AlfalfaGEDB | Msa0428090

M. sativa cultivar zhongmu-4 / Msa0428090

KEGG: K13412
GO: GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0428090	XP_003602701.2	94.378	498	28	0	1	498	1	498	0.0	968

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0428090	sp\|P28583\|CDPK_SOYBN	80.745	483	93	0	16	498	18	500	0.0	825

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0428090	G7J2N7	94.378	498	28	0	1	498	1	498	0.0	968

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0428090	MtrunA17_Chr3g0131181	89.375	480	51	0	19	498	16	495	891
Msa0428090	MtrunA17_Chr8g0385341	78.715	498	104	1	1	498	1	496	826
Msa0428090	MtrunA17_Chr1g0200601	72.131	488	132	3	1	486	1	486	749
Msa0428090	MtrunA17_Chr1g0170281	67.647	476	151	2	20	492	106	581	684
Msa0428090	MtrunA17_Chr5g0448721	66.529	484	160	1	5	486	67	550	681
Msa0428090	MtrunA17_Chr1g0176751	65.281	481	163	1	16	492	108	588	655
Msa0428090	MtrunA17_Chr1g0176421	60.780	487	159	1	20	474	149	635	625
Msa0428090	MtrunA17_Chr7g0267751	63.617	459	167	0	28	486	131	589	620
Msa0428090	MtrunA17_Chr0c02g0489761	59.743	467	187	1	7	472	53	519	590
Msa0428090	MtrunA17_Chr5g0441691	60.652	460	180	1	14	472	50	509	589

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0428090	AT1G35670.1	73.573	473	122	3	15	486	10	480	733
Msa0428090	AT4G09570.1	73.504	468	122	2	20	486	13	479	725
Msa0428090	AT5G23580.1	73.246	456	122	0	15	470	5	460	714
Msa0428090	AT4G35310.2	67.304	471	154	0	16	486	81	551	680
Msa0428090	AT4G35310.1	67.304	471	154	0	16	486	81	551	680
Msa0428090	AT3G10660.2	68.490	457	144	0	16	472	170	626	679
Msa0428090	AT3G10660.1	68.490	457	144	0	16	472	170	626	679
Msa0428090	AT5G04870.1	68.490	457	144	0	16	472	134	590	678
Msa0428090	AT2G17290.1	66.879	471	156	0	16	486	69	539	669
Msa0428090	AT2G17290.2	66.879	471	156	0	16	486	69	539	669

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Find 119 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATTATCAGTACTGATT+TGG	0.339232	3_2:+78863303	Msa0428090:three_prime_UTR
AAACTGGGTGAAGGTCAATT+CGG	0.520468	3_2:+78859513	Msa0428090:CDS
AAATAAATACCAGCACAAAA+CGG	0.573917	3_2:-78861058	None:intergenic
AACACCACCGAAAACCACAT+GGG	0.666392	3_2:+78859440	Msa0428090:CDS
AACGCCAGCACTCCACACGT+CGG	0.730334	3_2:-78861005	None:intergenic
AAGAGGATTATGATGATGTT+TGG	0.389948	3_2:+78859616	Msa0428090:CDS
AAGGAAGGCTTACAGCGAGT+AGG	0.661068	3_2:+78862534	Msa0428090:CDS
AAGGATGAGATTTGCAAGAA+TGG	0.489492	3_2:+78863421	Msa0428090:three_prime_UTR
AAGGTGGGGAATTGTTTGAT+AGG	0.482447	3_2:+78859745	Msa0428090:CDS
AATAACGGGACACTCGATTA+TGG	0.355165	3_2:+78862729	Msa0428090:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTACACCTTAGGTAAAAAAC+TGG	+	chr3_2:78859497-78859516	Msa0428090:CDS	30.0%
TACACCTTAGGTAAAAAACT+GGG	+	chr3_2:78859498-78859517	Msa0428090:CDS	30.0%
CATTTGGATGTTCAGATAAA+TGG	-	chr3_2:78859662-78859681	None:intergenic	30.0%
ATGAATCCTCATAAGTTTCA+TGG	-	chr3_2:78859695-78859714	None:intergenic	30.0%
ACAGAAAATTCTCAGGTTTA+AGG	-	chr3_2:78859875-78859894	None:intergenic	30.0%
GAATCAAACAGAAAATTCTC+AGG	-	chr3_2:78859882-78859901	None:intergenic	30.0%
CAATCAGATTCTTTAGTACT+AGG	+	chr3_2:78860207-78860226	Msa0428090:intron	30.0%
TCAAAGTTCAGTTCATCAAT+TGG	+	chr3_2:78860317-78860336	Msa0428090:intron	30.0%
TTCAGTTCATCAATTGGTTA+TGG	+	chr3_2:78860323-78860342	Msa0428090:intron	30.0%
TAAGGTTCCATAATAAACCA+TGG	-	chr3_2:78860425-78860444	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	78859308	78863487	78859308	ID=Msa0428090;Name=Msa0428090
chr3_2	mRNA	78859308	78863487	78859308	ID=Msa0428090-mRNA-1;Parent=Msa0428090;Name=Msa0428090-mRNA-1;_AED=0.33;_eAED=0.33;_QI=97\|1\|1\|1\|1\|1\|7\|248\|498
chr3_2	exon	78859308	78859963	78859308	ID=Msa0428090-mRNA-1:exon:21051;Parent=Msa0428090-mRNA-1
chr3_2	exon	78860927	78861070	78860927	ID=Msa0428090-mRNA-1:exon:21052;Parent=Msa0428090-mRNA-1
chr3_2	exon	78861202	78861354	78861202	ID=Msa0428090-mRNA-1:exon:21053;Parent=Msa0428090-mRNA-1
chr3_2	exon	78861464	78861579	78861464	ID=Msa0428090-mRNA-1:exon:21054;Parent=Msa0428090-mRNA-1
chr3_2	exon	78862432	78862599	78862432	ID=Msa0428090-mRNA-1:exon:21055;Parent=Msa0428090-mRNA-1
chr3_2	exon	78862717	78862941	78862717	ID=Msa0428090-mRNA-1:exon:21056;Parent=Msa0428090-mRNA-1
chr3_2	exon	78863108	78863487	78863108	ID=Msa0428090-mRNA-1:exon:21057;Parent=Msa0428090-mRNA-1
chr3_2	five_prime_UTR	78859308	78859404	78859308	ID=Msa0428090-mRNA-1:five_prime_utr;Parent=Msa0428090-mRNA-1
chr3_2	CDS	78859405	78859963	78859405	ID=Msa0428090-mRNA-1:cds;Parent=Msa0428090-mRNA-1
chr3_2	CDS	78860927	78861070	78860927	ID=Msa0428090-mRNA-1:cds;Parent=Msa0428090-mRNA-1
chr3_2	CDS	78861202	78861354	78861202	ID=Msa0428090-mRNA-1:cds;Parent=Msa0428090-mRNA-1
chr3_2	CDS	78861464	78861579	78861464	ID=Msa0428090-mRNA-1:cds;Parent=Msa0428090-mRNA-1
chr3_2	CDS	78862432	78862599	78862432	ID=Msa0428090-mRNA-1:cds;Parent=Msa0428090-mRNA-1
chr3_2	CDS	78862717	78862941	78862717	ID=Msa0428090-mRNA-1:cds;Parent=Msa0428090-mRNA-1
chr3_2	CDS	78863108	78863239	78863108	ID=Msa0428090-mRNA-1:cds;Parent=Msa0428090-mRNA-1
chr3_2	three_prime_UTR	78863240	78863487	78863240	ID=Msa0428090-mRNA-1:three_prime_utr;Parent=Msa0428090-mRNA-1

Gene Sequence

>Msa0428090

ATGTCGAAATCAAACATCCCAAACAACACAACACTAACACCACCGAAAACCACATGGGTTCTCCCTCGTGTAACAAAGAATCTCCATGAAGTTTACACCTTAGGTAAAAAACTGGGTGAAGGTCAATTCGGTGTCACATATCGCTGCACGCACAACACAACAGGTCGAGCCTACGCTTGCAAGTCTATATCAAAGAAGAAACTGTTATGCAAAGAGGATTATGATGATGTTTGGAGAGAGATTCAGATAATGCACCATTTATCTGAACATCCAAATGTTGTGAAGATCCATGAAACTTATGAGGATTCATTTTTTGTTCATTTGGTTATGGAGCTTTGTGAAGGTGGGGAATTGTTTGATAGGATTGTGCAGAAGGGACATTATAGTGAGAGACAAGCTGCTAAGTTGATTAGAACTATTGTTGAGATTGTTGAAGCTTGTCATTCTCTTGGAGTTATGCATAGAGACCTTAAACCTGAGAATTTTCTGTTTGATTCTGTTGATGAAGATGCTATTCTCAAAGCTATTGATTTTGGGCTGTCTGTTTTTTATAAGCCAGGTGAAATCTTTAGTGATATTTCTGGAAGCCCATACTATGTTGCACCAGAGGTCTTGCACAAGAAGTATGGATCTGAAGCCGACGTGTGGAGTGCTGGCGTTATTCTGTACATCTTGTTAAGCGGGAGGCTTCCGTTTTGTGCTGACACCGAAAATGGGATCTTCCGACAGATTTGCCGTGGAAGACTTAATTTCCAGTCTGAGCCATGGCCTGAGATTTCAGACAGCGCCAAGGATCTAATTCGAAAGATGCTTGATAGGAATCCAAGAACAAGGTTTACAGCTCACCAAGTGCTCTGTCACCCATGGATTGTTGATGATAAAATTGCACCAGACAAACCTCTTGACTCGGCTGTTTTATCTCGTCTGAAGCAATTCTCTGCCATGAATAAACTGAAAAAGATGGCTTTACATGTTATTGCCAAGAGGCTTAACGAAGAAGAAATCGGTGGTCTGAAAGAATTGTTTAGGATGCTTGACACTGACAATAGTGGAACCATAACATTGGATGAGCTAAAGGAAGGCTTACAGCGAGTAGGATCGGAACTTATGGAGTCTGAAATCAAGGATCTTATGGATGCAGCAGACATTGATAATAACGGGACACTCGATTATGGTGAATTCATTGCTGCTACTGTCCACTTAAATAAGCTGGAGCGAGAGGAAAATCTATTGTCAGCATTCTCGTACTTTGATAAGGATGGAAGCGGGTGCATAACCATTGACGAGATACAAGCAGCTTGTAAGGAGTTTGGTTTGGATGATGTTCATATTGATGAAATGGTCAAGGAAGTTGATCAAAATAATGATGGACAAATAGACTATGGAGAGTTTGCTGCCATGATGAGAAAGGGCAATGGAGGGATCGGAAGGCGAACAATGACAAGCACACTCAATTTCAGGGAAGATCTAGAAATCATAGGCAATGGGTCCAATTAA

Protein sequence

>Msa0428090

MSKSNIPNNTTLTPPKTTWVLPRVTKNLHEVYTLGKKLGEGQFGVTYRCTHNTTGRAYACKSISKKKLLCKEDYDDVWREIQIMHHLSEHPNVVKIHETYEDSFFVHLVMELCEGGELFDRIVQKGHYSERQAAKLIRTIVEIVEACHSLGVMHRDLKPENFLFDSVDEDAILKAIDFGLSVFYKPGEIFSDISGSPYYVAPEVLHKKYGSEADVWSAGVILYILLSGRLPFCADTENGIFRQICRGRLNFQSEPWPEISDSAKDLIRKMLDRNPRTRFTAHQVLCHPWIVDDKIAPDKPLDSAVLSRLKQFSAMNKLKKMALHVIAKRLNEEEIGGLKELFRMLDTDNSGTITLDELKEGLQRVGSELMESEIKDLMDAADIDNNGTLDYGEFIAATVHLNKLEREENLLSAFSYFDKDGSGCITIDEIQAACKEFGLDDVHIDEMVKEVDQNNDGQIDYGEFAAMMRKGNGGIGRRTMTSTLNFREDLEIIGNGSN*