Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428460 | RHN70095.1 | 90.184 | 326 | 18 | 2 | 1 | 312 | 7 | 332 | 0.0 | 600 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428460 | sp|Q8RYD1|REM16_ARATH | 28.923 | 325 | 170 | 13 | 11 | 289 | 18 | 327 | 2.53e-17 | 84.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428460 | A0A396J148 | 90.184 | 326 | 18 | 2 | 1 | 312 | 7 | 332 | 0.0 | 600 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0428460 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428460 | MtrunA17_Chr3g0131891 | 90.184 | 326 | 18 | 2 | 1 | 312 | 7 | 332 | 0.0 | 600 |
| Msa0428460 | MtrunA17_Chr7g0233561 | 64.815 | 324 | 90 | 4 | 1 | 300 | 6 | 329 | 2.80e-146 | 414 |
| Msa0428460 | MtrunA17_Chr7g0233531 | 67.616 | 281 | 82 | 3 | 28 | 300 | 1 | 280 | 1.02e-127 | 365 |
| Msa0428460 | MtrunA17_Chr7g0233541 | 64.646 | 297 | 81 | 6 | 28 | 300 | 1 | 297 | 3.92e-125 | 359 |
| Msa0428460 | MtrunA17_Chr7g0233521 | 60.000 | 295 | 81 | 6 | 28 | 300 | 1 | 280 | 2.94e-112 | 326 |
| Msa0428460 | MtrunA17_Chr7g0233571 | 60.274 | 219 | 59 | 6 | 1 | 194 | 1 | 216 | 1.87e-78 | 238 |
| Msa0428460 | MtrunA17_Chr8g0390841 | 33.639 | 327 | 167 | 11 | 11 | 301 | 37 | 349 | 1.62e-44 | 159 |
| Msa0428460 | MtrunA17_Chr1g0163071 | 34.323 | 303 | 136 | 9 | 28 | 283 | 1 | 287 | 4.51e-43 | 150 |
| Msa0428460 | MtrunA17_Chr1g0208771 | 31.190 | 311 | 162 | 11 | 29 | 301 | 13 | 309 | 9.98e-40 | 144 |
| Msa0428460 | MtrunA17_Chr3g0103181 | 31.164 | 292 | 161 | 10 | 10 | 282 | 9 | 279 | 5.71e-34 | 125 |
| Msa0428460 | MtrunA17_Chr1g0171611 | 32.155 | 283 | 158 | 10 | 10 | 281 | 6 | 265 | 1.08e-30 | 117 |
| Msa0428460 | MtrunA17_Chr1g0163231 | 28.720 | 289 | 172 | 9 | 10 | 281 | 6 | 277 | 5.29e-29 | 112 |
| Msa0428460 | MtrunA17_Chr1g0163181 | 30.526 | 285 | 166 | 9 | 22 | 281 | 14 | 291 | 2.89e-27 | 110 |
| Msa0428460 | MtrunA17_Chr4g0067431 | 29.739 | 306 | 174 | 11 | 11 | 282 | 13 | 311 | 5.04e-26 | 105 |
| Msa0428460 | MtrunA17_Chr1g0154161 | 29.773 | 309 | 185 | 10 | 11 | 300 | 28 | 323 | 1.72e-25 | 103 |
| Msa0428460 | MtrunA17_Chr1g0163221 | 29.492 | 295 | 172 | 10 | 11 | 282 | 9 | 290 | 1.03e-24 | 102 |
| Msa0428460 | MtrunA17_Chr1g0163261 | 28.435 | 313 | 194 | 10 | 10 | 307 | 6 | 303 | 1.03e-24 | 101 |
| Msa0428460 | MtrunA17_Chr3g0103171 | 27.562 | 283 | 155 | 10 | 28 | 282 | 5 | 265 | 4.83e-24 | 98.6 |
| Msa0428460 | MtrunA17_Chr3g0103151 | 46.535 | 101 | 46 | 2 | 10 | 104 | 9 | 107 | 1.15e-23 | 95.1 |
| Msa0428460 | MtrunA17_Chr3g0077451 | 26.054 | 261 | 159 | 5 | 27 | 286 | 10 | 237 | 1.55e-23 | 96.7 |
| Msa0428460 | MtrunA17_Chr3g0103191 | 45.545 | 101 | 47 | 2 | 10 | 104 | 9 | 107 | 2.76e-23 | 96.3 |
| Msa0428460 | MtrunA17_Chr1g0163251 | 30.576 | 278 | 166 | 10 | 22 | 283 | 14 | 280 | 6.69e-23 | 97.8 |
| Msa0428460 | MtrunA17_Chr5g0419201 | 37.273 | 110 | 58 | 2 | 13 | 111 | 16 | 125 | 7.57e-20 | 85.5 |
| Msa0428460 | MtrunA17_Chr1g0163201 | 30.216 | 278 | 160 | 10 | 29 | 283 | 19 | 285 | 1.64e-19 | 88.2 |
| Msa0428460 | MtrunA17_Chr1g0154131 | 26.603 | 312 | 183 | 10 | 11 | 290 | 177 | 474 | 2.87e-19 | 87.8 |
| Msa0428460 | MtrunA17_Chr3g0077461 | 28.302 | 265 | 139 | 8 | 12 | 270 | 236 | 455 | 6.49e-19 | 86.7 |
| Msa0428460 | MtrunA17_Chr3g0077461 | 26.295 | 251 | 114 | 10 | 29 | 270 | 23 | 211 | 2.48e-12 | 67.0 |
| Msa0428460 | MtrunA17_Chr3g0077411 | 25.177 | 282 | 176 | 8 | 11 | 282 | 260 | 516 | 1.16e-18 | 86.3 |
| Msa0428460 | MtrunA17_Chr3g0077411 | 30.435 | 138 | 87 | 3 | 12 | 141 | 24 | 160 | 2.31e-14 | 73.6 |
| Msa0428460 | MtrunA17_Chr4g0033961 | 38.168 | 131 | 69 | 3 | 164 | 288 | 269 | 393 | 2.91e-18 | 84.7 |
| Msa0428460 | MtrunA17_Chr4g0033961 | 33.929 | 112 | 66 | 1 | 13 | 116 | 6 | 117 | 1.27e-15 | 77.0 |
| Msa0428460 | MtrunA17_Chr5g0429931 | 25.830 | 271 | 152 | 8 | 29 | 286 | 11 | 245 | 9.44e-18 | 81.3 |
| Msa0428460 | MtrunA17_Chr1g0162441 | 37.594 | 133 | 71 | 3 | 164 | 290 | 273 | 399 | 1.18e-17 | 82.8 |
| Msa0428460 | MtrunA17_Chr1g0162441 | 37.647 | 85 | 53 | 0 | 13 | 97 | 7 | 91 | 1.52e-14 | 73.9 |
| Msa0428460 | MtrunA17_Chr1g0154191 | 24.781 | 343 | 176 | 10 | 11 | 281 | 20 | 352 | 4.85e-16 | 77.8 |
| Msa0428460 | MtrunA17_Chr3g0077431 | 26.407 | 231 | 136 | 5 | 57 | 286 | 1 | 198 | 5.22e-16 | 75.1 |
| Msa0428460 | MtrunA17_Chr3g0077361 | 24.364 | 275 | 150 | 7 | 12 | 286 | 288 | 504 | 5.57e-16 | 78.2 |
| Msa0428460 | MtrunA17_Chr3g0077361 | 25.000 | 260 | 149 | 8 | 12 | 270 | 39 | 253 | 1.38e-13 | 71.2 |
| Msa0428460 | MtrunA17_Chr1g0163101 | 35.385 | 130 | 73 | 4 | 8 | 129 | 12 | 138 | 7.61e-16 | 74.3 |
| Msa0428460 | MtrunA17_Chr1g0163131 | 27.667 | 300 | 174 | 12 | 11 | 279 | 16 | 303 | 7.93e-16 | 76.6 |
| Msa0428460 | MtrunA17_Chr1g0154151 | 24.451 | 319 | 167 | 9 | 16 | 281 | 14 | 311 | 1.04e-15 | 76.6 |
| Msa0428460 | MtrunA17_Chr6g0467351 | 33.333 | 150 | 80 | 4 | 11 | 153 | 13 | 149 | 4.41e-15 | 73.2 |
| Msa0428460 | MtrunA17_Chr1g0163061 | 40.385 | 104 | 55 | 2 | 11 | 107 | 13 | 116 | 2.59e-13 | 68.9 |
| Msa0428460 | MtrunA17_Chr1g0154251 | 34.091 | 88 | 57 | 1 | 11 | 98 | 25 | 111 | 4.29e-13 | 69.7 |
| Msa0428460 | MtrunA17_Chr1g0154101 | 35.227 | 88 | 57 | 0 | 11 | 98 | 23 | 110 | 4.94e-13 | 69.7 |
| Msa0428460 | MtrunA17_Chr1g0163241 | 36.792 | 106 | 59 | 2 | 29 | 128 | 23 | 126 | 1.22e-12 | 65.1 |
| Msa0428460 | MtrunA17_Chr1g0163141 | 33.333 | 141 | 70 | 5 | 27 | 147 | 9 | 145 | 2.04e-12 | 64.7 |
| Msa0428460 | MtrunA17_Chr4g0009491 | 26.991 | 226 | 127 | 8 | 12 | 229 | 224 | 419 | 3.10e-12 | 66.6 |
| Msa0428460 | MtrunA17_Chr1g0154211 | 32.955 | 88 | 58 | 1 | 11 | 98 | 21 | 107 | 3.37e-12 | 66.6 |
| Msa0428460 | MtrunA17_Chr1g0163191 | 43.421 | 76 | 41 | 1 | 22 | 97 | 14 | 87 | 5.77e-12 | 63.2 |
| Msa0428460 | MtrunA17_Chr1g0154171 | 34.091 | 88 | 57 | 1 | 11 | 98 | 21 | 107 | 1.19e-11 | 64.7 |
| Msa0428460 | MtrunA17_Chr1g0162411 | 36.471 | 85 | 54 | 0 | 13 | 97 | 7 | 91 | 1.22e-11 | 65.1 |
| Msa0428460 | MtrunA17_Chr1g0154241 | 31.818 | 88 | 59 | 1 | 11 | 98 | 20 | 106 | 2.22e-11 | 63.2 |
| Msa0428460 | MtrunA17_Chr1g0163091 | 35.922 | 103 | 61 | 3 | 181 | 283 | 22 | 119 | 2.67e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428460 | AT3G18990.2 | 25.737 | 373 | 184 | 13 | 10 | 304 | 2 | 359 | 2.51e-24 | 101 |
| Msa0428460 | AT3G18990.1 | 26.571 | 350 | 166 | 12 | 10 | 283 | 2 | 336 | 3.46e-24 | 100 |
| Msa0428460 | AT4G33280.1 | 28.923 | 325 | 170 | 13 | 11 | 289 | 18 | 327 | 2.57e-18 | 84.3 |
| Msa0428460 | AT4G01580.1 | 35.833 | 120 | 67 | 2 | 13 | 122 | 30 | 149 | 1.26e-17 | 79.7 |
| Msa0428460 | AT1G49475.1 | 37.037 | 108 | 61 | 2 | 13 | 114 | 34 | 140 | 5.78e-17 | 78.2 |
| Msa0428460 | AT3G18960.2 | 36.538 | 104 | 60 | 1 | 13 | 110 | 30 | 133 | 4.48e-16 | 75.5 |
| Msa0428460 | AT3G18960.1 | 36.538 | 104 | 60 | 1 | 13 | 110 | 30 | 133 | 5.23e-16 | 75.9 |
| Msa0428460 | AT1G49480.3 | 31.844 | 179 | 99 | 7 | 111 | 283 | 60 | 221 | 1.88e-13 | 68.9 |
| Msa0428460 | AT1G49480.1 | 31.844 | 179 | 99 | 7 | 111 | 283 | 60 | 221 | 1.88e-13 | 68.9 |
| Msa0428460 | AT1G49480.2 | 31.844 | 179 | 99 | 7 | 111 | 283 | 60 | 221 | 1.88e-13 | 68.9 |
| Msa0428460 | AT3G18960.3 | 38.636 | 88 | 48 | 1 | 29 | 110 | 9 | 96 | 4.64e-13 | 66.6 |
Find 53 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTAAATTGGAAATTAAATT+TGG | 0.186782 | 3_2:+79385352 | Msa0428460:CDS |
| GCTAACTCCTCCTTTGAAAT+TGG | 0.203833 | 3_2:+79385623 | Msa0428460:CDS |
| CAAAGATGTGCACATGAAAA+AGG | 0.205065 | 3_2:-79385481 | None:intergenic |
| TATTTCTCCACAAACTTTCT+TGG | 0.217927 | 3_2:-79385284 | None:intergenic |
| CATATCAAAGTAAGATTAAT+TGG | 0.230680 | 3_2:+79387150 | Msa0428460:CDS |
| CTTTCCAAGTTCATATATTC+AGG | 0.253552 | 3_2:+79387096 | Msa0428460:CDS |
| AGAAAGTTTGTGGAGAAATA+TGG | 0.293086 | 3_2:+79385287 | Msa0428460:CDS |
| GACAAGAGTTGAAGATAAAA+AGG | 0.297629 | 3_2:+79385535 | Msa0428460:CDS |
| TATGTTAAGCTACTTCTTCA+TGG | 0.302623 | 3_2:+79384374 | None:intergenic |
| AGACTCCAAATGGTGTAAAT+TGG | 0.312711 | 3_2:+79385339 | Msa0428460:CDS |
| AATTTCCAATTTACACCATT+TGG | 0.315099 | 3_2:-79385344 | None:intergenic |
| GCAGTAGTTGTGTTAATGTT+TGG | 0.316427 | 3_2:+79385648 | Msa0428460:CDS |
| TGCAACTTACCAGAAGAAAA+TGG | 0.347556 | 3_2:-79386483 | None:intergenic |
| ATCCTGATTCGGTACTTTGC+AGG | 0.347997 | 3_2:-79386957 | None:intergenic |
| CTACAATCTTCATTATTTGA+AGG | 0.379644 | 3_2:-79385581 | None:intergenic |
| AAGTGTCAAATGGCAGAGTT+TGG | 0.384047 | 3_2:+79386934 | Msa0428460:CDS |
| GGCCTGCAAAGTACCGAATC+AGG | 0.422243 | 3_2:+79386955 | Msa0428460:CDS |
| TGGCAAAATATGGTTTCAAA+AGG | 0.425042 | 3_2:+79385385 | Msa0428460:CDS |
| TCCATCCTTTGTTGTTGTCA+TGG | 0.427556 | 3_2:+79386441 | Msa0428460:CDS |
| CCATCCTTTGTTGTTGTCAT+GGG | 0.446533 | 3_2:+79386442 | Msa0428460:CDS |
| TTACAAGCTTTCCTTGATGA+AGG | 0.456239 | 3_2:-79384455 | None:intergenic |
| TTATCTTCAACTCTTGTCAA+AGG | 0.462374 | 3_2:-79385530 | None:intergenic |
| ATGATCTTGAAGAAGTGAAC+TGG | 0.487555 | 3_2:-79384420 | None:intergenic |
| ATATGTGTAAAGACTCCAAA+TGG | 0.489219 | 3_2:+79385329 | Msa0428460:CDS |
| TATCTTCAACTCTTGTCAAA+GGG | 0.493331 | 3_2:-79385529 | None:intergenic |
| CTTTCTGTCAATATGATGTA+CGG | 0.494299 | 3_2:-79385687 | None:intergenic |
| GAAGACAATAACTTGAAAGT+TGG | 0.499244 | 3_2:+79387032 | Msa0428460:CDS |
| TCTCCCTGAATATATGAACT+TGG | 0.502600 | 3_2:-79387100 | None:intergenic |
| GATGATGCCAAGAAAGTTTG+TGG | 0.504803 | 3_2:+79385277 | Msa0428460:intron |
| CGTACATCATATTGACAGAA+AGG | 0.506265 | 3_2:+79385688 | Msa0428460:CDS |
| CATCTTTGATAAGAGTGCCT+TGG | 0.514558 | 3_2:+79385496 | Msa0428460:intron |
| AAATATGGTTTCAAAAGGGA+TGG | 0.524548 | 3_2:+79385390 | Msa0428460:CDS |
| CATATTGACAGAAAGGGAAA+AGG | 0.525115 | 3_2:+79385695 | Msa0428460:CDS |
| TAATGTTTGGAAATTTCAAA+AGG | 0.527493 | 3_2:+79385661 | Msa0428460:CDS |
| CTGTGTGGGACATCCTGATT+CGG | 0.531424 | 3_2:-79386968 | None:intergenic |
| CAGACTATACCGTCTATGTT+CGG | 0.532014 | 3_2:+79386864 | Msa0428460:intron |
| GGCAAAATATGGTTTCAAAA+GGG | 0.535267 | 3_2:+79385386 | Msa0428460:CDS |
| TTTCCAAGTTCATATATTCA+GGG | 0.536079 | 3_2:+79387097 | Msa0428460:CDS |
| ACTACTGCTTCCAATTTCAA+AGG | 0.542132 | 3_2:-79385633 | None:intergenic |
| GTACATCATATTGACAGAAA+GGG | 0.549586 | 3_2:+79385689 | Msa0428460:CDS |
| CAAAGGGCTATTTATCTCCA+AGG | 0.557179 | 3_2:-79385513 | None:intergenic |
| CCCATGACAACAACAAAGGA+TGG | 0.571041 | 3_2:-79386442 | None:intergenic |
| GAGTATCATTCTCTAGCTCA+TGG | 0.575939 | 3_2:+79385425 | Msa0428460:CDS |
| CTAAGATTTGAACTCTCAAG+TGG | 0.579522 | 3_2:+79386993 | Msa0428460:CDS |
| CTTACTCAAAACCTTCATCA+AGG | 0.582547 | 3_2:+79384444 | Msa0428460:CDS |
| GATTTGAACTCTCAAGTGGA+TGG | 0.585291 | 3_2:+79386997 | Msa0428460:CDS |
| TTCAAATCTTAGTCCTGTGT+GGG | 0.598172 | 3_2:-79386982 | None:intergenic |
| TTTAATTTGAATAAGAAGCG+AGG | 0.603085 | 3_2:+79386897 | Msa0428460:CDS |
| ACTGCTTCCAATTTCAAAGG+AGG | 0.612452 | 3_2:-79385630 | None:intergenic |
| GTTCAAATCTTAGTCCTGTG+TGG | 0.647989 | 3_2:-79386983 | None:intergenic |
| TGTCTCTTACCGAACATAGA+CGG | 0.669663 | 3_2:-79386873 | None:intergenic |
| CGAATCAGGATGTCCCACAC+AGG | 0.680142 | 3_2:+79386969 | Msa0428460:CDS |
| TGCACCCATGACAACAACAA+AGG | 0.693553 | 3_2:-79386446 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTATATTAAAAAACATAAAA+AGG | - | chr3_2:79384609-79384628 | None:intergenic | 10.0% |
| !! | ATCTGTAATATAAATTATTT+AGG | - | chr3_2:79385007-79385026 | None:intergenic | 10.0% |
| !! | TGTAAATTGGAAATTAAATT+TGG | + | chr3_2:79385352-79385371 | Msa0428460:CDS | 15.0% |
| !!! | TTCATGTTATCATTTTTAAA+TGG | + | chr3_2:79385791-79385810 | Msa0428460:intron | 15.0% |
| !!! | AAGTTGATTTTAACATTTTT+TGG | + | chr3_2:79385920-79385939 | Msa0428460:intron | 15.0% |
| !!! | TTATTATTCAACTCATTTTT+AGG | + | chr3_2:79386040-79386059 | Msa0428460:intron | 15.0% |
| !!! | TGATGACTTTTATATACTTT+AGG | - | chr3_2:79384707-79384726 | None:intergenic | 20.0% |
| !!! | TTTTCTTGTTAGATGATAAA+AGG | - | chr3_2:79384838-79384857 | None:intergenic | 20.0% |
| !!! | ATTAATCTGGTTTAATTGAT+TGG | + | chr3_2:79385252-79385271 | Msa0428460:intron | 20.0% |
| !! | TTAAATTTGGTAAAAAGTGA+TGG | + | chr3_2:79385365-79385384 | Msa0428460:CDS | 20.0% |
| !! | TTCTTTCATATTTAAAAAGC+AGG | - | chr3_2:79385457-79385476 | None:intergenic | 20.0% |
| !! | TAATGTTTGGAAATTTCAAA+AGG | + | chr3_2:79385661-79385680 | Msa0428460:CDS | 20.0% |
| !!! | ATTGATTTTGTTTCTATAGT+TGG | + | chr3_2:79385957-79385976 | Msa0428460:intron | 20.0% |
| !!! | ATGAATTGATTTAGTAAAGA+TGG | - | chr3_2:79386276-79386295 | None:intergenic | 20.0% |
| !! | ACAACTAAATATCTACTTTA+TGG | + | chr3_2:79386327-79386346 | Msa0428460:intron | 20.0% |
| !! | CTCCATTAAGAAATATATAT+TGG | + | chr3_2:79386571-79386590 | Msa0428460:intron | 20.0% |
| !! | GACCAATATATATTTCTTAA+TGG | - | chr3_2:79386576-79386595 | None:intergenic | 20.0% |
| !! | CATATCAAAGTAAGATTAAT+TGG | + | chr3_2:79387150-79387169 | Msa0428460:CDS | 20.0% |
| ! | GAACAATCTATAACTCAAAT+TGG | - | chr3_2:79384482-79384501 | None:intergenic | 25.0% |
| ! | TGACATTTATATCGATATGA+TGG | - | chr3_2:79384879-79384898 | None:intergenic | 25.0% |
| !!! | TCTATTATTTTAACTTGCTC+TGG | + | chr3_2:79384934-79384953 | Msa0428460:intron | 25.0% |
| !! | TTTTCTTAAGCTTTTCTTGA+TGG | + | chr3_2:79385034-79385053 | Msa0428460:intron | 25.0% |
| ! | CACTATCATACATATTAATC+TGG | + | chr3_2:79385239-79385258 | Msa0428460:intron | 25.0% |
| !! | GTCTTTACACATATAGTTTT+CGG | - | chr3_2:79385323-79385342 | None:intergenic | 25.0% |
| ! | AATTTCCAATTTACACCATT+TGG | - | chr3_2:79385347-79385366 | None:intergenic | 25.0% |
| ! | TAAAAAGTGATGGCAAAATA+TGG | + | chr3_2:79385375-79385394 | Msa0428460:CDS | 25.0% |
| ! | CTACAATCTTCATTATTTGA+AGG | - | chr3_2:79385584-79385603 | None:intergenic | 25.0% |
| !!! | AAGATGGTTTTAGTTAAAAG+TGG | - | chr3_2:79386260-79386279 | None:intergenic | 25.0% |
| ! | GTAAGTTGCAAAGATAAATT+TGG | + | chr3_2:79386496-79386515 | Msa0428460:intron | 25.0% |
| ! | TTTCTTAATGGAGAAAGATT+TGG | - | chr3_2:79386564-79386583 | None:intergenic | 25.0% |
| !!! | TTTAATTTGAATAAGAAGCG+AGG | + | chr3_2:79386897-79386916 | Msa0428460:CDS | 25.0% |
| !!! | ATTCATTTTCAAGTGTCAAA+TGG | + | chr3_2:79386924-79386943 | Msa0428460:CDS | 25.0% |
| ! | TTTCCAAGTTCATATATTCA+GGG | + | chr3_2:79387097-79387116 | Msa0428460:CDS | 25.0% |
| TCTTGTTAGATGATAAAAGG+TGG | - | chr3_2:79384835-79384854 | None:intergenic | 30.0% | |
| ATCATCTAACAAGAAAACCA+CGG | + | chr3_2:79384841-79384860 | Msa0428460:intron | 30.0% | |
| TTGATGGAGTCTATAAACTA+TGG | + | chr3_2:79385050-79385069 | Msa0428460:intron | 30.0% | |
| TGATGGAGTCTATAAACTAT+GGG | + | chr3_2:79385051-79385070 | Msa0428460:intron | 30.0% | |
| ACTTGACAATTCGATGAAAT+TGG | + | chr3_2:79385178-79385197 | Msa0428460:intron | 30.0% | |
| TATTTCTCCACAAACTTTCT+TGG | - | chr3_2:79385287-79385306 | None:intergenic | 30.0% | |
| AGAAAGTTTGTGGAGAAATA+TGG | + | chr3_2:79385287-79385306 | Msa0428460:CDS | 30.0% | |
| ATATGTGTAAAGACTCCAAA+TGG | + | chr3_2:79385329-79385348 | Msa0428460:CDS | 30.0% | |
| TGGCAAAATATGGTTTCAAA+AGG | + | chr3_2:79385385-79385404 | Msa0428460:CDS | 30.0% | |
| GGCAAAATATGGTTTCAAAA+GGG | + | chr3_2:79385386-79385405 | Msa0428460:CDS | 30.0% | |
| AAATATGGTTTCAAAAGGGA+TGG | + | chr3_2:79385390-79385409 | Msa0428460:CDS | 30.0% | |
| CATATTTAAAAAGCAGGAGA+TGG | - | chr3_2:79385451-79385470 | None:intergenic | 30.0% | |
| AAAGATGTGCACATGAAAAA+GGG | - | chr3_2:79385483-79385502 | None:intergenic | 30.0% | |
| TATCTTCAACTCTTGTCAAA+GGG | - | chr3_2:79385532-79385551 | None:intergenic | 30.0% | |
| TTATCTTCAACTCTTGTCAA+AGG | - | chr3_2:79385533-79385552 | None:intergenic | 30.0% | |
| GACAAGAGTTGAAGATAAAA+AGG | + | chr3_2:79385535-79385554 | Msa0428460:CDS | 30.0% | |
| CTTTCTGTCAATATGATGTA+CGG | - | chr3_2:79385690-79385709 | None:intergenic | 30.0% | |
| GTACATCATATTGACAGAAA+GGG | + | chr3_2:79385689-79385708 | Msa0428460:CDS | 30.0% | |
| TTATACCTAGAGTTAACATG+AGG | - | chr3_2:79385823-79385842 | None:intergenic | 30.0% | |
| ! | TGGCATTTTTATTGTGTGTT+TGG | + | chr3_2:79385859-79385878 | Msa0428460:intron | 30.0% |
| !!! | CATTTTTTGGTCATGTCAAT+TGG | + | chr3_2:79385933-79385952 | Msa0428460:intron | 30.0% |
| TTGAGTGCAAAAATCATCTT+TGG | - | chr3_2:79386018-79386037 | None:intergenic | 30.0% | |
| ! | ATTGACTTTGTCTCAAGAAT+TGG | + | chr3_2:79386117-79386136 | Msa0428460:intron | 30.0% |
| TTGAGTGTAAAATTCACTCT+TGG | - | chr3_2:79386177-79386196 | None:intergenic | 30.0% | |
| ! | GATTGTGAAGTGTTTATGTT+TGG | - | chr3_2:79386234-79386253 | None:intergenic | 30.0% |
| TTATCAGCATCAACAATCAT+TGG | - | chr3_2:79386379-79386398 | None:intergenic | 30.0% | |
| ! | GATTTGGTTATTGATGTTGT+TGG | - | chr3_2:79386548-79386567 | None:intergenic | 30.0% |
| GAAGACAATAACTTGAAAGT+TGG | + | chr3_2:79387032-79387051 | Msa0428460:CDS | 30.0% | |
| CTTTCCAAGTTCATATATTC+AGG | + | chr3_2:79387096-79387115 | Msa0428460:CDS | 30.0% | |
| ATGATCTTGAAGAAGTGAAC+TGG | - | chr3_2:79384423-79384442 | None:intergenic | 35.0% | |
| CTTACTCAAAACCTTCATCA+AGG | + | chr3_2:79384444-79384463 | Msa0428460:CDS | 35.0% | |
| TTACAAGCTTTCCTTGATGA+AGG | - | chr3_2:79384458-79384477 | None:intergenic | 35.0% | |
| !! | TTTAACTTGCTCTGGAAGAA+TGG | + | chr3_2:79384942-79384961 | Msa0428460:intron | 35.0% |
| ! | CTCTTCTTAAGCTTTTCTTG+TGG | + | chr3_2:79385074-79385093 | Msa0428460:intron | 35.0% |
| ! | TTAAGCTTTTCTTGTGGACT+AGG | + | chr3_2:79385080-79385099 | Msa0428460:intron | 35.0% |
| ! | AATTCGGCCTTCTTTGTTTA+GGG | + | chr3_2:79385134-79385153 | Msa0428460:intron | 35.0% |
| TGAATTGCCCTAAACAAAGA+AGG | - | chr3_2:79385144-79385163 | None:intergenic | 35.0% | |
| ! | GTAGATGTTGTCTAAAGTAG+TGG | + | chr3_2:79385200-79385219 | Msa0428460:intron | 35.0% |
| AGACTCCAAATGGTGTAAAT+TGG | + | chr3_2:79385339-79385358 | Msa0428460:CDS | 35.0% | |
| CAAAGATGTGCACATGAAAA+AGG | - | chr3_2:79385484-79385503 | None:intergenic | 35.0% | |
| AAAAAGGTCTTCAACTGTCA+AGG | + | chr3_2:79385551-79385570 | Msa0428460:CDS | 35.0% | |
| ACTACTGCTTCCAATTTCAA+AGG | - | chr3_2:79385636-79385655 | None:intergenic | 35.0% | |
| GCAGTAGTTGTGTTAATGTT+TGG | + | chr3_2:79385648-79385667 | Msa0428460:CDS | 35.0% | |
| CGTACATCATATTGACAGAA+AGG | + | chr3_2:79385688-79385707 | Msa0428460:CDS | 35.0% | |
| CATATTGACAGAAAGGGAAA+AGG | + | chr3_2:79385695-79385714 | Msa0428460:CDS | 35.0% | |
| ATGTACCTCATGTTAACTCT+AGG | + | chr3_2:79385815-79385834 | Msa0428460:intron | 35.0% | |
| TAACTCTAGGTATAACCATG+TGG | + | chr3_2:79385828-79385847 | Msa0428460:intron | 35.0% | |
| ATAACCATGTGGAAAATGAC+TGG | + | chr3_2:79385839-79385858 | Msa0428460:intron | 35.0% | |
| ! | TCACGTATAAGTGAGTTGAA+CGG | - | chr3_2:79386205-79386224 | None:intergenic | 35.0% |
| ! | GTTTTCCTGCAAAATCGAAA+TGG | - | chr3_2:79386357-79386376 | None:intergenic | 35.0% |
| TGCAACTTACCAGAAGAAAA+TGG | - | chr3_2:79386486-79386505 | None:intergenic | 35.0% | |
| ! | CATTTGCCTTTTCTTTTGCT+TGG | + | chr3_2:79386841-79386860 | Msa0428460:intron | 35.0% |
| TTCAAATCTTAGTCCTGTGT+GGG | - | chr3_2:79386985-79387004 | None:intergenic | 35.0% | |
| CTAAGATTTGAACTCTCAAG+TGG | + | chr3_2:79386993-79387012 | Msa0428460:CDS | 35.0% | |
| TCTCCCTGAATATATGAACT+TGG | - | chr3_2:79387103-79387122 | None:intergenic | 35.0% | |
| TGATGTAGTCAGCTGCAATA+TGG | - | chr3_2:79384968-79384987 | None:intergenic | 40.0% | |
| !! | TTGTGGACTAGGAAAGCTAT+GGG | + | chr3_2:79385091-79385110 | Msa0428460:intron | 40.0% |
| ! | CAATTCGGCCTTCTTTGTTT+AGG | + | chr3_2:79385133-79385152 | Msa0428460:intron | 40.0% |
| ! | TTGTTTAGGGCAATTCAAGC+TGG | + | chr3_2:79385147-79385166 | Msa0428460:intron | 40.0% |
| ! | TGTTTAGGGCAATTCAAGCT+GGG | + | chr3_2:79385148-79385167 | Msa0428460:intron | 40.0% |
| GATGATGCCAAGAAAGTTTG+TGG | + | chr3_2:79385277-79385296 | Msa0428460:intron | 40.0% | |
| ! | GAGTATCATTCTCTAGCTCA+TGG | + | chr3_2:79385425-79385444 | Msa0428460:CDS | 40.0% |
| !! | CATCTTTGATAAGAGTGCCT+TGG | + | chr3_2:79385496-79385515 | Msa0428460:intron | 40.0% |
| CAAAGGGCTATTTATCTCCA+AGG | - | chr3_2:79385516-79385535 | None:intergenic | 40.0% | |
| !! | GCTAACTCCTCCTTTGAAAT+TGG | + | chr3_2:79385623-79385642 | Msa0428460:CDS | 40.0% |
| ACTGCTTCCAATTTCAAAGG+AGG | - | chr3_2:79385633-79385652 | None:intergenic | 40.0% | |
| !! | AATGCCAGTCATTTTCCACA+TGG | - | chr3_2:79385846-79385865 | None:intergenic | 40.0% |
| ! | TTGTGTGTTTGGTTTCACAG+TGG | + | chr3_2:79385870-79385889 | Msa0428460:intron | 40.0% |
| ! | TGTGTGTTTGGTTTCACAGT+GGG | + | chr3_2:79385871-79385890 | Msa0428460:intron | 40.0% |
| ! | GTGTTCCATTTCGATTTTGC+AGG | + | chr3_2:79386349-79386368 | Msa0428460:intron | 40.0% |
| !! | TCCATCCTTTGTTGTTGTCA+TGG | + | chr3_2:79386441-79386460 | Msa0428460:CDS | 40.0% |
| !! | CCATCCTTTGTTGTTGTCAT+GGG | + | chr3_2:79386442-79386461 | Msa0428460:CDS | 40.0% |
| AGTCTGCCAAGCAAAAGAAA+AGG | - | chr3_2:79386850-79386869 | None:intergenic | 40.0% | |
| CAGACTATACCGTCTATGTT+CGG | + | chr3_2:79386864-79386883 | Msa0428460:intron | 40.0% | |
| TGTCTCTTACCGAACATAGA+CGG | - | chr3_2:79386876-79386895 | None:intergenic | 40.0% | |
| AAGTGTCAAATGGCAGAGTT+TGG | + | chr3_2:79386934-79386953 | Msa0428460:CDS | 40.0% | |
| GTTCAAATCTTAGTCCTGTG+TGG | - | chr3_2:79386986-79387005 | None:intergenic | 40.0% | |
| GATTTGAACTCTCAAGTGGA+TGG | + | chr3_2:79386997-79387016 | Msa0428460:CDS | 40.0% | |
| !! | CTTGTGGACTAGGAAAGCTA+TGG | + | chr3_2:79385090-79385109 | Msa0428460:intron | 45.0% |
| CCGAATTGAGTAAACAGGTC+GGG | - | chr3_2:79385121-79385140 | None:intergenic | 45.0% | |
| CCCGACCTGTTTACTCAATT+CGG | + | chr3_2:79385118-79385137 | Msa0428460:intron | 45.0% | |
| GCCGAATTGAGTAAACAGGT+CGG | - | chr3_2:79385122-79385141 | None:intergenic | 45.0% | |
| GAAGGCCGAATTGAGTAAAC+AGG | - | chr3_2:79385126-79385145 | None:intergenic | 45.0% | |
| ! | GTGTGTTTGGTTTCACAGTG+GGG | + | chr3_2:79385872-79385891 | Msa0428460:intron | 45.0% |
| CCATTTCACGTTCAACTCAG+CGG | + | chr3_2:79386083-79386102 | Msa0428460:intron | 45.0% | |
| CCCATGACAACAACAAAGGA+TGG | - | chr3_2:79386445-79386464 | None:intergenic | 45.0% | |
| TGCACCCATGACAACAACAA+AGG | - | chr3_2:79386449-79386468 | None:intergenic | 45.0% | |
| ! | CGTTGAGCACCATTTTCTTC+TGG | + | chr3_2:79386474-79386493 | Msa0428460:CDS | 45.0% |
| !! | ATCCTGATTCGGTACTTTGC+AGG | - | chr3_2:79386960-79386979 | None:intergenic | 45.0% |
| !!! | TTTTTTATGTTTATAAAAAT+TGG | - | chr3_2:79386305-79386324 | None:intergenic | 5.0% |
| GATGGTACATGCTACTACCG+TGG | - | chr3_2:79384861-79384880 | None:intergenic | 50.0% | |
| TTAGGGCAATTCAAGCTGGG+CGG | + | chr3_2:79385151-79385170 | Msa0428460:intron | 50.0% | |
| ACAGTGGGGAGAGTCAAAAG+TGG | + | chr3_2:79385886-79385905 | Msa0428460:intron | 50.0% | |
| ! | CCGCTGAGTTGAACGTGAAA+TGG | - | chr3_2:79386086-79386105 | None:intergenic | 50.0% |
| CTGTGTGGGACATCCTGATT+CGG | - | chr3_2:79386971-79386990 | None:intergenic | 50.0% | |
| GGACTAGGAAAGCTATGGGC+TGG | + | chr3_2:79385095-79385114 | Msa0428460:intron | 55.0% | |
| TAGGGCAATTCAAGCTGGGC+GGG | + | chr3_2:79385152-79385171 | Msa0428460:intron | 55.0% | |
| !! | GGCCTGCAAAGTACCGAATC+AGG | + | chr3_2:79386955-79386974 | Msa0428460:CDS | 55.0% |
| CGAATCAGGATGTCCCACAC+AGG | + | chr3_2:79386969-79386988 | Msa0428460:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 79384383 | 79387205 | 79384383 | ID=Msa0428460;Name=Msa0428460 |
| chr3_2 | mRNA | 79384383 | 79387205 | 79384383 | ID=Msa0428460-mRNA-1;Parent=Msa0428460;Name=Msa0428460-mRNA-1;_AED=0.15;_eAED=0.15;_QI=10|0|0|0.8|0.75|0.6|5|0|312 |
| chr3_2 | exon | 79384383 | 79384473 | 79384383 | ID=Msa0428460-mRNA-1:exon:21392;Parent=Msa0428460-mRNA-1 |
| chr3_2 | exon | 79385278 | 79385490 | 79385278 | ID=Msa0428460-mRNA-1:exon:21393;Parent=Msa0428460-mRNA-1 |
| chr3_2 | exon | 79385509 | 79385716 | 79385509 | ID=Msa0428460-mRNA-1:exon:21394;Parent=Msa0428460-mRNA-1 |
| chr3_2 | exon | 79386401 | 79386495 | 79386401 | ID=Msa0428460-mRNA-1:exon:21395;Parent=Msa0428460-mRNA-1 |
| chr3_2 | exon | 79386867 | 79387205 | 79386867 | ID=Msa0428460-mRNA-1:exon:21396;Parent=Msa0428460-mRNA-1 |
| chr3_2 | five_prime_UTR | 79384383 | 79384392 | 79384383 | ID=Msa0428460-mRNA-1:five_prime_utr;Parent=Msa0428460-mRNA-1 |
| chr3_2 | CDS | 79384393 | 79384473 | 79384393 | ID=Msa0428460-mRNA-1:cds;Parent=Msa0428460-mRNA-1 |
| chr3_2 | CDS | 79385278 | 79385490 | 79385278 | ID=Msa0428460-mRNA-1:cds;Parent=Msa0428460-mRNA-1 |
| chr3_2 | CDS | 79385509 | 79385716 | 79385509 | ID=Msa0428460-mRNA-1:cds;Parent=Msa0428460-mRNA-1 |
| chr3_2 | CDS | 79386401 | 79386495 | 79386401 | ID=Msa0428460-mRNA-1:cds;Parent=Msa0428460-mRNA-1 |
| chr3_2 | CDS | 79386867 | 79387205 | 79386867 | ID=Msa0428460-mRNA-1:cds;Parent=Msa0428460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
