AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0430940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0430940 MtrunA17_Chr3g0134741 89.720 321 27 1 1 315 1 321 0.0 600
Msa0430940 MtrunA17_Chr1g0152651 49.176 364 104 12 1 298 1 349 6.96e-86 262
Msa0430940 MtrunA17_Chr5g0393721 40.237 338 151 15 1 313 1 312 1.41e-54 181
Msa0430940 MtrunA17_Chr1g0207301 51.445 173 63 4 147 308 211 373 3.89e-46 160
Msa0430940 MtrunA17_Chr1g0207311 78.161 87 19 0 222 308 195 281 2.18e-43 150
Msa0430940 MtrunA17_Chr5g0435021 58.571 70 29 0 222 291 217 286 1.59e-22 95.5
Msa0430940 MtrunA17_Chr4g0074161 52.632 76 36 0 222 297 205 280 2.44e-18 84.7
Msa0430940 MtrunA17_Chr8g0384141 60.606 66 25 1 222 287 114 178 1.11e-17 81.3
Msa0430940 MtrunA17_Chr1g0190731 46.341 82 44 0 222 303 192 273 3.58e-16 78.2
Msa0430940 MtrunA17_Chr3g0134001 53.968 63 29 0 223 285 171 233 6.97e-16 76.3
Msa0430940 MtrunA17_Chr7g0243041 54.545 55 25 0 230 284 33 87 8.05e-15 70.9
Msa0430940 MtrunA17_Chr1g0153241 39.241 79 48 0 222 300 84 162 8.54e-14 70.1
Msa0430940 MtrunA17_Chr1g0193321 45.455 66 36 0 221 286 460 525 3.15e-13 70.5
Msa0430940 MtrunA17_Chr4g0014771 53.030 66 30 1 222 286 117 182 9.32e-13 65.9
Msa0430940 MtrunA17_Chr8g0363921 31.847 157 88 5 139 286 69 215 2.54e-12 66.2
Msa0430940 MtrunA17_Chr1g0182791 43.939 66 37 0 221 286 315 380 4.24e-12 66.6
Msa0430940 MtrunA17_Chr4g0032951 39.823 113 66 2 175 286 308 419 4.56e-12 66.2
Msa0430940 MtrunA17_Chr3g0095391 30.822 146 89 2 154 292 233 373 4.61e-12 66.6
Msa0430940 MtrunA17_Chr6g0484271 44.318 88 44 2 204 286 132 219 6.13e-12 65.1
Msa0430940 MtrunA17_Chr1g0174271 54.545 66 29 1 222 286 297 362 1.04e-11 65.1
Msa0430940 MtrunA17_Chr7g0234761 30.526 190 116 5 98 286 207 381 1.05e-11 65.5
Msa0430940 MtrunA17_Chr8g0339091 53.125 64 29 1 224 286 292 355 1.34e-11 65.1
Msa0430940 MtrunA17_Chr5g0402031 42.188 64 37 0 236 299 118 181 1.39e-11 64.7
Msa0430940 MtrunA17_Chr1g0152131 51.562 64 30 1 224 286 261 324 1.98e-11 64.3
Msa0430940 MtrunA17_Chr7g0270871 46.269 67 34 1 220 286 201 265 2.15e-11 63.9
Msa0430940 MtrunA17_Chr5g0415291 50.000 64 31 1 224 286 113 176 2.59e-11 62.8
Msa0430940 MtrunA17_Chr4g0035101 51.562 64 30 1 224 286 144 207 3.91e-11 63.2
Msa0430940 MtrunA17_Chr7g0231461 50.000 60 28 1 226 285 302 359 5.39e-11 63.2
Msa0430940 MtrunA17_Chr3g0131771 53.125 64 29 1 224 286 148 211 5.92e-11 62.4
Msa0430940 MtrunA17_Chr3g0144641 51.562 64 30 1 224 286 192 255 6.52e-11 62.8
Msa0430940 MtrunA17_Chr5g0421111 51.562 64 30 1 224 286 366 429 6.65e-11 63.2
Msa0430940 MtrunA17_Chr2g0329041 51.562 64 30 1 222 284 331 394 7.18e-11 62.8
Msa0430940 MtrunA17_Chr8g0365941 51.562 64 30 1 224 286 306 369 8.34e-11 62.8
Msa0430940 MtrunA17_Chr7g0262691 36.559 93 54 1 191 283 225 312 8.72e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0430940 AT2G14760.1 50.230 217 74 6 109 307 121 321 2.70e-56 185
Msa0430940 AT4G33880.1 59.119 159 62 1 150 305 190 348 9.92e-55 182
Msa0430940 AT1G27740.1 61.486 148 40 3 162 308 121 252 4.09e-53 175
Msa0430940 AT2G14760.3 47.391 230 74 7 109 307 121 334 1.18e-52 176
Msa0430940 AT5G43175.1 57.931 145 52 3 165 308 81 217 7.91e-46 155
Msa0430940 AT5G37800.1 61.039 77 29 1 216 291 193 269 1.45e-23 98.6
Msa0430940 AT1G66470.1 52.809 89 42 0 203 291 175 263 2.81e-23 97.8
Msa0430940 AT2G24260.2 51.613 93 43 1 207 297 17 109 1.07e-21 92.4
Msa0430940 AT4G30980.1 47.573 103 47 2 189 290 101 197 3.46e-21 92.0
Msa0430940 AT4G30980.2 47.573 103 47 2 189 290 149 245 4.60e-21 92.4
Msa0430940 AT2G24260.1 51.613 93 43 1 207 297 120 212 7.04e-21 92.0
Msa0430940 AT5G58010.1 46.875 96 47 2 222 313 98 193 2.21e-19 87.0
Msa0430940 AT3G21330.1 52.381 63 30 0 223 285 269 331 2.69e-15 76.3
Msa0430940 AT5G50915.1 34.637 179 77 7 170 314 57 229 7.86e-15 73.9
Msa0430940 AT5G50915.2 34.637 179 77 7 170 314 57 229 7.86e-15 73.9
Msa0430940 AT5G50915.3 34.637 179 77 7 170 314 57 229 9.03e-15 73.6
Msa0430940 AT5G50915.4 34.637 179 77 7 170 314 57 229 9.03e-15 73.6
Msa0430940 AT5G01305.1 49.180 61 31 0 222 282 36 96 1.31e-14 71.2
Msa0430940 AT4G00120.1 50.000 54 27 0 232 285 121 174 3.49e-14 70.5
Msa0430940 AT1G25330.1 50.617 81 39 1 224 303 105 185 4.29e-13 67.8
Msa0430940 AT1G09530.3 37.895 95 53 1 201 295 321 409 6.12e-13 69.7
Msa0430940 AT1G09530.2 37.895 95 53 1 201 295 321 409 6.12e-13 69.7
Msa0430940 AT1G09530.5 37.895 95 53 1 201 295 321 409 6.12e-13 69.7
Msa0430940 AT1G09530.1 37.895 95 53 1 201 295 321 409 6.12e-13 69.7
Msa0430940 AT1G09530.4 37.895 95 53 1 201 295 321 409 6.12e-13 69.7
Msa0430940 AT1G09530.6 37.895 95 53 1 201 295 321 409 6.12e-13 69.7
Msa0430940 AT4G00050.2 39.423 104 51 3 183 286 77 168 9.90e-13 67.8
Msa0430940 AT1G51140.1 53.846 65 29 1 222 285 303 367 1.15e-12 68.6
Msa0430940 AT2G20180.7 32.031 128 69 3 196 314 185 303 1.39e-12 68.2
Msa0430940 AT2G20180.1 32.031 128 69 3 196 314 185 303 1.39e-12 68.2
Msa0430940 AT2G20180.5 32.031 128 69 3 196 314 185 303 1.39e-12 68.2
Msa0430940 AT2G20180.4 32.031 128 69 3 196 314 256 374 1.54e-12 68.2
Msa0430940 AT2G20180.6 32.031 128 69 3 196 314 256 374 1.54e-12 68.2
Msa0430940 AT2G20180.2 32.031 128 69 3 196 314 256 374 1.54e-12 68.2
Msa0430940 AT2G20180.3 32.031 128 69 3 196 314 256 374 1.54e-12 68.2
Msa0430940 AT1G18400.2 54.688 64 28 1 224 286 146 209 1.69e-12 66.6
Msa0430940 AT1G18400.1 54.688 64 28 1 224 286 146 209 2.17e-12 66.6
Msa0430940 AT4G00050.1 39.423 104 51 3 183 286 179 270 2.22e-12 67.8
Msa0430940 AT4G00050.3 39.423 104 51 3 183 286 179 270 2.46e-12 67.4
Msa0430940 AT2G46970.2 30.645 124 80 2 195 313 165 287 4.21e-12 66.6
Msa0430940 AT4G09180.1 48.529 68 34 1 222 288 183 250 4.63e-12 65.5
Msa0430940 AT2G46970.1 30.645 124 80 2 195 313 196 318 4.69e-12 66.6
Msa0430940 AT2G46970.3 30.645 124 80 2 195 313 174 296 4.79e-12 66.6
Msa0430940 AT1G35460.1 50.000 66 32 1 222 286 180 245 8.82e-12 64.7
Msa0430940 AT4G28790.1 45.946 74 39 1 227 300 275 347 1.17e-11 65.5
Msa0430940 AT1G73830.1 51.562 64 30 1 224 286 148 211 1.24e-11 64.3
Msa0430940 AT1G73830.2 51.562 64 30 1 224 286 148 211 1.25e-11 64.3
Msa0430940 AT4G28815.2 38.776 98 55 2 206 298 47 144 1.29e-11 63.9
Msa0430940 AT4G28815.1 38.776 98 55 2 206 298 123 220 2.00e-11 64.3
Msa0430940 AT2G18300.2 36.434 129 73 3 159 286 129 249 2.19e-11 64.3
Msa0430940 AT2G18300.1 36.434 129 73 3 159 286 129 249 2.31e-11 64.3
Msa0430940 AT1G68920.3 32.237 152 101 2 136 286 216 366 2.36e-11 64.7
Msa0430940 AT2G18300.3 36.434 129 73 3 159 286 129 249 2.44e-11 64.3
Msa0430940 AT5G67110.1 40.404 99 45 3 219 315 81 167 2.44e-11 62.8
Msa0430940 AT3G07340.1 53.125 64 29 1 224 286 259 322 2.91e-11 64.3
Msa0430940 AT3G07340.2 53.125 64 29 1 224 286 259 322 3.11e-11 64.3
Msa0430940 AT4G36930.1 31.034 116 79 1 200 314 167 282 3.32e-11 63.9
Msa0430940 AT1G26260.3 53.125 64 29 1 224 286 173 236 3.85e-11 63.5
Msa0430940 AT2G42280.1 52.308 65 30 1 222 285 278 342 4.08e-11 63.5
Msa0430940 AT5G48560.1 53.125 64 29 1 224 286 302 365 4.11e-11 63.9
Msa0430940 AT1G26260.4 53.125 64 29 1 224 286 224 287 4.28e-11 63.5
Msa0430940 AT1G26260.1 53.125 64 29 1 224 286 224 287 4.28e-11 63.5
Msa0430940 AT1G26260.6 53.125 64 29 1 224 286 224 287 4.28e-11 63.5
Msa0430940 AT1G26260.2 53.125 64 29 1 224 286 224 287 4.28e-11 63.5
Msa0430940 AT5G48560.2 53.125 64 29 1 224 286 302 365 4.51e-11 63.9
Msa0430940 AT1G26260.5 53.125 64 29 1 224 286 202 265 4.70e-11 63.5
Msa0430940 AT1G59640.1 50.000 64 31 1 224 286 137 200 4.96e-11 62.8
Msa0430940 AT1G10120.2 51.562 64 30 1 224 286 207 270 5.03e-11 63.5
Msa0430940 AT1G10120.1 51.562 64 30 1 224 286 207 270 5.03e-11 63.5
Msa0430940 AT2G20180.8 37.079 89 51 1 196 284 256 339 5.81e-11 63.2
Msa0430940 AT4G34530.1 51.562 64 30 1 224 286 173 236 7.56e-11 62.8
Msa0430940 AT3G23690.1 50.000 64 31 1 224 286 192 255 9.04e-11 62.8

Find 58 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAACCTTCTTGCTCTTCT+TGG 0.125181 3_2:-82773833 None:intergenic
TGAGTATTATGATTACTTTC+TGG 0.228641 3_2:-82773379 None:intergenic
GCTTGATGTGCCAGAATTTC+AGG 0.228928 3_2:+82773516 Msa0430940:CDS
GCTGCAGAAATTTCACATAT+TGG 0.264015 3_2:-82774481 None:intergenic
ACTCATATATTACCTTGATT+TGG 0.291701 3_2:-82774505 None:intergenic
TCTACATGCACCTGAAATTC+TGG 0.295024 3_2:-82773526 None:intergenic
TAAATTACCTTTGTCCCATT+TGG 0.321779 3_2:-82774335 None:intergenic
TCAAGTCCATTATAAGCAAT+TGG 0.332783 3_2:-82774671 None:intergenic
TATGCCCCAATTGCTTATAA+TGG 0.346115 3_2:+82774665 Msa0430940:CDS
CTTCTGCTTGGAGAAAATAA+TGG 0.350452 3_2:+82773253 Msa0430940:CDS
CAAGTCCATTATAAGCAATT+GGG 0.382500 3_2:-82774670 None:intergenic
CTACAAAATCTTGTACCAAA+TGG 0.385534 3_2:+82774320 Msa0430940:CDS
CATTCCCATTCGCCATCATC+AGG 0.393250 3_2:-82773163 None:intergenic
ACCCTTGCATAGAGGCTTTG+AGG 0.393741 3_2:-82774039 None:intergenic
TACAAAATCTTGTACCAAAT+GGG 0.416760 3_2:+82774321 Msa0430940:CDS
GGAGAAAATAATGGGAACTT+TGG 0.422902 3_2:+82773262 Msa0430940:CDS
GAAGCCAATGCAAGTGTAGA+TGG 0.429354 3_2:+82773877 Msa0430940:CDS
TTCTGCTTGGAGAAAATAAT+GGG 0.435352 3_2:+82773254 Msa0430940:CDS
AACCTAAGTTGAAGCTGAAA+AGG 0.448825 3_2:+82773491 Msa0430940:CDS
ACATTGGATTCAATCTCAAC+CGG 0.458816 3_2:+82774693 Msa0430940:CDS
TTGCTCCCCTTCTGAAGCTG+AGG 0.486357 3_2:+82773300 Msa0430940:CDS
GATCAAACCTCGCTTCTGCT+TGG 0.495958 3_2:+82773241 Msa0430940:CDS
GCTTATAATGGACTTGACAT+TGG 0.507048 3_2:+82774677 Msa0430940:CDS
ATTTCTGCAGCTCCAAATCA+AGG 0.513225 3_2:+82774493 Msa0430940:CDS
TATCCCTGATGATGGCGAAT+GGG 0.522217 3_2:+82773159 Msa0430940:CDS
ATGGTGGTGGAGAAATCTTC+CGG 0.539717 3_2:-82774712 None:intergenic
ATCCTCAAAGCCTCTATGCA+AGG 0.540493 3_2:+82774037 Msa0430940:CDS
ATGTTTCCCTCAGCTTCAGA+AGG 0.542520 3_2:-82773307 None:intergenic
CTTGGAGCTATCCCTGATGA+TGG 0.545545 3_2:+82773151 Msa0430940:CDS
TGCTCCCCTTCTGAAGCTGA+GGG 0.548801 3_2:+82773301 Msa0430940:CDS
AAGATAAGATAAACTCATGT+GGG 0.556515 3_2:+82773548 Msa0430940:CDS
ACTGTGTCTCTCAACTCCAA+TGG 0.558276 3_2:+82773982 Msa0430940:CDS
ATGTCCATCTACACTTGCAT+TGG 0.565311 3_2:-82773881 None:intergenic
TGATAATTACCCTTGCATAG+AGG 0.574539 3_2:-82774047 None:intergenic
TGTTTCCCTCAGCTTCAGAA+GGG 0.575825 3_2:-82773306 None:intergenic
CTATCCCTGATGATGGCGAA+TGG 0.588808 3_2:+82773158 Msa0430940:CDS
GAAGATAAGATAAACTCATG+TGG 0.590178 3_2:+82773547 Msa0430940:CDS
ATTGTGGTGGAGAGTCATCA+TGG 0.590276 3_2:-82773213 None:intergenic
TCCTCAAAGCCTCTATGCAA+GGG 0.593714 3_2:+82774038 Msa0430940:CDS
TTCAGAAGGGGAGCAAAACA+TGG 0.599755 3_2:-82773293 None:intergenic
TCTTGTACCAAATGGGACAA+AGG 0.600952 3_2:+82774328 Msa0430940:CDS
CTCTGAGGTATAACCACTAG+AGG 0.615332 3_2:-82773905 None:intergenic
GAAAGTAATCATAATACTCA+AGG 0.616654 3_2:+82773382 Msa0430940:CDS
AAGTCCATTATAAGCAATTG+GGG 0.617408 3_2:-82774669 None:intergenic
GTTTCCCTCAGCTTCAGAAG+GGG 0.626059 3_2:-82773305 None:intergenic
GGAAAGAAAAGAGCTAGTAG+AGG 0.626774 3_2:+82774003 Msa0430940:CDS
CTCTAGTGGTTATACCTCAG+AGG 0.631424 3_2:+82773906 Msa0430940:CDS
TTCTAAGCTCTGATGATCTG+TGG 0.632585 3_2:+82774639 Msa0430940:CDS
GAGGTTTGATCAAGTAATTG+TGG 0.634212 3_2:-82773229 None:intergenic
AGAGTCCAAGAAGAGCAAGA+AGG 0.635660 3_2:+82773828 Msa0430940:CDS
GTTTGATCAAGTAATTGTGG+TGG 0.639569 3_2:-82773226 None:intergenic
ATTCCCATTCGCCATCATCA+GGG 0.639610 3_2:-82773162 None:intergenic
GTAGATGGACATACCTCTAG+TGG 0.644629 3_2:+82773892 Msa0430940:CDS
CTTCAGTTGCAAATATTCTG+CGG 0.648235 3_2:-82773189 None:intergenic
GGTTGATAGAAATGAAAACA+AGG 0.650583 3_2:+82773849 Msa0430940:CDS
AGAGGAGCAAAACATGTGTG+AGG 0.671006 3_2:+82773924 Msa0430940:CDS
ATGTGTGAGGAAAACAGTGG+AGG 0.712518 3_2:+82773937 Msa0430940:CDS
AACATGTGTGAGGAAAACAG+TGG 0.786485 3_2:+82773934 Msa0430940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCATTATTACTAATTAAAG+TGG - chr3_2:82773758-82773777 None:intergenic 15.0%
!!! AATAATGATTTGAAATTTTG+TGG + chr3_2:82773769-82773788 Msa0430940:intron 15.0%
!! ATCATTATTACTAATTAAAG+TGG - chr3_2:82773758-82773777 None:intergenic 15.0%
!!! AATAATGATTTGAAATTTTG+TGG + chr3_2:82773769-82773788 Msa0430940:intron 15.0%
!!! TTTGAATTTTACAGAAAAGA+AGG + chr3_2:82774270-82774289 Msa0430940:intron 20.0%
!!! TTGAATTTTACAGAAAAGAA+GGG + chr3_2:82774271-82774290 Msa0430940:intron 20.0%
!!! AATGTTTTGCATTTTAAAGA+GGG + chr3_2:82774368-82774387 Msa0430940:intron 20.0%
!! GAGATGTATAATTTGATATA+TGG + chr3_2:82774412-82774431 Msa0430940:intron 20.0%
!! TGTATAATTTGATATATGGA+TGG + chr3_2:82774416-82774435 Msa0430940:intron 20.0%
!! ATTTCTGTTTAGAAATATCA+AGG + chr3_2:82774554-82774573 Msa0430940:intron 20.0%
!!! TTTGAATTTTACAGAAAAGA+AGG + chr3_2:82774270-82774289 Msa0430940:intron 20.0%
!!! TTGAATTTTACAGAAAAGAA+GGG + chr3_2:82774271-82774290 Msa0430940:intron 20.0%
!!! AATGTTTTGCATTTTAAAGA+GGG + chr3_2:82774368-82774387 Msa0430940:intron 20.0%
!! GAGATGTATAATTTGATATA+TGG + chr3_2:82774412-82774431 Msa0430940:intron 20.0%
!! TGTATAATTTGATATATGGA+TGG + chr3_2:82774416-82774435 Msa0430940:intron 20.0%
!! ATTTCTGTTTAGAAATATCA+AGG + chr3_2:82774554-82774573 Msa0430940:intron 20.0%
! TGAGTATTATGATTACTTTC+TGG - chr3_2:82773382-82773401 None:intergenic 25.0%
! GAAAGTAATCATAATACTCA+AGG + chr3_2:82773382-82773401 Msa0430940:CDS 25.0%
! AAGATAAGATAAACTCATGT+GGG + chr3_2:82773548-82773567 Msa0430940:CDS 25.0%
! TCATATGATATTTACTCCAT+CGG + chr3_2:82773630-82773649 Msa0430940:intron 25.0%
!!! TAATTAATTTGTCAGCTTAG+CGG + chr3_2:82773654-82773673 Msa0430940:intron 25.0%
!! TTGACATTTTGTAATCTCAA+AGG + chr3_2:82773685-82773704 Msa0430940:intron 25.0%
! AAGAGGAATAGTTAAACAAA+AGG - chr3_2:82774093-82774112 None:intergenic 25.0%
! TACAAAATCTTGTACCAAAT+GGG + chr3_2:82774321-82774340 Msa0430940:CDS 25.0%
!!! GAATGTTTTGCATTTTAAAG+AGG + chr3_2:82774367-82774386 Msa0430940:intron 25.0%
! ACTCATATATTACCTTGATT+TGG - chr3_2:82774508-82774527 None:intergenic 25.0%
! TGAGTATTATGATTACTTTC+TGG - chr3_2:82773382-82773401 None:intergenic 25.0%
! GAAAGTAATCATAATACTCA+AGG + chr3_2:82773382-82773401 Msa0430940:CDS 25.0%
! AAGATAAGATAAACTCATGT+GGG + chr3_2:82773548-82773567 Msa0430940:CDS 25.0%
! TCATATGATATTTACTCCAT+CGG + chr3_2:82773630-82773649 Msa0430940:intron 25.0%
!!! TAATTAATTTGTCAGCTTAG+CGG + chr3_2:82773654-82773673 Msa0430940:intron 25.0%
!! TTGACATTTTGTAATCTCAA+AGG + chr3_2:82773685-82773704 Msa0430940:intron 25.0%
! AAGAGGAATAGTTAAACAAA+AGG - chr3_2:82774093-82774112 None:intergenic 25.0%
! TACAAAATCTTGTACCAAAT+GGG + chr3_2:82774321-82774340 Msa0430940:CDS 25.0%
!!! GAATGTTTTGCATTTTAAAG+AGG + chr3_2:82774367-82774386 Msa0430940:intron 25.0%
! ACTCATATATTACCTTGATT+TGG - chr3_2:82774508-82774527 None:intergenic 25.0%
TTCTGCTTGGAGAAAATAAT+GGG + chr3_2:82773254-82773273 Msa0430940:CDS 30.0%
!! TTTTGATTGTTCTGATCATG+TGG + chr3_2:82773420-82773439 Msa0430940:CDS 30.0%
GAAGATAAGATAAACTCATG+TGG + chr3_2:82773547-82773566 Msa0430940:CDS 30.0%
CTGACAAATTAATTAACCGA+TGG - chr3_2:82773649-82773668 None:intergenic 30.0%
ACTAATTAAAGTGGTACTAG+TGG - chr3_2:82773749-82773768 None:intergenic 30.0%
! ATTTTGTGGTTTCCAAATTC+AGG + chr3_2:82773783-82773802 Msa0430940:intron 30.0%
!! GGTTGATAGAAATGAAAACA+AGG + chr3_2:82773849-82773868 Msa0430940:CDS 30.0%
ACAGAATGGAGATTAAAAAG+AGG - chr3_2:82774110-82774129 None:intergenic 30.0%
TGCTATATACTTCATTCACT+TGG - chr3_2:82774227-82774246 None:intergenic 30.0%
CTACAAAATCTTGTACCAAA+TGG + chr3_2:82774320-82774339 Msa0430940:CDS 30.0%
TAAATTACCTTTGTCCCATT+TGG - chr3_2:82774338-82774357 None:intergenic 30.0%
! GGGACAAAGGTAATTTATTT+TGG + chr3_2:82774341-82774360 Msa0430940:intron 30.0%
AAGTCCATTATAAGCAATTG+GGG - chr3_2:82774672-82774691 None:intergenic 30.0%
CAAGTCCATTATAAGCAATT+GGG - chr3_2:82774673-82774692 None:intergenic 30.0%
TCAAGTCCATTATAAGCAAT+TGG - chr3_2:82774674-82774693 None:intergenic 30.0%
TTCTGCTTGGAGAAAATAAT+GGG + chr3_2:82773254-82773273 Msa0430940:CDS 30.0%
!! TTTTGATTGTTCTGATCATG+TGG + chr3_2:82773420-82773439 Msa0430940:CDS 30.0%
GAAGATAAGATAAACTCATG+TGG + chr3_2:82773547-82773566 Msa0430940:CDS 30.0%
CTGACAAATTAATTAACCGA+TGG - chr3_2:82773649-82773668 None:intergenic 30.0%
ACTAATTAAAGTGGTACTAG+TGG - chr3_2:82773749-82773768 None:intergenic 30.0%
! ATTTTGTGGTTTCCAAATTC+AGG + chr3_2:82773783-82773802 Msa0430940:intron 30.0%
!! GGTTGATAGAAATGAAAACA+AGG + chr3_2:82773849-82773868 Msa0430940:CDS 30.0%
ACAGAATGGAGATTAAAAAG+AGG - chr3_2:82774110-82774129 None:intergenic 30.0%
TGCTATATACTTCATTCACT+TGG - chr3_2:82774227-82774246 None:intergenic 30.0%
CTACAAAATCTTGTACCAAA+TGG + chr3_2:82774320-82774339 Msa0430940:CDS 30.0%
TAAATTACCTTTGTCCCATT+TGG - chr3_2:82774338-82774357 None:intergenic 30.0%
! GGGACAAAGGTAATTTATTT+TGG + chr3_2:82774341-82774360 Msa0430940:intron 30.0%
AAGTCCATTATAAGCAATTG+GGG - chr3_2:82774672-82774691 None:intergenic 30.0%
CAAGTCCATTATAAGCAATT+GGG - chr3_2:82774673-82774692 None:intergenic 30.0%
TCAAGTCCATTATAAGCAAT+TGG - chr3_2:82774674-82774693 None:intergenic 30.0%
CTTCAGTTGCAAATATTCTG+CGG - chr3_2:82773192-82773211 None:intergenic 35.0%
GTTTGATCAAGTAATTGTGG+TGG - chr3_2:82773229-82773248 None:intergenic 35.0%
GAGGTTTGATCAAGTAATTG+TGG - chr3_2:82773232-82773251 None:intergenic 35.0%
CTTCTGCTTGGAGAAAATAA+TGG + chr3_2:82773253-82773272 Msa0430940:CDS 35.0%
! GGAGAAAATAATGGGAACTT+TGG + chr3_2:82773262-82773281 Msa0430940:CDS 35.0%
! TTTTCAGCTTCAACTTAGGT+TGG - chr3_2:82773492-82773511 None:intergenic 35.0%
! AACCTAAGTTGAAGCTGAAA+AGG + chr3_2:82773491-82773510 Msa0430940:CDS 35.0%
! ATCCTTTTCAGCTTCAACTT+AGG - chr3_2:82773496-82773515 None:intergenic 35.0%
CATATTACAATCGTCTCTCA+TGG - chr3_2:82773725-82773744 None:intergenic 35.0%
!! ACTAGCTCTTTTCTTTCCAT+TGG - chr3_2:82774001-82774020 None:intergenic 35.0%
TGATAATTACCCTTGCATAG+AGG - chr3_2:82774050-82774069 None:intergenic 35.0%
TCCTTCCAAAGAAGAAAAGA+AGG - chr3_2:82774149-82774168 None:intergenic 35.0%
!! TCTTTTCTTCTTTGGAAGGA+TGG + chr3_2:82774149-82774168 Msa0430940:intron 35.0%
ATATATGGATGGTCATACAC+AGG + chr3_2:82774427-82774446 Msa0430940:intron 35.0%
GCTGCAGAAATTTCACATAT+TGG - chr3_2:82774484-82774503 None:intergenic 35.0%
TATGCCCCAATTGCTTATAA+TGG + chr3_2:82774665-82774684 Msa0430940:CDS 35.0%
!! GCTTATAATGGACTTGACAT+TGG + chr3_2:82774677-82774696 Msa0430940:CDS 35.0%
ACATTGGATTCAATCTCAAC+CGG + chr3_2:82774693-82774712 Msa0430940:CDS 35.0%
CTTCAGTTGCAAATATTCTG+CGG - chr3_2:82773192-82773211 None:intergenic 35.0%
GTTTGATCAAGTAATTGTGG+TGG - chr3_2:82773229-82773248 None:intergenic 35.0%
GAGGTTTGATCAAGTAATTG+TGG - chr3_2:82773232-82773251 None:intergenic 35.0%
CTTCTGCTTGGAGAAAATAA+TGG + chr3_2:82773253-82773272 Msa0430940:CDS 35.0%
! GGAGAAAATAATGGGAACTT+TGG + chr3_2:82773262-82773281 Msa0430940:CDS 35.0%
! TTTTCAGCTTCAACTTAGGT+TGG - chr3_2:82773492-82773511 None:intergenic 35.0%
! AACCTAAGTTGAAGCTGAAA+AGG + chr3_2:82773491-82773510 Msa0430940:CDS 35.0%
! ATCCTTTTCAGCTTCAACTT+AGG - chr3_2:82773496-82773515 None:intergenic 35.0%
CATATTACAATCGTCTCTCA+TGG - chr3_2:82773725-82773744 None:intergenic 35.0%
!! ACTAGCTCTTTTCTTTCCAT+TGG - chr3_2:82774001-82774020 None:intergenic 35.0%
TGATAATTACCCTTGCATAG+AGG - chr3_2:82774050-82774069 None:intergenic 35.0%
TCCTTCCAAAGAAGAAAAGA+AGG - chr3_2:82774149-82774168 None:intergenic 35.0%
!! TCTTTTCTTCTTTGGAAGGA+TGG + chr3_2:82774149-82774168 Msa0430940:intron 35.0%
ATATATGGATGGTCATACAC+AGG + chr3_2:82774427-82774446 Msa0430940:intron 35.0%
GCTGCAGAAATTTCACATAT+TGG - chr3_2:82774484-82774503 None:intergenic 35.0%
TATGCCCCAATTGCTTATAA+TGG + chr3_2:82774665-82774684 Msa0430940:CDS 35.0%
!! GCTTATAATGGACTTGACAT+TGG + chr3_2:82774677-82774696 Msa0430940:CDS 35.0%
ACATTGGATTCAATCTCAAC+CGG + chr3_2:82774693-82774712 Msa0430940:CDS 35.0%
TCTACATGCACCTGAAATTC+TGG - chr3_2:82773529-82773548 None:intergenic 40.0%
!!! CAGCACGAGGTTTTTTCTTA+GGG - chr3_2:82773576-82773595 None:intergenic 40.0%
TGCATCTTTGCACCTGAATT+TGG - chr3_2:82773798-82773817 None:intergenic 40.0%
ATCAACCTTCTTGCTCTTCT+TGG - chr3_2:82773836-82773855 None:intergenic 40.0%
ATGTCCATCTACACTTGCAT+TGG - chr3_2:82773884-82773903 None:intergenic 40.0%
AACATGTGTGAGGAAAACAG+TGG + chr3_2:82773934-82773953 Msa0430940:CDS 40.0%
GGAAAGAAAAGAGCTAGTAG+AGG + chr3_2:82774003-82774022 Msa0430940:CDS 40.0%
ACATGCTATGGTTCACAGAA+TGG - chr3_2:82774124-82774143 None:intergenic 40.0%
ATTCTGTGAACCATAGCATG+TGG + chr3_2:82774123-82774142 Msa0430940:intron 40.0%
! TGTGGCCTTCTTTTCTTCTT+TGG + chr3_2:82774141-82774160 Msa0430940:intron 40.0%
! GCCTTCTTTTCTTCTTTGGA+AGG + chr3_2:82774145-82774164 Msa0430940:intron 40.0%
TCTTGTACCAAATGGGACAA+AGG + chr3_2:82774328-82774347 Msa0430940:CDS 40.0%
ATTTCTGCAGCTCCAAATCA+AGG + chr3_2:82774493-82774512 Msa0430940:CDS 40.0%
! TTCTAAGCTCTGATGATCTG+TGG + chr3_2:82774639-82774658 Msa0430940:CDS 40.0%
TCTACATGCACCTGAAATTC+TGG - chr3_2:82773529-82773548 None:intergenic 40.0%
!!! CAGCACGAGGTTTTTTCTTA+GGG - chr3_2:82773576-82773595 None:intergenic 40.0%
TGCATCTTTGCACCTGAATT+TGG - chr3_2:82773798-82773817 None:intergenic 40.0%
ATCAACCTTCTTGCTCTTCT+TGG - chr3_2:82773836-82773855 None:intergenic 40.0%
ATGTCCATCTACACTTGCAT+TGG - chr3_2:82773884-82773903 None:intergenic 40.0%
AACATGTGTGAGGAAAACAG+TGG + chr3_2:82773934-82773953 Msa0430940:CDS 40.0%
GGAAAGAAAAGAGCTAGTAG+AGG + chr3_2:82774003-82774022 Msa0430940:CDS 40.0%
ACATGCTATGGTTCACAGAA+TGG - chr3_2:82774124-82774143 None:intergenic 40.0%
ATTCTGTGAACCATAGCATG+TGG + chr3_2:82774123-82774142 Msa0430940:intron 40.0%
! TGTGGCCTTCTTTTCTTCTT+TGG + chr3_2:82774141-82774160 Msa0430940:intron 40.0%
! GCCTTCTTTTCTTCTTTGGA+AGG + chr3_2:82774145-82774164 Msa0430940:intron 40.0%
TCTTGTACCAAATGGGACAA+AGG + chr3_2:82774328-82774347 Msa0430940:CDS 40.0%
ATTTCTGCAGCTCCAAATCA+AGG + chr3_2:82774493-82774512 Msa0430940:CDS 40.0%
! TTCTAAGCTCTGATGATCTG+TGG + chr3_2:82774639-82774658 Msa0430940:CDS 40.0%
!! TATCCCTGATGATGGCGAAT+GGG + chr3_2:82773159-82773178 Msa0430940:CDS 45.0%
ATTCCCATTCGCCATCATCA+GGG - chr3_2:82773165-82773184 None:intergenic 45.0%
! ATTGTGGTGGAGAGTCATCA+TGG - chr3_2:82773216-82773235 None:intergenic 45.0%
! ATTTTCTCCAAGCAGAAGCG+AGG - chr3_2:82773251-82773270 None:intergenic 45.0%
TTCAGAAGGGGAGCAAAACA+TGG - chr3_2:82773296-82773315 None:intergenic 45.0%
TGTTTCCCTCAGCTTCAGAA+GGG - chr3_2:82773309-82773328 None:intergenic 45.0%
ATGTTTCCCTCAGCTTCAGA+AGG - chr3_2:82773310-82773329 None:intergenic 45.0%
GCTTGATGTGCCAGAATTTC+AGG + chr3_2:82773516-82773535 Msa0430940:CDS 45.0%
!!! GCAGCACGAGGTTTTTTCTT+AGG - chr3_2:82773577-82773596 None:intergenic 45.0%
! CTTACATCTTTTGCAGCACG+AGG - chr3_2:82773589-82773608 None:intergenic 45.0%
AGAGTCCAAGAAGAGCAAGA+AGG + chr3_2:82773828-82773847 Msa0430940:CDS 45.0%
GAAGCCAATGCAAGTGTAGA+TGG + chr3_2:82773877-82773896 Msa0430940:CDS 45.0%
GTAGATGGACATACCTCTAG+TGG + chr3_2:82773892-82773911 Msa0430940:CDS 45.0%
!! CTCTGAGGTATAACCACTAG+AGG - chr3_2:82773908-82773927 None:intergenic 45.0%
CTCTAGTGGTTATACCTCAG+AGG + chr3_2:82773906-82773925 Msa0430940:CDS 45.0%
! ACACATGTTTTGCTCCTCTG+AGG - chr3_2:82773923-82773942 None:intergenic 45.0%
AGAGGAGCAAAACATGTGTG+AGG + chr3_2:82773924-82773943 Msa0430940:CDS 45.0%
ATGTGTGAGGAAAACAGTGG+AGG + chr3_2:82773937-82773956 Msa0430940:CDS 45.0%
ACTGTGTCTCTCAACTCCAA+TGG + chr3_2:82773982-82774001 Msa0430940:CDS 45.0%
ATCCTCAAAGCCTCTATGCA+AGG + chr3_2:82774037-82774056 Msa0430940:CDS 45.0%
TCCTCAAAGCCTCTATGCAA+GGG + chr3_2:82774038-82774057 Msa0430940:CDS 45.0%
GAAAAGAAGGCCACATGCTA+TGG - chr3_2:82774136-82774155 None:intergenic 45.0%
!! ATGGTGGTGGAGAAATCTTC+CGG - chr3_2:82774715-82774734 None:intergenic 45.0%
!! TATCCCTGATGATGGCGAAT+GGG + chr3_2:82773159-82773178 Msa0430940:CDS 45.0%
ATTCCCATTCGCCATCATCA+GGG - chr3_2:82773165-82773184 None:intergenic 45.0%
! ATTGTGGTGGAGAGTCATCA+TGG - chr3_2:82773216-82773235 None:intergenic 45.0%
! ATTTTCTCCAAGCAGAAGCG+AGG - chr3_2:82773251-82773270 None:intergenic 45.0%
TTCAGAAGGGGAGCAAAACA+TGG - chr3_2:82773296-82773315 None:intergenic 45.0%
TGTTTCCCTCAGCTTCAGAA+GGG - chr3_2:82773309-82773328 None:intergenic 45.0%
ATGTTTCCCTCAGCTTCAGA+AGG - chr3_2:82773310-82773329 None:intergenic 45.0%
GCTTGATGTGCCAGAATTTC+AGG + chr3_2:82773516-82773535 Msa0430940:CDS 45.0%
!!! GCAGCACGAGGTTTTTTCTT+AGG - chr3_2:82773577-82773596 None:intergenic 45.0%
! CTTACATCTTTTGCAGCACG+AGG - chr3_2:82773589-82773608 None:intergenic 45.0%
AGAGTCCAAGAAGAGCAAGA+AGG + chr3_2:82773828-82773847 Msa0430940:CDS 45.0%
GAAGCCAATGCAAGTGTAGA+TGG + chr3_2:82773877-82773896 Msa0430940:CDS 45.0%
GTAGATGGACATACCTCTAG+TGG + chr3_2:82773892-82773911 Msa0430940:CDS 45.0%
!! CTCTGAGGTATAACCACTAG+AGG - chr3_2:82773908-82773927 None:intergenic 45.0%
CTCTAGTGGTTATACCTCAG+AGG + chr3_2:82773906-82773925 Msa0430940:CDS 45.0%
! ACACATGTTTTGCTCCTCTG+AGG - chr3_2:82773923-82773942 None:intergenic 45.0%
AGAGGAGCAAAACATGTGTG+AGG + chr3_2:82773924-82773943 Msa0430940:CDS 45.0%
ATGTGTGAGGAAAACAGTGG+AGG + chr3_2:82773937-82773956 Msa0430940:CDS 45.0%
ACTGTGTCTCTCAACTCCAA+TGG + chr3_2:82773982-82774001 Msa0430940:CDS 45.0%
ATCCTCAAAGCCTCTATGCA+AGG + chr3_2:82774037-82774056 Msa0430940:CDS 45.0%
TCCTCAAAGCCTCTATGCAA+GGG + chr3_2:82774038-82774057 Msa0430940:CDS 45.0%
GAAAAGAAGGCCACATGCTA+TGG - chr3_2:82774136-82774155 None:intergenic 45.0%
!! ATGGTGGTGGAGAAATCTTC+CGG - chr3_2:82774715-82774734 None:intergenic 45.0%
CTTGGAGCTATCCCTGATGA+TGG + chr3_2:82773151-82773170 Msa0430940:CDS 50.0%
!! CTATCCCTGATGATGGCGAA+TGG + chr3_2:82773158-82773177 Msa0430940:CDS 50.0%
CATTCCCATTCGCCATCATC+AGG - chr3_2:82773166-82773185 None:intergenic 50.0%
GATCAAACCTCGCTTCTGCT+TGG + chr3_2:82773241-82773260 Msa0430940:CDS 50.0%
GTTTCCCTCAGCTTCAGAAG+GGG - chr3_2:82773308-82773327 None:intergenic 50.0%
ACCCTTGCATAGAGGCTTTG+AGG - chr3_2:82774042-82774061 None:intergenic 50.0%
AATCTCGCCATGCCATCAAG+GGG - chr3_2:82774184-82774203 None:intergenic 50.0%
GAATCTCGCCATGCCATCAA+GGG - chr3_2:82774185-82774204 None:intergenic 50.0%
CTTGGAGCTATCCCTGATGA+TGG + chr3_2:82773151-82773170 Msa0430940:CDS 50.0%
!! CTATCCCTGATGATGGCGAA+TGG + chr3_2:82773158-82773177 Msa0430940:CDS 50.0%
CATTCCCATTCGCCATCATC+AGG - chr3_2:82773166-82773185 None:intergenic 50.0%
GATCAAACCTCGCTTCTGCT+TGG + chr3_2:82773241-82773260 Msa0430940:CDS 50.0%
GTTTCCCTCAGCTTCAGAAG+GGG - chr3_2:82773308-82773327 None:intergenic 50.0%
ACCCTTGCATAGAGGCTTTG+AGG - chr3_2:82774042-82774061 None:intergenic 50.0%
AATCTCGCCATGCCATCAAG+GGG - chr3_2:82774184-82774203 None:intergenic 50.0%
GAATCTCGCCATGCCATCAA+GGG - chr3_2:82774185-82774204 None:intergenic 50.0%
!! TTGCTCCCCTTCTGAAGCTG+AGG + chr3_2:82773300-82773319 Msa0430940:CDS 55.0%
!! TGCTCCCCTTCTGAAGCTGA+GGG + chr3_2:82773301-82773320 Msa0430940:CDS 55.0%
TGGTCACACTAGCCCCTTGA+TGG + chr3_2:82774169-82774188 Msa0430940:intron 55.0%
! ACACTAGCCCCTTGATGGCA+TGG + chr3_2:82774174-82774193 Msa0430940:intron 55.0%
CGAATCTCGCCATGCCATCA+AGG - chr3_2:82774186-82774205 None:intergenic 55.0%
!! TTGCTCCCCTTCTGAAGCTG+AGG + chr3_2:82773300-82773319 Msa0430940:CDS 55.0%
!! TGCTCCCCTTCTGAAGCTGA+GGG + chr3_2:82773301-82773320 Msa0430940:CDS 55.0%
TGGTCACACTAGCCCCTTGA+TGG + chr3_2:82774169-82774188 Msa0430940:intron 55.0%
! ACACTAGCCCCTTGATGGCA+TGG + chr3_2:82774174-82774193 Msa0430940:intron 55.0%
CGAATCTCGCCATGCCATCA+AGG - chr3_2:82774186-82774205 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 82773142 82774736 82773142 ID=Msa0430940;Name=Msa0430940
chr3_2 mRNA 82773142 82774736 82773142 ID=Msa0430940-mRNA-1;Parent=Msa0430940;Name=Msa0430940-mRNA-1;_AED=0.12;_eAED=0.13;_QI=0|0|0|1|1|1|5|0|315
chr3_2 exon 82773142 82773603 82773142 ID=Msa0430940-mRNA-1:exon:23008;Parent=Msa0430940-mRNA-1
chr3_2 exon 82773805 82774059 82773805 ID=Msa0430940-mRNA-1:exon:23009;Parent=Msa0430940-mRNA-1
chr3_2 exon 82774284 82774349 82774284 ID=Msa0430940-mRNA-1:exon:23010;Parent=Msa0430940-mRNA-1
chr3_2 exon 82774449 82774514 82774449 ID=Msa0430940-mRNA-1:exon:23011;Parent=Msa0430940-mRNA-1
chr3_2 exon 82774638 82774736 82774638 ID=Msa0430940-mRNA-1:exon:23012;Parent=Msa0430940-mRNA-1
chr3_2 CDS 82773142 82773603 82773142 ID=Msa0430940-mRNA-1:cds;Parent=Msa0430940-mRNA-1
chr3_2 CDS 82773805 82774059 82773805 ID=Msa0430940-mRNA-1:cds;Parent=Msa0430940-mRNA-1
chr3_2 CDS 82774284 82774349 82774284 ID=Msa0430940-mRNA-1:cds;Parent=Msa0430940-mRNA-1
chr3_2 CDS 82774449 82774514 82774449 ID=Msa0430940-mRNA-1:cds;Parent=Msa0430940-mRNA-1
chr3_2 CDS 82774638 82774736 82774638 ID=Msa0430940-mRNA-1:cds;Parent=Msa0430940-mRNA-1
Gene Sequence

>Msa0430940

ATGGAAACACTTGGAGCTATCCCTGATGATGGCGAATGGGAATGCTTCCGCAGAATATTTGCAACTGAAGACCATGATGACTCTCCACCACAATTACTTGATCAAACCTCGCTTCTGCTTGGAGAAAATAATGGGAACTTTGGAGTACAATCCATGTTTTGCTCCCCTTCTGAAGCTGAGGGAAACATGAATACTAATGTGTTTTATTCTTTTGATTCTCACATCAACTATAATTCACCAGAAAGTAATCATAATACTCAAGGTCACACAAACTACTATTTTGATTGTTCTGATCATGTGGTAGCTAATAATAGTGACAGAACAGAGAATTTTGATCACAATCAAGTCCAACCTAAGTTGAAGCTGAAAAGGATGCTTGATGTGCCAGAATTTCAGGTGCATGTAGAAGATAAGATAAACTCATGTGGGAACCCTAAGAAAAAACCTCGTGCTGCAAAAGATGTGCAAAGATGCATGAAAAATTCAGAGTCCAAGAAGAGCAAGAAGGTTGATAGAAATGAAAACAAGGCAGAAGAAGCCAATGCAAGTGTAGATGGACATACCTCTAGTGGTTATACCTCAGAGGAGCAAAACATGTGTGAGGAAAACAGTGGAGGAGCTTCTGCAGCATCTAAATCAACTGTGTCTCTCAACTCCAATGGAAAGAAAAGAGCTAGTAGAGGATCAGCAACAGATCCTCAAAGCCTCTATGCAAGGAAAAGAAGGGAGAAAATAAACGAGAGACTGAGAACTCTACAAAATCTTGTACCAAATGGGACAAAGGTTGATATAAGCACAATGCTTGAAGATGCAATCCAATATGTGAAATTTCTGCAGCTCCAAATCAAGCTTCTAAGCTCTGATGATCTGTGGATGTATGCCCCAATTGCTTATAATGGACTTGACATTGGATTCAATCTCAACCGGAAGATTTCTCCACCACCATGA

Protein sequence

>Msa0430940

METLGAIPDDGEWECFRRIFATEDHDDSPPQLLDQTSLLLGENNGNFGVQSMFCSPSEAEGNMNTNVFYSFDSHINYNSPESNHNTQGHTNYYFDCSDHVVANNSDRTENFDHNQVQPKLKLKRMLDVPEFQVHVEDKINSCGNPKKKPRAAKDVQRCMKNSESKKSKKVDRNENKAEEANASVDGHTSSGYTSEEQNMCEENSGGASAASKSTVSLNSNGKKRASRGSATDPQSLYARKRREKINERLRTLQNLVPNGTKVDISTMLEDAIQYVKFLQLQIKLLSSDDLWMYAPIAYNGLDIGFNLNRKISPPP*