Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0423340 | AES92029.1 | 85.778 | 225 | 19 | 1 | 1 | 212 | 1 | 225 | 1.87e-139 | 399 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0423340 | G7JQ00 | 85.778 | 225 | 19 | 1 | 1 | 212 | 1 | 225 | 8.95e-140 | 399 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0423340 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0423340 | MtrunA17_Chr5g0393501 | 32.877 | 219 | 130 | 4 | 9 | 211 | 24 | 241 | 4.28e-36 | 127 |
| Msa0423340 | MtrunA17_Chr4g0044671 | 28.646 | 192 | 124 | 1 | 19 | 197 | 16 | 207 | 1.33e-19 | 83.6 |
| Msa0423340 | MtrunA17_Chr4g0034781 | 28.125 | 192 | 125 | 1 | 19 | 197 | 10 | 201 | 1.96e-18 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 49 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAACTTTAGTGGTAAAATT+TGG | 0.129588 | 3_2:-73113957 | None:intergenic |
| TAACTTTAGTGGTAAAATTT+GGG | 0.209625 | 3_2:-73113956 | None:intergenic |
| GAACGAAAATTTAACTTTAG+TGG | 0.297412 | 3_2:-73113967 | None:intergenic |
| CACAGTGCATGTAGAAAATC+AGG | 0.323162 | 3_2:+73113992 | Msa0423340:CDS |
| AGGAATTTGCCGAAAGTATC+AGG | 0.335653 | 3_2:-73114643 | None:intergenic |
| AATCGTGATGTTTCACTCTA+AGG | 0.341127 | 3_2:-73114663 | None:intergenic |
| ATAGGAAGATATGCATTTAA+AGG | 0.361554 | 3_2:+73113923 | None:intergenic |
| CGATTATTCTACGAGTTTAG+TGG | 0.386306 | 3_2:+73114343 | Msa0423340:CDS |
| TAGGAACTACCTGATACTTT+CGG | 0.400617 | 3_2:+73114634 | Msa0423340:intron |
| TCCGAACATCACATTTGGTA+TGG | 0.417548 | 3_2:-73114749 | None:intergenic |
| ATCTACTTCCACCAAGGTAC+TGG | 0.428620 | 3_2:-73114384 | None:intergenic |
| GAGCAATGGCACTTGCTAGA+TGG | 0.450654 | 3_2:+73114244 | Msa0423340:CDS |
| CCGAACATCACATTTGGTAT+GGG | 0.451435 | 3_2:-73114748 | None:intergenic |
| TGCCGCACTCATGGAATGAT+AGG | 0.462626 | 3_2:-73114455 | None:intergenic |
| TTGTGCTGCCAATGGTATTG+AGG | 0.463000 | 3_2:+73114789 | Msa0423340:CDS |
| AAATATTTAGCAACGAAGAA+TGG | 0.465634 | 3_2:-73114208 | None:intergenic |
| TGATAGGGTGGATAATCAAC+TGG | 0.472004 | 3_2:-73114439 | None:intergenic |
| CCAAATGTGATGTTCGGAAA+AGG | 0.475440 | 3_2:+73114754 | Msa0423340:CDS |
| CCCATACCAAATGTGATGTT+CGG | 0.477035 | 3_2:+73114748 | Msa0423340:CDS |
| GGCCGTTGTTGACAGATGGT+TGG | 0.487397 | 3_2:+73114311 | Msa0423340:CDS |
| ACACGATGCTGCCGCACTCA+TGG | 0.487735 | 3_2:-73114464 | None:intergenic |
| GTCATGCGTTTATCAACGCT+TGG | 0.494559 | 3_2:-73114872 | None:intergenic |
| TGTGCTGCCAATGGTATTGA+GGG | 0.501205 | 3_2:+73114790 | Msa0423340:CDS |
| ATTATTGCTTTCCAGTACCT+TGG | 0.503165 | 3_2:+73114373 | Msa0423340:CDS |
| TAAATATTTCTATGAGCTGC+CGG | 0.503453 | 3_2:+73114222 | Msa0423340:CDS |
| AACTTTAGTGGTAAAATTTG+GGG | 0.508761 | 3_2:-73113955 | None:intergenic |
| TCTAGCAAGTGCCATTGCTC+CGG | 0.526455 | 3_2:-73114241 | None:intergenic |
| ACAGGAATGATATTGTCATA+AGG | 0.528831 | 3_2:-73114703 | None:intergenic |
| AGTCGGCCGTTGTTGACAGA+TGG | 0.531450 | 3_2:+73114307 | Msa0423340:CDS |
| ATTGCTTTCCAGTACCTTGG+TGG | 0.549152 | 3_2:+73114376 | Msa0423340:CDS |
| CGAACATCACATTTGGTATG+GGG | 0.552019 | 3_2:-73114747 | None:intergenic |
| TCTCTATATTTGAGTCTCAC+AGG | 0.553100 | 3_2:-73114721 | None:intergenic |
| TCTATGAGCTGCCGGAGCAA+TGG | 0.563067 | 3_2:+73114230 | Msa0423340:CDS |
| TTTCAAGTGCAAGTGCGTCA+TGG | 0.567746 | 3_2:+73114828 | Msa0423340:CDS |
| CTGTCTAACTTCTAGGATGT+CGG | 0.570416 | 3_2:+73114175 | Msa0423340:intron |
| GTCTCCGCCCTCAATACCAT+TGG | 0.581950 | 3_2:-73114797 | None:intergenic |
| GGCACTTGCTAGATGGTGAT+GGG | 0.587848 | 3_2:+73114251 | Msa0423340:CDS |
| CACGATTACGTCATGTTGTG+CGG | 0.590860 | 3_2:+73114679 | Msa0423340:CDS |
| TGGCACTTGCTAGATGGTGA+TGG | 0.594754 | 3_2:+73114250 | Msa0423340:CDS |
| TATCCAGATAGGAACTTCAA+AGG | 0.596572 | 3_2:-73114494 | None:intergenic |
| ATGTGATGTTCGGAAAAGGT+TGG | 0.606400 | 3_2:+73114758 | Msa0423340:CDS |
| TGTTCAACAAATCAGTTAGT+CGG | 0.609582 | 3_2:+73114290 | Msa0423340:CDS |
| ACTTTAGTGGTAAAATTTGG+GGG | 0.613670 | 3_2:-73113954 | None:intergenic |
| GCCGCACTCATGGAATGATA+GGG | 0.629158 | 3_2:-73114454 | None:intergenic |
| ACCCTATCATTCCATGAGTG+CGG | 0.640367 | 3_2:+73114453 | Msa0423340:CDS |
| GCACTCATGGAATGATAGGG+TGG | 0.649652 | 3_2:-73114451 | None:intergenic |
| CTCCAACCATCTGTCAACAA+CGG | 0.679074 | 3_2:-73114313 | None:intergenic |
| TTTGAAATCTACTTCCACCA+AGG | 0.681040 | 3_2:-73114390 | None:intergenic |
| GCTGCCAATGGTATTGAGGG+CGG | 0.739556 | 3_2:+73114793 | Msa0423340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATATATGCTATAATAA+AGG | + | chr3_2:73114574-73114593 | Msa0423340:intron | 10.0% |
| !!! | CAATTTTTTTTTCTTTTTTT+AGG | + | chr3_2:73114615-73114634 | Msa0423340:intron | 10.0% |
| !! | ATTTATATATGCTATAATAA+AGG | + | chr3_2:73114574-73114593 | Msa0423340:intron | 10.0% |
| !!! | CAATTTTTTTTTCTTTTTTT+AGG | + | chr3_2:73114615-73114634 | Msa0423340:intron | 10.0% |
| !!! | TTTTTATTTAAATACGATGA+AGG | + | chr3_2:73114041-73114060 | Msa0423340:intron | 15.0% |
| !!! | TTTTATTTAAATACGATGAA+GGG | + | chr3_2:73114042-73114061 | Msa0423340:intron | 15.0% |
| !!! | TTTTTATTTAAATACGATGA+AGG | + | chr3_2:73114041-73114060 | Msa0423340:intron | 15.0% |
| !!! | TTTTATTTAAATACGATGAA+GGG | + | chr3_2:73114042-73114061 | Msa0423340:intron | 15.0% |
| !! | TAACTTTAGTGGTAAAATTT+GGG | - | chr3_2:73113959-73113978 | None:intergenic | 20.0% |
| !! | TTAACTTTAGTGGTAAAATT+TGG | - | chr3_2:73113960-73113979 | None:intergenic | 20.0% |
| !!! | ATGAAAATTAAATCCTCTTT+TGG | + | chr3_2:73114087-73114106 | Msa0423340:intron | 20.0% |
| !! | TTAGACAGTGTATTAAAAAA+GGG | - | chr3_2:73114163-73114182 | None:intergenic | 20.0% |
| !! | TAACTTTAGTGGTAAAATTT+GGG | - | chr3_2:73113959-73113978 | None:intergenic | 20.0% |
| !! | TTAACTTTAGTGGTAAAATT+TGG | - | chr3_2:73113960-73113979 | None:intergenic | 20.0% |
| !!! | ATGAAAATTAAATCCTCTTT+TGG | + | chr3_2:73114087-73114106 | Msa0423340:intron | 20.0% |
| !! | TTAGACAGTGTATTAAAAAA+GGG | - | chr3_2:73114163-73114182 | None:intergenic | 20.0% |
| ! | AACTTTAGTGGTAAAATTTG+GGG | - | chr3_2:73113958-73113977 | None:intergenic | 25.0% |
| !! | GAACGAAAATTTAACTTTAG+TGG | - | chr3_2:73113970-73113989 | None:intergenic | 25.0% |
| ! | TCATGCACATAATAAGTTTA+CGG | - | chr3_2:73114071-73114090 | None:intergenic | 25.0% |
| !! | AAATTAAATCCTCTTTTGGT+TGG | + | chr3_2:73114091-73114110 | Msa0423340:intron | 25.0% |
| ! | ATATTAAATCCAACCAAAAG+AGG | - | chr3_2:73114103-73114122 | None:intergenic | 25.0% |
| ! | GTTAGACAGTGTATTAAAAA+AGG | - | chr3_2:73114164-73114183 | None:intergenic | 25.0% |
| ! | AAATATTTAGCAACGAAGAA+TGG | - | chr3_2:73114211-73114230 | None:intergenic | 25.0% |
| ! | AACTTTAGTGGTAAAATTTG+GGG | - | chr3_2:73113958-73113977 | None:intergenic | 25.0% |
| !! | GAACGAAAATTTAACTTTAG+TGG | - | chr3_2:73113970-73113989 | None:intergenic | 25.0% |
| ! | TCATGCACATAATAAGTTTA+CGG | - | chr3_2:73114071-73114090 | None:intergenic | 25.0% |
| !! | AAATTAAATCCTCTTTTGGT+TGG | + | chr3_2:73114091-73114110 | Msa0423340:intron | 25.0% |
| ! | ATATTAAATCCAACCAAAAG+AGG | - | chr3_2:73114103-73114122 | None:intergenic | 25.0% |
| ! | GTTAGACAGTGTATTAAAAA+AGG | - | chr3_2:73114164-73114183 | None:intergenic | 25.0% |
| ! | AAATATTTAGCAACGAAGAA+TGG | - | chr3_2:73114211-73114230 | None:intergenic | 25.0% |
| ACTTTAGTGGTAAAATTTGG+GGG | - | chr3_2:73113957-73113976 | None:intergenic | 30.0% | |
| TAATACACTGTCTAACTTCT+AGG | + | chr3_2:73114168-73114187 | Msa0423340:intron | 30.0% | |
| ! | TAAATATTTCTATGAGCTGC+CGG | + | chr3_2:73114222-73114241 | Msa0423340:CDS | 30.0% |
| TGTTCAACAAATCAGTTAGT+CGG | + | chr3_2:73114290-73114309 | Msa0423340:CDS | 30.0% | |
| ACAGGAATGATATTGTCATA+AGG | - | chr3_2:73114706-73114725 | None:intergenic | 30.0% | |
| ACTTTAGTGGTAAAATTTGG+GGG | - | chr3_2:73113957-73113976 | None:intergenic | 30.0% | |
| TAATACACTGTCTAACTTCT+AGG | + | chr3_2:73114168-73114187 | Msa0423340:intron | 30.0% | |
| ! | TAAATATTTCTATGAGCTGC+CGG | + | chr3_2:73114222-73114241 | Msa0423340:CDS | 30.0% |
| TGTTCAACAAATCAGTTAGT+CGG | + | chr3_2:73114290-73114309 | Msa0423340:CDS | 30.0% | |
| ACAGGAATGATATTGTCATA+AGG | - | chr3_2:73114706-73114725 | None:intergenic | 30.0% | |
| CGATTATTCTACGAGTTTAG+TGG | + | chr3_2:73114343-73114362 | Msa0423340:CDS | 35.0% | |
| ATTATTGCTTTCCAGTACCT+TGG | + | chr3_2:73114373-73114392 | Msa0423340:CDS | 35.0% | |
| ! | TTTGAAATCTACTTCCACCA+AGG | - | chr3_2:73114393-73114412 | None:intergenic | 35.0% |
| TATCCAGATAGGAACTTCAA+AGG | - | chr3_2:73114497-73114516 | None:intergenic | 35.0% | |
| TTGAAGTTCCTATCTGGATA+TGG | + | chr3_2:73114497-73114516 | Msa0423340:intron | 35.0% | |
| TAGGAACTACCTGATACTTT+CGG | + | chr3_2:73114634-73114653 | Msa0423340:intron | 35.0% | |
| AATCGTGATGTTTCACTCTA+AGG | - | chr3_2:73114666-73114685 | None:intergenic | 35.0% | |
| TCTCTATATTTGAGTCTCAC+AGG | - | chr3_2:73114724-73114743 | None:intergenic | 35.0% | |
| CGATTATTCTACGAGTTTAG+TGG | + | chr3_2:73114343-73114362 | Msa0423340:CDS | 35.0% | |
| ATTATTGCTTTCCAGTACCT+TGG | + | chr3_2:73114373-73114392 | Msa0423340:CDS | 35.0% | |
| ! | TTTGAAATCTACTTCCACCA+AGG | - | chr3_2:73114393-73114412 | None:intergenic | 35.0% |
| TATCCAGATAGGAACTTCAA+AGG | - | chr3_2:73114497-73114516 | None:intergenic | 35.0% | |
| TTGAAGTTCCTATCTGGATA+TGG | + | chr3_2:73114497-73114516 | Msa0423340:intron | 35.0% | |
| TAGGAACTACCTGATACTTT+CGG | + | chr3_2:73114634-73114653 | Msa0423340:intron | 35.0% | |
| AATCGTGATGTTTCACTCTA+AGG | - | chr3_2:73114666-73114685 | None:intergenic | 35.0% | |
| TCTCTATATTTGAGTCTCAC+AGG | - | chr3_2:73114724-73114743 | None:intergenic | 35.0% | |
| CACAGTGCATGTAGAAAATC+AGG | + | chr3_2:73113992-73114011 | Msa0423340:CDS | 40.0% | |
| !! | CTGTCTAACTTCTAGGATGT+CGG | + | chr3_2:73114175-73114194 | Msa0423340:intron | 40.0% |
| TGATAGGGTGGATAATCAAC+TGG | - | chr3_2:73114442-73114461 | None:intergenic | 40.0% | |
| !! | GTACCTTTGAAGTTCCTATC+TGG | + | chr3_2:73114491-73114510 | Msa0423340:intron | 40.0% |
| TGGATCGACGAAATCATTGA+AGG | + | chr3_2:73114517-73114536 | Msa0423340:intron | 40.0% | |
| !! | AGGAATTTGCCGAAAGTATC+AGG | - | chr3_2:73114646-73114665 | None:intergenic | 40.0% |
| CGAACATCACATTTGGTATG+GGG | - | chr3_2:73114750-73114769 | None:intergenic | 40.0% | |
| CCGAACATCACATTTGGTAT+GGG | - | chr3_2:73114751-73114770 | None:intergenic | 40.0% | |
| CCCATACCAAATGTGATGTT+CGG | + | chr3_2:73114748-73114767 | Msa0423340:CDS | 40.0% | |
| TCCGAACATCACATTTGGTA+TGG | - | chr3_2:73114752-73114771 | None:intergenic | 40.0% | |
| ! | CCTTTTCCGAACATCACATT+TGG | - | chr3_2:73114757-73114776 | None:intergenic | 40.0% |
| CCAAATGTGATGTTCGGAAA+AGG | + | chr3_2:73114754-73114773 | Msa0423340:CDS | 40.0% | |
| ATGTGATGTTCGGAAAAGGT+TGG | + | chr3_2:73114758-73114777 | Msa0423340:CDS | 40.0% | |
| CACAGTGCATGTAGAAAATC+AGG | + | chr3_2:73113992-73114011 | Msa0423340:CDS | 40.0% | |
| !! | CTGTCTAACTTCTAGGATGT+CGG | + | chr3_2:73114175-73114194 | Msa0423340:intron | 40.0% |
| TGATAGGGTGGATAATCAAC+TGG | - | chr3_2:73114442-73114461 | None:intergenic | 40.0% | |
| !! | GTACCTTTGAAGTTCCTATC+TGG | + | chr3_2:73114491-73114510 | Msa0423340:intron | 40.0% |
| TGGATCGACGAAATCATTGA+AGG | + | chr3_2:73114517-73114536 | Msa0423340:intron | 40.0% | |
| !! | AGGAATTTGCCGAAAGTATC+AGG | - | chr3_2:73114646-73114665 | None:intergenic | 40.0% |
| CGAACATCACATTTGGTATG+GGG | - | chr3_2:73114750-73114769 | None:intergenic | 40.0% | |
| CCGAACATCACATTTGGTAT+GGG | - | chr3_2:73114751-73114770 | None:intergenic | 40.0% | |
| CCCATACCAAATGTGATGTT+CGG | + | chr3_2:73114748-73114767 | Msa0423340:CDS | 40.0% | |
| TCCGAACATCACATTTGGTA+TGG | - | chr3_2:73114752-73114771 | None:intergenic | 40.0% | |
| ! | CCTTTTCCGAACATCACATT+TGG | - | chr3_2:73114757-73114776 | None:intergenic | 40.0% |
| CCAAATGTGATGTTCGGAAA+AGG | + | chr3_2:73114754-73114773 | Msa0423340:CDS | 40.0% | |
| ATGTGATGTTCGGAAAAGGT+TGG | + | chr3_2:73114758-73114777 | Msa0423340:CDS | 40.0% | |
| CTCCAACCATCTGTCAACAA+CGG | - | chr3_2:73114316-73114335 | None:intergenic | 45.0% | |
| ATTGCTTTCCAGTACCTTGG+TGG | + | chr3_2:73114376-73114395 | Msa0423340:CDS | 45.0% | |
| ATCTACTTCCACCAAGGTAC+TGG | - | chr3_2:73114387-73114406 | None:intergenic | 45.0% | |
| ACCCTATCATTCCATGAGTG+CGG | + | chr3_2:73114453-73114472 | Msa0423340:CDS | 45.0% | |
| TCGTCGATCCATATCCAGAT+AGG | - | chr3_2:73114508-73114527 | None:intergenic | 45.0% | |
| CACGATTACGTCATGTTGTG+CGG | + | chr3_2:73114679-73114698 | Msa0423340:CDS | 45.0% | |
| ! | ACGAGTTTTTGTGCTGCCAA+TGG | + | chr3_2:73114781-73114800 | Msa0423340:CDS | 45.0% |
| TTGTGCTGCCAATGGTATTG+AGG | + | chr3_2:73114789-73114808 | Msa0423340:CDS | 45.0% | |
| ! | TGTGCTGCCAATGGTATTGA+GGG | + | chr3_2:73114790-73114809 | Msa0423340:CDS | 45.0% |
| ! | TTTCAAGTGCAAGTGCGTCA+TGG | + | chr3_2:73114828-73114847 | Msa0423340:CDS | 45.0% |
| CTCCAACCATCTGTCAACAA+CGG | - | chr3_2:73114316-73114335 | None:intergenic | 45.0% | |
| ATTGCTTTCCAGTACCTTGG+TGG | + | chr3_2:73114376-73114395 | Msa0423340:CDS | 45.0% | |
| ATCTACTTCCACCAAGGTAC+TGG | - | chr3_2:73114387-73114406 | None:intergenic | 45.0% | |
| ACCCTATCATTCCATGAGTG+CGG | + | chr3_2:73114453-73114472 | Msa0423340:CDS | 45.0% | |
| TCGTCGATCCATATCCAGAT+AGG | - | chr3_2:73114508-73114527 | None:intergenic | 45.0% | |
| CACGATTACGTCATGTTGTG+CGG | + | chr3_2:73114679-73114698 | Msa0423340:CDS | 45.0% | |
| ! | ACGAGTTTTTGTGCTGCCAA+TGG | + | chr3_2:73114781-73114800 | Msa0423340:CDS | 45.0% |
| TTGTGCTGCCAATGGTATTG+AGG | + | chr3_2:73114789-73114808 | Msa0423340:CDS | 45.0% | |
| ! | TGTGCTGCCAATGGTATTGA+GGG | + | chr3_2:73114790-73114809 | Msa0423340:CDS | 45.0% |
| ! | TTTCAAGTGCAAGTGCGTCA+TGG | + | chr3_2:73114828-73114847 | Msa0423340:CDS | 45.0% |
| ! | TCTAGCAAGTGCCATTGCTC+CGG | - | chr3_2:73114244-73114263 | None:intergenic | 50.0% |
| ! | GAGCAATGGCACTTGCTAGA+TGG | + | chr3_2:73114244-73114263 | Msa0423340:CDS | 50.0% |
| ! | TGGCACTTGCTAGATGGTGA+TGG | + | chr3_2:73114250-73114269 | Msa0423340:CDS | 50.0% |
| ! | GGCACTTGCTAGATGGTGAT+GGG | + | chr3_2:73114251-73114270 | Msa0423340:CDS | 50.0% |
| GCACTCATGGAATGATAGGG+TGG | - | chr3_2:73114454-73114473 | None:intergenic | 50.0% | |
| GCCGCACTCATGGAATGATA+GGG | - | chr3_2:73114457-73114476 | None:intergenic | 50.0% | |
| TGCCGCACTCATGGAATGAT+AGG | - | chr3_2:73114458-73114477 | None:intergenic | 50.0% | |
| ! | TCTAGCAAGTGCCATTGCTC+CGG | - | chr3_2:73114244-73114263 | None:intergenic | 50.0% |
| ! | GAGCAATGGCACTTGCTAGA+TGG | + | chr3_2:73114244-73114263 | Msa0423340:CDS | 50.0% |
| ! | TGGCACTTGCTAGATGGTGA+TGG | + | chr3_2:73114250-73114269 | Msa0423340:CDS | 50.0% |
| ! | GGCACTTGCTAGATGGTGAT+GGG | + | chr3_2:73114251-73114270 | Msa0423340:CDS | 50.0% |
| GCACTCATGGAATGATAGGG+TGG | - | chr3_2:73114454-73114473 | None:intergenic | 50.0% | |
| GCCGCACTCATGGAATGATA+GGG | - | chr3_2:73114457-73114476 | None:intergenic | 50.0% | |
| TGCCGCACTCATGGAATGAT+AGG | - | chr3_2:73114458-73114477 | None:intergenic | 50.0% | |
| TCTATGAGCTGCCGGAGCAA+TGG | + | chr3_2:73114230-73114249 | Msa0423340:CDS | 55.0% | |
| AGTCGGCCGTTGTTGACAGA+TGG | + | chr3_2:73114307-73114326 | Msa0423340:CDS | 55.0% | |
| GGCCGTTGTTGACAGATGGT+TGG | + | chr3_2:73114311-73114330 | Msa0423340:CDS | 55.0% | |
| ! | GCTGCCAATGGTATTGAGGG+CGG | + | chr3_2:73114793-73114812 | Msa0423340:CDS | 55.0% |
| GTCTCCGCCCTCAATACCAT+TGG | - | chr3_2:73114800-73114819 | None:intergenic | 55.0% | |
| TCTATGAGCTGCCGGAGCAA+TGG | + | chr3_2:73114230-73114249 | Msa0423340:CDS | 55.0% | |
| AGTCGGCCGTTGTTGACAGA+TGG | + | chr3_2:73114307-73114326 | Msa0423340:CDS | 55.0% | |
| GGCCGTTGTTGACAGATGGT+TGG | + | chr3_2:73114311-73114330 | Msa0423340:CDS | 55.0% | |
| ! | GCTGCCAATGGTATTGAGGG+CGG | + | chr3_2:73114793-73114812 | Msa0423340:CDS | 55.0% |
| GTCTCCGCCCTCAATACCAT+TGG | - | chr3_2:73114800-73114819 | None:intergenic | 55.0% | |
| ACACGATGCTGCCGCACTCA+TGG | - | chr3_2:73114467-73114486 | None:intergenic | 60.0% | |
| ACACGATGCTGCCGCACTCA+TGG | - | chr3_2:73114467-73114486 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 73113933 | 73114882 | 73113933 | ID=Msa0423340;Name=Msa0423340 |
| chr3_2 | mRNA | 73113933 | 73114882 | 73113933 | ID=Msa0423340-mRNA-1;Parent=Msa0423340;Name=Msa0423340-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|1|1|1|3|0|212 |
| chr3_2 | exon | 73113933 | 73114013 | 73113933 | ID=Msa0423340-mRNA-1:exon:18185;Parent=Msa0423340-mRNA-1 |
| chr3_2 | exon | 73114190 | 73114501 | 73114190 | ID=Msa0423340-mRNA-1:exon:18186;Parent=Msa0423340-mRNA-1 |
| chr3_2 | exon | 73114637 | 73114882 | 73114637 | ID=Msa0423340-mRNA-1:exon:18187;Parent=Msa0423340-mRNA-1 |
| chr3_2 | CDS | 73113933 | 73114013 | 73113933 | ID=Msa0423340-mRNA-1:cds;Parent=Msa0423340-mRNA-1 |
| chr3_2 | CDS | 73114190 | 73114501 | 73114190 | ID=Msa0423340-mRNA-1:cds;Parent=Msa0423340-mRNA-1 |
| chr3_2 | CDS | 73114637 | 73114882 | 73114637 | ID=Msa0423340-mRNA-1:cds;Parent=Msa0423340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
