Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421620 | XP_024633575.1 | 70.866 | 254 | 58 | 3 | 1 | 243 | 1 | 249 | 2.41e-102 | 311 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421620 | G7JBB9 | 76.378 | 254 | 20 | 3 | 1 | 243 | 1 | 225 | 1.36e-96 | 295 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0421620 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421620 | MtrunA17_Chr3g0122071 | 73.622 | 254 | 20 | 2 | 1 | 243 | 1 | 218 | 4.39e-95 | 281 |
| Msa0421620 | MtrunA17_Chr4g0064011 | 55.061 | 247 | 85 | 10 | 1 | 243 | 1 | 225 | 2.57e-65 | 206 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421620 | AT5G22990.1 | 53.012 | 83 | 39 | 0 | 138 | 220 | 232 | 314 | 4.81e-21 | 92.4 |
| Msa0421620 | AT2G15740.1 | 51.389 | 72 | 34 | 1 | 124 | 195 | 216 | 286 | 3.32e-17 | 81.6 |
| Msa0421620 | AT2G18490.1 | 53.521 | 71 | 32 | 1 | 127 | 197 | 144 | 213 | 9.98e-17 | 79.0 |
| Msa0421620 | AT2G18490.2 | 53.521 | 71 | 32 | 1 | 127 | 197 | 194 | 263 | 1.24e-16 | 79.7 |
| Msa0421620 | AT5G42640.1 | 52.113 | 71 | 29 | 2 | 131 | 197 | 218 | 287 | 1.80e-15 | 76.3 |
Find 58 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTGGCTCGTCGCTGTTTC+AGG | 0.099782 | 3_2:-70644292 | Msa0421620:CDS |
| ATCATTAATATTGATATTAA+TGG | 0.169892 | 3_2:+70646548 | None:intergenic |
| CTTCAGATCTGTTCGGGTTT+GGG | 0.188808 | 3_2:-70644478 | Msa0421620:CDS |
| CCTTCAGATCTGTTCGGGTT+TGG | 0.255644 | 3_2:-70644479 | Msa0421620:CDS |
| TTAGTTGGTACCAATAATTT+TGG | 0.263753 | 3_2:-70646660 | Msa0421620:CDS |
| GTGAGTTTCGCTGGAGGTTC+GGG | 0.267083 | 3_2:-70644396 | Msa0421620:CDS |
| AGCATGACTTCCAAAATTAT+TGG | 0.299809 | 3_2:+70646650 | None:intergenic |
| TGGAGGTTCGGGGTTTGTTT+TGG | 0.305281 | 3_2:-70644385 | Msa0421620:CDS |
| TTGGGGTTGATGGAGAGATA+TGG | 0.310414 | 3_2:-70644460 | Msa0421620:CDS |
| CGTGAGTTTCGCTGGAGGTT+CGG | 0.320759 | 3_2:-70644397 | Msa0421620:CDS |
| CTTTGTCCTTCAGATCTGTT+CGG | 0.325476 | 3_2:-70644485 | Msa0421620:CDS |
| AGCCTACCTCACAAGAAATA+TGG | 0.344617 | 3_2:-70646294 | Msa0421620:CDS |
| TGGGGTTGATGGAGAGATAT+GGG | 0.348975 | 3_2:-70644459 | Msa0421620:CDS |
| TTTGTCCTTCAGATCTGTTC+GGG | 0.349770 | 3_2:-70644484 | Msa0421620:CDS |
| GAGATTCTTGAAGCTCAGTT+TGG | 0.350712 | 3_2:-70646606 | Msa0421620:CDS |
| CTGTTCGGGTTTGGGGTTGA+TGG | 0.351684 | 3_2:-70644470 | Msa0421620:CDS |
| CACTGGTTCGTGAGTTTCGC+TGG | 0.365847 | 3_2:-70644405 | Msa0421620:CDS |
| AATATTTCTGTTGTTGATGT+TGG | 0.374776 | 3_2:-70646393 | Msa0421620:CDS |
| ATTTCTTGTGAGGTAGGCTA+TGG | 0.375103 | 3_2:+70646298 | None:intergenic |
| ATATTTCTGTTGTTGATGTT+GGG | 0.376538 | 3_2:-70646392 | Msa0421620:CDS |
| ACAATAATAGATTGTTTCAA+TGG | 0.400008 | 3_2:-70646716 | Msa0421620:CDS |
| ATCTGAAGGACAAAGAAAAC+CGG | 0.412836 | 3_2:+70644493 | None:intergenic |
| GGTGGCTCGTCGCTGTTTCA+GGG | 0.430026 | 3_2:-70644291 | Msa0421620:CDS |
| TTATCAGCACAAGCAATAAC+AGG | 0.430056 | 3_2:+70646087 | None:intergenic |
| ACTCATTCATCATCATTAGT+TGG | 0.437802 | 3_2:-70646675 | Msa0421620:CDS |
| GTGGTGGTTTGCAGATTTCA+AGG | 0.438380 | 3_2:-70644315 | Msa0421620:CDS |
| AGATTCTTGAAGCTCAGTTT+GGG | 0.438887 | 3_2:-70646605 | Msa0421620:CDS |
| CTTCGCGGCCGGTGTTTCCC+CGG | 0.447931 | 3_2:-70644512 | Msa0421620:CDS |
| GTTTGCAGATTTCAAGGTGG+TGG | 0.454658 | 3_2:-70644309 | Msa0421620:CDS |
| TGTTTGTGTGTGTGCAGCAC+TGG | 0.468715 | 3_2:-70644422 | Msa0421620:CDS |
| TTCAGATCTGTTCGGGTTTG+GGG | 0.471420 | 3_2:-70644477 | Msa0421620:CDS |
| AGCAATGAAAATATTGATGA+TGG | 0.472887 | 3_2:-70646327 | Msa0421620:CDS |
| GCGACAAGCCTCTTCGCGGC+CGG | 0.488316 | 3_2:-70644523 | Msa0421620:CDS |
| AAAGAAAACCGGGGAAACAC+CGG | 0.491661 | 3_2:+70644504 | None:intergenic |
| TCTCATCTTGATCTCCGTGT+AGG | 0.496262 | 3_2:-70646456 | Msa0421620:CDS |
| TATTTCTGTTGTTGATGTTG+GGG | 0.503647 | 3_2:-70646391 | Msa0421620:CDS |
| TTTCTTGTGAGGTAGGCTAT+GGG | 0.526908 | 3_2:+70646299 | None:intergenic |
| TGGTGCGACAAGCCTCTTCG+CGG | 0.535210 | 3_2:-70644527 | Msa0421620:CDS |
| AGATTGTTTCAATGGATGCA+TGG | 0.544477 | 3_2:-70646708 | Msa0421620:CDS |
| TATGGTCCATATTTCTTGTG+AGG | 0.545765 | 3_2:+70646288 | None:intergenic |
| GAAATATTAATCATTTGAGA+AGG | 0.555913 | 3_2:+70646408 | None:intergenic |
| CTCTCACCCCTCTTCCAAGT+GGG | 0.558684 | 3_2:-70646023 | Msa0421620:CDS |
| GTCCATATTTCTTGTGAGGT+AGG | 0.562593 | 3_2:+70646292 | None:intergenic |
| ATGTTAACAAGAACGATATG+AGG | 0.578456 | 3_2:-70646368 | Msa0421620:CDS |
| GCTCTCACCCCTCTTCCAAG+TGG | 0.584935 | 3_2:-70646024 | Msa0421620:CDS |
| TCTGAAGGACAAAGAAAACC+GGG | 0.588995 | 3_2:+70644494 | None:intergenic |
| CAGATTCAAAAGCTCAATGA+CGG | 0.593887 | 3_2:-70646126 | Msa0421620:CDS |
| GGGAAACACCGGCCGCGAAG+AGG | 0.595447 | 3_2:+70644515 | None:intergenic |
| AATGTAATCTCTAGCGATGG+TGG | 0.605580 | 3_2:-70644547 | Msa0421620:intron |
| TGGTTCGTGAGTTTCGCTGG+AGG | 0.611790 | 3_2:-70644402 | Msa0421620:CDS |
| CCAAACCCGAACAGATCTGA+AGG | 0.613214 | 3_2:+70644479 | None:intergenic |
| TCCGGGAATCCTAAAAGCGA+TGG | 0.625731 | 3_2:-70646628 | Msa0421620:CDS |
| GTGGTTTGCAGATTTCAAGG+TGG | 0.645391 | 3_2:-70644312 | Msa0421620:CDS |
| TGAGTTTCGCTGGAGGTTCG+GGG | 0.646896 | 3_2:-70644395 | Msa0421620:CDS |
| GGCTCGTCGCTGTTTCAGGG+TGG | 0.711268 | 3_2:-70644288 | Msa0421620:CDS |
| CTGAAGGACAAAGAAAACCG+GGG | 0.726228 | 3_2:+70644495 | None:intergenic |
| ATTGTGATGATAAGCCTACA+CGG | 0.769789 | 3_2:+70646442 | None:intergenic |
| ATGATGATGAATGAGTTGTG+TGG | 0.806690 | 3_2:+70646682 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCATTAATATTGATATTAA+TGG | + | chr3_2:70644460-70644479 | None:intergenic | 10.0% |
| !! | AAATTAAACACTAAATTAAA+AGG | + | chr3_2:70645151-70645170 | None:intergenic | 10.0% |
| !! | TGAAAAAAATGAAAATTTAT+TGG | + | chr3_2:70646171-70646190 | None:intergenic | 10.0% |
| !! | AGATAACATATTAAATTTAT+TGG | + | chr3_2:70646208-70646227 | None:intergenic | 10.0% |
| !!! | ATTTTAGAACAAATTTTTCT+TGG | + | chr3_2:70645978-70645997 | None:intergenic | 15.0% |
| !! | AAAAAATGAAAATTTATTGG+TGG | + | chr3_2:70646168-70646187 | None:intergenic | 15.0% |
| !! | ACAATAATAGATTGTTTCAA+TGG | - | chr3_2:70644289-70644308 | Msa0421620:CDS | 20.0% |
| !! | GAAATATTAATCATTTGAGA+AGG | + | chr3_2:70644600-70644619 | None:intergenic | 20.0% |
| !!! | TTTTAAAGAAATTAGTCTCA+GGG | + | chr3_2:70645227-70645246 | None:intergenic | 20.0% |
| !! | TTGAAATTAACAAATGTGTT+TGG | - | chr3_2:70645335-70645354 | Msa0421620:intron | 20.0% |
| !! | ATATATTCTCAAGAAGAATT+TGG | + | chr3_2:70645470-70645489 | None:intergenic | 20.0% |
| !!! | TATCCAAACAATTGAATTTT+AGG | - | chr3_2:70645487-70645506 | Msa0421620:intron | 20.0% |
| !! | ATTCCTAAAATTCAATTGTT+TGG | + | chr3_2:70645493-70645512 | None:intergenic | 20.0% |
| !! | TGAACAAACAATGAAATAAA+AGG | - | chr3_2:70645528-70645547 | Msa0421620:intron | 20.0% |
| !! | AGTTTAAATCTCATAAGATA+CGG | + | chr3_2:70645798-70645817 | None:intergenic | 20.0% |
| !! | AACATAACATTGTAAGTTAA+AGG | + | chr3_2:70645826-70645845 | None:intergenic | 20.0% |
| !!! | TTCTAAAATGACACTTAAAA+AGG | + | chr3_2:70646080-70646099 | None:intergenic | 20.0% |
| !!! | AAAAATACATTTCGCTATTT+TGG | + | chr3_2:70646111-70646130 | None:intergenic | 20.0% |
| !!! | GATTAAAATAAGGGTATAAT+AGG | + | chr3_2:70646146-70646165 | None:intergenic | 20.0% |
| !!! | TTATTGGTGGATTAAAATAA+GGG | + | chr3_2:70646155-70646174 | None:intergenic | 20.0% |
| !!! | TTTATTGGTGGATTAAAATA+AGG | + | chr3_2:70646156-70646175 | None:intergenic | 20.0% |
| !! | GCAAAAAAAAAAGAATTTGT+TGG | + | chr3_2:70646270-70646289 | None:intergenic | 20.0% |
| !!! | TTAGTTGGTACCAATAATTT+TGG | - | chr3_2:70644345-70644364 | Msa0421620:CDS | 25.0% |
| !! | AATATTTCTGTTGTTGATGT+TGG | - | chr3_2:70644612-70644631 | Msa0421620:intron | 25.0% |
| !! | ATATTTCTGTTGTTGATGTT+GGG | - | chr3_2:70644613-70644632 | Msa0421620:intron | 25.0% |
| ! | AGCAATGAAAATATTGATGA+TGG | - | chr3_2:70644678-70644697 | Msa0421620:intron | 25.0% |
| !! | TTTTGTTGCATTTTGAACAT+GGG | + | chr3_2:70644743-70644762 | None:intergenic | 25.0% |
| !! | ATTTTGTTGCATTTTGAACA+TGG | + | chr3_2:70644744-70644763 | None:intergenic | 25.0% |
| ! | GAAAAAAGAGATACATTTCT+AGG | - | chr3_2:70644835-70644854 | Msa0421620:intron | 25.0% |
| !!! | TTTTTCAGTACTCAATTGTT+AGG | - | chr3_2:70645110-70645129 | Msa0421620:intron | 25.0% |
| !!! | GTTTTAAAGAAATTAGTCTC+AGG | + | chr3_2:70645228-70645247 | None:intergenic | 25.0% |
| !! | AACAAATTTTTCTTGGCAAT+AGG | + | chr3_2:70645971-70645990 | None:intergenic | 25.0% |
| ! | CACTTAAAAAGGAACATAAT+TGG | + | chr3_2:70646069-70646088 | None:intergenic | 25.0% |
| ACTCATTCATCATCATTAGT+TGG | - | chr3_2:70644330-70644349 | Msa0421620:CDS | 30.0% | |
| AGCATGACTTCCAAAATTAT+TGG | + | chr3_2:70644358-70644377 | None:intergenic | 30.0% | |
| ! | TATTTCTGTTGTTGATGTTG+GGG | - | chr3_2:70644614-70644633 | Msa0421620:intron | 30.0% |
| ATGTTAACAAGAACGATATG+AGG | - | chr3_2:70644637-70644656 | Msa0421620:intron | 30.0% | |
| ! | AACTTGATTTTTATCCCACT+TGG | + | chr3_2:70644999-70645018 | None:intergenic | 30.0% |
| AAGTGGGATAAAAATCAAGT+TGG | - | chr3_2:70644998-70645017 | Msa0421620:intron | 30.0% | |
| ! | TTTGTTCACAGTACACTTTT+TGG | + | chr3_2:70645516-70645535 | None:intergenic | 30.0% |
| !!! | CTTTTTTGTGTTGTGAAACT+TGG | - | chr3_2:70645597-70645616 | Msa0421620:intron | 30.0% |
| ! | CACTTAAGGTGTTAATTCAA+TGG | + | chr3_2:70645853-70645872 | None:intergenic | 30.0% |
| GCTCAACATTATATCACTTA+AGG | + | chr3_2:70645867-70645886 | None:intergenic | 30.0% | |
| AGTGATATAATGTTGAGCTT+TGG | - | chr3_2:70645869-70645888 | Msa0421620:intron | 30.0% | |
| TGAGAAAAGAAGAAAAGATG+TGG | + | chr3_2:70646382-70646401 | None:intergenic | 30.0% | |
| AGATTGTTTCAATGGATGCA+TGG | - | chr3_2:70644297-70644316 | Msa0421620:CDS | 35.0% | |
| ! | ATGATGATGAATGAGTTGTG+TGG | + | chr3_2:70644326-70644345 | None:intergenic | 35.0% |
| !! | TAATTTTGGAAGTCATGCTC+CGG | - | chr3_2:70644359-70644378 | Msa0421620:CDS | 35.0% |
| AGATTCTTGAAGCTCAGTTT+GGG | - | chr3_2:70644400-70644419 | Msa0421620:CDS | 35.0% | |
| ATTGTGATGATAAGCCTACA+CGG | + | chr3_2:70644566-70644585 | None:intergenic | 35.0% | |
| TATGGTCCATATTTCTTGTG+AGG | + | chr3_2:70644720-70644739 | None:intergenic | 35.0% | |
| ! | TTGCATTTTGAACATGGGTA+TGG | + | chr3_2:70644738-70644757 | None:intergenic | 35.0% |
| CAGATTCAAAAGCTCAATGA+CGG | - | chr3_2:70644879-70644898 | Msa0421620:intron | 35.0% | |
| TTATCAGCACAAGCAATAAC+AGG | + | chr3_2:70644921-70644940 | None:intergenic | 35.0% | |
| ! | TTTTTATCCCACTTGGAAGA+GGG | + | chr3_2:70644992-70645011 | None:intergenic | 35.0% |
| ! | ATTTTTATCCCACTTGGAAG+AGG | + | chr3_2:70644993-70645012 | None:intergenic | 35.0% |
| ! | TAAAGAAATTAGTCTCAGGG+AGG | + | chr3_2:70645224-70645243 | None:intergenic | 35.0% |
| ! | TTCTCTCTCTAGAAAAGATC+TGG | + | chr3_2:70646334-70646353 | None:intergenic | 35.0% |
| !! | AGATCTTTTCTAGAGAGAGA+AGG | - | chr3_2:70646333-70646352 | Msa0421620:CDS | 35.0% |
| ATCTGAAGGACAAAGAAAAC+CGG | + | chr3_2:70646515-70646534 | None:intergenic | 35.0% | |
| !! | AATTTTGGAAGTCATGCTCC+GGG | - | chr3_2:70644360-70644379 | Msa0421620:CDS | 40.0% |
| !! | CAAGAATCTCCATCGCTTTT+AGG | + | chr3_2:70644389-70644408 | None:intergenic | 40.0% |
| GAGATTCTTGAAGCTCAGTT+TGG | - | chr3_2:70644399-70644418 | Msa0421620:CDS | 40.0% | |
| TTTCTTGTGAGGTAGGCTAT+GGG | + | chr3_2:70644709-70644728 | None:intergenic | 40.0% | |
| ATTTCTTGTGAGGTAGGCTA+TGG | + | chr3_2:70644710-70644729 | None:intergenic | 40.0% | |
| AGCCTACCTCACAAGAAATA+TGG | - | chr3_2:70644711-70644730 | Msa0421620:intron | 40.0% | |
| GTCCATATTTCTTGTGAGGT+AGG | + | chr3_2:70644716-70644735 | None:intergenic | 40.0% | |
| ! | AGCTTTTGAATCTGAAGACG+CGG | + | chr3_2:70644873-70644892 | None:intergenic | 40.0% |
| ! | TTTTATCCCACTTGGAAGAG+GGG | + | chr3_2:70644991-70645010 | None:intergenic | 40.0% |
| GACAACACATTTGAGAGGAT+TGG | - | chr3_2:70645439-70645458 | Msa0421620:intron | 40.0% | |
| !! | ATAGGTCAGCTATTTTGGGA+CGG | + | chr3_2:70645953-70645972 | None:intergenic | 40.0% |
| !! | GGCAATAGGTCAGCTATTTT+GGG | + | chr3_2:70645957-70645976 | None:intergenic | 40.0% |
| ! | TGGCAATAGGTCAGCTATTT+TGG | + | chr3_2:70645958-70645977 | None:intergenic | 40.0% |
| ATGGGGAAGAAAGAATAAGG+CGG | + | chr3_2:70646416-70646435 | None:intergenic | 40.0% | |
| ! | GTGATGGGGAAGAAAGAATA+AGG | + | chr3_2:70646419-70646438 | None:intergenic | 40.0% |
| AGAGATGTTTGGATGTGATG+GGG | + | chr3_2:70646433-70646452 | None:intergenic | 40.0% | |
| CAGAGATGTTTGGATGTGAT+GGG | + | chr3_2:70646434-70646453 | None:intergenic | 40.0% | |
| TACATTGGACCAGAGATGTT+TGG | + | chr3_2:70646444-70646463 | None:intergenic | 40.0% | |
| TCCAATGTAATCTCTAGCGA+TGG | - | chr3_2:70646455-70646474 | Msa0421620:CDS | 40.0% | |
| ACCATCGCTAGAGATTACAT+TGG | + | chr3_2:70646459-70646478 | None:intergenic | 40.0% | |
| AATGTAATCTCTAGCGATGG+TGG | - | chr3_2:70646458-70646477 | Msa0421620:CDS | 40.0% | |
| TCTGAAGGACAAAGAAAACC+GGG | + | chr3_2:70646514-70646533 | None:intergenic | 40.0% | |
| CTTTGTCCTTCAGATCTGTT+CGG | - | chr3_2:70646520-70646539 | Msa0421620:CDS | 40.0% | |
| TTTGTCCTTCAGATCTGTTC+GGG | - | chr3_2:70646521-70646540 | Msa0421620:CDS | 40.0% | |
| ! | GCTTGTCTTCAAGCTTTTCT+TGG | - | chr3_2:70646668-70646687 | Msa0421620:CDS | 40.0% |
| ! | TGTCTTCAAGCTTTTCTTGG+TGG | - | chr3_2:70646671-70646690 | Msa0421620:CDS | 40.0% |
| !!! | TCCATCGCTTTTAGGATTCC+CGG | + | chr3_2:70644381-70644400 | None:intergenic | 45.0% |
| TCTCATCTTGATCTCCGTGT+AGG | - | chr3_2:70644549-70644568 | Msa0421620:intron | 45.0% | |
| ! | GTGTCGACAACACATTTGAG+AGG | - | chr3_2:70645434-70645453 | Msa0421620:intron | 45.0% |
| TGTGGTTGAAGTCTAGAGAG+AGG | + | chr3_2:70646364-70646383 | None:intergenic | 45.0% | |
| CCAGAGATGTTTGGATGTGA+TGG | + | chr3_2:70646435-70646454 | None:intergenic | 45.0% | |
| CCATCACATCCAAACATCTC+TGG | - | chr3_2:70646432-70646451 | Msa0421620:CDS | 45.0% | |
| AAAGAAAACCGGGGAAACAC+CGG | + | chr3_2:70646504-70646523 | None:intergenic | 45.0% | |
| CTGAAGGACAAAGAAAACCG+GGG | + | chr3_2:70646513-70646532 | None:intergenic | 45.0% | |
| ! | CTTCAGATCTGTTCGGGTTT+GGG | - | chr3_2:70646527-70646546 | Msa0421620:CDS | 45.0% |
| ! | TTCAGATCTGTTCGGGTTTG+GGG | - | chr3_2:70646528-70646547 | Msa0421620:CDS | 45.0% |
| !! | TTGGGGTTGATGGAGAGATA+TGG | - | chr3_2:70646545-70646564 | Msa0421620:CDS | 45.0% |
| !! | TGGGGTTGATGGAGAGATAT+GGG | - | chr3_2:70646546-70646565 | Msa0421620:CDS | 45.0% |
| !!! | TTTGTTTTGGTGGTTGGCAG+CGG | - | chr3_2:70646633-70646652 | Msa0421620:CDS | 45.0% |
| ! | CTTCAAGCTTTTCTTGGTGG+TGG | - | chr3_2:70646674-70646693 | Msa0421620:CDS | 45.0% |
| ! | GTGGTGGTTTGCAGATTTCA+AGG | - | chr3_2:70646690-70646709 | Msa0421620:CDS | 45.0% |
| ! | GTGGTTTGCAGATTTCAAGG+TGG | - | chr3_2:70646693-70646712 | Msa0421620:CDS | 45.0% |
| GTTTGCAGATTTCAAGGTGG+TGG | - | chr3_2:70646696-70646715 | Msa0421620:CDS | 45.0% | |
| !! | TATTAATATTAATTATTTGA+AGG | + | chr3_2:70645026-70645045 | None:intergenic | 5.0% |
| TCCGGGAATCCTAAAAGCGA+TGG | - | chr3_2:70644377-70644396 | Msa0421620:CDS | 50.0% | |
| GGGAAGAAAGAATAAGGCGG+TGG | + | chr3_2:70646413-70646432 | None:intergenic | 50.0% | |
| CCAAACCCGAACAGATCTGA+AGG | + | chr3_2:70646529-70646548 | None:intergenic | 50.0% | |
| ! | CCTTCAGATCTGTTCGGGTT+TGG | - | chr3_2:70646526-70646545 | Msa0421620:CDS | 50.0% |
| TGTTTGTGTGTGTGCAGCAC+TGG | - | chr3_2:70646583-70646602 | Msa0421620:CDS | 50.0% | |
| !! | TGGAGGTTCGGGGTTTGTTT+TGG | - | chr3_2:70646620-70646639 | Msa0421620:CDS | 50.0% |
| !!! | AGGTTCGGGGTTTGTTTTGG+TGG | - | chr3_2:70646623-70646642 | Msa0421620:CDS | 50.0% |
| !!! | TCGGGGTTTGTTTTGGTGGT+TGG | - | chr3_2:70646627-70646646 | Msa0421620:CDS | 50.0% |
| CTCTCACCCCTCTTCCAAGT+GGG | - | chr3_2:70644982-70645001 | Msa0421620:intron | 55.0% | |
| ! | CTGTTCGGGTTTGGGGTTGA+TGG | - | chr3_2:70646535-70646554 | Msa0421620:CDS | 55.0% |
| !! | CACTGGTTCGTGAGTTTCGC+TGG | - | chr3_2:70646600-70646619 | Msa0421620:CDS | 55.0% |
| TGGTTCGTGAGTTTCGCTGG+AGG | - | chr3_2:70646603-70646622 | Msa0421620:CDS | 55.0% | |
| CGTGAGTTTCGCTGGAGGTT+CGG | - | chr3_2:70646608-70646627 | Msa0421620:CDS | 55.0% | |
| GTGAGTTTCGCTGGAGGTTC+GGG | - | chr3_2:70646609-70646628 | Msa0421620:CDS | 55.0% | |
| TGAGTTTCGCTGGAGGTTCG+GGG | - | chr3_2:70646610-70646629 | Msa0421620:CDS | 55.0% | |
| GCTCTCACCCCTCTTCCAAG+TGG | - | chr3_2:70644981-70645000 | Msa0421620:intron | 60.0% | |
| TGGTGCGACAAGCCTCTTCG+CGG | - | chr3_2:70646478-70646497 | Msa0421620:CDS | 60.0% | |
| ! | TGGTGGCTCGTCGCTGTTTC+AGG | - | chr3_2:70646713-70646732 | Msa0421620:CDS | 60.0% |
| ! | GGTGGCTCGTCGCTGTTTCA+GGG | - | chr3_2:70646714-70646733 | Msa0421620:CDS | 60.0% |
| ! | GGCTCGTCGCTGTTTCAGGG+TGG | - | chr3_2:70646717-70646736 | Msa0421620:CDS | 65.0% |
| GCGACAAGCCTCTTCGCGGC+CGG | - | chr3_2:70646482-70646501 | Msa0421620:CDS | 70.0% | |
| GGGAAACACCGGCCGCGAAG+AGG | + | chr3_2:70646493-70646512 | None:intergenic | 70.0% | |
| CTTCGCGGCCGGTGTTTCCC+CGG | - | chr3_2:70646493-70646512 | Msa0421620:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 70644285 | 70646742 | 70644285 | ID=Msa0421620;Name=Msa0421620 |
| chr3_2 | mRNA | 70644285 | 70646742 | 70644285 | ID=Msa0421620-mRNA-1;Parent=Msa0421620;Name=Msa0421620-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0|0|0.5|1|1|2|0|333 |
| chr3_2 | exon | 70646012 | 70646742 | 70646012 | ID=Msa0421620-mRNA-1:exon:17041;Parent=Msa0421620-mRNA-1 |
| chr3_2 | exon | 70644285 | 70644555 | 70644285 | ID=Msa0421620-mRNA-1:exon:17040;Parent=Msa0421620-mRNA-1 |
| chr3_2 | CDS | 70646012 | 70646742 | 70646012 | ID=Msa0421620-mRNA-1:cds;Parent=Msa0421620-mRNA-1 |
| chr3_2 | CDS | 70644285 | 70644555 | 70644285 | ID=Msa0421620-mRNA-1:cds;Parent=Msa0421620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
