AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0428480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0428480 MtrunA17_Chr3g0131911 92.946 241 16 1 1 240 1 241 9.12e-145 404
Msa0428480 MtrunA17_Chr8g0385991 68.932 206 50 4 1 205 1 193 5.12e-99 288
Msa0428480 MtrunA17_Chr7g0214071 62.570 179 54 6 1 177 1 168 1.18e-72 222
Msa0428480 MtrunA17_Chr7g0252971 48.810 168 76 4 12 171 6 171 2.46e-50 167
Msa0428480 MtrunA17_Chr5g0417791 50.000 160 71 4 14 170 3 156 3.27e-49 162
Msa0428480 MtrunA17_Chr3g0124761 46.486 185 84 6 13 194 6 178 4.55e-49 162
Msa0428480 MtrunA17_Chr4g0042561 47.879 165 77 4 10 171 5 163 9.71e-49 161
Msa0428480 MtrunA17_Chr2g0318101 49.425 174 75 5 14 176 15 186 1.39e-48 163
Msa0428480 MtrunA17_Chr8g0384721 48.780 164 74 4 10 170 3 159 2.82e-48 160
Msa0428480 MtrunA17_Chr4g0047841 46.667 180 74 4 13 172 14 191 3.39e-47 159
Msa0428480 MtrunA17_Chr2g0326361 50.877 171 70 6 14 181 14 173 2.00e-46 157
Msa0428480 MtrunA17_Chr7g0263931 48.125 160 76 4 13 169 10 165 1.08e-45 155
Msa0428480 MtrunA17_Chr8g0359921 49.390 164 70 5 14 173 14 168 2.04e-45 154
Msa0428480 MtrunA17_Chr2g0318081 49.383 162 69 4 14 172 16 167 5.17e-45 154
Msa0428480 MtrunA17_Chr3g0130731 45.732 164 78 4 10 170 3 158 2.00e-44 150
Msa0428480 MtrunA17_Chr2g0311651 39.336 211 101 5 6 189 13 223 8.29e-44 149
Msa0428480 MtrunA17_Chr4g0056541 43.931 173 79 5 9 175 2 162 2.03e-43 150
Msa0428480 MtrunA17_Chr8g0372121 45.455 165 72 4 14 172 6 158 2.43e-43 148
Msa0428480 MtrunA17_Chr4g0018391 46.429 168 72 6 9 170 2 157 4.14e-43 149
Msa0428480 MtrunA17_Chr5g0442771 46.875 160 78 4 16 169 20 178 7.07e-43 147
Msa0428480 MtrunA17_Chr8g0346001 44.186 172 81 5 9 170 10 176 4.58e-42 148
Msa0428480 MtrunA17_Chr5g0405211 46.988 166 70 5 14 173 8 161 5.60e-42 146
Msa0428480 MtrunA17_Chr5g0398971 45.882 170 72 6 9 170 2 159 7.77e-42 145
Msa0428480 MtrunA17_Chr3g0109821 47.531 162 69 5 14 169 6 157 7.91e-42 150
Msa0428480 MtrunA17_Chr2g0309331 44.118 170 78 6 10 173 6 164 8.09e-42 145
Msa0428480 MtrunA17_Chr5g0433781 45.963 161 72 4 14 169 6 156 8.18e-42 150
Msa0428480 MtrunA17_Chr8g0361731 40.984 183 100 4 1 177 1 181 2.56e-41 145
Msa0428480 MtrunA17_Chr3g0139331 43.827 162 78 4 14 172 11 162 3.50e-41 144
Msa0428480 MtrunA17_Chr2g0311661 38.389 211 108 5 16 204 23 233 3.59e-41 142
Msa0428480 MtrunA17_Chr1g0200561 44.444 171 77 5 14 178 19 177 5.30e-41 143
Msa0428480 MtrunA17_Chr5g0417001 38.462 208 112 5 1 194 1 206 9.51e-41 144
Msa0428480 MtrunA17_Chr5g0428991 44.910 167 77 4 13 174 24 180 1.41e-40 147
Msa0428480 MtrunA17_Chr3g0128151 44.910 167 77 4 14 175 22 178 1.93e-40 146
Msa0428480 MtrunA17_Chr1g0147421 37.273 220 107 8 14 220 27 228 2.42e-40 142
Msa0428480 MtrunA17_Chr5g0400461 42.938 177 83 6 10 177 2 169 3.23e-40 141
Msa0428480 MtrunA17_Chr3g0091921 44.444 162 79 5 14 172 16 169 3.99e-40 140
Msa0428480 MtrunA17_Chr6g0453131 41.243 177 95 4 2 172 3 176 4.51e-40 142
Msa0428480 MtrunA17_Chr4g0060931 44.654 159 77 5 14 169 17 167 4.87e-40 141
Msa0428480 MtrunA17_Chr6g0484441 42.767 159 76 4 14 169 5 151 7.33e-40 140
Msa0428480 MtrunA17_Chr6g0481091 39.196 199 97 7 14 198 6 194 8.88e-40 137
Msa0428480 MtrunA17_Chr2g0316971 43.478 161 82 5 12 169 21 175 1.01e-39 140
Msa0428480 MtrunA17_Chr3g0128111 42.683 164 79 4 17 175 45 198 1.38e-39 137
Msa0428480 MtrunA17_Chr7g0253011 39.487 195 103 7 1 185 1 190 3.95e-39 139
Msa0428480 MtrunA17_Chr4g0017921 44.172 163 72 5 14 170 8 157 6.43e-39 138
Msa0428480 MtrunA17_Chr2g0309891 43.478 161 77 4 14 169 6 157 1.62e-38 137
Msa0428480 MtrunA17_Chr4g0054791 46.061 165 76 6 10 169 3 159 1.97e-38 135
Msa0428480 MtrunA17_Chr6g0453451 43.558 163 75 5 13 169 19 170 4.72e-38 135
Msa0428480 MtrunA17_Chr3g0130101 41.916 167 82 4 16 177 9 165 2.01e-37 134
Msa0428480 MtrunA17_Chr6g0461661 42.424 165 84 6 14 175 18 174 3.83e-37 134
Msa0428480 MtrunA17_Chr4g0076731 42.683 164 78 5 16 176 56 206 4.81e-37 134
Msa0428480 MtrunA17_Chr1g0183741 40.828 169 85 5 7 172 3 159 9.00e-37 130
Msa0428480 MtrunA17_Chr4g0038751 48.438 128 62 3 16 140 17 143 1.09e-35 128
Msa0428480 MtrunA17_Chr1g0197361 41.176 170 79 6 16 177 10 166 4.02e-35 131
Msa0428480 MtrunA17_Chr8g0364791 39.412 170 88 4 13 177 5 164 4.57e-35 129
Msa0428480 MtrunA17_Chr3g0144271 45.205 146 74 4 8 149 17 160 5.42e-35 129
Msa0428480 MtrunA17_Chr7g0261411 41.463 164 81 5 7 167 3 154 9.99e-35 125
Msa0428480 MtrunA17_Chr1g0201021 41.317 167 83 4 16 177 21 177 1.03e-34 130
Msa0428480 MtrunA17_Chr2g0312321 39.264 163 85 5 12 171 9 160 2.92e-34 124
Msa0428480 MtrunA17_Chr1g0197351 43.195 169 87 3 14 177 42 206 7.66e-34 127
Msa0428480 MtrunA17_Chr8g0384201 38.824 170 89 4 13 177 5 164 8.86e-34 127
Msa0428480 MtrunA17_Chr7g0217721 38.068 176 93 4 7 170 12 183 1.24e-33 124
Msa0428480 MtrunA17_Chr3g0092671 41.520 171 77 7 16 177 7 163 1.24e-33 127
Msa0428480 MtrunA17_Chr7g0217711 41.781 146 78 3 7 149 12 153 1.17e-32 117
Msa0428480 MtrunA17_Chr8g0345671 41.509 159 73 7 14 166 11 155 8.99e-32 120
Msa0428480 MtrunA17_Chr8g0345691 39.752 161 77 6 13 167 11 157 1.02e-31 120
Msa0428480 MtrunA17_Chr4g0050701 36.196 163 91 5 14 173 11 163 4.27e-30 110
Msa0428480 MtrunA17_Chr2g0321631 39.264 163 84 5 15 168 5 161 1.25e-28 108
Msa0428480 MtrunA17_Chr4g0026141 40.361 166 79 7 14 168 5 161 1.86e-28 108
Msa0428480 MtrunA17_Chr7g0243371 52.688 93 37 2 48 140 6 91 1.97e-26 99.4
Msa0428480 MtrunA17_Chr8g0345741 42.373 118 60 4 27 139 5 119 7.65e-26 99.0
Msa0428480 MtrunA17_Chr7g0266701 33.333 168 97 5 14 171 4 166 9.98e-26 101
Msa0428480 MtrunA17_Chr3g0113001 47.222 108 50 2 63 170 17 117 3.69e-25 100
Msa0428480 MtrunA17_Chr8g0345711 37.313 134 75 5 14 141 12 142 1.52e-24 95.9
Msa0428480 MtrunA17_Chr2g0321741 39.815 108 58 2 34 138 13 116 5.52e-24 98.2
Msa0428480 MtrunA17_Chr8g0345721 33.939 165 71 5 17 146 38 199 7.67e-24 95.1
Msa0428480 MtrunA17_Chr8g0384351 32.934 167 81 6 13 177 9 146 2.83e-23 92.8
Msa0428480 MtrunA17_Chr8g0345731 36.567 134 75 5 14 139 24 155 1.01e-22 91.3
Msa0428480 MtrunA17_Chr3g0113031 46.316 95 45 3 76 170 5 93 9.27e-22 90.9
Msa0428480 MtrunA17_Chr8g0345701 32.886 149 75 7 11 139 4 147 4.39e-19 81.6
Msa0428480 MtrunA17_Chr3g0130321 30.952 168 89 7 13 167 6 159 4.63e-18 79.7
Msa0428480 MtrunA17_Chr2g0282871 30.822 146 77 7 14 140 53 193 3.22e-12 65.1
Msa0428480 MtrunA17_Chr7g0251651 28.986 138 87 5 6 138 10 141 3.26e-12 63.5
Msa0428480 MtrunA17_Chr4g0040541 29.592 196 103 8 14 188 48 229 4.79e-12 64.3
Msa0428480 MtrunA17_Chr7g0274971 30.645 186 103 10 20 192 11 183 4.96e-12 63.2
Msa0428480 MtrunA17_Chr7g0251661 29.197 137 86 5 7 138 3 133 1.97e-11 60.5
Msa0428480 MtrunA17_Chr2g0324961 32.192 146 75 7 14 140 49 189 2.16e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0428480 AT5G13180.1 51.364 220 79 6 1 202 1 210 1.33e-67 209
Msa0428480 AT2G33480.1 57.714 175 61 6 1 173 1 164 5.76e-63 198
Msa0428480 AT2G33480.2 56.571 175 61 5 1 173 1 162 1.25e-62 197
Msa0428480 AT3G04070.2 49.419 172 82 4 8 174 4 175 1.56e-52 173
Msa0428480 AT1G77450.1 46.561 189 83 6 6 184 1 181 4.07e-51 167
Msa0428480 AT1G01720.1 38.938 226 124 6 13 235 6 220 2.29e-50 166
Msa0428480 AT1G69490.1 47.429 175 79 5 12 179 7 175 4.21e-49 162
Msa0428480 AT3G04070.1 45.745 188 81 5 8 174 4 191 6.14e-49 164
Msa0428480 AT1G61110.1 48.588 177 69 5 10 172 12 180 8.15e-48 160
Msa0428480 AT5G08790.1 50.000 160 71 4 14 170 7 160 4.87e-47 157
Msa0428480 AT4G17980.1 46.667 165 77 4 10 169 2 160 7.72e-46 154
Msa0428480 AT4G27410.2 47.799 159 70 4 14 169 14 162 9.20e-46 154
Msa0428480 AT4G17980.2 46.667 165 77 4 10 169 2 160 3.34e-45 153
Msa0428480 AT5G63790.1 48.125 160 74 4 14 170 50 203 6.12e-45 153
Msa0428480 AT3G15510.1 48.750 160 72 4 18 169 21 178 7.45e-45 154
Msa0428480 AT5G63790.2 48.125 160 74 4 14 170 60 213 7.47e-45 153
Msa0428480 AT3G15500.1 45.304 181 82 5 14 191 14 180 1.06e-44 152
Msa0428480 AT5G46590.1 45.556 180 77 5 10 184 2 165 1.10e-44 152
Msa0428480 AT1G52890.1 48.765 162 70 4 14 172 14 165 1.48e-44 152
Msa0428480 AT1G12260.2 45.349 172 76 5 9 174 2 161 2.10e-44 152
Msa0428480 AT5G39610.1 48.148 162 69 6 14 170 20 171 4.39e-44 150
Msa0428480 AT1G12260.1 45.349 172 76 5 9 174 2 161 6.80e-44 152
Msa0428480 AT5G39820.1 44.186 172 76 4 16 169 22 191 1.72e-43 150
Msa0428480 AT1G62700.1 46.429 168 72 5 9 170 2 157 2.42e-43 150
Msa0428480 AT1G62700.2 46.429 168 72 5 9 170 2 157 2.42e-43 150
Msa0428480 AT4G27410.3 44.318 176 68 5 14 169 14 179 3.84e-43 148
Msa0428480 AT3G10490.1 45.455 165 74 5 11 169 24 178 5.62e-43 145
Msa0428480 AT3G10480.2 45.732 164 74 4 11 169 24 177 6.72e-43 150
Msa0428480 AT5G46590.2 48.701 154 69 4 10 158 2 150 8.40e-43 146
Msa0428480 AT5G66300.1 40.889 225 109 10 14 230 12 220 1.77e-42 146
Msa0428480 AT1G65910.1 47.205 161 70 4 14 169 6 156 2.07e-42 152
Msa0428480 AT4G36160.2 44.318 176 80 5 1 170 1 164 2.11e-42 148
Msa0428480 AT5G62380.2 42.604 169 79 4 12 174 5 161 2.21e-42 147
Msa0428480 AT5G62380.1 42.604 169 79 4 12 174 5 161 2.21e-42 147
Msa0428480 AT4G36160.1 46.626 163 69 5 14 170 10 160 2.51e-42 147
Msa0428480 AT4G36160.3 46.626 163 69 5 14 170 10 160 2.51e-42 147
Msa0428480 AT1G52880.1 48.125 160 78 3 18 172 21 180 2.63e-42 146
Msa0428480 AT1G33060.1 46.584 161 71 4 14 169 24 174 3.28e-42 152
Msa0428480 AT1G33060.2 46.584 161 71 4 14 169 24 174 4.05e-42 151
Msa0428480 AT2G46770.1 43.182 176 81 6 9 170 11 181 5.75e-42 146
Msa0428480 AT3G10480.1 46.061 165 73 5 11 169 24 178 6.89e-42 148
Msa0428480 AT5G07680.2 45.912 159 75 5 14 169 3 153 7.01e-42 145
Msa0428480 AT5G07680.1 45.912 159 75 5 14 169 17 167 7.03e-42 145
Msa0428480 AT5G61430.1 45.912 159 75 5 14 169 16 166 1.22e-41 145
Msa0428480 AT2G18060.3 46.012 163 70 5 14 170 9 159 1.37e-41 145
Msa0428480 AT2G18060.1 46.012 163 70 5 14 170 9 159 1.37e-41 145
Msa0428480 AT3G10490.2 45.455 165 74 5 11 169 24 178 2.37e-41 147
Msa0428480 AT1G79580.3 45.509 167 73 6 10 170 13 167 5.23e-41 144
Msa0428480 AT1G79580.5 45.509 167 73 6 10 170 13 167 5.23e-41 144
Msa0428480 AT1G79580.4 45.509 167 73 6 10 170 13 167 5.23e-41 144
Msa0428480 AT1G79580.2 45.509 167 73 6 10 170 13 167 5.23e-41 144
Msa0428480 AT1G79580.1 45.509 167 73 6 10 170 13 167 5.23e-41 144
Msa0428480 AT3G03200.1 45.963 161 73 6 14 169 6 157 5.73e-41 146
Msa0428480 AT1G32770.1 42.222 180 86 6 3 170 5 178 7.62e-41 143
Msa0428480 AT1G33280.1 44.172 163 72 4 14 170 8 157 9.14e-41 142
Msa0428480 AT3G61910.1 41.111 180 87 6 4 169 1 175 9.36e-41 142
Msa0428480 AT4G35580.3 44.643 168 74 5 14 174 9 164 9.83e-41 146
Msa0428480 AT5G17260.1 45.679 162 72 5 14 169 6 157 1.01e-40 145
Msa0428480 AT1G71930.2 44.643 168 75 5 12 173 7 162 1.14e-40 142
Msa0428480 AT1G71930.1 44.643 168 75 5 12 173 7 162 1.14e-40 142
Msa0428480 AT4G35580.2 44.643 168 74 5 14 174 9 164 1.15e-40 146
Msa0428480 AT4G35580.1 46.012 163 69 5 14 169 9 159 1.17e-40 146
Msa0428480 AT4G10350.1 43.558 163 76 4 14 170 9 161 2.04e-40 142
Msa0428480 AT1G32510.1 44.509 173 83 4 11 175 3 170 3.64e-40 140
Msa0428480 AT3G04060.1 43.636 165 71 5 14 169 20 171 4.65e-40 141
Msa0428480 AT1G76420.1 43.452 168 77 6 14 174 22 178 7.25e-40 140
Msa0428480 AT3G17730.1 44.099 161 75 5 14 169 6 156 1.18e-39 137
Msa0428480 AT1G26870.1 45.062 162 81 4 14 169 16 175 1.88e-39 141
Msa0428480 AT2G24430.2 42.138 159 80 4 14 169 16 165 3.94e-39 138
Msa0428480 AT2G24430.1 42.138 159 80 4 14 169 16 165 3.94e-39 138
Msa0428480 AT3G18400.1 43.396 159 76 5 14 169 5 152 9.49e-39 137
Msa0428480 AT5G18270.1 44.025 159 79 5 14 169 21 172 1.00e-38 137
Msa0428480 AT5G18270.2 44.025 159 79 5 14 169 21 172 1.00e-38 137
Msa0428480 AT2G17040.1 42.500 160 77 5 16 172 8 155 1.91e-38 135
Msa0428480 AT3G29035.1 49.231 130 59 3 14 140 24 149 3.37e-38 135
Msa0428480 AT2G43000.1 46.497 157 72 6 16 169 20 167 3.46e-38 134
Msa0428480 AT5G24590.2 37.555 229 123 8 14 234 13 229 3.83e-38 138
Msa0428480 AT1G54330.1 40.994 161 77 4 14 169 6 153 6.38e-38 134
Msa0428480 AT2G02450.1 42.683 164 78 6 16 176 53 203 1.65e-37 135
Msa0428480 AT2G02450.2 42.683 164 78 6 16 176 53 203 2.91e-37 135
Msa0428480 AT3G12977.1 40.994 161 79 6 14 169 18 167 4.33e-37 132
Msa0428480 AT3G10500.1 41.808 177 84 5 8 177 3 167 5.52e-37 136
Msa0428480 AT3G10480.3 39.394 198 71 6 11 169 24 211 8.25e-37 135
Msa0428480 AT1G56010.2 37.500 168 92 5 12 174 17 176 1.16e-36 132
Msa0428480 AT5G53950.1 42.767 159 82 5 14 169 17 169 1.34e-36 132
Msa0428480 AT3G15170.1 38.323 167 82 5 12 169 18 172 4.62e-36 130
Msa0428480 AT3G49530.2 39.506 162 84 4 14 170 13 165 1.46e-35 130
Msa0428480 AT3G49530.1 39.506 162 84 4 14 170 13 165 3.23e-35 130
Msa0428480 AT1G34190.1 40.719 167 84 4 16 177 18 174 5.18e-35 131
Msa0428480 AT5G04410.1 38.857 175 92 4 8 177 3 167 7.04e-35 131
Msa0428480 AT2G33480.3 53.448 116 43 4 58 173 3 107 1.63e-34 123
Msa0428480 AT3G12910.1 41.463 164 85 5 16 169 23 185 2.40e-34 125
Msa0428480 AT1G34180.3 40.120 167 85 4 16 177 18 174 5.08e-34 127
Msa0428480 AT1G34180.1 40.120 167 85 4 16 177 18 174 1.46e-33 127
Msa0428480 AT5G09330.5 40.462 173 88 4 10 177 2 164 2.90e-33 125
Msa0428480 AT5G09330.2 40.462 173 88 4 10 177 2 164 2.90e-33 125
Msa0428480 AT5G09330.4 40.462 173 88 4 10 177 2 164 2.90e-33 125
Msa0428480 AT5G09330.3 40.462 173 88 4 10 177 2 164 2.90e-33 125
Msa0428480 AT5G09330.1 40.462 173 88 4 10 177 2 164 2.90e-33 125
Msa0428480 AT1G34180.4 37.989 179 84 4 16 177 18 186 5.00e-33 124
Msa0428480 AT1G34180.2 37.989 179 84 4 16 177 18 186 1.29e-32 124
Msa0428480 AT4G28530.1 38.043 184 83 6 7 171 3 174 5.64e-32 120
Msa0428480 AT5G64060.1 38.182 165 87 4 10 169 2 156 2.49e-31 118
Msa0428480 AT3G44290.1 31.197 234 139 6 16 239 16 237 2.61e-29 112
Msa0428480 AT3G44290.2 37.956 137 77 3 16 148 16 148 2.85e-29 110
Msa0428480 AT5G04395.1 38.889 144 71 3 14 141 28 170 4.43e-29 108
Msa0428480 AT5G22290.1 39.394 132 72 3 11 138 18 145 9.27e-29 111
Msa0428480 AT2G27300.1 39.850 133 72 3 10 138 10 138 2.51e-28 110
Msa0428480 AT5G50820.1 36.571 175 99 6 5 175 7 173 5.20e-28 105
Msa0428480 AT1G32870.2 41.243 177 85 7 7 177 5 168 1.45e-27 110
Msa0428480 AT1G32870.1 41.243 177 85 7 7 177 5 168 1.63e-27 110
Msa0428480 AT1G32870.3 41.243 177 85 7 7 177 41 204 1.77e-27 110
Msa0428480 AT5G61430.2 46.729 107 49 3 63 169 5 103 5.61e-26 102
Msa0428480 AT4G10350.2 43.243 111 53 2 60 170 14 114 6.49e-25 100
Msa0428480 AT5G64530.1 35.632 174 87 7 14 176 3 162 8.89e-25 97.4
Msa0428480 AT3G12977.2 43.119 109 51 3 62 169 16 114 9.01e-25 98.2
Msa0428480 AT4G01520.1 43.066 137 68 6 15 143 5 139 1.19e-24 99.8
Msa0428480 AT4G01550.1 40.252 159 77 6 17 169 7 153 3.11e-24 100
Msa0428480 AT4G01540.2 42.963 135 67 6 17 143 7 139 3.18e-24 100
Msa0428480 AT1G56010.1 40.708 113 58 3 63 174 5 109 3.50e-24 97.4
Msa0428480 AT4G01540.4 42.963 135 67 6 17 143 7 139 3.58e-24 99.8
Msa0428480 AT4G01540.1 42.963 135 67 6 17 143 7 139 4.87e-24 100
Msa0428480 AT4G01540.3 42.963 135 67 6 17 143 7 139 6.16e-24 99.4
Msa0428480 AT5G64530.2 42.308 130 58 6 14 140 3 118 9.27e-24 94.0
Msa0428480 AT5G22380.1 33.000 200 114 7 11 197 2 194 6.25e-23 93.6
Msa0428480 AT3G44350.2 35.758 165 90 6 17 173 8 164 1.55e-22 92.8
Msa0428480 AT1G02230.1 38.776 147 76 6 15 154 4 143 2.66e-22 94.4
Msa0428480 AT3G44350.1 36.242 149 82 5 17 157 8 151 1.71e-21 87.8
Msa0428480 AT5G14000.1 30.233 172 104 4 5 173 6 164 2.58e-21 88.6
Msa0428480 AT3G10490.4 48.864 88 34 3 83 169 1 78 2.84e-21 91.3
Msa0428480 AT3G10490.3 48.864 88 34 3 83 169 1 78 2.84e-21 91.3
Msa0428480 AT5G14000.2 32.877 146 91 3 7 149 8 149 5.60e-21 86.7
Msa0428480 AT1G02250.1 34.591 159 83 7 15 166 4 148 4.24e-19 85.5
Msa0428480 AT2G43000.2 47.872 94 40 4 76 169 5 89 4.19e-18 79.7
Msa0428480 AT3G04420.2 37.681 138 69 6 15 142 4 134 4.13e-17 79.0
Msa0428480 AT3G04420.1 37.681 138 69 6 15 142 4 134 4.38e-17 79.3
Msa0428480 AT2G18060.2 45.122 82 33 2 89 170 2 71 7.77e-17 78.2
Msa0428480 AT1G01010.1 37.778 135 69 6 17 139 6 137 1.22e-16 79.0
Msa0428480 AT4G28530.2 37.719 114 52 3 7 101 3 116 6.62e-15 73.2
Msa0428480 AT3G56530.1 31.677 161 90 6 14 167 52 199 4.40e-14 70.9
Msa0428480 AT1G02220.1 33.548 155 80 6 15 155 4 149 2.35e-13 68.9
Msa0428480 AT1G28470.1 30.814 172 87 8 14 167 77 234 1.01e-12 67.0
Msa0428480 AT5G50820.2 31.304 115 73 2 63 175 14 124 3.44e-11 60.1
Msa0428480 AT5G56620.3 29.487 156 77 6 14 140 43 194 6.10e-11 62.0
Msa0428480 AT5G56620.2 29.487 156 77 6 14 140 43 194 6.44e-11 62.0
Msa0428480 AT5G56620.1 29.487 156 77 6 14 140 43 194 6.48e-11 62.0

Find 57 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTACTCTATTAAATTAATT+TGG 0.174987 3_2:+79392618 None:intergenic
TTTATGTCTATTGAGGAAAA+TGG 0.252211 3_2:-79391317 Msa0428480:three_prime_UTR
CAATTAACTTTGCAGATAAA+AGG 0.257603 3_2:+79391340 None:intergenic
GAACAACCAACTCTGGTTAT+TGG 0.282547 3_2:-79391950 Msa0428480:CDS
CCTTTGTGACTTGGTGGATT+TGG 0.295504 3_2:+79392597 None:intergenic
CAAATGGATCTCGAACTAAT+TGG 0.328762 3_2:-79391827 Msa0428480:CDS
TGAGAATGAGAAACATATAA+AGG 0.347214 3_2:+79392492 None:intergenic
CAAAACTATGGAAACGAGAT+AGG 0.347341 3_2:-79391617 Msa0428480:CDS
TGGGTGTATTTATATATAAC+AGG 0.355069 3_2:+79392468 None:intergenic
ATAAAGGGGACAATGCTTAC+TGG 0.376325 3_2:+79392508 None:intergenic
CTCATAAAATCAAAGAATCT+TGG 0.393607 3_2:+79391488 None:intergenic
CAATTAGTTCGAGATCCATT+TGG 0.399338 3_2:+79391828 None:intergenic
TTAATTGTTTATGTCTATTG+AGG 0.414525 3_2:-79391324 Msa0428480:three_prime_UTR
GAGAATGAGAAACATATAAA+GGG 0.416901 3_2:+79392493 None:intergenic
ATTAGTATTCATCACCGTAT+TGG 0.436278 3_2:+79391526 None:intergenic
AATTGAAGCAGGCAATTGAT+AGG 0.447214 3_2:+79392243 None:intergenic
AAAAGAAGTAATATAGAAAA+CGG 0.451498 3_2:-79391563 Msa0428480:CDS
TTCAGCCTCATACCTCAAAC+TGG 0.463030 3_2:-79392411 Msa0428480:five_prime_UTR
TTTGACCAGTTTGAGGTATG+AGG 0.466659 3_2:+79392406 None:intergenic
TCTGGTTATTGGAAGGCAAC+AGG 0.467118 3_2:-79391939 Msa0428480:CDS
AGAAACTACTGCTTGCAATC+AGG 0.467745 3_2:-79391775 Msa0428480:intron
AAGATACCTTTGTGACTTGG+TGG 0.482220 3_2:+79392591 None:intergenic
TATCAAGGAAAATCTCCAAA+TGG 0.482794 3_2:-79391843 Msa0428480:CDS
CAGTAGTTTCTAAGCTAACT+AGG 0.483639 3_2:+79391787 None:intergenic
ATGGAAACGAGATAGGGAAC+TGG 0.484070 3_2:-79391610 Msa0428480:CDS
CTAAGTACCTGGCAAATCCC+AGG 0.494406 3_2:+79392189 None:intergenic
TGAGGTATGAGGCTGAAGAT+AGG 0.502619 3_2:+79392417 None:intergenic
GTTTCTTCATCACTAAGTAA+TGG 0.512585 3_2:-79391897 Msa0428480:CDS
CGAATATGTATATACGTGCA+TGG 0.513077 3_2:+79392448 None:intergenic
ATCTCAGGAATAATTGAAGC+AGG 0.517678 3_2:+79392232 None:intergenic
TGCCTTCCAATAACCAGAGT+TGG 0.519375 3_2:+79391944 None:intergenic
TTTAAGATACCTTTGTGACT+TGG 0.524451 3_2:+79392588 None:intergenic
TACTTGCAGACATTGATCTC+AGG 0.525771 3_2:+79392217 None:intergenic
TCACTAAGTAATGGAATCGC+GGG 0.532891 3_2:-79391888 Msa0428480:CDS
TATGATCCCTGGGATTTGCC+AGG 0.534942 3_2:-79392196 Msa0428480:intron
TGGGTGCAGATGCAAAACTA+TGG 0.562905 3_2:-79391629 Msa0428480:intron
ATGTCTGCAAGTATGATCCC+TGG 0.565949 3_2:-79392207 Msa0428480:CDS
CTTAAAATGCAGTAAATGTG+TGG 0.567602 3_2:-79392571 Msa0428480:five_prime_UTR
GGTGCAAGCAGATTGCCTCC+TGG 0.573915 3_2:-79392325 Msa0428480:CDS
TAAGTATTTCTTCAGCAGCA+AGG 0.575313 3_2:-79392006 Msa0428480:CDS
ATGAACAGAACAACCAACTC+TGG 0.580063 3_2:-79391957 Msa0428480:CDS
AAGACGAGCTCTTCGTCCGT+TGG 0.580080 3_2:+79392289 None:intergenic
TGTCTGCAAGTATGATCCCT+GGG 0.580596 3_2:-79392206 Msa0428480:CDS
GAATATGTATATACGTGCAT+GGG 0.580727 3_2:+79392449 None:intergenic
AACCAACTCTGGTTATTGGA+AGG 0.581092 3_2:-79391946 Msa0428480:CDS
GAGGGTACACAACTCAGCTC+CGG 0.583774 3_2:-79391468 Msa0428480:CDS
ATCACTAAGTAATGGAATCG+CGG 0.598075 3_2:-79391889 Msa0428480:CDS
GTCTTGTTCAAGTTCGAGTG+AGG 0.604087 3_2:-79391417 Msa0428480:CDS
AAAACTATGGAAACGAGATA+GGG 0.606762 3_2:-79391616 Msa0428480:CDS
GGTGATGAATACTAATGTTG+AGG 0.614852 3_2:-79391519 Msa0428480:CDS
CCAAATCCACCAAGTCACAA+AGG 0.628851 3_2:-79392597 Msa0428480:five_prime_UTR
TAAGTACCTGGCAAATCCCA+GGG 0.629531 3_2:+79392190 None:intergenic
AGAATGAGAAACATATAAAG+GGG 0.633099 3_2:+79392494 None:intergenic
TGTGTGTAATTAGGAAATTG+TGG 0.633496 3_2:-79392038 Msa0428480:intron
TTACATGATGAAGACCAATA+CGG 0.642498 3_2:-79391540 Msa0428480:CDS
TGGAAACGAGATAGGGAACT+GGG 0.648812 3_2:-79391609 Msa0428480:CDS
TCTTCATCAGAAGAAAGATG+CGG 0.710283 3_2:-79391392 Msa0428480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAACCAAATTATTTATATA+TGG + chr3_2:79391839-79391858 None:intergenic 10.0%
!! TTAACCAAATTATTTATATA+TGG + chr3_2:79391839-79391858 None:intergenic 10.0%
!! ATAGCCATATATAAATAATT+TGG - chr3_2:79391832-79391851 Msa0428480:CDS 15.0%
!! AAAAGAAGTAATATAGAAAA+CGG - chr3_2:79392346-79392365 Msa0428480:CDS 15.0%
!! ATAGCCATATATAAATAATT+TGG - chr3_2:79391832-79391851 Msa0428480:CDS 15.0%
!! AAAAGAAGTAATATAGAAAA+CGG - chr3_2:79392346-79392365 Msa0428480:CDS 15.0%
!! GGTACTCTATTAAATTAATT+TGG + chr3_2:79391294-79391313 None:intergenic 20.0%
!!! AAAAGTCTTGTATTTTATCA+AGG - chr3_2:79392051-79392070 Msa0428480:intron 20.0%
!! AGGACTATATATATGATTAA+TGG + chr3_2:79392171-79392190 None:intergenic 20.0%
!!! AAGATTCTTTGATTTTATGA+GGG - chr3_2:79392423-79392442 Msa0428480:five_prime_UTR 20.0%
!! TTAATTGTTTATGTCTATTG+AGG - chr3_2:79392585-79392604 Msa0428480:five_prime_UTR 20.0%
!! GGTACTCTATTAAATTAATT+TGG + chr3_2:79391294-79391313 None:intergenic 20.0%
!!! AAAAGTCTTGTATTTTATCA+AGG - chr3_2:79392051-79392070 Msa0428480:intron 20.0%
!! AGGACTATATATATGATTAA+TGG + chr3_2:79392171-79392190 None:intergenic 20.0%
!!! AAGATTCTTTGATTTTATGA+GGG - chr3_2:79392423-79392442 Msa0428480:five_prime_UTR 20.0%
!! TTAATTGTTTATGTCTATTG+AGG - chr3_2:79392585-79392604 Msa0428480:five_prime_UTR 20.0%
! AGAATGAGAAACATATAAAG+GGG + chr3_2:79391418-79391437 None:intergenic 25.0%
! GAGAATGAGAAACATATAAA+GGG + chr3_2:79391419-79391438 None:intergenic 25.0%
! TGAGAATGAGAAACATATAA+AGG + chr3_2:79391420-79391439 None:intergenic 25.0%
! TGGGTGTATTTATATATAAC+AGG + chr3_2:79391444-79391463 None:intergenic 25.0%
!!! AAGAGAAAGTTTTAAGCAAA+TGG - chr3_2:79391538-79391557 Msa0428480:CDS 25.0%
!! AAGCTGAATTTTGTGAAAAA+TGG - chr3_2:79391563-79391582 Msa0428480:CDS 25.0%
!! TTTTATGTGTGTGTGTAATT+AGG - chr3_2:79391862-79391881 Msa0428480:CDS 25.0%
! CTCATAAAATCAAAGAATCT+TGG + chr3_2:79392424-79392443 None:intergenic 25.0%
!!! CAAGATTCTTTGATTTTATG+AGG - chr3_2:79392422-79392441 Msa0428480:five_prime_UTR 25.0%
! ATATAGAAAAATGAGCAGTA+GGG + chr3_2:79392468-79392487 None:intergenic 25.0%
! CAATTAACTTTGCAGATAAA+AGG + chr3_2:79392572-79392591 None:intergenic 25.0%
! TTTATGTCTATTGAGGAAAA+TGG - chr3_2:79392592-79392611 Msa0428480:five_prime_UTR 25.0%
! AGAATGAGAAACATATAAAG+GGG + chr3_2:79391418-79391437 None:intergenic 25.0%
! GAGAATGAGAAACATATAAA+GGG + chr3_2:79391419-79391438 None:intergenic 25.0%
! TGAGAATGAGAAACATATAA+AGG + chr3_2:79391420-79391439 None:intergenic 25.0%
! TGGGTGTATTTATATATAAC+AGG + chr3_2:79391444-79391463 None:intergenic 25.0%
!!! AAGAGAAAGTTTTAAGCAAA+TGG - chr3_2:79391538-79391557 Msa0428480:CDS 25.0%
!! AAGCTGAATTTTGTGAAAAA+TGG - chr3_2:79391563-79391582 Msa0428480:CDS 25.0%
!! TTTTATGTGTGTGTGTAATT+AGG - chr3_2:79391862-79391881 Msa0428480:CDS 25.0%
! CTCATAAAATCAAAGAATCT+TGG + chr3_2:79392424-79392443 None:intergenic 25.0%
!!! CAAGATTCTTTGATTTTATG+AGG - chr3_2:79392422-79392441 Msa0428480:five_prime_UTR 25.0%
! ATATAGAAAAATGAGCAGTA+GGG + chr3_2:79392468-79392487 None:intergenic 25.0%
! CAATTAACTTTGCAGATAAA+AGG + chr3_2:79392572-79392591 None:intergenic 25.0%
! TTTATGTCTATTGAGGAAAA+TGG - chr3_2:79392592-79392611 Msa0428480:five_prime_UTR 25.0%
! TTTAAGATACCTTTGTGACT+TGG + chr3_2:79391324-79391343 None:intergenic 30.0%
CTTAAAATGCAGTAAATGTG+TGG - chr3_2:79391338-79391357 Msa0428480:three_prime_UTR 30.0%
GAATATGTATATACGTGCAT+GGG + chr3_2:79391463-79391482 None:intergenic 30.0%
TGTGTGTAATTAGGAAATTG+TGG - chr3_2:79391871-79391890 Msa0428480:CDS 30.0%
GTTTCTTCATCACTAAGTAA+TGG - chr3_2:79392012-79392031 Msa0428480:CDS 30.0%
TATCAAGGAAAATCTCCAAA+TGG - chr3_2:79392066-79392085 Msa0428480:intron 30.0%
!! TTGTCACTTTGGTTGTAAAA+AGG + chr3_2:79392191-79392210 None:intergenic 30.0%
ATGCCTTAACTGTTAAATGT+TGG - chr3_2:79392260-79392279 Msa0428480:CDS 30.0%
TGCCTTAACTGTTAAATGTT+GGG - chr3_2:79392261-79392280 Msa0428480:CDS 30.0%
AAAACTATGGAAACGAGATA+GGG - chr3_2:79392293-79392312 Msa0428480:CDS 30.0%
TTACATGATGAAGACCAATA+CGG - chr3_2:79392369-79392388 Msa0428480:exon 30.0%
ATTAGTATTCATCACCGTAT+TGG + chr3_2:79392386-79392405 None:intergenic 30.0%
GATATAGAAAAATGAGCAGT+AGG + chr3_2:79392469-79392488 None:intergenic 30.0%
! TTTAAGATACCTTTGTGACT+TGG + chr3_2:79391324-79391343 None:intergenic 30.0%
CTTAAAATGCAGTAAATGTG+TGG - chr3_2:79391338-79391357 Msa0428480:three_prime_UTR 30.0%
GAATATGTATATACGTGCAT+GGG + chr3_2:79391463-79391482 None:intergenic 30.0%
TGTGTGTAATTAGGAAATTG+TGG - chr3_2:79391871-79391890 Msa0428480:CDS 30.0%
GTTTCTTCATCACTAAGTAA+TGG - chr3_2:79392012-79392031 Msa0428480:CDS 30.0%
TATCAAGGAAAATCTCCAAA+TGG - chr3_2:79392066-79392085 Msa0428480:intron 30.0%
!! TTGTCACTTTGGTTGTAAAA+AGG + chr3_2:79392191-79392210 None:intergenic 30.0%
ATGCCTTAACTGTTAAATGT+TGG - chr3_2:79392260-79392279 Msa0428480:CDS 30.0%
TGCCTTAACTGTTAAATGTT+GGG - chr3_2:79392261-79392280 Msa0428480:CDS 30.0%
AAAACTATGGAAACGAGATA+GGG - chr3_2:79392293-79392312 Msa0428480:CDS 30.0%
TTACATGATGAAGACCAATA+CGG - chr3_2:79392369-79392388 Msa0428480:exon 30.0%
ATTAGTATTCATCACCGTAT+TGG + chr3_2:79392386-79392405 None:intergenic 30.0%
GATATAGAAAAATGAGCAGT+AGG + chr3_2:79392469-79392488 None:intergenic 30.0%
CGAATATGTATATACGTGCA+TGG + chr3_2:79391464-79391483 None:intergenic 35.0%
!! TCTTGATTTTGACCAGTTTG+AGG + chr3_2:79391513-79391532 None:intergenic 35.0%
!!! TGGTTTTTGTTTTCAGCCAA+CGG - chr3_2:79391604-79391623 Msa0428480:CDS 35.0%
AATTGAAGCAGGCAATTGAT+AGG + chr3_2:79391669-79391688 None:intergenic 35.0%
ATCTCAGGAATAATTGAAGC+AGG + chr3_2:79391680-79391699 None:intergenic 35.0%
TAAGTATTTCTTCAGCAGCA+AGG - chr3_2:79391903-79391922 Msa0428480:CDS 35.0%
! ATCACTAAGTAATGGAATCG+CGG - chr3_2:79392020-79392039 Msa0428480:CDS 35.0%
CAATTAGTTCGAGATCCATT+TGG + chr3_2:79392084-79392103 None:intergenic 35.0%
CAAATGGATCTCGAACTAAT+TGG - chr3_2:79392082-79392101 Msa0428480:intron 35.0%
CAGTAGTTTCTAAGCTAACT+AGG + chr3_2:79392125-79392144 None:intergenic 35.0%
CACCCAACATTTAACAGTTA+AGG + chr3_2:79392266-79392285 None:intergenic 35.0%
CAAAACTATGGAAACGAGAT+AGG - chr3_2:79392292-79392311 Msa0428480:CDS 35.0%
GGTGATGAATACTAATGTTG+AGG - chr3_2:79392390-79392409 Msa0428480:five_prime_UTR 35.0%
TCTTCATCAGAAGAAAGATG+CGG - chr3_2:79392517-79392536 Msa0428480:five_prime_UTR 35.0%
ATGCTTGAGAATTGTTACTC+TGG - chr3_2:79392620-79392639 Msa0428480:five_prime_UTR 35.0%
CGAATATGTATATACGTGCA+TGG + chr3_2:79391464-79391483 None:intergenic 35.0%
!! TCTTGATTTTGACCAGTTTG+AGG + chr3_2:79391513-79391532 None:intergenic 35.0%
!!! TGGTTTTTGTTTTCAGCCAA+CGG - chr3_2:79391604-79391623 Msa0428480:CDS 35.0%
AATTGAAGCAGGCAATTGAT+AGG + chr3_2:79391669-79391688 None:intergenic 35.0%
ATCTCAGGAATAATTGAAGC+AGG + chr3_2:79391680-79391699 None:intergenic 35.0%
TAAGTATTTCTTCAGCAGCA+AGG - chr3_2:79391903-79391922 Msa0428480:CDS 35.0%
! ATCACTAAGTAATGGAATCG+CGG - chr3_2:79392020-79392039 Msa0428480:CDS 35.0%
CAATTAGTTCGAGATCCATT+TGG + chr3_2:79392084-79392103 None:intergenic 35.0%
CAAATGGATCTCGAACTAAT+TGG - chr3_2:79392082-79392101 Msa0428480:intron 35.0%
CAGTAGTTTCTAAGCTAACT+AGG + chr3_2:79392125-79392144 None:intergenic 35.0%
CACCCAACATTTAACAGTTA+AGG + chr3_2:79392266-79392285 None:intergenic 35.0%
CAAAACTATGGAAACGAGAT+AGG - chr3_2:79392292-79392311 Msa0428480:CDS 35.0%
GGTGATGAATACTAATGTTG+AGG - chr3_2:79392390-79392409 Msa0428480:five_prime_UTR 35.0%
TCTTCATCAGAAGAAAGATG+CGG - chr3_2:79392517-79392536 Msa0428480:five_prime_UTR 35.0%
! AAGATACCTTTGTGACTTGG+TGG + chr3_2:79391321-79391340 None:intergenic 40.0%
ATAAAGGGGACAATGCTTAC+TGG + chr3_2:79391404-79391423 None:intergenic 40.0%
! TTTGACCAGTTTGAGGTATG+AGG + chr3_2:79391506-79391525 None:intergenic 40.0%
GTTGGCTGAAAACAAAAACC+AGG + chr3_2:79391605-79391624 None:intergenic 40.0%
TACTTGCAGACATTGATCTC+AGG + chr3_2:79391695-79391714 None:intergenic 40.0%
ATGAACAGAACAACCAACTC+TGG - chr3_2:79391952-79391971 Msa0428480:CDS 40.0%
GAACAACCAACTCTGGTTAT+TGG - chr3_2:79391959-79391978 Msa0428480:CDS 40.0%
AACCAACTCTGGTTATTGGA+AGG - chr3_2:79391963-79391982 Msa0428480:CDS 40.0%
! TCACTAAGTAATGGAATCGC+GGG - chr3_2:79392021-79392040 Msa0428480:CDS 40.0%
AGAAACTACTGCTTGCAATC+AGG - chr3_2:79392134-79392153 Msa0428480:intron 40.0%
! CAATTCGGTCATTGTCACTT+TGG + chr3_2:79392202-79392221 None:intergenic 40.0%
CAAAGTGACAATGACCGAAT+TGG - chr3_2:79392200-79392219 Msa0428480:CDS 40.0%
! AAGATACCTTTGTGACTTGG+TGG + chr3_2:79391321-79391340 None:intergenic 40.0%
ATAAAGGGGACAATGCTTAC+TGG + chr3_2:79391404-79391423 None:intergenic 40.0%
! TTTGACCAGTTTGAGGTATG+AGG + chr3_2:79391506-79391525 None:intergenic 40.0%
GTTGGCTGAAAACAAAAACC+AGG + chr3_2:79391605-79391624 None:intergenic 40.0%
TACTTGCAGACATTGATCTC+AGG + chr3_2:79391695-79391714 None:intergenic 40.0%
ATGAACAGAACAACCAACTC+TGG - chr3_2:79391952-79391971 Msa0428480:CDS 40.0%
GAACAACCAACTCTGGTTAT+TGG - chr3_2:79391959-79391978 Msa0428480:CDS 40.0%
AACCAACTCTGGTTATTGGA+AGG - chr3_2:79391963-79391982 Msa0428480:CDS 40.0%
! TCACTAAGTAATGGAATCGC+GGG - chr3_2:79392021-79392040 Msa0428480:CDS 40.0%
AGAAACTACTGCTTGCAATC+AGG - chr3_2:79392134-79392153 Msa0428480:intron 40.0%
! CAATTCGGTCATTGTCACTT+TGG + chr3_2:79392202-79392221 None:intergenic 40.0%
CAAAGTGACAATGACCGAAT+TGG - chr3_2:79392200-79392219 Msa0428480:CDS 40.0%
!! CCTTTGTGACTTGGTGGATT+TGG + chr3_2:79391315-79391334 None:intergenic 45.0%
CCAAATCCACCAAGTCACAA+AGG - chr3_2:79391312-79391331 Msa0428480:three_prime_UTR 45.0%
TGAGGTATGAGGCTGAAGAT+AGG + chr3_2:79391495-79391514 None:intergenic 45.0%
TTCAGCCTCATACCTCAAAC+TGG - chr3_2:79391498-79391517 Msa0428480:CDS 45.0%
GGCTGAAAACAAAAACCAGG+AGG + chr3_2:79391602-79391621 None:intergenic 45.0%
ATGTCTGCAAGTATGATCCC+TGG - chr3_2:79391702-79391721 Msa0428480:intron 45.0%
TGTCTGCAAGTATGATCCCT+GGG - chr3_2:79391703-79391722 Msa0428480:intron 45.0%
TAAGTACCTGGCAAATCCCA+GGG + chr3_2:79391722-79391741 None:intergenic 45.0%
TGCCAGGTACTTAGCAAACT+AGG - chr3_2:79391729-79391748 Msa0428480:intron 45.0%
!! AGCCTAGTTTGCTAAGTACC+TGG + chr3_2:79391734-79391753 None:intergenic 45.0%
!!! GCGAGTGCTGTTTTGATACT+TGG + chr3_2:79391932-79391951 None:intergenic 45.0%
TGCCTTCCAATAACCAGAGT+TGG + chr3_2:79391968-79391987 None:intergenic 45.0%
TCTGGTTATTGGAAGGCAAC+AGG - chr3_2:79391970-79391989 Msa0428480:CDS 45.0%
TGCCACGATCTACTCCAATT+CGG + chr3_2:79392217-79392236 None:intergenic 45.0%
TGGGTGCAGATGCAAAACTA+TGG - chr3_2:79392280-79392299 Msa0428480:CDS 45.0%
ATGGAAACGAGATAGGGAAC+TGG - chr3_2:79392299-79392318 Msa0428480:CDS 45.0%
TGGAAACGAGATAGGGAACT+GGG - chr3_2:79392300-79392319 Msa0428480:CDS 45.0%
GAAAAATGAGCAGTAGGGTC+CGG + chr3_2:79392463-79392482 None:intergenic 45.0%
! GTCTTGTTCAAGTTCGAGTG+AGG - chr3_2:79392492-79392511 Msa0428480:five_prime_UTR 45.0%
!! CCTTTGTGACTTGGTGGATT+TGG + chr3_2:79391315-79391334 None:intergenic 45.0%
CCAAATCCACCAAGTCACAA+AGG - chr3_2:79391312-79391331 Msa0428480:three_prime_UTR 45.0%
TGAGGTATGAGGCTGAAGAT+AGG + chr3_2:79391495-79391514 None:intergenic 45.0%
TTCAGCCTCATACCTCAAAC+TGG - chr3_2:79391498-79391517 Msa0428480:CDS 45.0%
GGCTGAAAACAAAAACCAGG+AGG + chr3_2:79391602-79391621 None:intergenic 45.0%
ATGTCTGCAAGTATGATCCC+TGG - chr3_2:79391702-79391721 Msa0428480:intron 45.0%
TGTCTGCAAGTATGATCCCT+GGG - chr3_2:79391703-79391722 Msa0428480:intron 45.0%
TAAGTACCTGGCAAATCCCA+GGG + chr3_2:79391722-79391741 None:intergenic 45.0%
TGCCAGGTACTTAGCAAACT+AGG - chr3_2:79391729-79391748 Msa0428480:intron 45.0%
!! AGCCTAGTTTGCTAAGTACC+TGG + chr3_2:79391734-79391753 None:intergenic 45.0%
!!! GCGAGTGCTGTTTTGATACT+TGG + chr3_2:79391932-79391951 None:intergenic 45.0%
TGCCTTCCAATAACCAGAGT+TGG + chr3_2:79391968-79391987 None:intergenic 45.0%
TCTGGTTATTGGAAGGCAAC+AGG - chr3_2:79391970-79391989 Msa0428480:CDS 45.0%
TGCCACGATCTACTCCAATT+CGG + chr3_2:79392217-79392236 None:intergenic 45.0%
TGGGTGCAGATGCAAAACTA+TGG - chr3_2:79392280-79392299 Msa0428480:CDS 45.0%
ATGGAAACGAGATAGGGAAC+TGG - chr3_2:79392299-79392318 Msa0428480:CDS 45.0%
TGGAAACGAGATAGGGAACT+GGG - chr3_2:79392300-79392319 Msa0428480:CDS 45.0%
GAAAAATGAGCAGTAGGGTC+CGG + chr3_2:79392463-79392482 None:intergenic 45.0%
! GTCTTGTTCAAGTTCGAGTG+AGG - chr3_2:79392492-79392511 Msa0428480:five_prime_UTR 45.0%
TATGATCCCTGGGATTTGCC+AGG - chr3_2:79391713-79391732 Msa0428480:intron 50.0%
CTAAGTACCTGGCAAATCCC+AGG + chr3_2:79391723-79391742 None:intergenic 50.0%
GACCGAATTGGAGTAGATCG+TGG - chr3_2:79392212-79392231 Msa0428480:CDS 50.0%
TATGATCCCTGGGATTTGCC+AGG - chr3_2:79391713-79391732 Msa0428480:intron 50.0%
CTAAGTACCTGGCAAATCCC+AGG + chr3_2:79391723-79391742 None:intergenic 50.0%
GACCGAATTGGAGTAGATCG+TGG - chr3_2:79392212-79392231 Msa0428480:CDS 50.0%
AAGACGAGCTCTTCGTCCGT+TGG + chr3_2:79391623-79391642 None:intergenic 55.0%
! GAGGGTACACAACTCAGCTC+CGG - chr3_2:79392441-79392460 Msa0428480:five_prime_UTR 55.0%
AAGACGAGCTCTTCGTCCGT+TGG + chr3_2:79391623-79391642 None:intergenic 55.0%
! GAGGGTACACAACTCAGCTC+CGG - chr3_2:79392441-79392460 Msa0428480:five_prime_UTR 55.0%
GGTGCAAGCAGATTGCCTCC+TGG - chr3_2:79391584-79391603 Msa0428480:CDS 60.0%
GGTGCAAGCAGATTGCCTCC+TGG - chr3_2:79391584-79391603 Msa0428480:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 79391290 79392641 79391290 ID=Msa0428480;Name=Msa0428480
chr3_2 mRNA 79391290 79392641 79391290 ID=Msa0428480-mRNA-1;Parent=Msa0428480;Name=Msa0428480-mRNA-1;_AED=0.04;_eAED=0.04;_QI=267|1|1|1|1|1|3|80|240
chr3_2 exon 79391290 79391642 79391290 ID=Msa0428480-mRNA-1:exon:21432;Parent=Msa0428480-mRNA-1
chr3_2 exon 79391776 79392047 79391776 ID=Msa0428480-mRNA-1:exon:21431;Parent=Msa0428480-mRNA-1
chr3_2 exon 79392197 79392641 79392197 ID=Msa0428480-mRNA-1:exon:21430;Parent=Msa0428480-mRNA-1
chr3_2 five_prime_UTR 79392375 79392641 79392375 ID=Msa0428480-mRNA-1:five_prime_utr;Parent=Msa0428480-mRNA-1
chr3_2 CDS 79392197 79392374 79392197 ID=Msa0428480-mRNA-1:cds;Parent=Msa0428480-mRNA-1
chr3_2 CDS 79391776 79392047 79391776 ID=Msa0428480-mRNA-1:cds;Parent=Msa0428480-mRNA-1
chr3_2 CDS 79391370 79391642 79391370 ID=Msa0428480-mRNA-1:cds;Parent=Msa0428480-mRNA-1
chr3_2 three_prime_UTR 79391290 79391369 79391290 ID=Msa0428480-mRNA-1:three_prime_utr;Parent=Msa0428480-mRNA-1
Gene Sequence

>Msa0428480

ATGGAAAAGCTGAATTTTGTGAAAAATGGTGCAAGCAGATTGCCTCCTGGTTTTTGTTTTCAGCCAACGGACGAAGAGCTCGTCTTTTACTTGAAATGCAAGATCTTCTCCTATCAATTGCCTGCTTCAATTATTCCTGAGATCAATGTCTGCAAGTATGATCCCTGGGATTTGCCAGGAAATTGTGGTGAGCAAGATAAGTATTTCTTCAGCAGCAAGGAAGCCAAGTATCAAAACAGCACTCGCATGAACAGAACAACCAACTCTGGTTATTGGAAGGCAACAGGATCAGACAAGAAAGTTAGTGTTTCTTCATCACTAAGTAATGGAATCGCGGGAATAAGAAAAAGTCTTGTATTTTATCAAGGAAAATCTCCAAATGGATCTCGAACTAATTGGATCATGCATGAATATCGCCTAGTTAGCTTAGAAACTACTGCTTGCAATCAGATGCAAAACTATGGAAACGAGATAGGGAACTGGGTTTTGTGTCGTATATTCACGAAGAAAAGAAGTAATATAGAAAACGGTTACATGATGAAGACCAATACGGTGATGAATACTAATGTTGAGGTAGCTCAGCCAAGATTCTTTGATTTTATGAGGGTACACAACTCAGCTCCGGACCCTACTGCTCATTTTTCTATATCATCGTCTTGTTCAAGTTCGAGTGAGGTCTCTTCATCAGAAGAAAGATGCGGCGATATATATACTGATTTTTAA
Protein sequence

>Msa0428480

MEKLNFVKNGASRLPPGFCFQPTDEELVFYLKCKIFSYQLPASIIPEINVCKYDPWDLPGNCGEQDKYFFSSKEAKYQNSTRMNRTTNSGYWKATGSDKKVSVSSSLSNGIAGIRKSLVFYQGKSPNGSRTNWIMHEYRLVSLETTACNQMQNYGNEIGNWVLCRIFTKKRSNIENGYMMKTNTVMNTNVEVAQPRFFDFMRVHNSAPDPTAHFSISSSCSSSSEVSSSEERCGDIYTDF*