AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0420620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0420620 MtrunA17_Chr3g0120221 86.517 178 24 0 3 180 6 183 1.09e-114 326
Msa0420620 MtrunA17_Chr3g0120221 73.913 46 12 0 197 242 116 161 3.95e-18 79.7
Msa0420620 MtrunA17_Chr3g0120841 70.175 171 47 3 14 182 22 190 8.20e-73 232
Msa0420620 MtrunA17_Chr3g0120841 69.048 42 13 0 201 242 125 166 3.13e-15 74.7
Msa0420620 MtrunA17_Chr7g0239471 66.667 129 43 0 46 174 49 177 7.72e-55 183
Msa0420620 MtrunA17_Chr2g0290321 53.892 167 74 2 14 179 20 184 1.11e-54 184
Msa0420620 MtrunA17_Chr2g0290321 58.696 46 19 0 197 242 117 162 1.66e-12 66.6
Msa0420620 MtrunA17_Chr2g0290341 59.712 139 54 1 36 174 26 162 1.93e-54 182
Msa0420620 MtrunA17_Chr2g0290341 54.348 46 21 0 197 242 101 146 5.51e-11 62.0
Msa0420620 MtrunA17_Chr3g0120191 77.922 77 17 0 104 180 11 87 1.23e-37 128
Msa0420620 MtrunA17_Chr3g0120191 76.087 46 11 0 197 242 20 65 4.27e-20 82.8
Msa0420620 MtrunA17_Chr3g0120181 72.131 61 15 1 32 92 1 59 4.00e-25 94.4
Msa0420620 MtrunA17_Chr7g0238851 51.250 80 37 1 13 92 4 81 4.22e-19 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0420620 AT4G16420.2 54.321 162 70 1 13 174 18 175 1.23e-58 193
Msa0420620 AT4G16420.2 58.696 46 19 0 197 242 114 159 2.61e-13 69.3
Msa0420620 AT4G16420.3 54.321 162 70 1 13 174 18 175 1.26e-58 193
Msa0420620 AT4G16420.3 58.696 46 19 0 197 242 114 159 2.67e-13 69.3
Msa0420620 AT4G16420.1 54.321 162 70 1 13 174 18 175 1.31e-58 193
Msa0420620 AT4G16420.1 58.696 46 19 0 197 242 114 159 2.68e-13 69.3
Msa0420620 AT3G07740.1 52.096 167 78 2 14 179 21 186 1.19e-52 179
Msa0420620 AT3G07740.1 50.000 46 23 0 197 242 120 165 2.12e-11 63.9
Msa0420620 AT3G07740.3 58.955 134 55 0 46 179 32 165 7.20e-52 176
Msa0420620 AT3G07740.3 50.000 46 23 0 197 242 99 144 2.16e-11 63.5
Msa0420620 AT3G07740.4 50.000 174 78 3 14 179 21 193 5.33e-50 172
Msa0420620 AT3G07740.4 50.000 46 23 0 197 242 127 172 2.09e-11 63.9
Msa0420620 AT3G07740.2 58.772 114 47 0 66 179 2 115 2.42e-42 150
Msa0420620 AT3G07740.2 50.000 46 23 0 197 242 49 94 1.83e-11 63.9

Find 50 sgRNAs with CRISPR-Local

Find 419 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTGCAAAATTGATATTTC+AGG 0.197023 3_2:+69234638 Msa0420620:CDS
ACATGTATGGATTTGCAAAT+TGG 0.237240 3_2:+69240026 Msa0420620:CDS
TTGCTCTTTGTTCTTTCCCT+TGG 0.303043 3_2:-69235591 None:intergenic
TTTCATACCATAACCTGATA+TGG 0.306280 3_2:-69234758 None:intergenic
TTCAGAGTCAGCTCTGCATT+TGG 0.311067 3_2:-69241485 None:intergenic
ACATGTATGGATTTGAGAAT+TGG 0.349491 3_2:+69235376 Msa0420620:CDS
GGTTTAGAAACTTCATTTGC+AGG 0.364501 3_2:+69234457 Msa0420620:CDS
TAAAAGCAATCATCCATATC+AGG 0.391279 3_2:+69234745 Msa0420620:CDS
TCTTCATGCGCACTCCAATC+TGG 0.395273 3_2:-69235211 None:intergenic
TTATAGTGGTCAATACATTC+AGG 0.410127 3_2:-69235435 None:intergenic
CAATCATCCATATCAGGTTA+TGG 0.442670 3_2:+69234751 Msa0420620:CDS
GAAGTACGCGCACTCCAATC+TGG 0.448025 3_2:-69239868 None:intergenic
ACTGCAAAATTGATATTTCA+GGG 0.454131 3_2:+69234639 Msa0420620:CDS
GTAGGATTTGTCTTATTCCA+AGG 0.468148 3_2:+69235574 Msa0420620:intron
TTCCGCTTACATGTCCAGAT+TGG 0.474697 3_2:+69235197 Msa0420620:CDS
TTCCGCTTACATGTCCAGAT+TGG 0.474697 3_2:+69239854 Msa0420620:CDS
AGAGTCAGCTCTGCATTTGG+AGG 0.489977 3_2:-69241482 None:intergenic
AAAAGCGAATCTCAGTGTAT+TGG 0.503151 3_2:+69240076 Msa0420620:CDS
TCAGATATACATCATTATAG+TGG 0.505363 3_2:-69240099 None:intergenic
ATGGTGTTGCCGAACATGTT+GGG 0.506625 3_2:+69235400 Msa0420620:CDS
TCAAATAGCCTTACAGGTAG+AGG 0.513546 3_2:-69240136 None:intergenic
TCTCAAATCCATACATGTCA+AGG 0.519033 3_2:-69235371 None:intergenic
TGAAGAGAGGTTACTTCTTG+AGG 0.519406 3_2:+69235228 Msa0420620:CDS
GAGTTGATCTCGCTTTCCCA+TGG 0.527997 3_2:-69235621 None:intergenic
TCAAATAGACTTACAGGAAG+AGG 0.528922 3_2:-69235486 None:intergenic
TTGCAAATCCATACATGTCA+AGG 0.533100 3_2:-69240021 None:intergenic
CAAAGAGCAACTCCGTGCCA+TGG 0.534697 3_2:+69235604 Msa0420620:CDS
TAGGATTTGTCTTATTCCAA+GGG 0.536827 3_2:+69235575 Msa0420620:intron
ATGGTGTTGCTGAACATGTT+GGG 0.547672 3_2:+69240050 Msa0420620:CDS
CAAAATTGATATTTCAGGGA+AGG 0.550461 3_2:+69234643 Msa0420620:CDS
AAAGAGCAACTCCGTGCCAT+GGG 0.560848 3_2:+69235605 Msa0420620:CDS
AAAGGCTGCTTTAAATGCTG+AGG 0.565868 3_2:+69234435 Msa0420620:CDS
CTTACAGGTAGAGGAAAAGA+TGG 0.568809 3_2:-69240127 None:intergenic
AAGGCTGCTTTAAATGCTGA+GGG 0.569370 3_2:+69234436 Msa0420620:CDS
AAGCGAGATCAACTCAAGAA+AGG 0.572505 3_2:+69235629 Msa0420620:CDS
AATGGTGTTGCCGAACATGT+TGG 0.573997 3_2:+69235399 Msa0420620:CDS
CTTACAGGAAGAGGAGTACA+TGG 0.578358 3_2:-69235477 None:intergenic
TCAGATATACCACATTATAG+TGG 0.585833 3_2:-69235449 None:intergenic
TATGGATTTGCAAATTGGAA+TGG 0.589389 3_2:+69240031 Msa0420620:CDS
CATGGAAGTCACTGATGGCA+AGG 0.592151 3_2:+69234589 Msa0420620:CDS
TATGGATTTGAGAATTGGAA+TGG 0.599113 3_2:+69235381 Msa0420620:CDS
CTCAAATCCATACATGTCAA+GGG 0.602788 3_2:-69235370 None:intergenic
AATGGTGTTGCTGAACATGT+TGG 0.605755 3_2:+69240049 Msa0420620:CDS
GATCTCGCTTTCCCATGGCA+CGG 0.612939 3_2:-69235616 None:intergenic
ATTGGAGTGCGCATGAAGAG+AGG 0.617745 3_2:+69235215 Msa0420620:CDS
TGCAAATCCATACATGTCAA+GGG 0.619428 3_2:-69240020 None:intergenic
CTCCAATCTGGACATGTAAG+CGG 0.649769 3_2:-69235199 None:intergenic
CTCCAATCTGGACATGTAAG+CGG 0.649769 3_2:-69239856 None:intergenic
GTAGGCATGGAAGTCACTGA+TGG 0.694328 3_2:+69234584 Msa0420620:intron
ATGTATTGACCACTATAATG+TGG 0.749035 3_2:+69235440 Msa0420620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTATTTTTTTTTAGTA+AGG + chr3_2:69236864-69236883 Msa0420620:intron 10.0%
!! TTAACAATATTCAATAAATT+TGG - chr3_2:69237311-69237330 None:intergenic 10.0%
!! TTAAAAATAATTACACATTT+GGG - chr3_2:69238953-69238972 None:intergenic 10.0%
!! ATTAAAAATAATTACACATT+TGG - chr3_2:69238954-69238973 None:intergenic 10.0%
!! AAATTATGTTTAAATTGATT+TGG - chr3_2:69238996-69239015 None:intergenic 10.0%
!!! ATTTTATTTTAGTTTTTTAC+AGG + chr3_2:69239819-69239838 Msa0420620:intron 10.0%
!! ATGATAAAATGAAATAATTA+AGG - chr3_2:69239978-69239997 None:intergenic 10.0%
!!! CGTAAAAAATTAATTTTTTT+TGG - chr3_2:69240328-69240347 None:intergenic 10.0%
!!! AAAAAAATTAATTTTTTACG+TGG + chr3_2:69240328-69240347 Msa0420620:intron 10.0%
!!! AAAAAATTAATTTTTTACGT+GGG + chr3_2:69240329-69240348 Msa0420620:intron 10.0%
!!! ACATATAAGATTTTAATTTT+TGG - chr3_2:69241226-69241245 None:intergenic 10.0%
!!! ATATTTTTTTCTCTCTTTTT+GGG - chr3_2:69234149-69234168 None:intergenic 15.0%
!!! TATATTTTTTTCTCTCTTTT+TGG - chr3_2:69234150-69234169 None:intergenic 15.0%
!! AACAATAATGTGTTAATTAA+AGG - chr3_2:69234513-69234532 None:intergenic 15.0%
!! GGTATTACATAATATAATAA+CGG - chr3_2:69234550-69234569 None:intergenic 15.0%
!! TGTTATGATAAAATGAAATA+CGG - chr3_2:69235332-69235351 None:intergenic 15.0%
!!! TTTTTATTGTTCTAATGTTA+TGG + chr3_2:69236208-69236227 Msa0420620:intron 15.0%
!!! TTATCTTCTGATTTTTTTTT+TGG + chr3_2:69236320-69236339 Msa0420620:intron 15.0%
!!! GATTAAATTATTTTTCTCAA+GGG - chr3_2:69236369-69236388 None:intergenic 15.0%
!!! TGATTAAATTATTTTTCTCA+AGG - chr3_2:69236370-69236389 None:intergenic 15.0%
!! CACTTAAATAAATAAGTAAA+AGG - chr3_2:69236510-69236529 None:intergenic 15.0%
!!! AATTTAAAATTTAGTTGAGT+TGG - chr3_2:69236697-69236716 None:intergenic 15.0%
!!! TTTTATGATATTGTTTGTAT+AGG + chr3_2:69236837-69236856 Msa0420620:intron 15.0%
!! CAGAAATAAATAAATAGATA+TGG + chr3_2:69237532-69237551 Msa0420620:intron 15.0%
!!! TTGGACTTTTAAATATTTTT+AGG - chr3_2:69237698-69237717 None:intergenic 15.0%
!!! TTTAAAAGTCCAATTTTTTT+CGG + chr3_2:69237705-69237724 Msa0420620:intron 15.0%
!! ACTTCATATTTGATTAAATT+TGG - chr3_2:69237743-69237762 None:intergenic 15.0%
!! TAGTATATATACACTAAATT+TGG - chr3_2:69237880-69237899 None:intergenic 15.0%
!!! ATTTTTGTTTTATATCATAC+TGG + chr3_2:69238427-69238446 Msa0420620:intron 15.0%
!! ATATTATCATAATCAATTCA+TGG + chr3_2:69238548-69238567 Msa0420620:intron 15.0%
!!! AGTTTTTTTTAAGTTTCAAA+TGG + chr3_2:69239038-69239057 Msa0420620:intron 15.0%
!! AAAATAATGATAATTACTCT+TGG - chr3_2:69239403-69239422 None:intergenic 15.0%
!! TTGAATTAATACCATTATAA+CGG + chr3_2:69239765-69239784 Msa0420620:intron 15.0%
!! ATAAAATAAATTAATGTGGT+AGG - chr3_2:69239806-69239825 None:intergenic 15.0%
!!! ATAAGATTTTAATTTTTGGA+GGG - chr3_2:69241222-69241241 None:intergenic 15.0%
!!! TATAAGATTTTAATTTTTGG+AGG - chr3_2:69241223-69241242 None:intergenic 15.0%
!! CACAATATTTAAGAAAAAAC+AGG - chr3_2:69234800-69234819 None:intergenic 20.0%
!!! TAGTGAAAAGTATTTTTCAA+GGG - chr3_2:69234855-69234874 None:intergenic 20.0%
!!! TTAGTGAAAAGTATTTTTCA+AGG - chr3_2:69234856-69234875 None:intergenic 20.0%
!!! TAAAAAAAATTGGTTTCGTT+TGG - chr3_2:69235773-69235792 None:intergenic 20.0%
!! TATTTGTAGAAATACCAAAT+AGG + chr3_2:69235815-69235834 Msa0420620:intron 20.0%
!! CCAATTAGATACTAAAATAA+AGG - chr3_2:69235959-69235978 None:intergenic 20.0%
!!! CCTTTATTTTAGTATCTAAT+TGG + chr3_2:69235956-69235975 Msa0420620:intron 20.0%
!!! TTATTTTATTTTCAACCATC+TGG + chr3_2:69236052-69236071 Msa0420620:intron 20.0%
!!! TAAAAAAAAGCAGGTTTTTT+AGG + chr3_2:69236255-69236274 Msa0420620:intron 20.0%
!!! AAAAAAAAGCAGGTTTTTTA+GGG + chr3_2:69236256-69236275 Msa0420620:intron 20.0%
!!! TAAATCATACTCTTATTTTG+AGG - chr3_2:69236463-69236482 None:intergenic 20.0%
!!! AATCATATCAAAAGTGTAAT+TGG - chr3_2:69236805-69236824 None:intergenic 20.0%
!!! ACTAAAAAAAAGTATCACTT+TGG + chr3_2:69236904-69236923 Msa0420620:intron 20.0%
!! AATAAATGCATAAAAATAGC+TGG - chr3_2:69237410-69237429 None:intergenic 20.0%
!!! ATTTTGTGATTAATTCTCAA+AGG - chr3_2:69237434-69237453 None:intergenic 20.0%
!!! ATTTTTAGGATAGCATTTTT+AGG - chr3_2:69237684-69237703 None:intergenic 20.0%
!!! TTAAAAGTCCAATTTTTTTC+GGG + chr3_2:69237706-69237725 Msa0420620:intron 20.0%
!!! AAAAAAAAAGAATAGTTCTG+AGG - chr3_2:69238313-69238332 None:intergenic 20.0%
!! ATAAAACAAAAATGTGACTT+TGG - chr3_2:69238420-69238439 None:intergenic 20.0%
!!! ACAGTTTTAATAGTACTTTT+TGG - chr3_2:69238623-69238642 None:intergenic 20.0%
!!! AAAAAGTACTATTAAAACTG+TGG + chr3_2:69238622-69238641 Msa0420620:intron 20.0%
!! CTTTGATCAAATAAAATAGA+CGG - chr3_2:69238798-69238817 None:intergenic 20.0%
!! AAAACAAAGTAAATAGATTG+AGG - chr3_2:69241063-69241082 None:intergenic 20.0%
! AAAATATAAAGAGCAAGAAC+AGG + chr3_2:69234162-69234181 Msa0420620:intron 25.0%
! ACAGGTTGTAAAAATATACA+AGG + chr3_2:69234180-69234199 Msa0420620:intron 25.0%
! TTGTAAAAATATACAAGGCT+CGG + chr3_2:69234185-69234204 Msa0420620:intron 25.0%
! ATTTGATGAAACAAGAAGAA+TGG - chr3_2:69234324-69234343 None:intergenic 25.0%
!! GTAATACCATTTTCTAAATG+TGG + chr3_2:69234562-69234581 Msa0420620:intron 25.0%
! TACTGCAAAATTGATATTTC+AGG + chr3_2:69234638-69234657 Msa0420620:CDS 25.0%
! ACTGCAAAATTGATATTTCA+GGG + chr3_2:69234639-69234658 Msa0420620:CDS 25.0%
!! ATAGCTAATTAAAAAGCACA+TGG - chr3_2:69234910-69234929 None:intergenic 25.0%
! CTTTATATTTCTTCCCATTA+TGG + chr3_2:69234997-69235016 Msa0420620:intron 25.0%
! TGAATTCGTTTAGTAATTGA+AGG + chr3_2:69235136-69235155 Msa0420620:intron 25.0%
!!! ACGAAACCAATTTTTTTTAG+AGG + chr3_2:69235774-69235793 Msa0420620:intron 25.0%
!!! AAACCAATTTTTTTTAGAGG+TGG + chr3_2:69235777-69235796 Msa0420620:intron 25.0%
! ATACCAAATAGGTGAAAATT+AGG + chr3_2:69235826-69235845 Msa0420620:intron 25.0%
!! TTACCTAATTTTCACCTATT+TGG - chr3_2:69235832-69235851 None:intergenic 25.0%
! AGAATGGAAATTTCTTTGAT+AGG + chr3_2:69235852-69235871 Msa0420620:intron 25.0%
!! TTTATGACATTGATTAATGC+AGG + chr3_2:69235980-69235999 Msa0420620:intron 25.0%
!! TTATGACATTGATTAATGCA+GGG + chr3_2:69235981-69236000 Msa0420620:intron 25.0%
!! TTTTTATTGCATTCATTCGA+TGG + chr3_2:69236184-69236203 Msa0420620:intron 25.0%
! TTATTGTTCTAATGTTATGG+TGG + chr3_2:69236211-69236230 Msa0420620:intron 25.0%
! TATTGTTCTAATGTTATGGT+GGG + chr3_2:69236212-69236231 Msa0420620:intron 25.0%
! TGTCATGATTAAAAAAAAGC+AGG + chr3_2:69236246-69236265 Msa0420620:intron 25.0%
!!! AAAAAAAGCAGGTTTTTTAG+GGG + chr3_2:69236257-69236276 Msa0420620:intron 25.0%
! TGAGGAAAAAAAATGAAATG+TGG - chr3_2:69236414-69236433 None:intergenic 25.0%
!!! TCTACTTTTTCATTACTTTG+AGG - chr3_2:69236432-69236451 None:intergenic 25.0%
!!! AAATTTAGTTGAGTTGGTTT+CGG - chr3_2:69236691-69236710 None:intergenic 25.0%
!! AATTATACGTACTTTAGAAG+TGG + chr3_2:69236963-69236982 Msa0420620:intron 25.0%
! CACAAATACGAAATTGAATA+CGG + chr3_2:69237365-69237384 Msa0420620:intron 25.0%
! CTATGATCATATACTAATGT+AGG - chr3_2:69237620-69237639 None:intergenic 25.0%
!! ATAGAGGTTCAAAATTTTGA+GGG + chr3_2:69237650-69237669 Msa0420620:intron 25.0%
!!! GATAGCATTTTTAGGAATTT+AGG - chr3_2:69237676-69237695 None:intergenic 25.0%
!!! TAAAAGTCCAATTTTTTTCG+GGG + chr3_2:69237707-69237726 Msa0420620:intron 25.0%
!! AACCTAAACCATCAATTTTT+AGG + chr3_2:69237851-69237870 Msa0420620:intron 25.0%
!! TTCCTAAAAATTGATGGTTT+AGG - chr3_2:69237856-69237875 None:intergenic 25.0%
! TTTGGATTCCTAAAAATTGA+TGG - chr3_2:69237862-69237881 None:intergenic 25.0%
!!! AGAGTTTTTGGTAATTTAGT+CGG + chr3_2:69237940-69237959 Msa0420620:intron 25.0%
! AAACTTTCACTATAAGATCA+TGG + chr3_2:69238097-69238116 Msa0420620:intron 25.0%
! AACTTTCACTATAAGATCAT+GGG + chr3_2:69238098-69238117 Msa0420620:intron 25.0%
!!! TTTGTTTTATATCATACTGG+TGG + chr3_2:69238430-69238449 Msa0420620:intron 25.0%
! TTACACATTGCAAGATATTA+GGG + chr3_2:69238506-69238525 Msa0420620:intron 25.0%
!!! GTTTTAATAGTACTTTTTGG+AGG - chr3_2:69238620-69238639 None:intergenic 25.0%
! TAAAATAGACGGTTAAGATT+TGG - chr3_2:69238787-69238806 None:intergenic 25.0%
!!! CGTCTATTTTATTTGATCAA+AGG + chr3_2:69238796-69238815 Msa0420620:intron 25.0%
! AGTATCAAATAAGTGTGTAT+AGG + chr3_2:69239143-69239162 Msa0420620:intron 25.0%
! GTATCAAATAAGTGTGTATA+GGG + chr3_2:69239144-69239163 Msa0420620:intron 25.0%
!! TGCAATAAATTACCCTTTTA+AGG - chr3_2:69239208-69239227 None:intergenic 25.0%
!!! CTTACTTGCTATATGTTAAA+TGG + chr3_2:69239938-69239957 Msa0420620:intron 25.0%
!!! TAACAAGCTTGTTTTGTTTT+AGG + chr3_2:69239997-69240016 Msa0420620:intron 25.0%
! TCAGATATACATCATTATAG+TGG - chr3_2:69240102-69240121 None:intergenic 25.0%
!!! TAATTTTTTACGTGGGTTAA+TGG + chr3_2:69240336-69240355 Msa0420620:intron 25.0%
!!! AATTTTTTACGTGGGTTAAT+GGG + chr3_2:69240337-69240356 Msa0420620:intron 25.0%
!! TAGGATTTGTCTTATTCTAT+GGG + chr3_2:69240448-69240467 Msa0420620:intron 25.0%
! AGTAAGGATAGTAGATAATA+TGG - chr3_2:69240649-69240668 None:intergenic 25.0%
!!! ATTTGAAGGGAAAGTTTTAT+CGG - chr3_2:69240960-69240979 None:intergenic 25.0%
!! AAAGTATCACTCAATTTGAA+GGG - chr3_2:69240973-69240992 None:intergenic 25.0%
! AGCTACTCATATAATAAGTT+TGG - chr3_2:69241189-69241208 None:intergenic 25.0%
! GTCAAAGAGAATATATTATC+CGG - chr3_2:69241331-69241350 None:intergenic 25.0%
! TAAAAATGCAACCAACAAAT+CGG - chr3_2:69241420-69241439 None:intergenic 25.0%
!!! AAAAGCAGCACTTTTTTTCT+TGG - chr3_2:69234402-69234421 None:intergenic 30.0%
!!! AAGAAAAAAAGTGCTGCTTT+TGG + chr3_2:69234401-69234420 Msa0420620:CDS 30.0%
! CTTTTGGATCCAAGAAAAAA+AGG + chr3_2:69234417-69234436 Msa0420620:CDS 30.0%
!!! TTAAAGCAGCCTTTTTTTCT+TGG - chr3_2:69234429-69234448 None:intergenic 30.0%
! TACCATTTTCTAAATGTGGT+AGG + chr3_2:69234566-69234585 Msa0420620:intron 30.0%
CAAAATTGATATTTCAGGGA+AGG + chr3_2:69234643-69234662 Msa0420620:CDS 30.0%
!! TATGGATGATTGCTTTTATG+AGG - chr3_2:69234743-69234762 None:intergenic 30.0%
TAAAAGCAATCATCCATATC+AGG + chr3_2:69234745-69234764 Msa0420620:CDS 30.0%
TTTCATACCATAACCTGATA+TGG - chr3_2:69234761-69234780 None:intergenic 30.0%
CTCATTAATGTAGCCATAAT+GGG - chr3_2:69235013-69235032 None:intergenic 30.0%
TCTCATTAATGTAGCCATAA+TGG - chr3_2:69235014-69235033 None:intergenic 30.0%
! ATGAAATTTTACTTCCCTTC+AGG - chr3_2:69235092-69235111 None:intergenic 30.0%
!! TATGAATGAAGTTTCTAGCA+TGG + chr3_2:69235112-69235131 Msa0420620:intron 30.0%
!! TAACAAGCTTGTTTCGTTTT+AGG + chr3_2:69235347-69235366 Msa0420620:intron 30.0%
ACATGTATGGATTTGAGAAT+TGG + chr3_2:69235376-69235395 Msa0420620:CDS 30.0%
TATGGATTTGAGAATTGGAA+TGG + chr3_2:69235381-69235400 Msa0420620:CDS 30.0%
TTATAGTGGTCAATACATTC+AGG - chr3_2:69235438-69235457 None:intergenic 30.0%
! ATGTATTGACCACTATAATG+TGG + chr3_2:69235440-69235459 Msa0420620:CDS 30.0%
TCAGATATACCACATTATAG+TGG - chr3_2:69235452-69235471 None:intergenic 30.0%
GTGTAATTGTTTGTACTTGT+AGG + chr3_2:69235556-69235575 Msa0420620:intron 30.0%
! TAGGATTTGTCTTATTCCAA+GGG + chr3_2:69235575-69235594 Msa0420620:intron 30.0%
ATGATCTAAATCACAATGTG+TGG + chr3_2:69235663-69235682 Msa0420620:intron 30.0%
! TCTCCACCTCTAAAAAAAAT+TGG - chr3_2:69235783-69235802 None:intergenic 30.0%
GGTGAAAATTAGGTAAAGAA+TGG + chr3_2:69235836-69235855 Msa0420620:intron 30.0%
!! CTTTATTAGCTTTGAGACAA+TGG + chr3_2:69235909-69235928 Msa0420620:intron 30.0%
! TTCAGAATGCTCATTTTAAG+AGG + chr3_2:69236023-69236042 Msa0420620:intron 30.0%
!! TATTTTCAACCATCTGGAAT+TGG + chr3_2:69236058-69236077 Msa0420620:intron 30.0%
TAACTTCATTTCTGCTATCT+TGG + chr3_2:69236156-69236175 Msa0420620:intron 30.0%
TAAATTTCAACGTCAATGTG+AGG + chr3_2:69236589-69236608 Msa0420620:intron 30.0%
!! AATTTAGTTGAGTTGGTTTC+GGG - chr3_2:69236690-69236709 None:intergenic 30.0%
ATTCACTCCTTTCAAAACAT+TGG + chr3_2:69236714-69236733 Msa0420620:intron 30.0%
!! AAAACCACCAATGTTTTGAA+AGG - chr3_2:69236724-69236743 None:intergenic 30.0%
! TCATAAATCTAGCTCCATTT+CGG + chr3_2:69237067-69237086 Msa0420620:intron 30.0%
!!! AGAATTTTTCAAGACACATG+TGG - chr3_2:69237236-69237255 None:intergenic 30.0%
! TATATGATCATAGCCGATTT+AGG + chr3_2:69237627-69237646 Msa0420620:intron 30.0%
TTTGAACCTCTATCCTAAAT+CGG - chr3_2:69237643-69237662 None:intergenic 30.0%
! GATAGAGGTTCAAAATTTTG+AGG + chr3_2:69237649-69237668 Msa0420620:intron 30.0%
!!! AAAAGTCCAATTTTTTTCGG+GGG + chr3_2:69237708-69237727 Msa0420620:intron 30.0%
TTTAAACCCCCGAAAAAAAT+TGG - chr3_2:69237717-69237736 None:intergenic 30.0%
!!! AATTTTTTTCGGGGGTTTAA+AGG + chr3_2:69237716-69237735 Msa0420620:intron 30.0%
CAATACATCACAAACTTTGA+AGG + chr3_2:69237811-69237830 Msa0420620:intron 30.0%
! GTTTAGGTTCTTCAAAACTT+TGG - chr3_2:69237840-69237859 None:intergenic 30.0%
! TTGCAGCATCGAAAAAATTT+CGG + chr3_2:69237905-69237924 Msa0420620:intron 30.0%
CCAAAAACTCTTCAAAGTTT+GGG - chr3_2:69237931-69237950 None:intergenic 30.0%
ACCAAAAACTCTTCAAAGTT+TGG - chr3_2:69237932-69237951 None:intergenic 30.0%
!!! GAGTTTTTGGTAATTTAGTC+GGG + chr3_2:69237941-69237960 Msa0420620:intron 30.0%
ACTTTCACTATAAGATCATG+GGG + chr3_2:69238099-69238118 Msa0420620:intron 30.0%
CCAATTCACTATGATTGATA+CGG - chr3_2:69238217-69238236 None:intergenic 30.0%
CGTATCAATCATAGTGAATT+GGG + chr3_2:69238215-69238234 Msa0420620:intron 30.0%
ATCATCTTTGTATGGGAATT+TGG + chr3_2:69238393-69238412 Msa0420620:intron 30.0%
TCATCTTTGTATGGGAATTT+GGG + chr3_2:69238394-69238413 Msa0420620:intron 30.0%
GTTACACATTGCAAGATATT+AGG + chr3_2:69238505-69238524 Msa0420620:intron 30.0%
AATCAATTCATGGCTATAAG+TGG + chr3_2:69238558-69238577 Msa0420620:intron 30.0%
GTGTATGTGTATATATAGCT+AGG + chr3_2:69238732-69238751 Msa0420620:intron 30.0%
ATTGCACCTATTATGTGTAT+AGG + chr3_2:69239222-69239241 Msa0420620:intron 30.0%
TTGCACCTATTATGTGTATA+GGG + chr3_2:69239223-69239242 Msa0420620:intron 30.0%
!! TTTGTGAGCTATTTTATCGT+CGG - chr3_2:69239304-69239323 None:intergenic 30.0%
ATAATTACTCTTGGAGTCTT+TGG - chr3_2:69239394-69239413 None:intergenic 30.0%
ACATGTATGGATTTGCAAAT+TGG + chr3_2:69240026-69240045 Msa0420620:CDS 30.0%
TATGGATTTGCAAATTGGAA+TGG + chr3_2:69240031-69240050 Msa0420620:CDS 30.0%
ATGGTGTAATTGTTTGTATG+TGG + chr3_2:69240204-69240223 Msa0420620:intron 30.0%
! CCAGAAATTTTACATAGCTT+GGG + chr3_2:69240245-69240264 Msa0420620:intron 30.0%
! GTAGGATTTGTCTTATTCTA+TGG + chr3_2:69240447-69240466 Msa0420620:intron 30.0%
ATGATCTAAATCACCATTTG+TGG + chr3_2:69240536-69240555 Msa0420620:intron 30.0%
GGTTGTGGTTAAATAAAACA+AGG - chr3_2:69240573-69240592 None:intergenic 30.0%
AGTTAAATCACTAAAGGTAG+AGG - chr3_2:69240621-69240640 None:intergenic 30.0%
GAGAGTAGTTAAATCACTAA+AGG - chr3_2:69240627-69240646 None:intergenic 30.0%
AAGATGTTGTGTTGAATGTA+CGG - chr3_2:69240851-69240870 None:intergenic 30.0%
!! GAAAGTATCACTCAATTTGA+AGG - chr3_2:69240974-69240993 None:intergenic 30.0%
TAGATACATAGCATGCATTT+AGG - chr3_2:69241096-69241115 None:intergenic 30.0%
CATGATCTATATACTTCACT+TGG - chr3_2:69241162-69241181 None:intergenic 30.0%
!! AGTCATTTGAGTTGACATAT+TGG + chr3_2:69241293-69241312 Msa0420620:intron 30.0%
!! GTCATTTGAGTTGACATATT+GGG + chr3_2:69241294-69241313 Msa0420620:intron 30.0%
ATTCTGCATAAGACATAACA+TGG - chr3_2:69241460-69241479 None:intergenic 30.0%
GGTTTAGAAACTTCATTTGC+AGG + chr3_2:69234457-69234476 Msa0420620:CDS 35.0%
TGCCTACCACATTTAGAAAA+TGG - chr3_2:69234571-69234590 None:intergenic 35.0%
! TTTTCTAAATGTGGTAGGCA+TGG + chr3_2:69234571-69234590 Msa0420620:intron 35.0%
! TGCGTAAAATGCTTTTCTGT+TGG + chr3_2:69234704-69234723 Msa0420620:CDS 35.0%
CAATCATCCATATCAGGTTA+TGG + chr3_2:69234751-69234770 Msa0420620:CDS 35.0%
ATATTGTGCAGTATCGCATT+AGG + chr3_2:69234812-69234831 Msa0420620:intron 35.0%
! TGAGGTTTGTGATTTGAGTT+TGG + chr3_2:69235246-69235265 Msa0420620:intron 35.0%
CTCAAATCCATACATGTCAA+GGG - chr3_2:69235373-69235392 None:intergenic 35.0%
TCTCAAATCCATACATGTCA+AGG - chr3_2:69235374-69235393 None:intergenic 35.0%
TCAAATAGACTTACAGGAAG+AGG - chr3_2:69235489-69235508 None:intergenic 35.0%
! GTAGGATTTGTCTTATTCCA+AGG + chr3_2:69235574-69235593 Msa0420620:intron 35.0%
CAACCTTTATCCCACTATTT+GGG + chr3_2:69235733-69235752 Msa0420620:intron 35.0%
AACCTTTATCCCACTATTTG+GGG + chr3_2:69235734-69235753 Msa0420620:intron 35.0%
!! TATTAGCTTTGAGACAATGG+TGG + chr3_2:69235912-69235931 Msa0420620:intron 35.0%
!! ATTAGCTTTGAGACAATGGT+GGG + chr3_2:69235913-69235932 Msa0420620:intron 35.0%
!! GAATGCTCATTTTAAGAGGA+AGG + chr3_2:69236027-69236046 Msa0420620:intron 35.0%
ATTGGACCCATAAATCAGAA+TGG + chr3_2:69236076-69236095 Msa0420620:intron 35.0%
CATCCACCATTCTGATTTAT+GGG - chr3_2:69236085-69236104 None:intergenic 35.0%
ACATCCACCATTCTGATTTA+TGG - chr3_2:69236086-69236105 None:intergenic 35.0%
AGCAGAAATGAAGTTACAGT+AGG - chr3_2:69236152-69236171 None:intergenic 35.0%
AAGGCGAGAGAAAAAAAATG+AGG - chr3_2:69236491-69236510 None:intergenic 35.0%
!! ATTTAGTTGAGTTGGTTTCG+GGG - chr3_2:69236689-69236708 None:intergenic 35.0%
GAAAAGTCGCACACATATTT+AGG - chr3_2:69236943-69236962 None:intergenic 35.0%
GATATAACATTGCTCCGAAA+TGG - chr3_2:69237084-69237103 None:intergenic 35.0%
TGTGACTGAAAAATAGGTAG+TGG + chr3_2:69237183-69237202 Msa0420620:intron 35.0%
AGAGAACGGGTAATATAAAG+AGG + chr3_2:69237589-69237608 Msa0420620:intron 35.0%
!! CCCAAACTTTGAAGAGTTTT+TGG + chr3_2:69237928-69237947 Msa0420620:intron 35.0%
ATACTGCTGATGCAAATGAA+AGG - chr3_2:69238126-69238145 None:intergenic 35.0%
ATGTAGAACTACACCAAGAA+AGG - chr3_2:69238169-69238188 None:intergenic 35.0%
CCGTATCAATCATAGTGAAT+TGG + chr3_2:69238214-69238233 Msa0420620:intron 35.0%
! ATGCTTCTCAACTTTAGAAG+TGG + chr3_2:69238250-69238269 Msa0420620:intron 35.0%
ACAAAGATGATCCACAGTAT+TGG - chr3_2:69238384-69238403 None:intergenic 35.0%
TACTGTGGATCATCTTTGTA+TGG + chr3_2:69238385-69238404 Msa0420620:intron 35.0%
ACTGTGGATCATCTTTGTAT+GGG + chr3_2:69238386-69238405 Msa0420620:intron 35.0%
!! TGTTCATGAAGAAGTGTTTG+AGG + chr3_2:69238453-69238472 Msa0420620:intron 35.0%
!!! TGTTTGAGGTTTTGAAGTCT+TGG + chr3_2:69238467-69238486 Msa0420620:intron 35.0%
TTGAAGTCTTGGATAGAACT+TGG + chr3_2:69238478-69238497 Msa0420620:intron 35.0%
ATTCTCTGTCTGAATACTCT+CGG + chr3_2:69238648-69238667 Msa0420620:intron 35.0%
TCATCCTTTCTTTCGTGTAT+AGG + chr3_2:69238842-69238861 Msa0420620:intron 35.0%
CAATCCTATACACGAAAGAA+AGG - chr3_2:69238849-69238868 None:intergenic 35.0%
TTGACCTGTACACTTAGAAT+TGG + chr3_2:69238920-69238939 Msa0420620:intron 35.0%
!!! GGGACAACTTTTTAAGTTGA+AGG + chr3_2:69239164-69239183 Msa0420620:intron 35.0%
TCCACAATAGGTCCTTAAAA+GGG + chr3_2:69239193-69239212 Msa0420620:intron 35.0%
GTTGTCCCTATACACATAAT+AGG - chr3_2:69239231-69239250 None:intergenic 35.0%
!!! ATTTTTTTTCTAGAGAGCGC+TGG - chr3_2:69239273-69239292 None:intergenic 35.0%
TATCAAATGCGCCGTTATAA+TGG - chr3_2:69239779-69239798 None:intergenic 35.0%
TGCAAATCCATACATGTCAA+GGG - chr3_2:69240023-69240042 None:intergenic 35.0%
TTGCAAATCCATACATGTCA+AGG - chr3_2:69240024-69240043 None:intergenic 35.0%
AAAAGCGAATCTCAGTGTAT+TGG + chr3_2:69240076-69240095 Msa0420620:CDS 35.0%
GCAACATGTGTTTGAATTCA+TGG + chr3_2:69240185-69240204 Msa0420620:intron 35.0%
AATTGTTTGTATGTGGACGT+AGG + chr3_2:69240211-69240230 Msa0420620:intron 35.0%
! GCCAGAAATTTTACATAGCT+TGG + chr3_2:69240244-69240263 Msa0420620:intron 35.0%
CCCAAGCTATGTAAAATTTC+TGG - chr3_2:69240248-69240267 None:intergenic 35.0%
TTCTATGGGAAAGAACAAAG+AGG + chr3_2:69240462-69240481 Msa0420620:intron 35.0%
GAAGACCTTGAAAATCTACA+AGG - chr3_2:69240599-69240618 None:intergenic 35.0%
!! TAGAGAAGATGATGGAAAGT+AGG - chr3_2:69240716-69240735 None:intergenic 35.0%
ATTTCTAATCATATCTCGCC+TGG + chr3_2:69240820-69240839 Msa0420620:intron 35.0%
TAAGACTGTAAATGTTGAGC+GGG - chr3_2:69240930-69240949 None:intergenic 35.0%
GTAAGACTGTAAATGTTGAG+CGG - chr3_2:69240931-69240950 None:intergenic 35.0%
ATGCATGCTATGTATCTAAG+AGG + chr3_2:69241098-69241117 Msa0420620:intron 35.0%
ATGTATCTAAGAGGTTGTGT+TGG + chr3_2:69241107-69241126 Msa0420620:intron 35.0%
AAGATGTATTCACCAAGTCT+TGG - chr3_2:69241259-69241278 None:intergenic 35.0%
!!! TTTTGTACTCACCGATTTGT+TGG + chr3_2:69241406-69241425 Msa0420620:intron 35.0%
AATTCCGTCAACCTTTGTAG+TGG - chr3_2:69234213-69234232 None:intergenic 40.0%
! AAAGGCTGCTTTAAATGCTG+AGG + chr3_2:69234435-69234454 Msa0420620:CDS 40.0%
! AAGGCTGCTTTAAATGCTGA+GGG + chr3_2:69234436-69234455 Msa0420620:CDS 40.0%
CACTTTCAGCATAACCTGAA+GGG + chr3_2:69235075-69235094 Msa0420620:intron 40.0%
TGAAGAGAGGTTACTTCTTG+AGG + chr3_2:69235228-69235247 Msa0420620:CDS 40.0%
! TTTTAGGCCCTTGACATGTA+TGG + chr3_2:69235363-69235382 Msa0420620:intron 40.0%
GCGTTGTCAAATAGACTTAC+AGG - chr3_2:69235495-69235514 None:intergenic 40.0%
TACACCAAGCATTCAAACAG+AGG - chr3_2:69235541-69235560 None:intergenic 40.0%
TTGCTCTTTGTTCTTTCCCT+TGG - chr3_2:69235594-69235613 None:intergenic 40.0%
AAGCGAGATCAACTCAAGAA+AGG + chr3_2:69235629-69235648 Msa0420620:CDS 40.0%
GCAACCTTTATCCCACTATT+TGG + chr3_2:69235732-69235751 Msa0420620:intron 40.0%
! AACCCCAAATAGTGGGATAA+AGG - chr3_2:69235739-69235758 None:intergenic 40.0%
TGTAGCAAACCCCAAATAGT+GGG - chr3_2:69235746-69235765 None:intergenic 40.0%
ATGTAGCAAACCCCAAATAG+TGG - chr3_2:69235747-69235766 None:intergenic 40.0%
!! ACTATTTGGGGTTTGCTACA+TGG + chr3_2:69235746-69235765 Msa0420620:intron 40.0%
TAATGCAGGGCATAAAGCTT+TGG + chr3_2:69235994-69236013 Msa0420620:intron 40.0%
TTTATGGGTCCAATTCCAGA+TGG - chr3_2:69236070-69236089 None:intergenic 40.0%
AAATGATGTGCACACAACTG+AGG - chr3_2:69236127-69236146 None:intergenic 40.0%
AACGTCAATGTGAGGATCAT+TGG + chr3_2:69236597-69236616 Msa0420620:intron 40.0%
CATAGAGCCATTCTTTGACT+CGG + chr3_2:69236658-69236677 Msa0420620:intron 40.0%
! GGTTTTTCCGAGTCAAAGAA+TGG - chr3_2:69236668-69236687 None:intergenic 40.0%
CACTCCTTTCAAAACATTGG+TGG + chr3_2:69236717-69236736 Msa0420620:intron 40.0%
GGCAAATAGTGCATTGTGAT+TGG - chr3_2:69237149-69237168 None:intergenic 40.0%
GCACTATTTGCCACAATTCA+AGG + chr3_2:69237157-69237176 Msa0420620:intron 40.0%
CTATTTGCCACAATTCAAGG+AGG + chr3_2:69237160-69237179 Msa0420620:intron 40.0%
! AGGAGGTGTGACTGAAAAAT+AGG + chr3_2:69237177-69237196 Msa0420620:intron 40.0%
GTCTCAAATGCATGAGAGAA+CGG + chr3_2:69237575-69237594 Msa0420620:intron 40.0%
TCTCAAATGCATGAGAGAAC+GGG + chr3_2:69237576-69237595 Msa0420620:intron 40.0%
! TCATAGCCGATTTAGGATAG+AGG + chr3_2:69237634-69237653 Msa0420620:intron 40.0%
TTGCATCAGCAGTATCTTCT+TGG + chr3_2:69238131-69238150 Msa0420620:intron 40.0%
GTATCTTCTTGGCACTAATG+TGG + chr3_2:69238142-69238161 Msa0420620:intron 40.0%
! GATGTTTGAGTTAAGCAGCA+TGG - chr3_2:69238289-69238308 None:intergenic 40.0%
!! AGATGATCCACAGTATTGGT+GGG - chr3_2:69238380-69238399 None:intergenic 40.0%
! AAGATGATCCACAGTATTGG+TGG - chr3_2:69238381-69238400 None:intergenic 40.0%
CACATTGCAAGATATTAGGG+AGG + chr3_2:69238509-69238528 Msa0420620:intron 40.0%
AGGGAGGAAGAGAAATTTGA+TGG + chr3_2:69238525-69238544 Msa0420620:intron 40.0%
!! TTTGGTGTTAACGAGTCTGT+TGG - chr3_2:69238769-69238788 None:intergenic 40.0%
TCTGTTACGTACGAGAATTG+GGG - chr3_2:69238892-69238911 None:intergenic 40.0%
GTCTGTTACGTACGAGAATT+GGG - chr3_2:69238893-69238912 None:intergenic 40.0%
AGTCTGTTACGTACGAGAAT+TGG - chr3_2:69238894-69238913 None:intergenic 40.0%
GCTTCCAATTCTAAGTGTAC+AGG - chr3_2:69238927-69238946 None:intergenic 40.0%
TTAAGGACCTATTGTGGAGT+AGG - chr3_2:69239191-69239210 None:intergenic 40.0%
CTCCACAATAGGTCCTTAAA+AGG + chr3_2:69239192-69239211 Msa0420620:intron 40.0%
!! ACCCTTTTAAGGACCTATTG+TGG - chr3_2:69239197-69239216 None:intergenic 40.0%
! GAGTCTTTGGAGAATGTCTT+TGG - chr3_2:69239381-69239400 None:intergenic 40.0%
TGAGGTTTGTGGTTTGAGTA+TGG + chr3_2:69239892-69239911 Msa0420620:intron 40.0%
GAGGTTTGTGGTTTGAGTAT+GGG + chr3_2:69239893-69239912 Msa0420620:intron 40.0%
! TTTTAGGCCCTTGACATGTA+TGG + chr3_2:69235363-69235382 Msa0420620:intron 40.0%
!! AATGGTGTTGCTGAACATGT+TGG + chr3_2:69240049-69240068 Msa0420620:CDS 40.0%
!! ATGGTGTTGCTGAACATGTT+GGG + chr3_2:69240050-69240069 Msa0420620:CDS 40.0%
CTTACAGGTAGAGGAAAAGA+TGG - chr3_2:69240130-69240149 None:intergenic 40.0%
! CATCTTTTCCTCTACCTGTA+AGG + chr3_2:69240128-69240147 Msa0420620:intron 40.0%
! TCAAATAGCCTTACAGGTAG+AGG - chr3_2:69240139-69240158 None:intergenic 40.0%
! GAGTTGTCAAATAGCCTTAC+AGG - chr3_2:69240145-69240164 None:intergenic 40.0%
AAGAAAATATCGATCGAGCC+CGG + chr3_2:69240382-69240401 Msa0420620:intron 40.0%
AAGACAAATCCTACGTCCAT+GGG - chr3_2:69240441-69240460 None:intergenic 40.0%
TAAGACAAATCCTACGTCCA+TGG - chr3_2:69240442-69240461 None:intergenic 40.0%
AAGGGAGATCAACTCAACAA+AGG + chr3_2:69240502-69240521 Msa0420620:intron 40.0%
GGATGCAAAATCTCCACAAA+TGG - chr3_2:69240552-69240571 None:intergenic 40.0%
CCTTGAAAATCTACAAGGCT+CGG - chr3_2:69240594-69240613 None:intergenic 40.0%
ATCCTTACTGTCGAATCTAC+AGG + chr3_2:69240660-69240679 Msa0420620:intron 40.0%
AAAGTAGGCTTAGGTGGTTT+GGG - chr3_2:69240701-69240720 None:intergenic 40.0%
!! AGATGATGGAAAGTAGGCTT+AGG - chr3_2:69240710-69240729 None:intergenic 40.0%
TCCATCATCTTCTCTACCAT+AGG + chr3_2:69240720-69240739 Msa0420620:intron 40.0%
ACCTATGGTAGAGAAGATGA+TGG - chr3_2:69240724-69240743 None:intergenic 40.0%
AATGATCCCATCCTCCATTT+CGG + chr3_2:69241009-69241028 Msa0420620:intron 40.0%
ACCATCAAATTCAAGCTGGA+TGG - chr3_2:69241035-69241054 None:intergenic 40.0%
GTAGACCATCAAATTCAAGC+TGG - chr3_2:69241039-69241058 None:intergenic 40.0%
GTTAATATCCCTCCAAGACT+TGG + chr3_2:69241244-69241263 Msa0420620:intron 40.0%
TGTATTCACCAAGTCTTGGA+GGG - chr3_2:69241255-69241274 None:intergenic 40.0%
ATGTATTCACCAAGTCTTGG+AGG - chr3_2:69241256-69241275 None:intergenic 40.0%
! AATACATCTTCTAGCTAGCC+TGG + chr3_2:69241269-69241288 Msa0420620:intron 40.0%
TGTCAACTCAAATGACTACC+AGG - chr3_2:69241290-69241309 None:intergenic 40.0%
GGTTCCACTACAAAGGTTGA+CGG + chr3_2:69234206-69234225 Msa0420620:intron 45.0%
GGTTGACGGAATTTCGACTT+TGG + chr3_2:69234220-69234239 Msa0420620:intron 45.0%
TAGCTGCTGCTACTGAGAAA+TGG + chr3_2:69234265-69234284 Msa0420620:intron 45.0%
AGCTGCTGCTACTGAGAAAT+GGG + chr3_2:69234266-69234285 Msa0420620:intron 45.0%
GAGAAATGGGTCACAAGAAC+AGG + chr3_2:69234279-69234298 Msa0420620:intron 45.0%
!!! ATGCTTTTCTGTTGGTGCTG+AGG + chr3_2:69234712-69234731 Msa0420620:CDS 45.0%
GCACTTTCAGCATAACCTGA+AGG + chr3_2:69235074-69235093 Msa0420620:intron 45.0%
TTCCGCTTACATGTCCAGAT+TGG + chr3_2:69235197-69235216 Msa0420620:CDS 45.0%
CTCCAATCTGGACATGTAAG+CGG - chr3_2:69235202-69235221 None:intergenic 45.0%
!! AATGGTGTTGCCGAACATGT+TGG + chr3_2:69235399-69235418 Msa0420620:CDS 45.0%
!! ATGGTGTTGCCGAACATGTT+GGG + chr3_2:69235400-69235419 Msa0420620:CDS 45.0%
! GCTTTTCGACCCAACATGTT+CGG - chr3_2:69235412-69235431 None:intergenic 45.0%
! CTTACAGGAAGAGGAGTACA+TGG - chr3_2:69235480-69235499 None:intergenic 45.0%
GCAACCTCTGTTTGAATGCT+TGG + chr3_2:69235534-69235553 Msa0420620:intron 45.0%
GGACCCATAAATCAGAATGG+TGG + chr3_2:69236079-69236098 Msa0420620:intron 45.0%
AGTCACACCTCCTTGAATTG+TGG - chr3_2:69237170-69237189 None:intergenic 45.0%
GGCGTGAATTCATACTCGAA+AGG - chr3_2:69237290-69237309 None:intergenic 45.0%
CTGGTCGTGTATATAGTGCA+TGG - chr3_2:69237391-69237410 None:intergenic 45.0%
! TTTTGACCCATGCTATCGCA+CGG + chr3_2:69237971-69237990 Msa0420620:intron 45.0%
GCACTAATGTGGTCCTTTCT+TGG + chr3_2:69238153-69238172 Msa0420620:intron 45.0%
!! GATGATCCACAGTATTGGTG+GGG - chr3_2:69238379-69238398 None:intergenic 45.0%
!! AACGAGTCTGTTGGTGTCAA+TGG - chr3_2:69238760-69238779 None:intergenic 45.0%
TGAAGGACCTACTCCACAAT+AGG + chr3_2:69239181-69239200 Msa0420620:intron 45.0%
!! TTTCTAGAGAGCGCTGGTAT+TGG - chr3_2:69239267-69239286 None:intergenic 45.0%
TTCCGCTTACATGTCCAGAT+TGG + chr3_2:69235197-69235216 Msa0420620:CDS 45.0%
CTCCAATCTGGACATGTAAG+CGG - chr3_2:69235202-69235221 None:intergenic 45.0%
TTGTATGTGGACGTAGGTAG+TGG + chr3_2:69240217-69240236 Msa0420620:intron 45.0%
!! TACGTGGGTTAATGGGCTAT+TGG + chr3_2:69240344-69240363 Msa0420620:intron 45.0%
!! ACGTGGGTTAATGGGCTATT+GGG + chr3_2:69240345-69240364 Msa0420620:intron 45.0%
!! GGTTAATGGGCTATTGGGTT+GGG + chr3_2:69240350-69240369 Msa0420620:intron 45.0%
AGAAAATATCGATCGAGCCC+GGG + chr3_2:69240383-69240402 Msa0420620:intron 45.0%
CAAAGAGGAACTCATTGCCA+TGG + chr3_2:69240477-69240496 Msa0420620:intron 45.0%
GAACTCATTGCCATGGCAAA+GGG + chr3_2:69240484-69240503 Msa0420620:intron 45.0%
! AAATCTACAAGGCTCGGTTG+TGG - chr3_2:69240588-69240607 None:intergenic 45.0%
!! CCGAGCCTTGTAGATTTTCA+AGG + chr3_2:69240591-69240610 Msa0420620:intron 45.0%
GACCTGTAGATTCGACAGTA+AGG - chr3_2:69240665-69240684 None:intergenic 45.0%
GAAAGTAGGCTTAGGTGGTT+TGG - chr3_2:69240702-69240721 None:intergenic 45.0%
TGATGGAAAGTAGGCTTAGG+TGG - chr3_2:69240707-69240726 None:intergenic 45.0%
AGAGAGAGAGAGAGAGAGTT+GGG - chr3_2:69240756-69240775 None:intergenic 45.0%
GTTGAATGTACGGTAAGACC+AGG - chr3_2:69240841-69240860 None:intergenic 45.0%
GCCATCCAGCTTGAATTTGA+TGG + chr3_2:69241031-69241050 Msa0420620:intron 45.0%
ATATTGGGCAGTTGTGTCTC+CGG + chr3_2:69241309-69241328 Msa0420620:intron 45.0%
!!! AATTTTTTTTTTTTTTTTAC+AGG + chr3_2:69235162-69235181 Msa0420620:intron 5.0%
!! AAATTTAAAAAACTTTAAAT+AGG - chr3_2:69239120-69239139 None:intergenic 5.0%
!! TAAAATAAAATAAATTAATG+TGG - chr3_2:69239810-69239829 None:intergenic 5.0%
!!! GTAAAAAATTAATTTTTTTT+GGG - chr3_2:69240327-69240346 None:intergenic 5.0%
! AAGGCTCGGTTCCACTACAA+AGG + chr3_2:69234199-69234218 Msa0420620:intron 50.0%
! TGGAGAGTGCAAAGCAACCA+AGG + chr3_2:69234240-69234259 Msa0420620:intron 50.0%
GTAGGCATGGAAGTCACTGA+TGG + chr3_2:69234584-69234603 Msa0420620:intron 50.0%
CATGGAAGTCACTGATGGCA+AGG + chr3_2:69234589-69234608 Msa0420620:CDS 50.0%
TCTTCATGCGCACTCCAATC+TGG - chr3_2:69235214-69235233 None:intergenic 50.0%
ATTGGAGTGCGCATGAAGAG+AGG + chr3_2:69235215-69235234 Msa0420620:CDS 50.0%
AAAGAGCAACTCCGTGCCAT+GGG + chr3_2:69235605-69235624 Msa0420620:CDS 50.0%
! GAGTTGATCTCGCTTTCCCA+TGG - chr3_2:69235624-69235643 None:intergenic 50.0%
TTTGACCCATGCTATCGCAC+GGG + chr3_2:69237972-69237991 Msa0420620:intron 50.0%
ATAGACCCGTGCGATAGCAT+GGG - chr3_2:69237980-69237999 None:intergenic 50.0%
AATAGACCCGTGCGATAGCA+TGG - chr3_2:69237981-69238000 None:intergenic 50.0%
GAAGTGAAGGAGAGTGACGA+TGG - chr3_2:69238340-69238359 None:intergenic 50.0%
GAGAAGCTGGGATGAAGTGA+AGG - chr3_2:69238353-69238372 None:intergenic 50.0%
TTGGTGGGGTTTGAGAAGCT+GGG - chr3_2:69238365-69238384 None:intergenic 50.0%
ATTGGTGGGGTTTGAGAAGC+TGG - chr3_2:69238366-69238385 None:intergenic 50.0%
CTCAAACCCCACCAATACTG+TGG + chr3_2:69238370-69238389 Msa0420620:intron 50.0%
CGCGTACTTCTTGAGGTTTG+TGG + chr3_2:69239881-69239900 Msa0420620:intron 50.0%
! TATGTGGACGTAGGTAGTGG+CGG + chr3_2:69240220-69240239 Msa0420620:intron 50.0%
CATGCGCGCACAAGAATTCT+TGG - chr3_2:69240285-69240304 None:intergenic 50.0%
!! GGGTTAATGGGCTATTGGGT+TGG + chr3_2:69240349-69240368 Msa0420620:intron 50.0%
ACAAATCCTACGTCCATGGG+CGG - chr3_2:69240438-69240457 None:intergenic 50.0%
GGAACTCATTGCCATGGCAA+AGG + chr3_2:69240483-69240502 Msa0420620:intron 50.0%
! GAGTTGATCTCCCTTTGCCA+TGG - chr3_2:69240497-69240516 None:intergenic 50.0%
GTTGGGGTATGTAGCACCTA+TGG - chr3_2:69240739-69240758 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGTTG+GGG - chr3_2:69240755-69240774 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGT+TGG - chr3_2:69240757-69240776 None:intergenic 50.0%
ATGTTGAGCGGGACAAGTGT+TGG - chr3_2:69240919-69240938 None:intergenic 50.0%
TTCAAGCTGGATGGCCGAAA+TGG - chr3_2:69241026-69241045 None:intergenic 50.0%
CAGTAGCAGCAGCTAAGCCT+TGG - chr3_2:69234260-69234279 None:intergenic 55.0%
CAAAGAGCAACTCCGTGCCA+TGG + chr3_2:69235604-69235623 Msa0420620:CDS 55.0%
GATCTCGCTTTCCCATGGCA+CGG - chr3_2:69235619-69235638 None:intergenic 55.0%
GAAGTACGCGCACTCCAATC+TGG - chr3_2:69239871-69239890 None:intergenic 55.0%
TGGAGTGCGCGTACTTCTTG+AGG + chr3_2:69239874-69239893 Msa0420620:intron 55.0%
GGATGGCCGAAATGGAGGAT+GGG - chr3_2:69241018-69241037 None:intergenic 55.0%
TGGATGGCCGAAATGGAGGA+TGG - chr3_2:69241019-69241038 None:intergenic 55.0%
AAGCTGGATGGCCGAAATGG+AGG - chr3_2:69241023-69241042 None:intergenic 55.0%
ATCGAGCCCGGGCGAGTGTC+CGG + chr3_2:69240394-69240413 Msa0420620:intron 70.0%
GTGGCTCCGCCCATGGACGT+AGG + chr3_2:69240429-69240448 Msa0420620:intron 70.0%
TCGAGCCCGGGCGAGTGTCC+GGG + chr3_2:69240395-69240414 Msa0420620:intron 75.0%
CCATGGGCGGAGCCACCAGC+CGG - chr3_2:69240425-69240444 None:intergenic 75.0%
! GCGAGCCCGGACACTCGCCC+GGG - chr3_2:69240403-69240422 None:intergenic 80.0%
! GGCGAGCCCGGACACTCGCC+CGG - chr3_2:69240404-69240423 None:intergenic 80.0%
! GGGCGAGTGTCCGGGCTCGC+CGG + chr3_2:69240403-69240422 Msa0420620:intron 80.0%
! GAGTGTCCGGGCTCGCCGGC+TGG + chr3_2:69240407-69240426 Msa0420620:intron 80.0%
!! TGTCCGGGCTCGCCGGCTGG+TGG + chr3_2:69240410-69240429 Msa0420620:intron 80.0%
! GAGCCACCAGCCGGCGAGCC+CGG - chr3_2:69240416-69240435 None:intergenic 80.0%
! CCGGCTGGTGGCTCCGCCCA+TGG + chr3_2:69240422-69240441 Msa0420620:intron 80.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 69234073 69241500 69234073 ID=Msa0420620;Name=Msa0420620
chr3_2 mRNA 69234073 69241500 69234073 ID=Msa0420620-mRNA-1;Parent=Msa0420620;Name=Msa0420620-mRNA-1;_AED=0.34;_eAED=0.46;_QI=0|0|0|0.77|0.62|0.66|9|0|247
chr3_2 exon 69234073 69234081 69234073 ID=Msa0420620-mRNA-1:exon:16442;Parent=Msa0420620-mRNA-1
chr3_2 exon 69234397 69234478 69234397 ID=Msa0420620-mRNA-1:exon:16443;Parent=Msa0420620-mRNA-1
chr3_2 exon 69234588 69234772 69234588 ID=Msa0420620-mRNA-1:exon:16444;Parent=Msa0420620-mRNA-1
chr3_2 exon 69235184 69235249 69235184 ID=Msa0420620-mRNA-1:exon:16445;Parent=Msa0420620-mRNA-1
chr3_2 exon 69235369 69235494 69235369 ID=Msa0420620-mRNA-1:exon:16446;Parent=Msa0420620-mRNA-1
chr3_2 exon 69235578 69235650 69235578 ID=Msa0420620-mRNA-1:exon:16447;Parent=Msa0420620-mRNA-1
chr3_2 exon 69239831 69239883 69239831 ID=Msa0420620-mRNA-1:exon:16448;Parent=Msa0420620-mRNA-1
chr3_2 exon 69240019 69240144 69240019 ID=Msa0420620-mRNA-1:exon:16449;Parent=Msa0420620-mRNA-1
chr3_2 exon 69241477 69241500 69241477 ID=Msa0420620-mRNA-1:exon:16450;Parent=Msa0420620-mRNA-1
chr3_2 CDS 69234073 69234081 69234073 ID=Msa0420620-mRNA-1:cds;Parent=Msa0420620-mRNA-1
chr3_2 CDS 69234397 69234478 69234397 ID=Msa0420620-mRNA-1:cds;Parent=Msa0420620-mRNA-1
chr3_2 CDS 69234588 69234772 69234588 ID=Msa0420620-mRNA-1:cds;Parent=Msa0420620-mRNA-1
chr3_2 CDS 69235184 69235249 69235184 ID=Msa0420620-mRNA-1:cds;Parent=Msa0420620-mRNA-1
chr3_2 CDS 69235369 69235494 69235369 ID=Msa0420620-mRNA-1:cds;Parent=Msa0420620-mRNA-1
chr3_2 CDS 69235578 69235650 69235578 ID=Msa0420620-mRNA-1:cds;Parent=Msa0420620-mRNA-1
chr3_2 CDS 69239831 69239883 69239831 ID=Msa0420620-mRNA-1:cds;Parent=Msa0420620-mRNA-1
chr3_2 CDS 69240019 69240144 69240019 ID=Msa0420620-mRNA-1:cds;Parent=Msa0420620-mRNA-1
chr3_2 CDS 69241477 69241500 69241477 ID=Msa0420620-mRNA-1:cds;Parent=Msa0420620-mRNA-1
Gene Sequence

>Msa0420620

ATGTATAAAATCCAAGAAAAAAAGTGCTGCTTTTGGATCCAAGAAAAAAAGGCTGCTTTAAATGCTGAGGGTTTAGAAACTTCATTTGCAGGCATGGAAGTCACTGATGGCAAGGTATCATTATATCAGTGCAAATGCAAATACTGCAAAATTGATATTTCAGGGAAGGCACGTATCAAATGCGCTGTGTGTCAAGATTTCAATCTTTGCGTAAAATGCTTTTCTGTTGGTGCTGAGGTGAAACCTCATAAAAGCAATCATCCATATCAGGTTATGGAAGATCTTTCTTTTCCGCTTACATGTCCAGATTGGAGTGCGCATGAAGAGAGGTTACTTCTTGAGGCCCTTGACATGTATGGATTTGAGAATTGGAATGGTGTTGCCGAACATGTTGGGTCGAAAAGCAAACCTGAATGTATTGACCACTATAATGTGGTATATCTGAATTCGCCATGTACTCCTCTTCCTGATTTGTCTTATTCCAAGGGAAAGAACAAAGAGCAACTCCGTGCCATGGGAAAGCGAGATCAACTCAAGAAAGTTTTTTACAGGAAGATCTATCTTTTCCGCTTACATGTCCAGATTGGAGTGCGCGCCCTTGACATGTATGGATTTGCAAATTGGAATGGTGTTGCTGAACATGTTGGGACAAAAAGCGAATCTCAGTGTATTGGCCACTATAATGATGTATATCTGAATTCGCCATCTTTTCCTCTACCTAATTTCCTCCAAATGCAGAGCTGA

Protein sequence

>Msa0420620

MYKIQEKKCCFWIQEKKAALNAEGLETSFAGMEVTDGKVSLYQCKCKYCKIDISGKARIKCAVCQDFNLCVKCFSVGAEVKPHKSNHPYQVMEDLSFPLTCPDWSAHEERLLLEALDMYGFENWNGVAEHVGSKSKPECIDHYNVVYLNSPCTPLPDLSYSKGKNKEQLRAMGKRDQLKKVFYRKIYLFRLHVQIGVRALDMYGFANWNGVAEHVGTKSESQCIGHYNDVYLNSPSFPLPNFLQMQS*