Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0424060 | PNX58908.1 | 56.838 | 234 | 47 | 5 | 13 | 192 | 8 | 241 | 3.90e-71 | 226 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0424060 | A0A2K3JY24 | 56.838 | 234 | 47 | 5 | 13 | 192 | 8 | 241 | 1.86e-71 | 226 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0424060 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0424060 | MtrunA17_Chr3g0077451 | 52.889 | 225 | 61 | 4 | 13 | 192 | 16 | 240 | 3.71e-72 | 218 |
| Msa0424060 | MtrunA17_Chr5g0429931 | 49.597 | 248 | 69 | 6 | 1 | 192 | 1 | 248 | 1.86e-69 | 211 |
| Msa0424060 | MtrunA17_Chr3g0077431 | 56.897 | 174 | 57 | 2 | 37 | 192 | 28 | 201 | 4.44e-65 | 199 |
| Msa0424060 | MtrunA17_Chr3g0077421 | 56.647 | 173 | 56 | 2 | 37 | 190 | 28 | 200 | 1.33e-62 | 192 |
| Msa0424060 | MtrunA17_Chr3g0077441 | 56.647 | 173 | 56 | 2 | 37 | 190 | 28 | 200 | 1.33e-62 | 192 |
| Msa0424060 | MtrunA17_Chr3g0077411 | 46.091 | 243 | 69 | 3 | 12 | 192 | 281 | 523 | 9.25e-59 | 192 |
| Msa0424060 | MtrunA17_Chr3g0077411 | 40.670 | 209 | 91 | 5 | 5 | 180 | 35 | 243 | 6.19e-38 | 136 |
| Msa0424060 | MtrunA17_Chr3g0077461 | 45.755 | 212 | 74 | 6 | 13 | 184 | 257 | 467 | 2.04e-49 | 166 |
| Msa0424060 | MtrunA17_Chr3g0077461 | 43.062 | 209 | 84 | 5 | 13 | 191 | 27 | 230 | 1.41e-41 | 145 |
| Msa0424060 | MtrunA17_Chr3g0077361 | 44.019 | 209 | 80 | 5 | 12 | 192 | 308 | 507 | 1.61e-42 | 149 |
| Msa0424060 | MtrunA17_Chr3g0077361 | 43.721 | 215 | 85 | 6 | 5 | 183 | 50 | 264 | 7.64e-41 | 144 |
| Msa0424060 | MtrunA17_Chr4g0009491 | 43.784 | 185 | 51 | 3 | 13 | 144 | 245 | 429 | 8.36e-38 | 135 |
| Msa0424060 | MtrunA17_Chr4g0009491 | 44.086 | 186 | 70 | 5 | 13 | 165 | 17 | 201 | 1.14e-34 | 126 |
| Msa0424060 | MtrunA17_Chr3g0077381 | 43.617 | 188 | 58 | 4 | 5 | 144 | 257 | 444 | 1.13e-36 | 132 |
| Msa0424060 | MtrunA17_Chr3g0077381 | 40.686 | 204 | 67 | 5 | 13 | 183 | 40 | 222 | 8.64e-31 | 116 |
| Msa0424060 | MtrunA17_Chr5g0421921 | 48.837 | 86 | 42 | 2 | 108 | 192 | 30 | 114 | 2.87e-20 | 81.6 |
| Msa0424060 | MtrunA17_Chr5g0421731 | 48.837 | 86 | 42 | 2 | 108 | 192 | 30 | 114 | 2.87e-20 | 81.6 |
| Msa0424060 | MtrunA17_Chr5g0421851 | 48.837 | 86 | 42 | 2 | 108 | 192 | 105 | 189 | 5.80e-19 | 80.5 |
| Msa0424060 | MtrunA17_Chr1g0162441 | 42.353 | 85 | 46 | 2 | 108 | 191 | 315 | 397 | 2.40e-11 | 61.6 |
| Msa0424060 | MtrunA17_Chr4g0033961 | 42.857 | 84 | 43 | 3 | 108 | 189 | 311 | 391 | 4.92e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 31 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGCTCTCCATGAGAATTT+TGG | 0.185651 | 3_2:-74265332 | None:intergenic |
| CTTTATTTGCATTGTACCTT+TGG | 0.273221 | 3_2:-74265382 | None:intergenic |
| CTCAAAACTCCCAGTACTAA+TGG | 0.335837 | 3_2:+74264197 | Msa0424060:CDS |
| GCTTGGCTCTCCATTAGTAC+TGG | 0.344198 | 3_2:-74264207 | None:intergenic |
| TGACATTCATGTGAAGCAAC+AGG | 0.412146 | 3_2:+74264274 | Msa0424060:CDS |
| TACTTGACTTTCAAATATGA+AGG | 0.430120 | 3_2:+74264116 | Msa0424060:CDS |
| GGATTATGACACTTTGTGCT+TGG | 0.453374 | 3_2:-74264224 | None:intergenic |
| CTTGGCTCTCCATTAGTACT+GGG | 0.477667 | 3_2:-74264206 | None:intergenic |
| AGGTACAATGCAAATAAAGA+AGG | 0.498583 | 3_2:+74265386 | Msa0424060:CDS |
| TTTCTCCATACTTGACCATC+GGG | 0.503280 | 3_2:-74264017 | None:intergenic |
| TTGGAACATTTGACTTCAGA+TGG | 0.505390 | 3_2:-74265302 | None:intergenic |
| AGATTATTGCGTGTTTGAGC+TGG | 0.505745 | 3_2:+74265449 | Msa0424060:CDS |
| ATAAAGCTCCAAAATTCTCA+TGG | 0.514793 | 3_2:+74265324 | Msa0424060:CDS |
| AGTGTCATAATCCTAGCAAA+AGG | 0.515842 | 3_2:+74264234 | Msa0424060:CDS |
| TAATCCTAGCAAAAGGATCA+AGG | 0.532746 | 3_2:+74264241 | Msa0424060:CDS |
| TGAGCTGGTCGAGAAGAATC+CGG | 0.538768 | 3_2:+74265464 | Msa0424060:CDS |
| GTTTCTCCATACTTGACCAT+CGG | 0.554283 | 3_2:-74264018 | None:intergenic |
| ACTTGACTTTCAAATATGAA+GGG | 0.557534 | 3_2:+74264117 | Msa0424060:CDS |
| GCTACAATTATTGTTCCCGA+TGG | 0.558463 | 3_2:+74264002 | Msa0424060:CDS |
| AACACGCAATAATCTCCAGC+TGG | 0.562644 | 3_2:-74265441 | None:intergenic |
| AGGGACAACAATATGCCAGC+TGG | 0.563713 | 3_2:+74265426 | Msa0424060:CDS |
| TGTGTATCTTATGATTCCAA+AGG | 0.564349 | 3_2:+74265366 | Msa0424060:CDS |
| GACATTCATGTGAAGCAACA+GGG | 0.566176 | 3_2:+74264275 | Msa0424060:CDS |
| AAATTCTCATGGAGAGCAGT+GGG | 0.586451 | 3_2:+74265335 | Msa0424060:CDS |
| GGTACAATGCAAATAAAGAA+GGG | 0.587793 | 3_2:+74265387 | Msa0424060:CDS |
| ATCTTGTTATAAAATTCATG+TGG | 0.600552 | 3_2:-74263956 | None:intergenic |
| AAAATTCTCATGGAGAGCAG+TGG | 0.606270 | 3_2:+74265334 | Msa0424060:CDS |
| ACTATTCTATAGAATACGGT+CGG | 0.626032 | 3_2:+74264089 | Msa0424060:intron |
| AAGCATATCTGAAAGAGCAA+AGG | 0.626737 | 3_2:+74264301 | Msa0424060:CDS |
| ACATTCATGTGAAGCAACAG+GGG | 0.665285 | 3_2:+74264276 | Msa0424060:CDS |
| GCTGGTCGAGAAGAATCCGG+TGG | 0.731524 | 3_2:+74265467 | Msa0424060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGAATTTTATAACAAGATT+TGG | + | chr3_2:74263960-74263979 | Msa0424060:CDS | 15.0% |
| !!! | TTTATTTTACCTTTCAAAAA+AGG | + | chr3_2:74264414-74264433 | Msa0424060:intron | 15.0% |
| !! | ATAATTCTAATGTTATTGAA+GGG | - | chr3_2:74264482-74264501 | None:intergenic | 15.0% |
| !! | AATAATTCTAATGTTATTGA+AGG | - | chr3_2:74264483-74264502 | None:intergenic | 15.0% |
| !! | TTATCTTTATATCAATAGAT+TGG | + | chr3_2:74264582-74264601 | Msa0424060:intron | 15.0% |
| !!! | ATGAATTTTATAACAAGATT+TGG | + | chr3_2:74263960-74263979 | Msa0424060:CDS | 15.0% |
| !!! | TTTATTTTACCTTTCAAAAA+AGG | + | chr3_2:74264414-74264433 | Msa0424060:intron | 15.0% |
| !! | ATAATTCTAATGTTATTGAA+GGG | - | chr3_2:74264482-74264501 | None:intergenic | 15.0% |
| !! | AATAATTCTAATGTTATTGA+AGG | - | chr3_2:74264483-74264502 | None:intergenic | 15.0% |
| !! | TTATCTTTATATCAATAGAT+TGG | + | chr3_2:74264582-74264601 | Msa0424060:intron | 15.0% |
| !!! | ATCTTGTTATAAAATTCATG+TGG | - | chr3_2:74263959-74263978 | None:intergenic | 20.0% |
| !! | GATTACTATTCTATAGAATA+CGG | + | chr3_2:74264085-74264104 | Msa0424060:intron | 20.0% |
| !! | TTTCACATTAAAATAGTAGA+TGG | + | chr3_2:74264345-74264364 | Msa0424060:intron | 20.0% |
| !!! | ATTTTAATGCCTTTTTTGAA+AGG | - | chr3_2:74264426-74264445 | None:intergenic | 20.0% |
| !! | TCCTTTATCTTTATATCAAA+AGG | + | chr3_2:74264502-74264521 | Msa0424060:intron | 20.0% |
| !!! | ACCTTTTGATATAAAGATAA+AGG | - | chr3_2:74264506-74264525 | None:intergenic | 20.0% |
| !! | TTGATATAAAGATAATAACG+AGG | - | chr3_2:74264577-74264596 | None:intergenic | 20.0% |
| !! | AATAGTTTCTTAATTGAGAA+AGG | + | chr3_2:74264719-74264738 | Msa0424060:intron | 20.0% |
| !!! | AAAGCAAAAGAAGTTTTTAT+GGG | - | chr3_2:74264983-74265002 | None:intergenic | 20.0% |
| !!! | AAAAGCAAAAGAAGTTTTTA+TGG | - | chr3_2:74264984-74265003 | None:intergenic | 20.0% |
| !!! | GAGTTTTACTTTATAGTTTT+TGG | + | chr3_2:74265191-74265210 | Msa0424060:intron | 20.0% |
| !!! | ATCTTGTTATAAAATTCATG+TGG | - | chr3_2:74263959-74263978 | None:intergenic | 20.0% |
| !! | GATTACTATTCTATAGAATA+CGG | + | chr3_2:74264085-74264104 | Msa0424060:intron | 20.0% |
| !! | TTTCACATTAAAATAGTAGA+TGG | + | chr3_2:74264345-74264364 | Msa0424060:intron | 20.0% |
| !!! | ATTTTAATGCCTTTTTTGAA+AGG | - | chr3_2:74264426-74264445 | None:intergenic | 20.0% |
| !! | TCCTTTATCTTTATATCAAA+AGG | + | chr3_2:74264502-74264521 | Msa0424060:intron | 20.0% |
| !!! | ACCTTTTGATATAAAGATAA+AGG | - | chr3_2:74264506-74264525 | None:intergenic | 20.0% |
| !! | TTGATATAAAGATAATAACG+AGG | - | chr3_2:74264577-74264596 | None:intergenic | 20.0% |
| !! | AATAGTTTCTTAATTGAGAA+AGG | + | chr3_2:74264719-74264738 | Msa0424060:intron | 20.0% |
| !!! | AAAGCAAAAGAAGTTTTTAT+GGG | - | chr3_2:74264983-74265002 | None:intergenic | 20.0% |
| !!! | AAAAGCAAAAGAAGTTTTTA+TGG | - | chr3_2:74264984-74265003 | None:intergenic | 20.0% |
| !!! | GAGTTTTACTTTATAGTTTT+TGG | + | chr3_2:74265191-74265210 | Msa0424060:intron | 20.0% |
| ! | TACTTGACTTTCAAATATGA+AGG | + | chr3_2:74264116-74264135 | Msa0424060:CDS | 25.0% |
| ! | ACTTGACTTTCAAATATGAA+GGG | + | chr3_2:74264117-74264136 | Msa0424060:CDS | 25.0% |
| !! | AATTTAACTCGCATTTTACT+TGG | + | chr3_2:74264443-74264462 | Msa0424060:intron | 25.0% |
| ! | CATATAATAACGCTCAAAAT+GGG | - | chr3_2:74264554-74264573 | None:intergenic | 25.0% |
| !!! | TACTAGCCTATTTGTTTTAT+CGG | + | chr3_2:74264624-74264643 | Msa0424060:intron | 25.0% |
| ! | GAATTTCCGATAAAACAAAT+AGG | - | chr3_2:74264633-74264652 | None:intergenic | 25.0% |
| ! | TATATAAAGTCCTTAAAGAG+TGG | - | chr3_2:74264672-74264691 | None:intergenic | 25.0% |
| ! | AACGTCAGTAAAAAAAAAAG+GGG | - | chr3_2:74264760-74264779 | None:intergenic | 25.0% |
| ! | GAACGTCAGTAAAAAAAAAA+GGG | - | chr3_2:74264761-74264780 | None:intergenic | 25.0% |
| ! | TGAACGTCAGTAAAAAAAAA+AGG | - | chr3_2:74264762-74264781 | None:intergenic | 25.0% |
| ! | TATAAAGAATGTGAGATGAA+GGG | - | chr3_2:74264884-74264903 | None:intergenic | 25.0% |
| ! | ATATAAAGAATGTGAGATGA+AGG | - | chr3_2:74264885-74264904 | None:intergenic | 25.0% |
| ! | CAAATAAAGAATGTTAGCAA+TGG | - | chr3_2:74264908-74264927 | None:intergenic | 25.0% |
| ! | AGGAACAAAAAAGAAAGAAA+TGG | - | chr3_2:74265026-74265045 | None:intergenic | 25.0% |
| ! | AAATCATGTCTAAAAGAGTA+AGG | + | chr3_2:74265095-74265114 | Msa0424060:intron | 25.0% |
| ! | AATCATGTCTAAAAGAGTAA+GGG | + | chr3_2:74265096-74265115 | Msa0424060:intron | 25.0% |
| !!! | GAAAGGAAATAAGGATTTTT+TGG | - | chr3_2:74265142-74265161 | None:intergenic | 25.0% |
| !! | AGGGATTTTCTATATTTCAA+AGG | + | chr3_2:74265406-74265425 | Msa0424060:CDS | 25.0% |
| !! | GGGATTTTCTATATTTCAAA+GGG | + | chr3_2:74265407-74265426 | Msa0424060:CDS | 25.0% |
| ! | TACTTGACTTTCAAATATGA+AGG | + | chr3_2:74264116-74264135 | Msa0424060:CDS | 25.0% |
| ! | ACTTGACTTTCAAATATGAA+GGG | + | chr3_2:74264117-74264136 | Msa0424060:CDS | 25.0% |
| !! | AATTTAACTCGCATTTTACT+TGG | + | chr3_2:74264443-74264462 | Msa0424060:intron | 25.0% |
| ! | CATATAATAACGCTCAAAAT+GGG | - | chr3_2:74264554-74264573 | None:intergenic | 25.0% |
| !!! | TACTAGCCTATTTGTTTTAT+CGG | + | chr3_2:74264624-74264643 | Msa0424060:intron | 25.0% |
| ! | GAATTTCCGATAAAACAAAT+AGG | - | chr3_2:74264633-74264652 | None:intergenic | 25.0% |
| ! | TATATAAAGTCCTTAAAGAG+TGG | - | chr3_2:74264672-74264691 | None:intergenic | 25.0% |
| ! | AACGTCAGTAAAAAAAAAAG+GGG | - | chr3_2:74264760-74264779 | None:intergenic | 25.0% |
| ! | GAACGTCAGTAAAAAAAAAA+GGG | - | chr3_2:74264761-74264780 | None:intergenic | 25.0% |
| ! | TGAACGTCAGTAAAAAAAAA+AGG | - | chr3_2:74264762-74264781 | None:intergenic | 25.0% |
| ! | TATAAAGAATGTGAGATGAA+GGG | - | chr3_2:74264884-74264903 | None:intergenic | 25.0% |
| ! | ATATAAAGAATGTGAGATGA+AGG | - | chr3_2:74264885-74264904 | None:intergenic | 25.0% |
| ! | CAAATAAAGAATGTTAGCAA+TGG | - | chr3_2:74264908-74264927 | None:intergenic | 25.0% |
| ! | AGGAACAAAAAAGAAAGAAA+TGG | - | chr3_2:74265026-74265045 | None:intergenic | 25.0% |
| ! | AAATCATGTCTAAAAGAGTA+AGG | + | chr3_2:74265095-74265114 | Msa0424060:intron | 25.0% |
| ! | AATCATGTCTAAAAGAGTAA+GGG | + | chr3_2:74265096-74265115 | Msa0424060:intron | 25.0% |
| !!! | GAAAGGAAATAAGGATTTTT+TGG | - | chr3_2:74265142-74265161 | None:intergenic | 25.0% |
| !! | AGGGATTTTCTATATTTCAA+AGG | + | chr3_2:74265406-74265425 | Msa0424060:CDS | 25.0% |
| !! | GGGATTTTCTATATTTCAAA+GGG | + | chr3_2:74265407-74265426 | Msa0424060:CDS | 25.0% |
| ! | AGGTTTTCTTTTGCAACAAA+TGG | + | chr3_2:74264050-74264069 | Msa0424060:intron | 30.0% |
| ACTATTCTATAGAATACGGT+CGG | + | chr3_2:74264089-74264108 | Msa0424060:intron | 30.0% | |
| GCATATAATAACGCTCAAAA+TGG | - | chr3_2:74264555-74264574 | None:intergenic | 30.0% | |
| ! | CATTAATTTTGTGAACCGAT+GGG | + | chr3_2:74264787-74264806 | Msa0424060:intron | 30.0% |
| ACAAGATCAGTGTAAACATT+AGG | - | chr3_2:74264942-74264961 | None:intergenic | 30.0% | |
| TGACACTCATTTGTAACAAT+AGG | + | chr3_2:74265069-74265088 | Msa0424060:intron | 30.0% | |
| !!! | ATTTTTTGGCTTGAATGCTT+CGG | - | chr3_2:74265128-74265147 | None:intergenic | 30.0% |
| !! | GTGCATTTTGAAAGGAAATA+AGG | - | chr3_2:74265151-74265170 | None:intergenic | 30.0% |
| TTTCCTTTCAAAATGCACAA+AGG | + | chr3_2:74265153-74265172 | Msa0424060:intron | 30.0% | |
| TTCCTTTCAAAATGCACAAA+GGG | + | chr3_2:74265154-74265173 | Msa0424060:intron | 30.0% | |
| !!! | TGAGAATTTTGGAGCTTTAT+TGG | - | chr3_2:74265324-74265343 | None:intergenic | 30.0% |
| ATAAAGCTCCAAAATTCTCA+TGG | + | chr3_2:74265324-74265343 | Msa0424060:CDS | 30.0% | |
| TGTGTATCTTATGATTCCAA+AGG | + | chr3_2:74265366-74265385 | Msa0424060:CDS | 30.0% | |
| ! | CTTTATTTGCATTGTACCTT+TGG | - | chr3_2:74265385-74265404 | None:intergenic | 30.0% |
| AGGTACAATGCAAATAAAGA+AGG | + | chr3_2:74265386-74265405 | Msa0424060:CDS | 30.0% | |
| GGTACAATGCAAATAAAGAA+GGG | + | chr3_2:74265387-74265406 | Msa0424060:CDS | 30.0% | |
| ! | AGGTTTTCTTTTGCAACAAA+TGG | + | chr3_2:74264050-74264069 | Msa0424060:intron | 30.0% |
| ACTATTCTATAGAATACGGT+CGG | + | chr3_2:74264089-74264108 | Msa0424060:intron | 30.0% | |
| GCATATAATAACGCTCAAAA+TGG | - | chr3_2:74264555-74264574 | None:intergenic | 30.0% | |
| ! | CATTAATTTTGTGAACCGAT+GGG | + | chr3_2:74264787-74264806 | Msa0424060:intron | 30.0% |
| ACAAGATCAGTGTAAACATT+AGG | - | chr3_2:74264942-74264961 | None:intergenic | 30.0% | |
| TGACACTCATTTGTAACAAT+AGG | + | chr3_2:74265069-74265088 | Msa0424060:intron | 30.0% | |
| !!! | ATTTTTTGGCTTGAATGCTT+CGG | - | chr3_2:74265128-74265147 | None:intergenic | 30.0% |
| !! | GTGCATTTTGAAAGGAAATA+AGG | - | chr3_2:74265151-74265170 | None:intergenic | 30.0% |
| TTTCCTTTCAAAATGCACAA+AGG | + | chr3_2:74265153-74265172 | Msa0424060:intron | 30.0% | |
| TTCCTTTCAAAATGCACAAA+GGG | + | chr3_2:74265154-74265173 | Msa0424060:intron | 30.0% | |
| !!! | TGAGAATTTTGGAGCTTTAT+TGG | - | chr3_2:74265324-74265343 | None:intergenic | 30.0% |
| ATAAAGCTCCAAAATTCTCA+TGG | + | chr3_2:74265324-74265343 | Msa0424060:CDS | 30.0% | |
| TGTGTATCTTATGATTCCAA+AGG | + | chr3_2:74265366-74265385 | Msa0424060:CDS | 30.0% | |
| ! | CTTTATTTGCATTGTACCTT+TGG | - | chr3_2:74265385-74265404 | None:intergenic | 30.0% |
| AGGTACAATGCAAATAAAGA+AGG | + | chr3_2:74265386-74265405 | Msa0424060:CDS | 30.0% | |
| GGTACAATGCAAATAAAGAA+GGG | + | chr3_2:74265387-74265406 | Msa0424060:CDS | 30.0% | |
| AGTGTCATAATCCTAGCAAA+AGG | + | chr3_2:74264234-74264253 | Msa0424060:CDS | 35.0% | |
| TAATCCTAGCAAAAGGATCA+AGG | + | chr3_2:74264241-74264260 | Msa0424060:CDS | 35.0% | |
| AAGCATATCTGAAAGAGCAA+AGG | + | chr3_2:74264301-74264320 | Msa0424060:CDS | 35.0% | |
| ! | GTTTTATCGGAAATTCTAGC+AGG | + | chr3_2:74264637-74264656 | Msa0424060:intron | 35.0% |
| ! | GCATTAATTTTGTGAACCGA+TGG | + | chr3_2:74264786-74264805 | Msa0424060:intron | 35.0% |
| ! | GAAGTTTTTATGGGAAAGAG+AGG | - | chr3_2:74264974-74264993 | None:intergenic | 35.0% |
| !! | TACAAATGAGTGTCACTTGA+CGG | - | chr3_2:74265064-74265083 | None:intergenic | 35.0% |
| ! | TTCCCTTTGTGCATTTTGAA+AGG | - | chr3_2:74265159-74265178 | None:intergenic | 35.0% |
| ATGCACAAAGGGAAATTAAG+CGG | + | chr3_2:74265165-74265184 | Msa0424060:intron | 35.0% | |
| AGAAGTAACATACTGCACAA+TGG | - | chr3_2:74265268-74265287 | None:intergenic | 35.0% | |
| ! | TTGGAACATTTGACTTCAGA+TGG | - | chr3_2:74265305-74265324 | None:intergenic | 35.0% |
| AGTGTCATAATCCTAGCAAA+AGG | + | chr3_2:74264234-74264253 | Msa0424060:CDS | 35.0% | |
| TAATCCTAGCAAAAGGATCA+AGG | + | chr3_2:74264241-74264260 | Msa0424060:CDS | 35.0% | |
| AAGCATATCTGAAAGAGCAA+AGG | + | chr3_2:74264301-74264320 | Msa0424060:CDS | 35.0% | |
| ! | GTTTTATCGGAAATTCTAGC+AGG | + | chr3_2:74264637-74264656 | Msa0424060:intron | 35.0% |
| ! | GCATTAATTTTGTGAACCGA+TGG | + | chr3_2:74264786-74264805 | Msa0424060:intron | 35.0% |
| ! | GAAGTTTTTATGGGAAAGAG+AGG | - | chr3_2:74264974-74264993 | None:intergenic | 35.0% |
| !! | TACAAATGAGTGTCACTTGA+CGG | - | chr3_2:74265064-74265083 | None:intergenic | 35.0% |
| ! | TTCCCTTTGTGCATTTTGAA+AGG | - | chr3_2:74265159-74265178 | None:intergenic | 35.0% |
| ATGCACAAAGGGAAATTAAG+CGG | + | chr3_2:74265165-74265184 | Msa0424060:intron | 35.0% | |
| AGAAGTAACATACTGCACAA+TGG | - | chr3_2:74265268-74265287 | None:intergenic | 35.0% | |
| ! | TTGGAACATTTGACTTCAGA+TGG | - | chr3_2:74265305-74265324 | None:intergenic | 35.0% |
| GCTACAATTATTGTTCCCGA+TGG | + | chr3_2:74264002-74264021 | Msa0424060:CDS | 40.0% | |
| TTTCTCCATACTTGACCATC+GGG | - | chr3_2:74264020-74264039 | None:intergenic | 40.0% | |
| GTTTCTCCATACTTGACCAT+CGG | - | chr3_2:74264021-74264040 | None:intergenic | 40.0% | |
| !!! | TTAGTACTGGGAGTTTTGAG+AGG | - | chr3_2:74264197-74264216 | None:intergenic | 40.0% |
| CTCAAAACTCCCAGTACTAA+TGG | + | chr3_2:74264197-74264216 | Msa0424060:CDS | 40.0% | |
| GGATTATGACACTTTGTGCT+TGG | - | chr3_2:74264227-74264246 | None:intergenic | 40.0% | |
| ! | TCAACCTTGATCCTTTTGCT+AGG | - | chr3_2:74264248-74264267 | None:intergenic | 40.0% |
| TGACATTCATGTGAAGCAAC+AGG | + | chr3_2:74264274-74264293 | Msa0424060:CDS | 40.0% | |
| GACATTCATGTGAAGCAACA+GGG | + | chr3_2:74264275-74264294 | Msa0424060:CDS | 40.0% | |
| ACATTCATGTGAAGCAACAG+GGG | + | chr3_2:74264276-74264295 | Msa0424060:CDS | 40.0% | |
| AGTCCTTAAAGAGTGGCTTA+GGG | - | chr3_2:74264665-74264684 | None:intergenic | 40.0% | |
| AAGTCCTTAAAGAGTGGCTT+AGG | - | chr3_2:74264666-74264685 | None:intergenic | 40.0% | |
| ! | TTTTGTGAACCGATGGGAAT+TGG | + | chr3_2:74264793-74264812 | Msa0424060:intron | 40.0% |
| TCCAATTGACCAATTCCCAT+CGG | - | chr3_2:74264805-74264824 | None:intergenic | 40.0% | |
| !! | ACAAATGAGTGTCACTTGAC+GGG | - | chr3_2:74265063-74265082 | None:intergenic | 40.0% |
| CATGTCTAAAAGAGTAAGGG+AGG | + | chr3_2:74265099-74265118 | Msa0424060:intron | 40.0% | |
| ! | ACTGCTCTCCATGAGAATTT+TGG | - | chr3_2:74265335-74265354 | None:intergenic | 40.0% |
| AAAATTCTCATGGAGAGCAG+TGG | + | chr3_2:74265334-74265353 | Msa0424060:CDS | 40.0% | |
| AAATTCTCATGGAGAGCAGT+GGG | + | chr3_2:74265335-74265354 | Msa0424060:CDS | 40.0% | |
| AGATTATTGCGTGTTTGAGC+TGG | + | chr3_2:74265449-74265468 | Msa0424060:CDS | 40.0% | |
| ! | ATTGTGACTTTTAGCACCAC+CGG | - | chr3_2:74265486-74265505 | None:intergenic | 40.0% |
| GCTACAATTATTGTTCCCGA+TGG | + | chr3_2:74264002-74264021 | Msa0424060:CDS | 40.0% | |
| TTTCTCCATACTTGACCATC+GGG | - | chr3_2:74264020-74264039 | None:intergenic | 40.0% | |
| GTTTCTCCATACTTGACCAT+CGG | - | chr3_2:74264021-74264040 | None:intergenic | 40.0% | |
| !!! | TTAGTACTGGGAGTTTTGAG+AGG | - | chr3_2:74264197-74264216 | None:intergenic | 40.0% |
| CTCAAAACTCCCAGTACTAA+TGG | + | chr3_2:74264197-74264216 | Msa0424060:CDS | 40.0% | |
| GGATTATGACACTTTGTGCT+TGG | - | chr3_2:74264227-74264246 | None:intergenic | 40.0% | |
| ! | TCAACCTTGATCCTTTTGCT+AGG | - | chr3_2:74264248-74264267 | None:intergenic | 40.0% |
| TGACATTCATGTGAAGCAAC+AGG | + | chr3_2:74264274-74264293 | Msa0424060:CDS | 40.0% | |
| GACATTCATGTGAAGCAACA+GGG | + | chr3_2:74264275-74264294 | Msa0424060:CDS | 40.0% | |
| ACATTCATGTGAAGCAACAG+GGG | + | chr3_2:74264276-74264295 | Msa0424060:CDS | 40.0% | |
| AGTCCTTAAAGAGTGGCTTA+GGG | - | chr3_2:74264665-74264684 | None:intergenic | 40.0% | |
| AAGTCCTTAAAGAGTGGCTT+AGG | - | chr3_2:74264666-74264685 | None:intergenic | 40.0% | |
| ! | TTTTGTGAACCGATGGGAAT+TGG | + | chr3_2:74264793-74264812 | Msa0424060:intron | 40.0% |
| TCCAATTGACCAATTCCCAT+CGG | - | chr3_2:74264805-74264824 | None:intergenic | 40.0% | |
| !! | ACAAATGAGTGTCACTTGAC+GGG | - | chr3_2:74265063-74265082 | None:intergenic | 40.0% |
| CATGTCTAAAAGAGTAAGGG+AGG | + | chr3_2:74265099-74265118 | Msa0424060:intron | 40.0% | |
| ! | ACTGCTCTCCATGAGAATTT+TGG | - | chr3_2:74265335-74265354 | None:intergenic | 40.0% |
| AAAATTCTCATGGAGAGCAG+TGG | + | chr3_2:74265334-74265353 | Msa0424060:CDS | 40.0% | |
| AAATTCTCATGGAGAGCAGT+GGG | + | chr3_2:74265335-74265354 | Msa0424060:CDS | 40.0% | |
| AGATTATTGCGTGTTTGAGC+TGG | + | chr3_2:74265449-74265468 | Msa0424060:CDS | 40.0% | |
| ! | ATTGTGACTTTTAGCACCAC+CGG | - | chr3_2:74265486-74265505 | None:intergenic | 40.0% |
| TTGTTCCCGATGGTCAAGTA+TGG | + | chr3_2:74264012-74264031 | Msa0424060:intron | 45.0% | |
| TGGTCAAGTATGGAGAAACG+TGG | + | chr3_2:74264022-74264041 | Msa0424060:intron | 45.0% | |
| TCAAGTATGGAGAAACGTGG+TGG | + | chr3_2:74264025-74264044 | Msa0424060:intron | 45.0% | |
| CAAGTATGGAGAAACGTGGT+GGG | + | chr3_2:74264026-74264045 | Msa0424060:intron | 45.0% | |
| ! | CTTGGCTCTCCATTAGTACT+GGG | - | chr3_2:74264209-74264228 | None:intergenic | 45.0% |
| ACCGATGGGAATTGGTCAAT+TGG | + | chr3_2:74264801-74264820 | Msa0424060:intron | 45.0% | |
| AACACGCAATAATCTCCAGC+TGG | - | chr3_2:74265444-74265463 | None:intergenic | 45.0% | |
| TTGTTCCCGATGGTCAAGTA+TGG | + | chr3_2:74264012-74264031 | Msa0424060:intron | 45.0% | |
| TGGTCAAGTATGGAGAAACG+TGG | + | chr3_2:74264022-74264041 | Msa0424060:intron | 45.0% | |
| TCAAGTATGGAGAAACGTGG+TGG | + | chr3_2:74264025-74264044 | Msa0424060:intron | 45.0% | |
| CAAGTATGGAGAAACGTGGT+GGG | + | chr3_2:74264026-74264045 | Msa0424060:intron | 45.0% | |
| ! | CTTGGCTCTCCATTAGTACT+GGG | - | chr3_2:74264209-74264228 | None:intergenic | 45.0% |
| ACCGATGGGAATTGGTCAAT+TGG | + | chr3_2:74264801-74264820 | Msa0424060:intron | 45.0% | |
| AACACGCAATAATCTCCAGC+TGG | - | chr3_2:74265444-74265463 | None:intergenic | 45.0% | |
| ! | GCTTGGCTCTCCATTAGTAC+TGG | - | chr3_2:74264210-74264229 | None:intergenic | 50.0% |
| GTGCCCTAAGCCACTCTTTA+AGG | + | chr3_2:74264659-74264678 | Msa0424060:intron | 50.0% | |
| GACGGGAAGGATAAGAGTCA+AGG | - | chr3_2:74265046-74265065 | None:intergenic | 50.0% | |
| !! | ATGAGTGTCACTTGACGGGA+AGG | - | chr3_2:74265059-74265078 | None:intergenic | 50.0% |
| AGGGACAACAATATGCCAGC+TGG | + | chr3_2:74265426-74265445 | Msa0424060:CDS | 50.0% | |
| TGAGCTGGTCGAGAAGAATC+CGG | + | chr3_2:74265464-74265483 | Msa0424060:CDS | 50.0% | |
| ! | GCTTGGCTCTCCATTAGTAC+TGG | - | chr3_2:74264210-74264229 | None:intergenic | 50.0% |
| GTGCCCTAAGCCACTCTTTA+AGG | + | chr3_2:74264659-74264678 | Msa0424060:intron | 50.0% | |
| GACGGGAAGGATAAGAGTCA+AGG | - | chr3_2:74265046-74265065 | None:intergenic | 50.0% | |
| !! | ATGAGTGTCACTTGACGGGA+AGG | - | chr3_2:74265059-74265078 | None:intergenic | 50.0% |
| AGGGACAACAATATGCCAGC+TGG | + | chr3_2:74265426-74265445 | Msa0424060:CDS | 50.0% | |
| TGAGCTGGTCGAGAAGAATC+CGG | + | chr3_2:74265464-74265483 | Msa0424060:CDS | 50.0% | |
| !! | TATGGAGAAACGTGGTGGGC+AGG | + | chr3_2:74264030-74264049 | Msa0424060:intron | 55.0% |
| !! | TATGGAGAAACGTGGTGGGC+AGG | + | chr3_2:74264030-74264049 | Msa0424060:intron | 55.0% |
| GCTGGTCGAGAAGAATCCGG+TGG | + | chr3_2:74265467-74265486 | Msa0424060:CDS | 60.0% | |
| GCTGGTCGAGAAGAATCCGG+TGG | + | chr3_2:74265467-74265486 | Msa0424060:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 74263930 | 74265533 | 74263930 | ID=Msa0424060;Name=Msa0424060 |
| chr3_2 | mRNA | 74263930 | 74265533 | 74263930 | ID=Msa0424060-mRNA-1;Parent=Msa0424060;Name=Msa0424060-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|1|1|1|3|0|192 |
| chr3_2 | exon | 74263930 | 74264028 | 74263930 | ID=Msa0424060-mRNA-1:exon:18689;Parent=Msa0424060-mRNA-1 |
| chr3_2 | exon | 74264101 | 74264322 | 74264101 | ID=Msa0424060-mRNA-1:exon:18690;Parent=Msa0424060-mRNA-1 |
| chr3_2 | exon | 74265276 | 74265533 | 74265276 | ID=Msa0424060-mRNA-1:exon:18691;Parent=Msa0424060-mRNA-1 |
| chr3_2 | CDS | 74263930 | 74264028 | 74263930 | ID=Msa0424060-mRNA-1:cds;Parent=Msa0424060-mRNA-1 |
| chr3_2 | CDS | 74264101 | 74264322 | 74264101 | ID=Msa0424060-mRNA-1:cds;Parent=Msa0424060-mRNA-1 |
| chr3_2 | CDS | 74265276 | 74265533 | 74265276 | ID=Msa0424060-mRNA-1:cds;Parent=Msa0424060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
