8 116 81 188 3.82e-23 101
Msa0419380 AT4G32730.4 44.545 110 58 2 8 116 81 188 3.82e-23 101
Msa0419380 AT4G32730.3 44.545 110 58 2 8 116 81 188 3.82e-23 101
Msa0419380 AT4G32730.2 44.545 110 58 2 8 116 81 188 3.82e-23 101
Msa0419380 AT1G26780.2 43.810 105 56 2 12 115 96 198 5.51e-23 98.6
Msa0419380 AT2G25230.1 39.823 113 65 2 9 120 21 131 4.55e-22 93.6
Msa0419380 AT5G14750.4 64.407 59 21 0 58 116 1 59 6.28e-22 90.9
Msa0419380 AT5G14750.2 64.407 59 21 0 58 116 1 59 6.28e-22 90.9
Msa0419380 AT1G73410.1 43.689 103 55 2 14 115 6 106 1.98e-21 92.0
Msa0419380 AT3G29020.1 37.719 114 68 2 7 119 58 169 2.53e-21 91.7
Msa0419380 AT3G29020.2 37.719 114 68 2 7 119 60 171 3.31e-21 92.8
Msa0419380 AT1G73410.2 43.689 103 55 2 14 115 6 106 5.26e-21 90.1
Msa0419380 AT5G17800.1 41.176 102 59 1 14 115 93 193 1.03e-20 91.7
Msa0419380 AT1G66380.2 56.250 80 35 0 10 89 6 85 1.08e-20 86.3
Msa0419380 AT4G33450.1 38.393 112 66 2 5 115 10 119 2.07e-20 89.4
Msa0419380 AT4G00540.2 42.478 113 59 3 8 116 97 207 1.98e-19 89.0
Msa0419380 AT4G00540.1 42.478 113 59 3 8 116 95 205 4.05e-19 88.2
Msa0419380 AT5G40430.1 36.283 113 68 3 9 120 49 158 6.49e-18 82.8
Msa0419380 AT2G37630.1 34.014 147 74 2 17 161 7 132 7.93e-18 84.0
Msa0419380 AT5G61420.1 53.125 64 30 0 81 144 2 65 1.11e-16 79.7
Msa0419380 AT2G02820.3 36.190 105 66 1 17 121 33 136 1.31e-16 80.1
Msa0419380 AT2G02820.1 36.190 105 66 1 17 121 33 136 1.42e-16 80.9
Msa0419380 AT2G02820.2 36.190 105 66 1 17 121 33 136 2.05e-16 80.5
Msa0419380 AT1G14350.2 33.083 133 83 2 17 144 28 159 4.78e-16 79.3
Msa0419380 AT1G14350.1 33.083 133 83 2 17 144 28 159 4.78e-16 79.3
Msa0419380 AT5G39700.1 35.135 111 71 1 9 119 51 160 1.93e-15 74.3
Msa0419380 AT4G25560.2 62.000 50 19 0 69 118 1 50 1.01e-14 72.8
Msa0419380 AT4G28110.2 66.667 39 13 0 88 126 4 42 1.81e-13 68.9
Msa0419380 AT1G74430.2 58.824 51 21 0 77 127 8 58 2.10e-13 68.9
Msa0419380 AT5G15310.3 70.000 40 12 0 88 127 9 48 3.88e-13 68.9
Msa0419380 AT1G22640.2 62.500 40 15 0 88 127 16 55 4.69e-13 67.4
Msa0419380 AT3G46130.2 51.852 54 24 1 73 124 4 57 1.29e-12 66.2
Msa0419380 AT5G59780.1 52.000 50 24 0 70 119 1 50 1.36e-12 65.9
Msa0419380 AT5G14340.2 31.707 123 75 2 88 210 10 123 9.59e-12 63.5
Msa0419380 AT3G18100.1 27.536 138 91 3 13 147 545 676 1.06e-11 66.6
Msa0419380 AT3G18100.3 29.078 141 85 5 13 147 497 628 1.09e-11 66.6
Msa0419380 AT3G18100.4 29.078 141 85 5 13 147 384 515 1.38e-11 66.2
Msa0419380 AT3G18100.2 29.078 141 85 5 13 147 332 463 1.92e-11 65.5
Msa0419380 AT1G74650.3 65.854 41 14 0 77 117 1 41 6.53e-11 62.4
Msa0419380 AT3G28910.2 64.286 42 15 0 77 118 1 42 8.57e-11 62.0

Find 61 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGCTTCTCATCTTCTTC+AGG 0.263770 3_2:+67384114 None:intergenic
TCTTCTGACAGTGACGTTAA+AGG 0.287115 3_2:+67382965 None:intergenic
TTCAATTACATAACCATGTT+TGG 0.314366 3_2:-67384093 Msa0419380:CDS
CAATTTGAACAGAGCCAGTT+TGG 0.318329 3_2:-67383268 Msa0419380:CDS
TAATATTGATTCTCTTATAA+AGG 0.320611 3_2:-67383548 Msa0419380:CDS
ATTAATCACTATAATATTAG+TGG 0.332071 3_2:-67383400 Msa0419380:CDS
GACAGTGGCATTATCATTGA+TGG 0.336941 3_2:+67383511 None:intergenic
ATATTATTACCAGCTAGTTT+AGG 0.367192 3_2:+67384048 None:intergenic
TTCCAAGTTTAGTTCTCCTT+TGG 0.367337 3_2:-67383167 Msa0419380:CDS
TTCATGAAGCACTTGGAAAT+AGG 0.380038 3_2:-67383819 Msa0419380:intron
AACATTCCTCTCTTCAAATC+AGG 0.399385 3_2:+67383874 None:intergenic
TGCTTGAATTGGTTCCAAAC+TGG 0.406508 3_2:+67383254 None:intergenic
TTTGCTTTAAAGAACAGAAA+TGG 0.411738 3_2:+67384160 None:intergenic
TCATCAACAAGACAAGTTCA+TGG 0.452321 3_2:-67383036 Msa0419380:CDS
CACCAAAGGAGAACTAAACT+TGG 0.469802 3_2:+67383165 None:intergenic
AAAGCTTCTCATCTTCTTCA+GGG 0.470762 3_2:+67384115 None:intergenic
ATCTCATTATCTGTTCTCCC+TGG 0.474483 3_2:+67383652 None:intergenic
TACATAACCATGTTTGGTGT+TGG 0.474556 3_2:-67384087 Msa0419380:CDS
AATTATATGGTGAGGGAAAG+GGG 0.475932 3_2:+67382777 None:intergenic
CAAATTGCAGCACAATTACC+AGG 0.477311 3_2:-67383670 Msa0419380:CDS
TTCTATTGTCCTCACAAACA+TGG 0.477454 3_2:-67384187 Msa0419380:exon
ATGCAGGTGGATTAATCTCA+TGG 0.478338 3_2:-67383072 Msa0419380:CDS
TGAGATGGATCAACTATTTG+AGG 0.483337 3_2:-67383897 Msa0419380:CDS
TGAGAAGAAAGTGCTTGAAT+TGG 0.484001 3_2:+67383243 None:intergenic
AATTCTTATGAAACCAACAT+TGG 0.495689 3_2:-67383350 Msa0419380:CDS
ATGAAGTGTTTATGAGTAGC+TGG 0.500962 3_2:+67383574 None:intergenic
CCTACGTTGTTTCACCAACA+AGG 0.512207 3_2:+67382873 None:intergenic
CCATGTTTGGTGTTGGATGT+TGG 0.512330 3_2:-67384080 Msa0419380:CDS
AGTTCAGTTCCTAAACTAGC+TGG 0.517760 3_2:-67384057 Msa0419380:intron
ATCAATCTTCATGAAGCACT+TGG 0.519187 3_2:-67383826 Msa0419380:CDS
TGTGTAGCTAGAATTCTTTG+AGG 0.524402 3_2:+67383478 None:intergenic
TTCTCTTATAAAGGAAGAGA+AGG 0.526947 3_2:-67383539 Msa0419380:CDS
TTGAGGCCTGATTTGAAGAG+AGG 0.529236 3_2:-67383880 Msa0419380:CDS
TGTTCAAATTGTAATAGACT+TGG 0.530608 3_2:+67383280 None:intergenic
AATGGATCAAAATCCAATGT+TGG 0.534322 3_2:+67383337 None:intergenic
CCAACATCCAACACCAAACA+TGG 0.541756 3_2:+67384080 None:intergenic
CTTGAACTTTCATTCACCAA+AGG 0.542251 3_2:+67383151 None:intergenic
ATGCTTAAATTGTAGTACAA+TGG 0.547362 3_2:+67383319 None:intergenic
ATTTCAGGGTTGCAAAGGTG+TGG 0.550921 3_2:-67383934 Msa0419380:intron
TAGTAAGATGTTGATACCAT+AGG 0.557066 3_2:-67382841 Msa0419380:three_prime_UTR
AAATTATTTCAGGGTTGCAA+AGG 0.557540 3_2:-67383939 Msa0419380:intron
TGCTTCTGAGTATTCTTGTG+AGG 0.558944 3_2:+67383441 None:intergenic
TCTATTGTCCTCACAAACAT+GGG 0.566388 3_2:-67384186 Msa0419380:exon
ATTATATGGTGAGGGAAAGG+GGG 0.574795 3_2:+67382778 None:intergenic
AACATGATTAATGAAAATGC+AGG 0.582343 3_2:-67383088 Msa0419380:CDS
GAAAGAGTTGTAGATTGAGA+TGG 0.584976 3_2:-67383912 Msa0419380:CDS
TGCAGGTGGATTAATCTCAT+GGG 0.586240 3_2:-67383071 Msa0419380:CDS
AGGAATGTTCTCAAAACAAG+AGG 0.587388 3_2:-67383860 Msa0419380:CDS
AATTTGATAATAATCACTCA+TGG 0.590701 3_2:+67383114 None:intergenic
ATGATTAATGAAAATGCAGG+TGG 0.597024 3_2:-67383085 Msa0419380:CDS
CTACGTTGTTTCACCAACAA+GGG 0.597589 3_2:+67382874 None:intergenic
AAGCTTCTCATCTTCTTCAG+GGG 0.607980 3_2:+67384116 None:intergenic
AATGGCGACCCATGTTTGTG+AGG 0.614878 3_2:+67384178 None:intergenic
AAGAAGAAACTAATGAAACA+AGG 0.624080 3_2:-67383604 Msa0419380:CDS
AACAAGACAAGTTCATGGCA+AGG 0.635618 3_2:-67383031 Msa0419380:CDS
CCTTGTTGGTGAAACAACGT+AGG 0.640632 3_2:-67382873 Msa0419380:three_prime_UTR
AGAAGAAACTAATGAAACAA+GGG 0.641105 3_2:-67383603 Msa0419380:CDS
AACTCTGAACTATTTAGACA+AGG 0.649610 3_2:+67383214 None:intergenic
GGTGGATTAATCTCATGGGA+AGG 0.658836 3_2:-67383067 Msa0419380:CDS
TGAGGTTGAGAGTGAGACAG+TGG 0.658988 3_2:+67383496 None:intergenic
AAATTGCAGCACAATTACCA+GGG 0.707909 3_2:-67383669 Msa0419380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTAATCAAAATTATTTC+AGG - chr3_2:67383058-67383077 Msa0419380:CDS 10.0%
!! TATTAATCAAAATTATTTCA+GGG - chr3_2:67383059-67383078 Msa0419380:CDS 10.0%
!! TTATTAATCAAAATTATTTC+AGG - chr3_2:67383058-67383077 Msa0419380:CDS 10.0%
!! TATTAATCAAAATTATTTCA+GGG - chr3_2:67383059-67383078 Msa0419380:CDS 10.0%
!!! ATAATGAGATAAAAAACTTT+TGG - chr3_2:67383368-67383387 Msa0419380:CDS 15.0%
!!! TAATATTGATTCTCTTATAA+AGG - chr3_2:67383459-67383478 Msa0419380:CDS 15.0%
!! ATTAATCACTATAATATTAG+TGG - chr3_2:67383607-67383626 Msa0419380:CDS 15.0%
!!! ATAATGAGATAAAAAACTTT+TGG - chr3_2:67383368-67383387 Msa0419380:CDS 15.0%
!!! TAATATTGATTCTCTTATAA+AGG - chr3_2:67383459-67383478 Msa0419380:CDS 15.0%
!! ATTAATCACTATAATATTAG+TGG - chr3_2:67383607-67383626 Msa0419380:CDS 15.0%
!! TTAAAGCAAAAACTAAGAAA+AGG - chr3_2:67382860-67382879 Msa0419380:three_prime_UTR 20.0%
!! AAAAACTAAGAAAAGGTTTA+TGG - chr3_2:67382867-67382886 Msa0419380:three_prime_UTR 20.0%
!! AGTTGTAAAGTAAAAAGATA+AGG + chr3_2:67383035-67383054 None:intergenic 20.0%
!! TTAATAATTTCAAATGTCTC+AGG - chr3_2:67383308-67383327 Msa0419380:CDS 20.0%
!!! AATTTGATAATAATCACTCA+TGG + chr3_2:67383896-67383915 None:intergenic 20.0%
!! AACAAAAAACAGTTCATAAA+TGG + chr3_2:67384104-67384123 None:intergenic 20.0%
!! TTAAAGCAAAAACTAAGAAA+AGG - chr3_2:67382860-67382879 Msa0419380:three_prime_UTR 20.0%
!! AAAAACTAAGAAAAGGTTTA+TGG - chr3_2:67382867-67382886 Msa0419380:three_prime_UTR 20.0%
!! AGTTGTAAAGTAAAAAGATA+AGG + chr3_2:67383035-67383054 None:intergenic 20.0%
!! TTAATAATTTCAAATGTCTC+AGG - chr3_2:67383308-67383327 Msa0419380:CDS 20.0%
!!! AATTTGATAATAATCACTCA+TGG + chr3_2:67383896-67383915 None:intergenic 20.0%
!! AACAAAAAACAGTTCATAAA+TGG + chr3_2:67384104-67384123 None:intergenic 20.0%
!!! TTTGCTTTAAAGAACAGAAA+TGG + chr3_2:67382850-67382869 None:intergenic 25.0%
! TTCAATTACATAACCATGTT+TGG - chr3_2:67382914-67382933 Msa0419380:exon 25.0%
!! ATATTATTACCAGCTAGTTT+AGG + chr3_2:67382962-67382981 None:intergenic 25.0%
! AAGAAGAAACTAATGAAACA+AGG - chr3_2:67383403-67383422 Msa0419380:CDS 25.0%
! AGAAGAAACTAATGAAACAA+GGG - chr3_2:67383404-67383423 Msa0419380:CDS 25.0%
! AATTCTTATGAAACCAACAT+TGG - chr3_2:67383657-67383676 Msa0419380:CDS 25.0%
! ATGCTTAAATTGTAGTACAA+TGG + chr3_2:67383691-67383710 None:intergenic 25.0%
! TGTTCAAATTGTAATAGACT+TGG + chr3_2:67383730-67383749 None:intergenic 25.0%
! AACATGATTAATGAAAATGC+AGG - chr3_2:67383919-67383938 Msa0419380:CDS 25.0%
!!! TTTGCTTTAAAGAACAGAAA+TGG + chr3_2:67382850-67382869 None:intergenic 25.0%
! TTCAATTACATAACCATGTT+TGG - chr3_2:67382914-67382933 Msa0419380:exon 25.0%
!! ATATTATTACCAGCTAGTTT+AGG + chr3_2:67382962-67382981 None:intergenic 25.0%
! AAGAAGAAACTAATGAAACA+AGG - chr3_2:67383403-67383422 Msa0419380:CDS 25.0%
! AGAAGAAACTAATGAAACAA+GGG - chr3_2:67383404-67383423 Msa0419380:CDS 25.0%
! AATTCTTATGAAACCAACAT+TGG - chr3_2:67383657-67383676 Msa0419380:CDS 25.0%
! ATGCTTAAATTGTAGTACAA+TGG + chr3_2:67383691-67383710 None:intergenic 25.0%
! TGTTCAAATTGTAATAGACT+TGG + chr3_2:67383730-67383749 None:intergenic 25.0%
! AACATGATTAATGAAAATGC+AGG - chr3_2:67383919-67383938 Msa0419380:CDS 25.0%
CAATAGAAAAAAGGACACAA+AGG + chr3_2:67382808-67382827 None:intergenic 30.0%
TTGTGAGGACAATAGAAAAA+AGG + chr3_2:67382817-67382836 None:intergenic 30.0%
AAATTATTTCAGGGTTGCAA+AGG - chr3_2:67383068-67383087 Msa0419380:CDS 30.0%
ATAATTTCAAATGTCTCAGG+TGG - chr3_2:67383311-67383330 Msa0419380:CDS 30.0%
TAATTTCAAATGTCTCAGGT+GGG - chr3_2:67383312-67383331 Msa0419380:CDS 30.0%
TTCTCTTATAAAGGAAGAGA+AGG - chr3_2:67383468-67383487 Msa0419380:CDS 30.0%
AATGGATCAAAATCCAATGT+TGG + chr3_2:67383673-67383692 None:intergenic 30.0%
AACTCTGAACTATTTAGACA+AGG + chr3_2:67383796-67383815 None:intergenic 30.0%
ATGATTAATGAAAATGCAGG+TGG - chr3_2:67383922-67383941 Msa0419380:CDS 30.0%
TAGTAAGATGTTGATACCAT+AGG - chr3_2:67384166-67384185 Msa0419380:CDS 30.0%
! CTTTTGCTAGAAATTTCCTA+TGG + chr3_2:67384185-67384204 None:intergenic 30.0%
CAATAGAAAAAAGGACACAA+AGG + chr3_2:67382808-67382827 None:intergenic 30.0%
TTGTGAGGACAATAGAAAAA+AGG + chr3_2:67382817-67382836 None:intergenic 30.0%
AAATTATTTCAGGGTTGCAA+AGG - chr3_2:67383068-67383087 Msa0419380:CDS 30.0%
ATAATTTCAAATGTCTCAGG+TGG - chr3_2:67383311-67383330 Msa0419380:CDS 30.0%
TAATTTCAAATGTCTCAGGT+GGG - chr3_2:67383312-67383331 Msa0419380:CDS 30.0%
TTCTCTTATAAAGGAAGAGA+AGG - chr3_2:67383468-67383487 Msa0419380:CDS 30.0%
AATGGATCAAAATCCAATGT+TGG + chr3_2:67383673-67383692 None:intergenic 30.0%
AACTCTGAACTATTTAGACA+AGG + chr3_2:67383796-67383815 None:intergenic 30.0%
ATGATTAATGAAAATGCAGG+TGG - chr3_2:67383922-67383941 Msa0419380:CDS 30.0%
TAGTAAGATGTTGATACCAT+AGG - chr3_2:67384166-67384185 Msa0419380:CDS 30.0%
! CTTTTGCTAGAAATTTCCTA+TGG + chr3_2:67384185-67384204 None:intergenic 30.0%
TTCTATTGTCCTCACAAACA+TGG - chr3_2:67382820-67382839 Msa0419380:three_prime_UTR 35.0%
TCTATTGTCCTCACAAACAT+GGG - chr3_2:67382821-67382840 Msa0419380:three_prime_UTR 35.0%
AAAGCTTCTCATCTTCTTCA+GGG + chr3_2:67382895-67382914 None:intergenic 35.0%
AAAAGCTTCTCATCTTCTTC+AGG + chr3_2:67382896-67382915 None:intergenic 35.0%
!! TACATAACCATGTTTGGTGT+TGG - chr3_2:67382920-67382939 Msa0419380:CDS 35.0%
GAAAGAGTTGTAGATTGAGA+TGG - chr3_2:67383095-67383114 Msa0419380:CDS 35.0%
TGAGATGGATCAACTATTTG+AGG - chr3_2:67383110-67383129 Msa0419380:CDS 35.0%
AACATTCCTCTCTTCAAATC+AGG + chr3_2:67383136-67383155 None:intergenic 35.0%
AGGAATGTTCTCAAAACAAG+AGG - chr3_2:67383147-67383166 Msa0419380:CDS 35.0%
! ATCAATCTTCATGAAGCACT+TGG - chr3_2:67383181-67383200 Msa0419380:CDS 35.0%
! TTCATGAAGCACTTGGAAAT+AGG - chr3_2:67383188-67383207 Msa0419380:CDS 35.0%
AAATTGCAGCACAATTACCA+GGG - chr3_2:67383338-67383357 Msa0419380:CDS 35.0%
! ATGAAGTGTTTATGAGTAGC+TGG + chr3_2:67383436-67383455 None:intergenic 35.0%
TGTGTAGCTAGAATTCTTTG+AGG + chr3_2:67383532-67383551 None:intergenic 35.0%
!! TGAGAAGAAAGTGCTTGAAT+TGG + chr3_2:67383767-67383786 None:intergenic 35.0%
!! TTCCAAGTTTAGTTCTCCTT+TGG - chr3_2:67383840-67383859 Msa0419380:CDS 35.0%
CTTGAACTTTCATTCACCAA+AGG + chr3_2:67383859-67383878 None:intergenic 35.0%
TCATCAACAAGACAAGTTCA+TGG - chr3_2:67383971-67383990 Msa0419380:intron 35.0%
TTCTATTGTCCTCACAAACA+TGG - chr3_2:67382820-67382839 Msa0419380:three_prime_UTR 35.0%
TCTATTGTCCTCACAAACAT+GGG - chr3_2:67382821-67382840 Msa0419380:three_prime_UTR 35.0%
AAAGCTTCTCATCTTCTTCA+GGG + chr3_2:67382895-67382914 None:intergenic 35.0%
AAAAGCTTCTCATCTTCTTC+AGG + chr3_2:67382896-67382915 None:intergenic 35.0%
!! TACATAACCATGTTTGGTGT+TGG - chr3_2:67382920-67382939 Msa0419380:CDS 35.0%
GAAAGAGTTGTAGATTGAGA+TGG - chr3_2:67383095-67383114 Msa0419380:CDS 35.0%
TGAGATGGATCAACTATTTG+AGG - chr3_2:67383110-67383129 Msa0419380:CDS 35.0%
AACATTCCTCTCTTCAAATC+AGG + chr3_2:67383136-67383155 None:intergenic 35.0%
AGGAATGTTCTCAAAACAAG+AGG - chr3_2:67383147-67383166 Msa0419380:CDS 35.0%
! ATCAATCTTCATGAAGCACT+TGG - chr3_2:67383181-67383200 Msa0419380:CDS 35.0%
! TTCATGAAGCACTTGGAAAT+AGG - chr3_2:67383188-67383207 Msa0419380:CDS 35.0%
AAATTGCAGCACAATTACCA+GGG - chr3_2:67383338-67383357 Msa0419380:CDS 35.0%
! ATGAAGTGTTTATGAGTAGC+TGG + chr3_2:67383436-67383455 None:intergenic 35.0%
TGTGTAGCTAGAATTCTTTG+AGG + chr3_2:67383532-67383551 None:intergenic 35.0%
!! TGAGAAGAAAGTGCTTGAAT+TGG + chr3_2:67383767-67383786 None:intergenic 35.0%
!! TTCCAAGTTTAGTTCTCCTT+TGG - chr3_2:67383840-67383859 Msa0419380:CDS 35.0%
CTTGAACTTTCATTCACCAA+AGG + chr3_2:67383859-67383878 None:intergenic 35.0%
TCATCAACAAGACAAGTTCA+TGG - chr3_2:67383971-67383990 Msa0419380:intron 35.0%
AAGCTTCTCATCTTCTTCAG+GGG + chr3_2:67382894-67382913 None:intergenic 40.0%
AGTTCAGTTCCTAAACTAGC+TGG - chr3_2:67382950-67382969 Msa0419380:CDS 40.0%
CAAATTGCAGCACAATTACC+AGG - chr3_2:67383337-67383356 Msa0419380:CDS 40.0%
ATCTCATTATCTGTTCTCCC+TGG + chr3_2:67383358-67383377 None:intergenic 40.0%
GACAGTGGCATTATCATTGA+TGG + chr3_2:67383499-67383518 None:intergenic 40.0%
TGCTTCTGAGTATTCTTGTG+AGG + chr3_2:67383569-67383588 None:intergenic 40.0%
CAATTTGAACAGAGCCAGTT+TGG - chr3_2:67383739-67383758 Msa0419380:intron 40.0%
! TGCTTGAATTGGTTCCAAAC+TGG + chr3_2:67383756-67383775 None:intergenic 40.0%
CACCAAAGGAGAACTAAACT+TGG + chr3_2:67383845-67383864 None:intergenic 40.0%
!! ATGCAGGTGGATTAATCTCA+TGG - chr3_2:67383935-67383954 Msa0419380:intron 40.0%
!! TGCAGGTGGATTAATCTCAT+GGG - chr3_2:67383936-67383955 Msa0419380:intron 40.0%
AACAAGACAAGTTCATGGCA+AGG - chr3_2:67383976-67383995 Msa0419380:intron 40.0%
TCTTCTGACAGTGACGTTAA+AGG + chr3_2:67384045-67384064 None:intergenic 40.0%
! TGTTGAGTGTTTTCCCTTGT+TGG - chr3_2:67384120-67384139 Msa0419380:CDS 40.0%
! CTACGTTGTTTCACCAACAA+GGG + chr3_2:67384136-67384155 None:intergenic 40.0%
AAGCTTCTCATCTTCTTCAG+GGG + chr3_2:67382894-67382913 None:intergenic 40.0%
AGTTCAGTTCCTAAACTAGC+TGG - chr3_2:67382950-67382969 Msa0419380:CDS 40.0%
CAAATTGCAGCACAATTACC+AGG - chr3_2:67383337-67383356 Msa0419380:CDS 40.0%
ATCTCATTATCTGTTCTCCC+TGG + chr3_2:67383358-67383377 None:intergenic 40.0%
GACAGTGGCATTATCATTGA+TGG + chr3_2:67383499-67383518 None:intergenic 40.0%
TGCTTCTGAGTATTCTTGTG+AGG + chr3_2:67383569-67383588 None:intergenic 40.0%
CAATTTGAACAGAGCCAGTT+TGG - chr3_2:67383739-67383758 Msa0419380:intron 40.0%
! TGCTTGAATTGGTTCCAAAC+TGG + chr3_2:67383756-67383775 None:intergenic 40.0%
CACCAAAGGAGAACTAAACT+TGG + chr3_2:67383845-67383864 None:intergenic 40.0%
!! ATGCAGGTGGATTAATCTCA+TGG - chr3_2:67383935-67383954 Msa0419380:intron 40.0%
!! TGCAGGTGGATTAATCTCAT+GGG - chr3_2:67383936-67383955 Msa0419380:intron 40.0%
AACAAGACAAGTTCATGGCA+AGG - chr3_2:67383976-67383995 Msa0419380:intron 40.0%
TCTTCTGACAGTGACGTTAA+AGG + chr3_2:67384045-67384064 None:intergenic 40.0%
! TGTTGAGTGTTTTCCCTTGT+TGG - chr3_2:67384120-67384139 Msa0419380:CDS 40.0%
! CTACGTTGTTTCACCAACAA+GGG + chr3_2:67384136-67384155 None:intergenic 40.0%
CCAACATCCAACACCAAACA+TGG + chr3_2:67382930-67382949 None:intergenic 45.0%
!! CCATGTTTGGTGTTGGATGT+TGG - chr3_2:67382927-67382946 Msa0419380:CDS 45.0%
ATTTCAGGGTTGCAAAGGTG+TGG - chr3_2:67383073-67383092 Msa0419380:CDS 45.0%
! TTGAGGCCTGATTTGAAGAG+AGG - chr3_2:67383127-67383146 Msa0419380:CDS 45.0%
!! GGTGGATTAATCTCATGGGA+AGG - chr3_2:67383940-67383959 Msa0419380:intron 45.0%
! CCTACGTTGTTTCACCAACA+AGG + chr3_2:67384137-67384156 None:intergenic 45.0%
! CCTTGTTGGTGAAACAACGT+AGG - chr3_2:67384134-67384153 Msa0419380:CDS 45.0%
CCAACATCCAACACCAAACA+TGG + chr3_2:67382930-67382949 None:intergenic 45.0%
!! CCATGTTTGGTGTTGGATGT+TGG - chr3_2:67382927-67382946 Msa0419380:CDS 45.0%
ATTTCAGGGTTGCAAAGGTG+TGG - chr3_2:67383073-67383092 Msa0419380:CDS 45.0%
! TTGAGGCCTGATTTGAAGAG+AGG - chr3_2:67383127-67383146 Msa0419380:CDS 45.0%
!! GGTGGATTAATCTCATGGGA+AGG - chr3_2:67383940-67383959 Msa0419380:intron 45.0%
! CCTACGTTGTTTCACCAACA+AGG + chr3_2:67384137-67384156 None:intergenic 45.0%
! CCTTGTTGGTGAAACAACGT+AGG - chr3_2:67384134-67384153 Msa0419380:CDS 45.0%
AATGGCGACCCATGTTTGTG+AGG + chr3_2:67382832-67382851 None:intergenic 50.0%
TGAGGTTGAGAGTGAGACAG+TGG + chr3_2:67383514-67383533 None:intergenic 50.0%
AATGGCGACCCATGTTTGTG+AGG + chr3_2:67382832-67382851 None:intergenic 50.0%
TGAGGTTGAGAGTGAGACAG+TGG + chr3_2:67383514-67383533 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 67382792 67384237 67382792 ID=Msa0419380;Name=Msa0419380
chr3_2 mRNA 67382792 67384237 67382792 ID=Msa0419380-mRNA-1;Parent=Msa0419380;Name=Msa0419380-mRNA-1;_AED=0.08;_eAED=0.08;_QI=47|1|1|1|1|1|3|127|347
chr3_2 exon 67382792 67383699 67382792 ID=Msa0419380-mRNA-1:exon:15679;Parent=Msa0419380-mRNA-1
chr3_2 exon 67383820 67383949 67383820 ID=Msa0419380-mRNA-1:exon:15678;Parent=Msa0419380-mRNA-1
chr3_2 exon 67384058 67384237 67384058 ID=Msa0419380-mRNA-1:exon:15677;Parent=Msa0419380-mRNA-1
chr3_2 five_prime_UTR 67384191 67384237 67384191 ID=Msa0419380-mRNA-1:five_prime_utr;Parent=Msa0419380-mRNA-1
chr3_2 CDS 67384058 67384190 67384058 ID=Msa0419380-mRNA-1:cds;Parent=Msa0419380-mRNA-1
chr3_2 CDS 67383820 67383949 67383820 ID=Msa0419380-mRNA-1:cds;Parent=Msa0419380-mRNA-1
chr3_2 CDS 67382919 67383699 67382919 ID=Msa0419380-mRNA-1:cds;Parent=Msa0419380-mRNA-1
chr3_2 three_prime_UTR 67382792 67382918 67382792 ID=Msa0419380-mRNA-1:three_prime_utr;Parent=Msa0419380-mRNA-1
Gene Sequence

>Msa0419380

ATGGGTCGCCATTTCTGTTCTTTAAAGCAAAAACTAAGAAAAGGTTTATGGTCCCCTGAAGAAGATGAGAAGCTTTTCAATTACATAACCATGTTTGGTGTTGGATGTTGGAGTTCAGTTCCTAAACTAGCTGGGTTGCAAAGGTGTGGAAAGAGTTGTAGATTGAGATGGATCAACTATTTGAGGCCTGATTTGAAGAGAGGAATGTTCTCAAAACAAGAGGAAGATCTTATTATCAATCTTCATGAAGCACTTGGAAATAGGTGGGCTCAAATTGCAGCACAATTACCAGGGAGAACAGATAATGAGATAAAAAACTTTTGGAATTCAAGTTTGAAGAAGAAACTAATGAAACAAGGGATTGATCCAGCTACTCATAAACACTTCATCAATAATATTGATTCTCTTATAAAGGAAGAGAAGGAAAAACCATCAATGATAATGCCACTGTCTCACTCTCAACCTCAAAGAATTCTAGCTACACACACAATGCTAGAATCCTCACAAGAATACTCAGAAGCACTTCTAATGAGTGATTTGATTAATCACTATAATATTAGTGGATTAGCTTTAACAGAAGCTTCAAGAAAAATTCTTATGAAACCAACATTGGATTTTGATCCATTGTACTACAATTTAAGCATGAACAATTATTATCAGCCAAGTCTATTACAATTTGAACAGAGCCAGTTTGGAACCAATTCAAGCACTTTCTTCTCATCAATGCCTTGTCTAAATAGTTCAGAGTTTTCAGACAATATCAACAACTCAGTTTCCAAGTTTAGTTCTCCTTTGGTGAATGAAAGTTCAAGCAATAGTACTTCAACCATGAGTGATTATTATCAAATTAGCAACATGATTAATGAAAATGCAGGTGGATTAATCTCATGGGAAGGTGAAGAATTCATCAACAAGACAAGTTCATGGCAAGGACAGATGCTGAGTCATAATAATTCAATAGATTTCAGTACATATCCTTTAACGTCACTGTCAGAAGATCTAAGTAATATTGAAGCTAATTTTGATGTATTTCACCATTTATGA
Protein sequence

>Msa0419380

MGRHFCSLKQKLRKGLWSPEEDEKLFNYITMFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSKQEEDLIINLHEALGNRWAQIAAQLPGRTDNEIKNFWNSSLKKKLMKQGIDPATHKHFINNIDSLIKEEKEKPSMIMPLSHSQPQRILATHTMLESSQEYSEALLMSDLINHYNISGLALTEASRKILMKPTLDFDPLYYNLSMNNYYQPSLLQFEQSQFGTNSSTFFSSMPCLNSSEFSDNINNSVSKFSSPLVNESSSNSTSTMSDYYQISNMINENAGGLISWEGEEFINKTSSWQGQMLSHNNSIDFSTYPLTSLSEDLSNIEANFDVFHHL*