Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0430940 | XP_013461773.1 | 89.720 | 321 | 27 | 1 | 1 | 315 | 1 | 321 | 0.0 | 600 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0430940 | sp|Q7XHI9|BH084_ARATH | 50.230 | 217 | 74 | 6 | 109 | 307 | 121 | 321 | 2.66e-55 | 185 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0430940 | A0A072V390 | 89.720 | 321 | 27 | 1 | 1 | 315 | 1 | 321 | 0.0 | 600 |
Gene ID | Type | Classification |
---|---|---|
Msa0430940 | TF | bHLH |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0430940 | MtrunA17_Chr3g0134741 | 89.720 | 321 | 27 | 1 | 1 | 315 | 1 | 321 | 0.0 | 600 |
Msa0430940 | MtrunA17_Chr1g0152651 | 49.176 | 364 | 104 | 12 | 1 | 298 | 1 | 349 | 6.96e-86 | 262 |
Msa0430940 | MtrunA17_Chr5g0393721 | 40.237 | 338 | 151 | 15 | 1 | 313 | 1 | 312 | 1.41e-54 | 181 |
Msa0430940 | MtrunA17_Chr1g0207301 | 51.445 | 173 | 63 | 4 | 147 | 308 | 211 | 373 | 3.89e-46 | 160 |
Msa0430940 | MtrunA17_Chr1g0207311 | 78.161 | 87 | 19 | 0 | 222 | 308 | 195 | 281 | 2.18e-43 | 150 |
Msa0430940 | MtrunA17_Chr5g0435021 | 58.571 | 70 | 29 | 0 | 222 | 291 | 217 | 286 | 1.59e-22 | 95.5 |
Msa0430940 | MtrunA17_Chr4g0074161 | 52.632 | 76 | 36 | 0 | 222 | 297 | 205 | 280 | 2.44e-18 | 84.7 |
Msa0430940 | MtrunA17_Chr8g0384141 | 60.606 | 66 | 25 | 1 | 222 | 287 | 114 | 178 | 1.11e-17 | 81.3 |
Msa0430940 | MtrunA17_Chr1g0190731 | 46.341 | 82 | 44 | 0 | 222 | 303 | 192 | 273 | 3.58e-16 | 78.2 |
Msa0430940 | MtrunA17_Chr3g0134001 | 53.968 | 63 | 29 | 0 | 223 | 285 | 171 | 233 | 6.97e-16 | 76.3 |
Msa0430940 | MtrunA17_Chr7g0243041 | 54.545 | 55 | 25 | 0 | 230 | 284 | 33 | 87 | 8.05e-15 | 70.9 |
Msa0430940 | MtrunA17_Chr1g0153241 | 39.241 | 79 | 48 | 0 | 222 | 300 | 84 | 162 | 8.54e-14 | 70.1 |
Msa0430940 | MtrunA17_Chr1g0193321 | 45.455 | 66 | 36 | 0 | 221 | 286 | 460 | 525 | 3.15e-13 | 70.5 |
Msa0430940 | MtrunA17_Chr4g0014771 | 53.030 | 66 | 30 | 1 | 222 | 286 | 117 | 182 | 9.32e-13 | 65.9 |
Msa0430940 | MtrunA17_Chr8g0363921 | 31.847 | 157 | 88 | 5 | 139 | 286 | 69 | 215 | 2.54e-12 | 66.2 |
Msa0430940 | MtrunA17_Chr1g0182791 | 43.939 | 66 | 37 | 0 | 221 | 286 | 315 | 380 | 4.24e-12 | 66.6 |
Msa0430940 | MtrunA17_Chr4g0032951 | 39.823 | 113 | 66 | 2 | 175 | 286 | 308 | 419 | 4.56e-12 | 66.2 |
Msa0430940 | MtrunA17_Chr3g0095391 | 30.822 | 146 | 89 | 2 | 154 | 292 | 233 | 373 | 4.61e-12 | 66.6 |
Msa0430940 | MtrunA17_Chr6g0484271 | 44.318 | 88 | 44 | 2 | 204 | 286 | 132 | 219 | 6.13e-12 | 65.1 |
Msa0430940 | MtrunA17_Chr1g0174271 | 54.545 | 66 | 29 | 1 | 222 | 286 | 297 | 362 | 1.04e-11 | 65.1 |
Msa0430940 | MtrunA17_Chr7g0234761 | 30.526 | 190 | 116 | 5 | 98 | 286 | 207 | 381 | 1.05e-11 | 65.5 |
Msa0430940 | MtrunA17_Chr8g0339091 | 53.125 | 64 | 29 | 1 | 224 | 286 | 292 | 355 | 1.34e-11 | 65.1 |
Msa0430940 | MtrunA17_Chr5g0402031 | 42.188 | 64 | 37 | 0 | 236 | 299 | 118 | 181 | 1.39e-11 | 64.7 |
Msa0430940 | MtrunA17_Chr1g0152131 | 51.562 | 64 | 30 | 1 | 224 | 286 | 261 | 324 | 1.98e-11 | 64.3 |
Msa0430940 | MtrunA17_Chr7g0270871 | 46.269 | 67 | 34 | 1 | 220 | 286 | 201 | 265 | 2.15e-11 | 63.9 |
Msa0430940 | MtrunA17_Chr5g0415291 | 50.000 | 64 | 31 | 1 | 224 | 286 | 113 | 176 | 2.59e-11 | 62.8 |
Msa0430940 | MtrunA17_Chr4g0035101 | 51.562 | 64 | 30 | 1 | 224 | 286 | 144 | 207 | 3.91e-11 | 63.2 |
Msa0430940 | MtrunA17_Chr7g0231461 | 50.000 | 60 | 28 | 1 | 226 | 285 | 302 | 359 | 5.39e-11 | 63.2 |
Msa0430940 | MtrunA17_Chr3g0131771 | 53.125 | 64 | 29 | 1 | 224 | 286 | 148 | 211 | 5.92e-11 | 62.4 |
Msa0430940 | MtrunA17_Chr3g0144641 | 51.562 | 64 | 30 | 1 | 224 | 286 | 192 | 255 | 6.52e-11 | 62.8 |
Msa0430940 | MtrunA17_Chr5g0421111 | 51.562 | 64 | 30 | 1 | 224 | 286 | 366 | 429 | 6.65e-11 | 63.2 |
Msa0430940 | MtrunA17_Chr2g0329041 | 51.562 | 64 | 30 | 1 | 222 | 284 | 331 | 394 | 7.18e-11 | 62.8 |
Msa0430940 | MtrunA17_Chr8g0365941 | 51.562 | 64 | 30 | 1 | 224 | 286 | 306 | 369 | 8.34e-11 | 62.8 |
Msa0430940 | MtrunA17_Chr7g0262691 | 36.559 | 93 | 54 | 1 | 191 | 283 | 225 | 312 | 8.72e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0430940 | AT2G14760.1 | 50.230 | 217 | 74 | 6 | 109 | 307 | 121 | 321 | 2.70e-56 | 185 |
Msa0430940 | AT4G33880.1 | 59.119 | 159 | 62 | 1 | 150 | 305 | 190 | 348 | 9.92e-55 | 182 |
Msa0430940 | AT1G27740.1 | 61.486 | 148 | 40 | 3 | 162 | 308 | 121 | 252 | 4.09e-53 | 175 |
Msa0430940 | AT2G14760.3 | 47.391 | 230 | 74 | 7 | 109 | 307 | 121 | 334 | 1.18e-52 | 176 |
Msa0430940 | AT5G43175.1 | 57.931 | 145 | 52 | 3 | 165 | 308 | 81 | 217 | 7.91e-46 | 155 |
Msa0430940 | AT5G37800.1 | 61.039 | 77 | 29 | 1 | 216 | 291 | 193 | 269 | 1.45e-23 | 98.6 |
Msa0430940 | AT1G66470.1 | 52.809 | 89 | 42 | 0 | 203 | 291 | 175 | 263 | 2.81e-23 | 97.8 |
Msa0430940 | AT2G24260.2 | 51.613 | 93 | 43 | 1 | 207 | 297 | 17 | 109 | 1.07e-21 | 92.4 |
Msa0430940 | AT4G30980.1 | 47.573 | 103 | 47 | 2 | 189 | 290 | 101 | 197 | 3.46e-21 | 92.0 |
Msa0430940 | AT4G30980.2 | 47.573 | 103 | 47 | 2 | 189 | 290 | 149 | 245 | 4.60e-21 | 92.4 |
Msa0430940 | AT2G24260.1 | 51.613 | 93 | 43 | 1 | 207 | 297 | 120 | 212 | 7.04e-21 | 92.0 |
Msa0430940 | AT5G58010.1 | 46.875 | 96 | 47 | 2 | 222 | 313 | 98 | 193 | 2.21e-19 | 87.0 |
Msa0430940 | AT3G21330.1 | 52.381 | 63 | 30 | 0 | 223 | 285 | 269 | 331 | 2.69e-15 | 76.3 |
Msa0430940 | AT5G50915.1 | 34.637 | 179 | 77 | 7 | 170 | 314 | 57 | 229 | 7.86e-15 | 73.9 |
Msa0430940 | AT5G50915.2 | 34.637 | 179 | 77 | 7 | 170 | 314 | 57 | 229 | 7.86e-15 | 73.9 |
Msa0430940 | AT5G50915.3 | 34.637 | 179 | 77 | 7 | 170 | 314 | 57 | 229 | 9.03e-15 | 73.6 |
Msa0430940 | AT5G50915.4 | 34.637 | 179 | 77 | 7 | 170 | 314 | 57 | 229 | 9.03e-15 | 73.6 |
Msa0430940 | AT5G01305.1 | 49.180 | 61 | 31 | 0 | 222 | 282 | 36 | 96 | 1.31e-14 | 71.2 |
Msa0430940 | AT4G00120.1 | 50.000 | 54 | 27 | 0 | 232 | 285 | 121 | 174 | 3.49e-14 | 70.5 |
Msa0430940 | AT1G25330.1 | 50.617 | 81 | 39 | 1 | 224 | 303 | 105 | 185 | 4.29e-13 | 67.8 |
Msa0430940 | AT1G09530.3 | 37.895 | 95 | 53 | 1 | 201 | 295 | 321 | 409 | 6.12e-13 | 69.7 |
Msa0430940 | AT1G09530.2 | 37.895 | 95 | 53 | 1 | 201 | 295 | 321 | 409 | 6.12e-13 | 69.7 |
Msa0430940 | AT1G09530.5 | 37.895 | 95 | 53 | 1 | 201 | 295 | 321 | 409 | 6.12e-13 | 69.7 |
Msa0430940 | AT1G09530.1 | 37.895 | 95 | 53 | 1 | 201 | 295 | 321 | 409 | 6.12e-13 | 69.7 |
Msa0430940 | AT1G09530.4 | 37.895 | 95 | 53 | 1 | 201 | 295 | 321 | 409 | 6.12e-13 | 69.7 |
Msa0430940 | AT1G09530.6 | 37.895 | 95 | 53 | 1 | 201 | 295 | 321 | 409 | 6.12e-13 | 69.7 |
Msa0430940 | AT4G00050.2 | 39.423 | 104 | 51 | 3 | 183 | 286 | 77 | 168 | 9.90e-13 | 67.8 |
Msa0430940 | AT1G51140.1 | 53.846 | 65 | 29 | 1 | 222 | 285 | 303 | 367 | 1.15e-12 | 68.6 |
Msa0430940 | AT2G20180.7 | 32.031 | 128 | 69 | 3 | 196 | 314 | 185 | 303 | 1.39e-12 | 68.2 |
Msa0430940 | AT2G20180.1 | 32.031 | 128 | 69 | 3 | 196 | 314 | 185 | 303 | 1.39e-12 | 68.2 |
Msa0430940 | AT2G20180.5 | 32.031 | 128 | 69 | 3 | 196 | 314 | 185 | 303 | 1.39e-12 | 68.2 |
Msa0430940 | AT2G20180.4 | 32.031 | 128 | 69 | 3 | 196 | 314 | 256 | 374 | 1.54e-12 | 68.2 |
Msa0430940 | AT2G20180.6 | 32.031 | 128 | 69 | 3 | 196 | 314 | 256 | 374 | 1.54e-12 | 68.2 |
Msa0430940 | AT2G20180.2 | 32.031 | 128 | 69 | 3 | 196 | 314 | 256 | 374 | 1.54e-12 | 68.2 |
Msa0430940 | AT2G20180.3 | 32.031 | 128 | 69 | 3 | 196 | 314 | 256 | 374 | 1.54e-12 | 68.2 |
Msa0430940 | AT1G18400.2 | 54.688 | 64 | 28 | 1 | 224 | 286 | 146 | 209 | 1.69e-12 | 66.6 |
Msa0430940 | AT1G18400.1 | 54.688 | 64 | 28 | 1 | 224 | 286 | 146 | 209 | 2.17e-12 | 66.6 |
Msa0430940 | AT4G00050.1 | 39.423 | 104 | 51 | 3 | 183 | 286 | 179 | 270 | 2.22e-12 | 67.8 |
Msa0430940 | AT4G00050.3 | 39.423 | 104 | 51 | 3 | 183 | 286 | 179 | 270 | 2.46e-12 | 67.4 |
Msa0430940 | AT2G46970.2 | 30.645 | 124 | 80 | 2 | 195 | 313 | 165 | 287 | 4.21e-12 | 66.6 |
Msa0430940 | AT4G09180.1 | 48.529 | 68 | 34 | 1 | 222 | 288 | 183 | 250 | 4.63e-12 | 65.5 |
Msa0430940 | AT2G46970.1 | 30.645 | 124 | 80 | 2 | 195 | 313 | 196 | 318 | 4.69e-12 | 66.6 |
Msa0430940 | AT2G46970.3 | 30.645 | 124 | 80 | 2 | 195 | 313 | 174 | 296 | 4.79e-12 | 66.6 |
Msa0430940 | AT1G35460.1 | 50.000 | 66 | 32 | 1 | 222 | 286 | 180 | 245 | 8.82e-12 | 64.7 |
Msa0430940 | AT4G28790.1 | 45.946 | 74 | 39 | 1 | 227 | 300 | 275 | 347 | 1.17e-11 | 65.5 |
Msa0430940 | AT1G73830.1 | 51.562 | 64 | 30 | 1 | 224 | 286 | 148 | 211 | 1.24e-11 | 64.3 |
Msa0430940 | AT1G73830.2 | 51.562 | 64 | 30 | 1 | 224 | 286 | 148 | 211 | 1.25e-11 | 64.3 |
Msa0430940 | AT4G28815.2 | 38.776 | 98 | 55 | 2 | 206 | 298 | 47 | 144 | 1.29e-11 | 63.9 |
Msa0430940 | AT4G28815.1 | 38.776 | 98 | 55 | 2 | 206 | 298 | 123 | 220 | 2.00e-11 | 64.3 |
Msa0430940 | AT2G18300.2 | 36.434 | 129 | 73 | 3 | 159 | 286 | 129 | 249 | 2.19e-11 | 64.3 |
Msa0430940 | AT2G18300.1 | 36.434 | 129 | 73 | 3 | 159 | 286 | 129 | 249 | 2.31e-11 | 64.3 |
Msa0430940 | AT1G68920.3 | 32.237 | 152 | 101 | 2 | 136 | 286 | 216 | 366 | 2.36e-11 | 64.7 |
Msa0430940 | AT2G18300.3 | 36.434 | 129 | 73 | 3 | 159 | 286 | 129 | 249 | 2.44e-11 | 64.3 |
Msa0430940 | AT5G67110.1 | 40.404 | 99 | 45 | 3 | 219 | 315 | 81 | 167 | 2.44e-11 | 62.8 |
Msa0430940 | AT3G07340.1 | 53.125 | 64 | 29 | 1 | 224 | 286 | 259 | 322 | 2.91e-11 | 64.3 |
Msa0430940 | AT3G07340.2 | 53.125 | 64 | 29 | 1 | 224 | 286 | 259 | 322 | 3.11e-11 | 64.3 |
Msa0430940 | AT4G36930.1 | 31.034 | 116 | 79 | 1 | 200 | 314 | 167 | 282 | 3.32e-11 | 63.9 |
Msa0430940 | AT1G26260.3 | 53.125 | 64 | 29 | 1 | 224 | 286 | 173 | 236 | 3.85e-11 | 63.5 |
Msa0430940 | AT2G42280.1 | 52.308 | 65 | 30 | 1 | 222 | 285 | 278 | 342 | 4.08e-11 | 63.5 |
Msa0430940 | AT5G48560.1 | 53.125 | 64 | 29 | 1 | 224 | 286 | 302 | 365 | 4.11e-11 | 63.9 |
Msa0430940 | AT1G26260.4 | 53.125 | 64 | 29 | 1 | 224 | 286 | 224 | 287 | 4.28e-11 | 63.5 |
Msa0430940 | AT1G26260.1 | 53.125 | 64 | 29 | 1 | 224 | 286 | 224 | 287 | 4.28e-11 | 63.5 |
Msa0430940 | AT1G26260.6 | 53.125 | 64 | 29 | 1 | 224 | 286 | 224 | 287 | 4.28e-11 | 63.5 |
Msa0430940 | AT1G26260.2 | 53.125 | 64 | 29 | 1 | 224 | 286 | 224 | 287 | 4.28e-11 | 63.5 |
Msa0430940 | AT5G48560.2 | 53.125 | 64 | 29 | 1 | 224 | 286 | 302 | 365 | 4.51e-11 | 63.9 |
Msa0430940 | AT1G26260.5 | 53.125 | 64 | 29 | 1 | 224 | 286 | 202 | 265 | 4.70e-11 | 63.5 |
Msa0430940 | AT1G59640.1 | 50.000 | 64 | 31 | 1 | 224 | 286 | 137 | 200 | 4.96e-11 | 62.8 |
Msa0430940 | AT1G10120.2 | 51.562 | 64 | 30 | 1 | 224 | 286 | 207 | 270 | 5.03e-11 | 63.5 |
Msa0430940 | AT1G10120.1 | 51.562 | 64 | 30 | 1 | 224 | 286 | 207 | 270 | 5.03e-11 | 63.5 |
Msa0430940 | AT2G20180.8 | 37.079 | 89 | 51 | 1 | 196 | 284 | 256 | 339 | 5.81e-11 | 63.2 |
Msa0430940 | AT4G34530.1 | 51.562 | 64 | 30 | 1 | 224 | 286 | 173 | 236 | 7.56e-11 | 62.8 |
Msa0430940 | AT3G23690.1 | 50.000 | 64 | 31 | 1 | 224 | 286 | 192 | 255 | 9.04e-11 | 62.8 |
Find 58 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCAACCTTCTTGCTCTTCT+TGG | 0.125181 | 3_2:-82773833 | None:intergenic |
TGAGTATTATGATTACTTTC+TGG | 0.228641 | 3_2:-82773379 | None:intergenic |
GCTTGATGTGCCAGAATTTC+AGG | 0.228928 | 3_2:+82773516 | Msa0430940:CDS |
GCTGCAGAAATTTCACATAT+TGG | 0.264015 | 3_2:-82774481 | None:intergenic |
ACTCATATATTACCTTGATT+TGG | 0.291701 | 3_2:-82774505 | None:intergenic |
TCTACATGCACCTGAAATTC+TGG | 0.295024 | 3_2:-82773526 | None:intergenic |
TAAATTACCTTTGTCCCATT+TGG | 0.321779 | 3_2:-82774335 | None:intergenic |
TCAAGTCCATTATAAGCAAT+TGG | 0.332783 | 3_2:-82774671 | None:intergenic |
TATGCCCCAATTGCTTATAA+TGG | 0.346115 | 3_2:+82774665 | Msa0430940:CDS |
CTTCTGCTTGGAGAAAATAA+TGG | 0.350452 | 3_2:+82773253 | Msa0430940:CDS |
CAAGTCCATTATAAGCAATT+GGG | 0.382500 | 3_2:-82774670 | None:intergenic |
CTACAAAATCTTGTACCAAA+TGG | 0.385534 | 3_2:+82774320 | Msa0430940:CDS |
CATTCCCATTCGCCATCATC+AGG | 0.393250 | 3_2:-82773163 | None:intergenic |
ACCCTTGCATAGAGGCTTTG+AGG | 0.393741 | 3_2:-82774039 | None:intergenic |
TACAAAATCTTGTACCAAAT+GGG | 0.416760 | 3_2:+82774321 | Msa0430940:CDS |
GGAGAAAATAATGGGAACTT+TGG | 0.422902 | 3_2:+82773262 | Msa0430940:CDS |
GAAGCCAATGCAAGTGTAGA+TGG | 0.429354 | 3_2:+82773877 | Msa0430940:CDS |
TTCTGCTTGGAGAAAATAAT+GGG | 0.435352 | 3_2:+82773254 | Msa0430940:CDS |
AACCTAAGTTGAAGCTGAAA+AGG | 0.448825 | 3_2:+82773491 | Msa0430940:CDS |
ACATTGGATTCAATCTCAAC+CGG | 0.458816 | 3_2:+82774693 | Msa0430940:CDS |
TTGCTCCCCTTCTGAAGCTG+AGG | 0.486357 | 3_2:+82773300 | Msa0430940:CDS |
GATCAAACCTCGCTTCTGCT+TGG | 0.495958 | 3_2:+82773241 | Msa0430940:CDS |
GCTTATAATGGACTTGACAT+TGG | 0.507048 | 3_2:+82774677 | Msa0430940:CDS |
ATTTCTGCAGCTCCAAATCA+AGG | 0.513225 | 3_2:+82774493 | Msa0430940:CDS |
TATCCCTGATGATGGCGAAT+GGG | 0.522217 | 3_2:+82773159 | Msa0430940:CDS |
ATGGTGGTGGAGAAATCTTC+CGG | 0.539717 | 3_2:-82774712 | None:intergenic |
ATCCTCAAAGCCTCTATGCA+AGG | 0.540493 | 3_2:+82774037 | Msa0430940:CDS |
ATGTTTCCCTCAGCTTCAGA+AGG | 0.542520 | 3_2:-82773307 | None:intergenic |
CTTGGAGCTATCCCTGATGA+TGG | 0.545545 | 3_2:+82773151 | Msa0430940:CDS |
TGCTCCCCTTCTGAAGCTGA+GGG | 0.548801 | 3_2:+82773301 | Msa0430940:CDS |
AAGATAAGATAAACTCATGT+GGG | 0.556515 | 3_2:+82773548 | Msa0430940:CDS |
ACTGTGTCTCTCAACTCCAA+TGG | 0.558276 | 3_2:+82773982 | Msa0430940:CDS |
ATGTCCATCTACACTTGCAT+TGG | 0.565311 | 3_2:-82773881 | None:intergenic |
TGATAATTACCCTTGCATAG+AGG | 0.574539 | 3_2:-82774047 | None:intergenic |
TGTTTCCCTCAGCTTCAGAA+GGG | 0.575825 | 3_2:-82773306 | None:intergenic |
CTATCCCTGATGATGGCGAA+TGG | 0.588808 | 3_2:+82773158 | Msa0430940:CDS |
GAAGATAAGATAAACTCATG+TGG | 0.590178 | 3_2:+82773547 | Msa0430940:CDS |
ATTGTGGTGGAGAGTCATCA+TGG | 0.590276 | 3_2:-82773213 | None:intergenic |
TCCTCAAAGCCTCTATGCAA+GGG | 0.593714 | 3_2:+82774038 | Msa0430940:CDS |
TTCAGAAGGGGAGCAAAACA+TGG | 0.599755 | 3_2:-82773293 | None:intergenic |
TCTTGTACCAAATGGGACAA+AGG | 0.600952 | 3_2:+82774328 | Msa0430940:CDS |
CTCTGAGGTATAACCACTAG+AGG | 0.615332 | 3_2:-82773905 | None:intergenic |
GAAAGTAATCATAATACTCA+AGG | 0.616654 | 3_2:+82773382 | Msa0430940:CDS |
AAGTCCATTATAAGCAATTG+GGG | 0.617408 | 3_2:-82774669 | None:intergenic |
GTTTCCCTCAGCTTCAGAAG+GGG | 0.626059 | 3_2:-82773305 | None:intergenic |
GGAAAGAAAAGAGCTAGTAG+AGG | 0.626774 | 3_2:+82774003 | Msa0430940:CDS |
CTCTAGTGGTTATACCTCAG+AGG | 0.631424 | 3_2:+82773906 | Msa0430940:CDS |
TTCTAAGCTCTGATGATCTG+TGG | 0.632585 | 3_2:+82774639 | Msa0430940:CDS |
GAGGTTTGATCAAGTAATTG+TGG | 0.634212 | 3_2:-82773229 | None:intergenic |
AGAGTCCAAGAAGAGCAAGA+AGG | 0.635660 | 3_2:+82773828 | Msa0430940:CDS |
GTTTGATCAAGTAATTGTGG+TGG | 0.639569 | 3_2:-82773226 | None:intergenic |
ATTCCCATTCGCCATCATCA+GGG | 0.639610 | 3_2:-82773162 | None:intergenic |
GTAGATGGACATACCTCTAG+TGG | 0.644629 | 3_2:+82773892 | Msa0430940:CDS |
CTTCAGTTGCAAATATTCTG+CGG | 0.648235 | 3_2:-82773189 | None:intergenic |
GGTTGATAGAAATGAAAACA+AGG | 0.650583 | 3_2:+82773849 | Msa0430940:CDS |
AGAGGAGCAAAACATGTGTG+AGG | 0.671006 | 3_2:+82773924 | Msa0430940:CDS |
ATGTGTGAGGAAAACAGTGG+AGG | 0.712518 | 3_2:+82773937 | Msa0430940:CDS |
AACATGTGTGAGGAAAACAG+TGG | 0.786485 | 3_2:+82773934 | Msa0430940:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATCATTATTACTAATTAAAG+TGG | - | chr3_2:82773758-82773777 | None:intergenic | 15.0% |
!!! | AATAATGATTTGAAATTTTG+TGG | + | chr3_2:82773769-82773788 | Msa0430940:intron | 15.0% |
!! | ATCATTATTACTAATTAAAG+TGG | - | chr3_2:82773758-82773777 | None:intergenic | 15.0% |
!!! | AATAATGATTTGAAATTTTG+TGG | + | chr3_2:82773769-82773788 | Msa0430940:intron | 15.0% |
!!! | TTTGAATTTTACAGAAAAGA+AGG | + | chr3_2:82774270-82774289 | Msa0430940:intron | 20.0% |
!!! | TTGAATTTTACAGAAAAGAA+GGG | + | chr3_2:82774271-82774290 | Msa0430940:intron | 20.0% |
!!! | AATGTTTTGCATTTTAAAGA+GGG | + | chr3_2:82774368-82774387 | Msa0430940:intron | 20.0% |
!! | GAGATGTATAATTTGATATA+TGG | + | chr3_2:82774412-82774431 | Msa0430940:intron | 20.0% |
!! | TGTATAATTTGATATATGGA+TGG | + | chr3_2:82774416-82774435 | Msa0430940:intron | 20.0% |
!! | ATTTCTGTTTAGAAATATCA+AGG | + | chr3_2:82774554-82774573 | Msa0430940:intron | 20.0% |
!!! | TTTGAATTTTACAGAAAAGA+AGG | + | chr3_2:82774270-82774289 | Msa0430940:intron | 20.0% |
!!! | TTGAATTTTACAGAAAAGAA+GGG | + | chr3_2:82774271-82774290 | Msa0430940:intron | 20.0% |
!!! | AATGTTTTGCATTTTAAAGA+GGG | + | chr3_2:82774368-82774387 | Msa0430940:intron | 20.0% |
!! | GAGATGTATAATTTGATATA+TGG | + | chr3_2:82774412-82774431 | Msa0430940:intron | 20.0% |
!! | TGTATAATTTGATATATGGA+TGG | + | chr3_2:82774416-82774435 | Msa0430940:intron | 20.0% |
!! | ATTTCTGTTTAGAAATATCA+AGG | + | chr3_2:82774554-82774573 | Msa0430940:intron | 20.0% |
! | TGAGTATTATGATTACTTTC+TGG | - | chr3_2:82773382-82773401 | None:intergenic | 25.0% |
! | GAAAGTAATCATAATACTCA+AGG | + | chr3_2:82773382-82773401 | Msa0430940:CDS | 25.0% |
! | AAGATAAGATAAACTCATGT+GGG | + | chr3_2:82773548-82773567 | Msa0430940:CDS | 25.0% |
! | TCATATGATATTTACTCCAT+CGG | + | chr3_2:82773630-82773649 | Msa0430940:intron | 25.0% |
!!! | TAATTAATTTGTCAGCTTAG+CGG | + | chr3_2:82773654-82773673 | Msa0430940:intron | 25.0% |
!! | TTGACATTTTGTAATCTCAA+AGG | + | chr3_2:82773685-82773704 | Msa0430940:intron | 25.0% |
! | AAGAGGAATAGTTAAACAAA+AGG | - | chr3_2:82774093-82774112 | None:intergenic | 25.0% |
! | TACAAAATCTTGTACCAAAT+GGG | + | chr3_2:82774321-82774340 | Msa0430940:CDS | 25.0% |
!!! | GAATGTTTTGCATTTTAAAG+AGG | + | chr3_2:82774367-82774386 | Msa0430940:intron | 25.0% |
! | ACTCATATATTACCTTGATT+TGG | - | chr3_2:82774508-82774527 | None:intergenic | 25.0% |
! | TGAGTATTATGATTACTTTC+TGG | - | chr3_2:82773382-82773401 | None:intergenic | 25.0% |
! | GAAAGTAATCATAATACTCA+AGG | + | chr3_2:82773382-82773401 | Msa0430940:CDS | 25.0% |
! | AAGATAAGATAAACTCATGT+GGG | + | chr3_2:82773548-82773567 | Msa0430940:CDS | 25.0% |
! | TCATATGATATTTACTCCAT+CGG | + | chr3_2:82773630-82773649 | Msa0430940:intron | 25.0% |
!!! | TAATTAATTTGTCAGCTTAG+CGG | + | chr3_2:82773654-82773673 | Msa0430940:intron | 25.0% |
!! | TTGACATTTTGTAATCTCAA+AGG | + | chr3_2:82773685-82773704 | Msa0430940:intron | 25.0% |
! | AAGAGGAATAGTTAAACAAA+AGG | - | chr3_2:82774093-82774112 | None:intergenic | 25.0% |
! | TACAAAATCTTGTACCAAAT+GGG | + | chr3_2:82774321-82774340 | Msa0430940:CDS | 25.0% |
!!! | GAATGTTTTGCATTTTAAAG+AGG | + | chr3_2:82774367-82774386 | Msa0430940:intron | 25.0% |
! | ACTCATATATTACCTTGATT+TGG | - | chr3_2:82774508-82774527 | None:intergenic | 25.0% |
TTCTGCTTGGAGAAAATAAT+GGG | + | chr3_2:82773254-82773273 | Msa0430940:CDS | 30.0% | |
!! | TTTTGATTGTTCTGATCATG+TGG | + | chr3_2:82773420-82773439 | Msa0430940:CDS | 30.0% |
GAAGATAAGATAAACTCATG+TGG | + | chr3_2:82773547-82773566 | Msa0430940:CDS | 30.0% | |
CTGACAAATTAATTAACCGA+TGG | - | chr3_2:82773649-82773668 | None:intergenic | 30.0% | |
ACTAATTAAAGTGGTACTAG+TGG | - | chr3_2:82773749-82773768 | None:intergenic | 30.0% | |
! | ATTTTGTGGTTTCCAAATTC+AGG | + | chr3_2:82773783-82773802 | Msa0430940:intron | 30.0% |
!! | GGTTGATAGAAATGAAAACA+AGG | + | chr3_2:82773849-82773868 | Msa0430940:CDS | 30.0% |
ACAGAATGGAGATTAAAAAG+AGG | - | chr3_2:82774110-82774129 | None:intergenic | 30.0% | |
TGCTATATACTTCATTCACT+TGG | - | chr3_2:82774227-82774246 | None:intergenic | 30.0% | |
CTACAAAATCTTGTACCAAA+TGG | + | chr3_2:82774320-82774339 | Msa0430940:CDS | 30.0% | |
TAAATTACCTTTGTCCCATT+TGG | - | chr3_2:82774338-82774357 | None:intergenic | 30.0% | |
! | GGGACAAAGGTAATTTATTT+TGG | + | chr3_2:82774341-82774360 | Msa0430940:intron | 30.0% |
AAGTCCATTATAAGCAATTG+GGG | - | chr3_2:82774672-82774691 | None:intergenic | 30.0% | |
CAAGTCCATTATAAGCAATT+GGG | - | chr3_2:82774673-82774692 | None:intergenic | 30.0% | |
TCAAGTCCATTATAAGCAAT+TGG | - | chr3_2:82774674-82774693 | None:intergenic | 30.0% | |
TTCTGCTTGGAGAAAATAAT+GGG | + | chr3_2:82773254-82773273 | Msa0430940:CDS | 30.0% | |
!! | TTTTGATTGTTCTGATCATG+TGG | + | chr3_2:82773420-82773439 | Msa0430940:CDS | 30.0% |
GAAGATAAGATAAACTCATG+TGG | + | chr3_2:82773547-82773566 | Msa0430940:CDS | 30.0% | |
CTGACAAATTAATTAACCGA+TGG | - | chr3_2:82773649-82773668 | None:intergenic | 30.0% | |
ACTAATTAAAGTGGTACTAG+TGG | - | chr3_2:82773749-82773768 | None:intergenic | 30.0% | |
! | ATTTTGTGGTTTCCAAATTC+AGG | + | chr3_2:82773783-82773802 | Msa0430940:intron | 30.0% |
!! | GGTTGATAGAAATGAAAACA+AGG | + | chr3_2:82773849-82773868 | Msa0430940:CDS | 30.0% |
ACAGAATGGAGATTAAAAAG+AGG | - | chr3_2:82774110-82774129 | None:intergenic | 30.0% | |
TGCTATATACTTCATTCACT+TGG | - | chr3_2:82774227-82774246 | None:intergenic | 30.0% | |
CTACAAAATCTTGTACCAAA+TGG | + | chr3_2:82774320-82774339 | Msa0430940:CDS | 30.0% | |
TAAATTACCTTTGTCCCATT+TGG | - | chr3_2:82774338-82774357 | None:intergenic | 30.0% | |
! | GGGACAAAGGTAATTTATTT+TGG | + | chr3_2:82774341-82774360 | Msa0430940:intron | 30.0% |
AAGTCCATTATAAGCAATTG+GGG | - | chr3_2:82774672-82774691 | None:intergenic | 30.0% | |
CAAGTCCATTATAAGCAATT+GGG | - | chr3_2:82774673-82774692 | None:intergenic | 30.0% | |
TCAAGTCCATTATAAGCAAT+TGG | - | chr3_2:82774674-82774693 | None:intergenic | 30.0% | |
CTTCAGTTGCAAATATTCTG+CGG | - | chr3_2:82773192-82773211 | None:intergenic | 35.0% | |
GTTTGATCAAGTAATTGTGG+TGG | - | chr3_2:82773229-82773248 | None:intergenic | 35.0% | |
GAGGTTTGATCAAGTAATTG+TGG | - | chr3_2:82773232-82773251 | None:intergenic | 35.0% | |
CTTCTGCTTGGAGAAAATAA+TGG | + | chr3_2:82773253-82773272 | Msa0430940:CDS | 35.0% | |
! | GGAGAAAATAATGGGAACTT+TGG | + | chr3_2:82773262-82773281 | Msa0430940:CDS | 35.0% |
! | TTTTCAGCTTCAACTTAGGT+TGG | - | chr3_2:82773492-82773511 | None:intergenic | 35.0% |
! | AACCTAAGTTGAAGCTGAAA+AGG | + | chr3_2:82773491-82773510 | Msa0430940:CDS | 35.0% |
! | ATCCTTTTCAGCTTCAACTT+AGG | - | chr3_2:82773496-82773515 | None:intergenic | 35.0% |
CATATTACAATCGTCTCTCA+TGG | - | chr3_2:82773725-82773744 | None:intergenic | 35.0% | |
!! | ACTAGCTCTTTTCTTTCCAT+TGG | - | chr3_2:82774001-82774020 | None:intergenic | 35.0% |
TGATAATTACCCTTGCATAG+AGG | - | chr3_2:82774050-82774069 | None:intergenic | 35.0% | |
TCCTTCCAAAGAAGAAAAGA+AGG | - | chr3_2:82774149-82774168 | None:intergenic | 35.0% | |
!! | TCTTTTCTTCTTTGGAAGGA+TGG | + | chr3_2:82774149-82774168 | Msa0430940:intron | 35.0% |
ATATATGGATGGTCATACAC+AGG | + | chr3_2:82774427-82774446 | Msa0430940:intron | 35.0% | |
GCTGCAGAAATTTCACATAT+TGG | - | chr3_2:82774484-82774503 | None:intergenic | 35.0% | |
TATGCCCCAATTGCTTATAA+TGG | + | chr3_2:82774665-82774684 | Msa0430940:CDS | 35.0% | |
!! | GCTTATAATGGACTTGACAT+TGG | + | chr3_2:82774677-82774696 | Msa0430940:CDS | 35.0% |
ACATTGGATTCAATCTCAAC+CGG | + | chr3_2:82774693-82774712 | Msa0430940:CDS | 35.0% | |
CTTCAGTTGCAAATATTCTG+CGG | - | chr3_2:82773192-82773211 | None:intergenic | 35.0% | |
GTTTGATCAAGTAATTGTGG+TGG | - | chr3_2:82773229-82773248 | None:intergenic | 35.0% | |
GAGGTTTGATCAAGTAATTG+TGG | - | chr3_2:82773232-82773251 | None:intergenic | 35.0% | |
CTTCTGCTTGGAGAAAATAA+TGG | + | chr3_2:82773253-82773272 | Msa0430940:CDS | 35.0% | |
! | GGAGAAAATAATGGGAACTT+TGG | + | chr3_2:82773262-82773281 | Msa0430940:CDS | 35.0% |
! | TTTTCAGCTTCAACTTAGGT+TGG | - | chr3_2:82773492-82773511 | None:intergenic | 35.0% |
! | AACCTAAGTTGAAGCTGAAA+AGG | + | chr3_2:82773491-82773510 | Msa0430940:CDS | 35.0% |
! | ATCCTTTTCAGCTTCAACTT+AGG | - | chr3_2:82773496-82773515 | None:intergenic | 35.0% |
CATATTACAATCGTCTCTCA+TGG | - | chr3_2:82773725-82773744 | None:intergenic | 35.0% | |
!! | ACTAGCTCTTTTCTTTCCAT+TGG | - | chr3_2:82774001-82774020 | None:intergenic | 35.0% |
TGATAATTACCCTTGCATAG+AGG | - | chr3_2:82774050-82774069 | None:intergenic | 35.0% | |
TCCTTCCAAAGAAGAAAAGA+AGG | - | chr3_2:82774149-82774168 | None:intergenic | 35.0% | |
!! | TCTTTTCTTCTTTGGAAGGA+TGG | + | chr3_2:82774149-82774168 | Msa0430940:intron | 35.0% |
ATATATGGATGGTCATACAC+AGG | + | chr3_2:82774427-82774446 | Msa0430940:intron | 35.0% | |
GCTGCAGAAATTTCACATAT+TGG | - | chr3_2:82774484-82774503 | None:intergenic | 35.0% | |
TATGCCCCAATTGCTTATAA+TGG | + | chr3_2:82774665-82774684 | Msa0430940:CDS | 35.0% | |
!! | GCTTATAATGGACTTGACAT+TGG | + | chr3_2:82774677-82774696 | Msa0430940:CDS | 35.0% |
ACATTGGATTCAATCTCAAC+CGG | + | chr3_2:82774693-82774712 | Msa0430940:CDS | 35.0% | |
TCTACATGCACCTGAAATTC+TGG | - | chr3_2:82773529-82773548 | None:intergenic | 40.0% | |
!!! | CAGCACGAGGTTTTTTCTTA+GGG | - | chr3_2:82773576-82773595 | None:intergenic | 40.0% |
TGCATCTTTGCACCTGAATT+TGG | - | chr3_2:82773798-82773817 | None:intergenic | 40.0% | |
ATCAACCTTCTTGCTCTTCT+TGG | - | chr3_2:82773836-82773855 | None:intergenic | 40.0% | |
ATGTCCATCTACACTTGCAT+TGG | - | chr3_2:82773884-82773903 | None:intergenic | 40.0% | |
AACATGTGTGAGGAAAACAG+TGG | + | chr3_2:82773934-82773953 | Msa0430940:CDS | 40.0% | |
GGAAAGAAAAGAGCTAGTAG+AGG | + | chr3_2:82774003-82774022 | Msa0430940:CDS | 40.0% | |
ACATGCTATGGTTCACAGAA+TGG | - | chr3_2:82774124-82774143 | None:intergenic | 40.0% | |
ATTCTGTGAACCATAGCATG+TGG | + | chr3_2:82774123-82774142 | Msa0430940:intron | 40.0% | |
! | TGTGGCCTTCTTTTCTTCTT+TGG | + | chr3_2:82774141-82774160 | Msa0430940:intron | 40.0% |
! | GCCTTCTTTTCTTCTTTGGA+AGG | + | chr3_2:82774145-82774164 | Msa0430940:intron | 40.0% |
TCTTGTACCAAATGGGACAA+AGG | + | chr3_2:82774328-82774347 | Msa0430940:CDS | 40.0% | |
ATTTCTGCAGCTCCAAATCA+AGG | + | chr3_2:82774493-82774512 | Msa0430940:CDS | 40.0% | |
! | TTCTAAGCTCTGATGATCTG+TGG | + | chr3_2:82774639-82774658 | Msa0430940:CDS | 40.0% |
TCTACATGCACCTGAAATTC+TGG | - | chr3_2:82773529-82773548 | None:intergenic | 40.0% | |
!!! | CAGCACGAGGTTTTTTCTTA+GGG | - | chr3_2:82773576-82773595 | None:intergenic | 40.0% |
TGCATCTTTGCACCTGAATT+TGG | - | chr3_2:82773798-82773817 | None:intergenic | 40.0% | |
ATCAACCTTCTTGCTCTTCT+TGG | - | chr3_2:82773836-82773855 | None:intergenic | 40.0% | |
ATGTCCATCTACACTTGCAT+TGG | - | chr3_2:82773884-82773903 | None:intergenic | 40.0% | |
AACATGTGTGAGGAAAACAG+TGG | + | chr3_2:82773934-82773953 | Msa0430940:CDS | 40.0% | |
GGAAAGAAAAGAGCTAGTAG+AGG | + | chr3_2:82774003-82774022 | Msa0430940:CDS | 40.0% | |
ACATGCTATGGTTCACAGAA+TGG | - | chr3_2:82774124-82774143 | None:intergenic | 40.0% | |
ATTCTGTGAACCATAGCATG+TGG | + | chr3_2:82774123-82774142 | Msa0430940:intron | 40.0% | |
! | TGTGGCCTTCTTTTCTTCTT+TGG | + | chr3_2:82774141-82774160 | Msa0430940:intron | 40.0% |
! | GCCTTCTTTTCTTCTTTGGA+AGG | + | chr3_2:82774145-82774164 | Msa0430940:intron | 40.0% |
TCTTGTACCAAATGGGACAA+AGG | + | chr3_2:82774328-82774347 | Msa0430940:CDS | 40.0% | |
ATTTCTGCAGCTCCAAATCA+AGG | + | chr3_2:82774493-82774512 | Msa0430940:CDS | 40.0% | |
! | TTCTAAGCTCTGATGATCTG+TGG | + | chr3_2:82774639-82774658 | Msa0430940:CDS | 40.0% |
!! | TATCCCTGATGATGGCGAAT+GGG | + | chr3_2:82773159-82773178 | Msa0430940:CDS | 45.0% |
ATTCCCATTCGCCATCATCA+GGG | - | chr3_2:82773165-82773184 | None:intergenic | 45.0% | |
! | ATTGTGGTGGAGAGTCATCA+TGG | - | chr3_2:82773216-82773235 | None:intergenic | 45.0% |
! | ATTTTCTCCAAGCAGAAGCG+AGG | - | chr3_2:82773251-82773270 | None:intergenic | 45.0% |
TTCAGAAGGGGAGCAAAACA+TGG | - | chr3_2:82773296-82773315 | None:intergenic | 45.0% | |
TGTTTCCCTCAGCTTCAGAA+GGG | - | chr3_2:82773309-82773328 | None:intergenic | 45.0% | |
ATGTTTCCCTCAGCTTCAGA+AGG | - | chr3_2:82773310-82773329 | None:intergenic | 45.0% | |
GCTTGATGTGCCAGAATTTC+AGG | + | chr3_2:82773516-82773535 | Msa0430940:CDS | 45.0% | |
!!! | GCAGCACGAGGTTTTTTCTT+AGG | - | chr3_2:82773577-82773596 | None:intergenic | 45.0% |
! | CTTACATCTTTTGCAGCACG+AGG | - | chr3_2:82773589-82773608 | None:intergenic | 45.0% |
AGAGTCCAAGAAGAGCAAGA+AGG | + | chr3_2:82773828-82773847 | Msa0430940:CDS | 45.0% | |
GAAGCCAATGCAAGTGTAGA+TGG | + | chr3_2:82773877-82773896 | Msa0430940:CDS | 45.0% | |
GTAGATGGACATACCTCTAG+TGG | + | chr3_2:82773892-82773911 | Msa0430940:CDS | 45.0% | |
!! | CTCTGAGGTATAACCACTAG+AGG | - | chr3_2:82773908-82773927 | None:intergenic | 45.0% |
CTCTAGTGGTTATACCTCAG+AGG | + | chr3_2:82773906-82773925 | Msa0430940:CDS | 45.0% | |
! | ACACATGTTTTGCTCCTCTG+AGG | - | chr3_2:82773923-82773942 | None:intergenic | 45.0% |
AGAGGAGCAAAACATGTGTG+AGG | + | chr3_2:82773924-82773943 | Msa0430940:CDS | 45.0% | |
ATGTGTGAGGAAAACAGTGG+AGG | + | chr3_2:82773937-82773956 | Msa0430940:CDS | 45.0% | |
ACTGTGTCTCTCAACTCCAA+TGG | + | chr3_2:82773982-82774001 | Msa0430940:CDS | 45.0% | |
ATCCTCAAAGCCTCTATGCA+AGG | + | chr3_2:82774037-82774056 | Msa0430940:CDS | 45.0% | |
TCCTCAAAGCCTCTATGCAA+GGG | + | chr3_2:82774038-82774057 | Msa0430940:CDS | 45.0% | |
GAAAAGAAGGCCACATGCTA+TGG | - | chr3_2:82774136-82774155 | None:intergenic | 45.0% | |
!! | ATGGTGGTGGAGAAATCTTC+CGG | - | chr3_2:82774715-82774734 | None:intergenic | 45.0% |
!! | TATCCCTGATGATGGCGAAT+GGG | + | chr3_2:82773159-82773178 | Msa0430940:CDS | 45.0% |
ATTCCCATTCGCCATCATCA+GGG | - | chr3_2:82773165-82773184 | None:intergenic | 45.0% | |
! | ATTGTGGTGGAGAGTCATCA+TGG | - | chr3_2:82773216-82773235 | None:intergenic | 45.0% |
! | ATTTTCTCCAAGCAGAAGCG+AGG | - | chr3_2:82773251-82773270 | None:intergenic | 45.0% |
TTCAGAAGGGGAGCAAAACA+TGG | - | chr3_2:82773296-82773315 | None:intergenic | 45.0% | |
TGTTTCCCTCAGCTTCAGAA+GGG | - | chr3_2:82773309-82773328 | None:intergenic | 45.0% | |
ATGTTTCCCTCAGCTTCAGA+AGG | - | chr3_2:82773310-82773329 | None:intergenic | 45.0% | |
GCTTGATGTGCCAGAATTTC+AGG | + | chr3_2:82773516-82773535 | Msa0430940:CDS | 45.0% | |
!!! | GCAGCACGAGGTTTTTTCTT+AGG | - | chr3_2:82773577-82773596 | None:intergenic | 45.0% |
! | CTTACATCTTTTGCAGCACG+AGG | - | chr3_2:82773589-82773608 | None:intergenic | 45.0% |
AGAGTCCAAGAAGAGCAAGA+AGG | + | chr3_2:82773828-82773847 | Msa0430940:CDS | 45.0% | |
GAAGCCAATGCAAGTGTAGA+TGG | + | chr3_2:82773877-82773896 | Msa0430940:CDS | 45.0% | |
GTAGATGGACATACCTCTAG+TGG | + | chr3_2:82773892-82773911 | Msa0430940:CDS | 45.0% | |
!! | CTCTGAGGTATAACCACTAG+AGG | - | chr3_2:82773908-82773927 | None:intergenic | 45.0% |
CTCTAGTGGTTATACCTCAG+AGG | + | chr3_2:82773906-82773925 | Msa0430940:CDS | 45.0% | |
! | ACACATGTTTTGCTCCTCTG+AGG | - | chr3_2:82773923-82773942 | None:intergenic | 45.0% |
AGAGGAGCAAAACATGTGTG+AGG | + | chr3_2:82773924-82773943 | Msa0430940:CDS | 45.0% | |
ATGTGTGAGGAAAACAGTGG+AGG | + | chr3_2:82773937-82773956 | Msa0430940:CDS | 45.0% | |
ACTGTGTCTCTCAACTCCAA+TGG | + | chr3_2:82773982-82774001 | Msa0430940:CDS | 45.0% | |
ATCCTCAAAGCCTCTATGCA+AGG | + | chr3_2:82774037-82774056 | Msa0430940:CDS | 45.0% | |
TCCTCAAAGCCTCTATGCAA+GGG | + | chr3_2:82774038-82774057 | Msa0430940:CDS | 45.0% | |
GAAAAGAAGGCCACATGCTA+TGG | - | chr3_2:82774136-82774155 | None:intergenic | 45.0% | |
!! | ATGGTGGTGGAGAAATCTTC+CGG | - | chr3_2:82774715-82774734 | None:intergenic | 45.0% |
CTTGGAGCTATCCCTGATGA+TGG | + | chr3_2:82773151-82773170 | Msa0430940:CDS | 50.0% | |
!! | CTATCCCTGATGATGGCGAA+TGG | + | chr3_2:82773158-82773177 | Msa0430940:CDS | 50.0% |
CATTCCCATTCGCCATCATC+AGG | - | chr3_2:82773166-82773185 | None:intergenic | 50.0% | |
GATCAAACCTCGCTTCTGCT+TGG | + | chr3_2:82773241-82773260 | Msa0430940:CDS | 50.0% | |
GTTTCCCTCAGCTTCAGAAG+GGG | - | chr3_2:82773308-82773327 | None:intergenic | 50.0% | |
ACCCTTGCATAGAGGCTTTG+AGG | - | chr3_2:82774042-82774061 | None:intergenic | 50.0% | |
AATCTCGCCATGCCATCAAG+GGG | - | chr3_2:82774184-82774203 | None:intergenic | 50.0% | |
GAATCTCGCCATGCCATCAA+GGG | - | chr3_2:82774185-82774204 | None:intergenic | 50.0% | |
CTTGGAGCTATCCCTGATGA+TGG | + | chr3_2:82773151-82773170 | Msa0430940:CDS | 50.0% | |
!! | CTATCCCTGATGATGGCGAA+TGG | + | chr3_2:82773158-82773177 | Msa0430940:CDS | 50.0% |
CATTCCCATTCGCCATCATC+AGG | - | chr3_2:82773166-82773185 | None:intergenic | 50.0% | |
GATCAAACCTCGCTTCTGCT+TGG | + | chr3_2:82773241-82773260 | Msa0430940:CDS | 50.0% | |
GTTTCCCTCAGCTTCAGAAG+GGG | - | chr3_2:82773308-82773327 | None:intergenic | 50.0% | |
ACCCTTGCATAGAGGCTTTG+AGG | - | chr3_2:82774042-82774061 | None:intergenic | 50.0% | |
AATCTCGCCATGCCATCAAG+GGG | - | chr3_2:82774184-82774203 | None:intergenic | 50.0% | |
GAATCTCGCCATGCCATCAA+GGG | - | chr3_2:82774185-82774204 | None:intergenic | 50.0% | |
!! | TTGCTCCCCTTCTGAAGCTG+AGG | + | chr3_2:82773300-82773319 | Msa0430940:CDS | 55.0% |
!! | TGCTCCCCTTCTGAAGCTGA+GGG | + | chr3_2:82773301-82773320 | Msa0430940:CDS | 55.0% |
TGGTCACACTAGCCCCTTGA+TGG | + | chr3_2:82774169-82774188 | Msa0430940:intron | 55.0% | |
! | ACACTAGCCCCTTGATGGCA+TGG | + | chr3_2:82774174-82774193 | Msa0430940:intron | 55.0% |
CGAATCTCGCCATGCCATCA+AGG | - | chr3_2:82774186-82774205 | None:intergenic | 55.0% | |
!! | TTGCTCCCCTTCTGAAGCTG+AGG | + | chr3_2:82773300-82773319 | Msa0430940:CDS | 55.0% |
!! | TGCTCCCCTTCTGAAGCTGA+GGG | + | chr3_2:82773301-82773320 | Msa0430940:CDS | 55.0% |
TGGTCACACTAGCCCCTTGA+TGG | + | chr3_2:82774169-82774188 | Msa0430940:intron | 55.0% | |
! | ACACTAGCCCCTTGATGGCA+TGG | + | chr3_2:82774174-82774193 | Msa0430940:intron | 55.0% |
CGAATCTCGCCATGCCATCA+AGG | - | chr3_2:82774186-82774205 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_2 | gene | 82773142 | 82774736 | 82773142 | ID=Msa0430940;Name=Msa0430940 |
chr3_2 | mRNA | 82773142 | 82774736 | 82773142 | ID=Msa0430940-mRNA-1;Parent=Msa0430940;Name=Msa0430940-mRNA-1;_AED=0.12;_eAED=0.13;_QI=0|0|0|1|1|1|5|0|315 |
chr3_2 | exon | 82773142 | 82773603 | 82773142 | ID=Msa0430940-mRNA-1:exon:23008;Parent=Msa0430940-mRNA-1 |
chr3_2 | exon | 82773805 | 82774059 | 82773805 | ID=Msa0430940-mRNA-1:exon:23009;Parent=Msa0430940-mRNA-1 |
chr3_2 | exon | 82774284 | 82774349 | 82774284 | ID=Msa0430940-mRNA-1:exon:23010;Parent=Msa0430940-mRNA-1 |
chr3_2 | exon | 82774449 | 82774514 | 82774449 | ID=Msa0430940-mRNA-1:exon:23011;Parent=Msa0430940-mRNA-1 |
chr3_2 | exon | 82774638 | 82774736 | 82774638 | ID=Msa0430940-mRNA-1:exon:23012;Parent=Msa0430940-mRNA-1 |
chr3_2 | CDS | 82773142 | 82773603 | 82773142 | ID=Msa0430940-mRNA-1:cds;Parent=Msa0430940-mRNA-1 |
chr3_2 | CDS | 82773805 | 82774059 | 82773805 | ID=Msa0430940-mRNA-1:cds;Parent=Msa0430940-mRNA-1 |
chr3_2 | CDS | 82774284 | 82774349 | 82774284 | ID=Msa0430940-mRNA-1:cds;Parent=Msa0430940-mRNA-1 |
chr3_2 | CDS | 82774449 | 82774514 | 82774449 | ID=Msa0430940-mRNA-1:cds;Parent=Msa0430940-mRNA-1 |
chr3_2 | CDS | 82774638 | 82774736 | 82774638 | ID=Msa0430940-mRNA-1:cds;Parent=Msa0430940-mRNA-1 |
Gene Sequence |
Protein sequence |