AlfalfaGEDB | Msa0423340

M. sativa cultivar zhongmu-4 / Msa0423340

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0423340	AES92029.1	85.778	225	19	1	1	212	1	225	1.87e-139	399

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0423340	G7JQ00	85.778	225	19	1	1	212	1	225	8.95e-140	399

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TFs/TRs:

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Gene ID	Type	Classification
Msa0423340	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0423340	MtrunA17_Chr5g0393501	32.877	219	130	4	9	211	24	241	4.28e-36	127
Msa0423340	MtrunA17_Chr4g0044671	28.646	192	124	1	19	197	16	207	1.33e-19	83.6
Msa0423340	MtrunA17_Chr4g0034781	28.125	192	125	1	19	197	10	201	1.96e-18	80.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 49 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATATTTAGCAACGAAGAA+TGG	0.465634	3_2:-73114208	None:intergenic
AACTTTAGTGGTAAAATTTG+GGG	0.508761	3_2:-73113955	None:intergenic
AATCGTGATGTTTCACTCTA+AGG	0.341127	3_2:-73114663	None:intergenic
ACACGATGCTGCCGCACTCA+TGG	0.487735	3_2:-73114464	None:intergenic
ACAGGAATGATATTGTCATA+AGG	0.528831	3_2:-73114703	None:intergenic
ACCCTATCATTCCATGAGTG+CGG	0.640367	3_2:+73114453	Msa0423340:CDS
ACTTTAGTGGTAAAATTTGG+GGG	0.613670	3_2:-73113954	None:intergenic
AGGAATTTGCCGAAAGTATC+AGG	0.335653	3_2:-73114643	None:intergenic
AGTCGGCCGTTGTTGACAGA+TGG	0.531450	3_2:+73114307	Msa0423340:CDS
ATAGGAAGATATGCATTTAA+AGG	0.361554	3_2:+73113923	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTTTAGTGGTAAAATTTGG+GGG	-	chr3_2:73113957-73113976	None:intergenic	30.0%
TAATACACTGTCTAACTTCT+AGG	+	chr3_2:73114168-73114187	Msa0423340:intron	30.0%
TGTTCAACAAATCAGTTAGT+CGG	+	chr3_2:73114290-73114309	Msa0423340:CDS	30.0%
ACAGGAATGATATTGTCATA+AGG	-	chr3_2:73114706-73114725	None:intergenic	30.0%
ACTTTAGTGGTAAAATTTGG+GGG	-	chr3_2:73113957-73113976	None:intergenic	30.0%
TAATACACTGTCTAACTTCT+AGG	+	chr3_2:73114168-73114187	Msa0423340:intron	30.0%
TGTTCAACAAATCAGTTAGT+CGG	+	chr3_2:73114290-73114309	Msa0423340:CDS	30.0%
ACAGGAATGATATTGTCATA+AGG	-	chr3_2:73114706-73114725	None:intergenic	30.0%
CGATTATTCTACGAGTTTAG+TGG	+	chr3_2:73114343-73114362	Msa0423340:CDS	35.0%
ATTATTGCTTTCCAGTACCT+TGG	+	chr3_2:73114373-73114392	Msa0423340:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	73113933	73114882	73113933	ID=Msa0423340;Name=Msa0423340
chr3_2	mRNA	73113933	73114882	73113933	ID=Msa0423340-mRNA-1;Parent=Msa0423340;Name=Msa0423340-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0\|0\|0\|1\|1\|1\|3\|0\|212
chr3_2	exon	73113933	73114013	73113933	ID=Msa0423340-mRNA-1:exon:18185;Parent=Msa0423340-mRNA-1
chr3_2	exon	73114190	73114501	73114190	ID=Msa0423340-mRNA-1:exon:18186;Parent=Msa0423340-mRNA-1
chr3_2	exon	73114637	73114882	73114637	ID=Msa0423340-mRNA-1:exon:18187;Parent=Msa0423340-mRNA-1
chr3_2	CDS	73113933	73114013	73113933	ID=Msa0423340-mRNA-1:cds;Parent=Msa0423340-mRNA-1
chr3_2	CDS	73114190	73114501	73114190	ID=Msa0423340-mRNA-1:cds;Parent=Msa0423340-mRNA-1
chr3_2	CDS	73114637	73114882	73114637	ID=Msa0423340-mRNA-1:cds;Parent=Msa0423340-mRNA-1

Gene Sequence

>Msa0423340

ATGCATTTAAAGGTGAAGTTTCCCCCAAATTTTACCACTAAAGTTAAATTTTCGTTCTTCACAGTGCATGTAGAAAATCAGGATGTCGGAGAGCTACAACCATTCTTCGTTGCTAAATATTTCTATGAGCTGCCGGAGCAATGGCACTTGCTAGATGGTGATGGGACTACTCATAACGTCATGTTCAACAAATCAGTTAGTCGGCCGTTGTTGACAGATGGTTGGAGTGCATTGCGATTATTCTACGAGTTTAGTGGAAGTAAGATTATTGCTTTCCAGTACCTTGGTGGAAGTAGATTTCAAATCTTTGTTTTTGCTTATAACATTACTCCAGTTGATTATCCACCCTATCATTCCATGAGTGCGGCAGCATCGTGTTATTGTACCTTTGAAGAACTACCTGATACTTTCGGCAAATTCCTTAGAGTGAAACATCACGATTACGTCATGTTGTGCGGACCTTATGACAATATCATTCCTGTGAGACTCAAATATAGAGACGACCCCATACCAAATGTGATGTTCGGAAAAGGTTGGACGAGTTTTTGTGCTGCCAATGGTATTGAGGGCGGAGACGTGTTGATTTTCAAGTGCAAGTGCGTCATGGACAAAAAATATGTTATCGTATCCAAGCGTTGA

Protein sequence

>Msa0423340

MHLKVKFPPNFTTKVKFSFFTVHVENQDVGELQPFFVAKYFYELPEQWHLLDGDGTTHNVMFNKSVSRPLLTDGWSALRLFYEFSGSKIIAFQYLGGSRFQIFVFAYNITPVDYPPYHSMSAAASCYCTFEELPDTFGKFLRVKHHDYVMLCGPYDNIIPVRLKYRDDPIPNVMFGKGWTSFCAANGIEGGDVLIFKCKCVMDKKYVIVSKR*