Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0431050 | RHN70377.1 | 80.479 | 543 | 35 | 4 | 1 | 543 | 1 | 472 | 0.0 | 766 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0431050 | sp|F4IXE7|IDM1_ARATH | 30.966 | 507 | 279 | 16 | 50 | 535 | 567 | 1023 | 9.69e-58 | 211 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0431050 | A0A396J566 | 80.479 | 543 | 35 | 4 | 1 | 543 | 1 | 472 | 0.0 | 766 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0431050 | TR | PHD |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0431050 | MtrunA17_Chr3g0134851 | 80.479 | 543 | 35 | 4 | 1 | 543 | 1 | 472 | 0.0 | 766 |
| Msa0431050 | MtrunA17_Chr7g0270101 | 51.322 | 643 | 176 | 12 | 4 | 536 | 173 | 788 | 0.0 | 560 |
| Msa0431050 | MtrunA17_Chr3g0134821 | 57.496 | 567 | 184 | 10 | 4 | 537 | 292 | 834 | 0.0 | 548 |
| Msa0431050 | MtrunA17_Chr3g0134811 | 48.974 | 682 | 182 | 12 | 3 | 537 | 131 | 793 | 0.0 | 542 |
| Msa0431050 | MtrunA17_Chr5g0407211 | 57.175 | 439 | 156 | 9 | 108 | 535 | 2 | 419 | 1.58e-164 | 474 |
| Msa0431050 | MtrunA17_Chr5g0407251 | 56.492 | 439 | 159 | 9 | 108 | 535 | 2 | 419 | 8.35e-162 | 467 |
| Msa0431050 | MtrunA17_Chr5g0430361 | 36.481 | 540 | 272 | 15 | 16 | 537 | 573 | 1059 | 4.94e-92 | 304 |
| Msa0431050 | MtrunA17_Chr3g0105291 | 36.832 | 505 | 269 | 12 | 45 | 535 | 540 | 1008 | 1.27e-86 | 290 |
| Msa0431050 | MtrunA17_Chr2g0316251 | 34.234 | 444 | 244 | 10 | 105 | 535 | 758 | 1166 | 3.47e-68 | 239 |
| Msa0431050 | MtrunA17_Chr1g0205451 | 33.976 | 415 | 234 | 7 | 105 | 509 | 602 | 986 | 2.70e-61 | 219 |
| Msa0431050 | MtrunA17_Chr1g0185491 | 32.360 | 445 | 269 | 12 | 105 | 542 | 808 | 1227 | 4.66e-61 | 218 |
| Msa0431050 | MtrunA17_Chr1g0182481 | 26.667 | 435 | 218 | 14 | 143 | 523 | 496 | 883 | 2.03e-39 | 153 |
| Msa0431050 | MtrunA17_Chr7g0259981 | 30.100 | 299 | 169 | 8 | 222 | 516 | 13 | 275 | 2.99e-34 | 131 |
| Msa0431050 | MtrunA17_Chr1g0179841 | 25.495 | 455 | 229 | 15 | 143 | 530 | 386 | 797 | 8.03e-32 | 130 |
| Msa0431050 | MtrunA17_Chr7g0265211 | 25.373 | 469 | 230 | 17 | 135 | 533 | 527 | 945 | 2.76e-30 | 126 |
| Msa0431050 | MtrunA17_Chr4g0028111 | 23.515 | 421 | 207 | 11 | 156 | 508 | 187 | 560 | 4.91e-21 | 97.1 |
| Msa0431050 | MtrunA17_Chr4g0055731 | 24.500 | 400 | 221 | 13 | 137 | 529 | 138 | 463 | 6.00e-21 | 95.9 |
| Msa0431050 | MtrunA17_Chr4g0027811 | 23.276 | 464 | 223 | 14 | 107 | 520 | 182 | 562 | 8.44e-21 | 96.3 |
| Msa0431050 | MtrunA17_Chr4g0025251 | 26.482 | 253 | 140 | 8 | 294 | 519 | 453 | 686 | 7.15e-19 | 90.5 |
| Msa0431050 | MtrunA17_Chr2g0320451 | 25.000 | 192 | 135 | 4 | 347 | 535 | 838 | 1023 | 3.41e-15 | 79.0 |
| Msa0431050 | MtrunA17_Chr2g0320451 | 30.093 | 216 | 107 | 7 | 61 | 268 | 421 | 600 | 1.59e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0431050 | AT5G58610.4 | 35.729 | 501 | 266 | 11 | 66 | 541 | 314 | 783 | 1.03e-83 | 278 |
| Msa0431050 | AT5G58610.8 | 35.729 | 501 | 266 | 11 | 66 | 541 | 545 | 1014 | 1.89e-82 | 277 |
| Msa0431050 | AT5G58610.2 | 35.729 | 501 | 266 | 11 | 66 | 541 | 545 | 1014 | 1.89e-82 | 277 |
| Msa0431050 | AT5G58610.3 | 35.729 | 501 | 266 | 11 | 66 | 541 | 545 | 1014 | 2.63e-82 | 278 |
| Msa0431050 | AT5G58610.7 | 35.729 | 501 | 266 | 11 | 66 | 541 | 536 | 1005 | 3.41e-82 | 278 |
| Msa0431050 | AT5G58610.5 | 35.729 | 501 | 266 | 11 | 66 | 541 | 536 | 1005 | 3.59e-82 | 277 |
| Msa0431050 | AT5G58610.1 | 34.608 | 497 | 251 | 12 | 66 | 541 | 536 | 979 | 5.86e-75 | 257 |
| Msa0431050 | AT5G58610.6 | 34.608 | 497 | 251 | 12 | 66 | 541 | 536 | 979 | 8.79e-75 | 256 |
| Msa0431050 | AT5G58610.10 | 34.932 | 438 | 229 | 11 | 66 | 478 | 545 | 951 | 2.04e-66 | 232 |
| Msa0431050 | AT5G58610.9 | 34.932 | 438 | 229 | 11 | 66 | 478 | 536 | 942 | 2.40e-66 | 232 |
| Msa0431050 | AT5G36740.5 | 30.853 | 551 | 331 | 13 | 8 | 541 | 438 | 955 | 1.32e-65 | 231 |
| Msa0431050 | AT5G36740.1 | 30.853 | 551 | 331 | 13 | 8 | 541 | 438 | 955 | 1.32e-65 | 231 |
| Msa0431050 | AT5G36740.4 | 30.411 | 559 | 333 | 14 | 8 | 541 | 285 | 812 | 1.45e-62 | 222 |
| Msa0431050 | AT3G14980.6 | 30.966 | 507 | 279 | 16 | 50 | 535 | 567 | 1023 | 9.85e-59 | 211 |
| Msa0431050 | AT3G14980.1 | 30.966 | 507 | 279 | 16 | 50 | 535 | 567 | 1023 | 9.85e-59 | 211 |
| Msa0431050 | AT3G14980.2 | 30.966 | 507 | 279 | 16 | 50 | 535 | 567 | 1023 | 9.85e-59 | 211 |
| Msa0431050 | AT3G14980.5 | 31.041 | 509 | 276 | 17 | 50 | 535 | 522 | 978 | 1.02e-58 | 211 |
| Msa0431050 | AT1G05380.3 | 32.273 | 440 | 265 | 9 | 105 | 538 | 516 | 928 | 1.02e-58 | 211 |
| Msa0431050 | AT1G05380.1 | 32.273 | 440 | 265 | 9 | 105 | 538 | 516 | 928 | 1.02e-58 | 211 |
| Msa0431050 | AT1G05380.2 | 32.273 | 440 | 265 | 9 | 105 | 538 | 516 | 928 | 1.02e-58 | 211 |
| Msa0431050 | AT3G14980.3 | 30.966 | 507 | 279 | 16 | 50 | 535 | 567 | 1023 | 1.30e-58 | 211 |
| Msa0431050 | AT5G36670.4 | 28.998 | 569 | 336 | 15 | 6 | 541 | 436 | 969 | 1.17e-57 | 208 |
| Msa0431050 | AT5G36670.5 | 28.998 | 569 | 336 | 15 | 6 | 541 | 436 | 969 | 1.17e-57 | 208 |
| Msa0431050 | AT5G36670.2 | 31.084 | 489 | 287 | 13 | 6 | 477 | 436 | 891 | 1.01e-56 | 204 |
| Msa0431050 | AT5G36740.2 | 31.084 | 489 | 287 | 13 | 6 | 477 | 436 | 891 | 1.01e-56 | 204 |
| Msa0431050 | AT5G36740.3 | 31.084 | 489 | 287 | 13 | 6 | 477 | 436 | 891 | 1.01e-56 | 204 |
| Msa0431050 | AT5G36670.3 | 28.596 | 577 | 338 | 16 | 6 | 541 | 283 | 826 | 1.03e-54 | 199 |
| Msa0431050 | AT5G36670.1 | 28.596 | 577 | 338 | 16 | 6 | 541 | 436 | 979 | 3.31e-54 | 198 |
| Msa0431050 | AT5G58610.11 | 33.827 | 405 | 212 | 11 | 66 | 445 | 536 | 909 | 4.84e-54 | 197 |
| Msa0431050 | AT5G63900.1 | 36.562 | 320 | 169 | 9 | 222 | 538 | 255 | 543 | 5.19e-54 | 192 |
| Msa0431050 | AT4G14920.2 | 28.545 | 536 | 304 | 17 | 14 | 535 | 513 | 983 | 5.57e-54 | 197 |
| Msa0431050 | AT4G14920.1 | 28.545 | 536 | 304 | 17 | 14 | 535 | 513 | 983 | 5.57e-54 | 197 |
| Msa0431050 | AT4G14920.3 | 28.545 | 536 | 304 | 17 | 14 | 535 | 513 | 983 | 6.54e-54 | 197 |
| Msa0431050 | AT2G37520.1 | 27.483 | 433 | 227 | 14 | 143 | 524 | 410 | 806 | 4.02e-38 | 150 |
| Msa0431050 | AT3G53680.1 | 27.842 | 431 | 227 | 14 | 143 | 524 | 427 | 822 | 9.59e-38 | 149 |
| Msa0431050 | AT3G53680.2 | 27.842 | 431 | 227 | 14 | 143 | 524 | 429 | 824 | 1.01e-37 | 149 |
| Msa0431050 | AT3G14980.4 | 29.904 | 418 | 222 | 16 | 50 | 446 | 567 | 934 | 2.67e-37 | 147 |
| Msa0431050 | AT2G36720.1 | 24.138 | 464 | 244 | 11 | 143 | 540 | 557 | 978 | 4.21e-35 | 141 |
| Msa0431050 | AT2G36720.2 | 24.138 | 464 | 244 | 11 | 143 | 540 | 557 | 978 | 4.21e-35 | 141 |
| Msa0431050 | AT2G27980.1 | 25.957 | 470 | 236 | 13 | 143 | 542 | 637 | 1064 | 6.38e-31 | 128 |
Find 99 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATACTTTCTTTGAATTTC+AGG | 0.141944 | 3_2:+82967576 | Msa0431050:CDS |
| ACATGTTCTGTTTGTTGTTT+TGG | 0.157762 | 3_2:+82966692 | Msa0431050:CDS |
| AGATCATTCCCAAGCTTATT+TGG | 0.196412 | 3_2:-82967064 | None:intergenic |
| GTGGCAACCATAAGGATTTA+TGG | 0.239122 | 3_2:+82967340 | Msa0431050:CDS |
| TGGTTTCTATACTGCGATTA+TGG | 0.240807 | 3_2:+82967294 | Msa0431050:CDS |
| TGCAAATTCTTGTTTGCGTT+TGG | 0.242204 | 3_2:-82966846 | None:intergenic |
| ACCATCCAAAAGTATCTTCT+TGG | 0.296021 | 3_2:+82966523 | Msa0431050:CDS |
| GTTGATAAAGGATGGAGTTT+TGG | 0.297915 | 3_2:+82966355 | Msa0431050:CDS |
| GTCTTCCAAGAAGATACTTT+TGG | 0.305890 | 3_2:-82966528 | None:intergenic |
| ACAAGCATGAGCCTCAAATT+TGG | 0.327395 | 3_2:-82966486 | None:intergenic |
| TCGTTCCACTCTGATTGTTT+AGG | 0.327474 | 3_2:+82966749 | Msa0431050:CDS |
| CTAAAGAGGGAAGGTATAAG+AGG | 0.337184 | 3_2:+82966320 | Msa0431050:CDS |
| ACAAGAGATACTCCCTCTTT+TGG | 0.339052 | 3_2:-82966420 | None:intergenic |
| CGGAACTTCATTGTTGGACT+TGG | 0.361651 | 3_2:+82966550 | Msa0431050:CDS |
| GTTTCTAAAGCCTCTAGTTC+CGG | 0.368804 | 3_2:+82966173 | Msa0431050:CDS |
| GCAAATTCTTGTTTGCGTTT+GGG | 0.380503 | 3_2:-82966845 | None:intergenic |
| CAGACCATCCGGATCTCGTT+TGG | 0.386226 | 3_2:-82966774 | None:intergenic |
| CCAAGTGTCTATAGCATCCT+TGG | 0.387385 | 3_2:-82967497 | None:intergenic |
| GGAACGGATAAATCAACTTC+TGG | 0.396861 | 3_2:+82966146 | Msa0431050:CDS |
| ACATGTTCCCACAAACTTCA+TGG | 0.397494 | 3_2:-82967012 | None:intergenic |
| ATTCACTCTCACCAAATTTG+AGG | 0.418669 | 3_2:+82966475 | Msa0431050:CDS |
| TGTGTAAAGGCAACAAGAAT+TGG | 0.422575 | 3_2:+82966929 | Msa0431050:CDS |
| CATAAGGATTTATGGTCAAA+AGG | 0.428606 | 3_2:+82967348 | Msa0431050:CDS |
| CAAACGAGATCCGGATGGTC+TGG | 0.433972 | 3_2:+82966775 | Msa0431050:CDS |
| AGTTGATTAACTTAGGAGTT+GGG | 0.439665 | 3_2:+82967455 | Msa0431050:CDS |
| GAGACACTTTCTTTGTTAAG+TGG | 0.443344 | 3_2:-82967619 | None:intergenic |
| AGACCATCCGGATCTCGTTT+GGG | 0.445042 | 3_2:-82966773 | None:intergenic |
| AAGAAACGTTTGAACTTTCG+TGG | 0.445092 | 3_2:+82967274 | Msa0431050:CDS |
| TTGTAATGCTGAAGCAAAAT+CGG | 0.448060 | 3_2:+82966619 | Msa0431050:CDS |
| TTTAGGTCCCAAACGAGATC+CGG | 0.450042 | 3_2:+82966766 | Msa0431050:CDS |
| ATGTGACTAGAAACTTCATT+TGG | 0.453838 | 3_2:-82966956 | None:intergenic |
| GGAAGACGGAACTTCATTGT+TGG | 0.455884 | 3_2:+82966544 | Msa0431050:CDS |
| TCTGAGCTCAGCCAATCAAA+AGG | 0.457877 | 3_2:+82966589 | Msa0431050:CDS |
| ATTGACAATGTTACCAAAAG+AGG | 0.459673 | 3_2:+82966407 | Msa0431050:CDS |
| GAAGTGTTCTCAGTTGATAA+AGG | 0.461389 | 3_2:+82966343 | Msa0431050:CDS |
| CGTAAATTGACTGTGGCTCT+TGG | 0.463118 | 3_2:+82967163 | Msa0431050:CDS |
| GAGGAACAGTTGATTAACTT+AGG | 0.464976 | 3_2:+82967448 | Msa0431050:CDS |
| GGTGTGCTGCGTGAGAGTTT+TGG | 0.469338 | 3_2:+82967184 | Msa0431050:CDS |
| TGTTGTTGTTGTTCCTTCCT+CGG | 0.473116 | 3_2:-82966066 | None:intergenic |
| CTGAGCTCAGCCAATCAAAA+GGG | 0.474959 | 3_2:+82966590 | Msa0431050:CDS |
| CTAGGAATACCAAATAAGCT+TGG | 0.478097 | 3_2:+82967055 | Msa0431050:CDS |
| TATACTGCGATTATGGAGAA+AGG | 0.478537 | 3_2:+82967301 | Msa0431050:CDS |
| CCGTTCCCTCAGATTCTCTC+AGG | 0.480436 | 3_2:-82966130 | None:intergenic |
| TAGGAATACCAAATAAGCTT+GGG | 0.480908 | 3_2:+82967056 | Msa0431050:CDS |
| ATACTGCGATTATGGAGAAA+GGG | 0.484197 | 3_2:+82967302 | Msa0431050:CDS |
| ATTTCACTTGGGGTGTGTAA+AGG | 0.484386 | 3_2:+82966916 | Msa0431050:CDS |
| CAGTTGATTAACTTAGGAGT+TGG | 0.492298 | 3_2:+82967454 | Msa0431050:CDS |
| TATAATGTGAGTTGTGATGA+TGG | 0.496882 | 3_2:+82967106 | Msa0431050:CDS |
| AGCTCAGAGCTTTCATTCGA+CGG | 0.500191 | 3_2:-82966574 | None:intergenic |
| TAACTTAGGAGTTGGGAGCT+TGG | 0.501005 | 3_2:+82967462 | Msa0431050:CDS |
| AGCTTGGGAATGATCTAACT+TGG | 0.501787 | 3_2:+82967071 | Msa0431050:CDS |
| GGATAAATCAACTTCTGGTA+AGG | 0.504650 | 3_2:+82966151 | Msa0431050:CDS |
| AAAGAGGGAAAGTACTAAAG+AGG | 0.506275 | 3_2:+82966306 | Msa0431050:CDS |
| TGAGTTCTGTGGCAACCATA+AGG | 0.512428 | 3_2:+82967332 | Msa0431050:CDS |
| CGGATGGTCTGGATGGTACA+TGG | 0.516273 | 3_2:+82966786 | Msa0431050:CDS |
| AAGAGGGAAAGTACTAAAGA+GGG | 0.517147 | 3_2:+82966307 | Msa0431050:CDS |
| AATGTGCCGTTTGTTGATGA+AGG | 0.520351 | 3_2:+82967420 | Msa0431050:CDS |
| GTTTCTAATTCAGTGGGTAG+TGG | 0.524886 | 3_2:+82966281 | Msa0431050:CDS |
| CCAAGGATGCTATAGACACT+TGG | 0.526403 | 3_2:+82967497 | Msa0431050:CDS |
| TAAAGAGGGAAGGTATAAGA+GGG | 0.542556 | 3_2:+82966321 | Msa0431050:CDS |
| CATGTACCATCCAGACCATC+CGG | 0.542947 | 3_2:-82966785 | None:intergenic |
| CAATCAGAGTGGAACGAAGA+AGG | 0.546313 | 3_2:-82966743 | None:intergenic |
| ATCAGAAGTTTCTAATTCAG+TGG | 0.547714 | 3_2:+82966274 | Msa0431050:CDS |
| TCAGTGGGTAGTGGTAAAAG+AGG | 0.549198 | 3_2:+82966290 | Msa0431050:CDS |
| ATGTGAACGAAAATTTCACT+TGG | 0.549257 | 3_2:+82966904 | Msa0431050:CDS |
| TGTTCTCAGTTGATAAAGGA+TGG | 0.550925 | 3_2:+82966347 | Msa0431050:CDS |
| CGAGATCCGGATGGTCTGGA+TGG | 0.554408 | 3_2:+82966779 | Msa0431050:CDS |
| CAGTGGGTAGTGGTAAAAGA+GGG | 0.562756 | 3_2:+82966291 | Msa0431050:CDS |
| CAAGCCCCTTCATCAACAAA+CGG | 0.563396 | 3_2:-82967426 | None:intergenic |
| AAAAGTATCTTCTTGGAAGA+CGG | 0.564085 | 3_2:+82966530 | Msa0431050:CDS |
| TGTGAACGAAAATTTCACTT+GGG | 0.566723 | 3_2:+82966905 | Msa0431050:CDS |
| AGATCGCCTGAGAGAATCTG+AGG | 0.577144 | 3_2:+82966124 | Msa0431050:CDS |
| TCAGAAGTTTCTAATTCAGT+GGG | 0.578275 | 3_2:+82966275 | Msa0431050:CDS |
| CCTGAGAGAATCTGAGGGAA+CGG | 0.579608 | 3_2:+82966130 | Msa0431050:CDS |
| CTGATGAGGAGTTTCATCAA+AGG | 0.590006 | 3_2:+82967137 | Msa0431050:CDS |
| GGTATCAAGATCAACTTCAA+AGG | 0.591691 | 3_2:+82966223 | Msa0431050:CDS |
| ATGTGCCGTTTGTTGATGAA+GGG | 0.591926 | 3_2:+82967421 | Msa0431050:CDS |
| TTTAACAGAACCGGAACTAG+AGG | 0.594122 | 3_2:-82966183 | None:intergenic |
| CGACAGAGAGAATCCGAGGA+AGG | 0.596626 | 3_2:+82966053 | Msa0431050:CDS |
| TTATGTCTAGAGAAACTACT+AGG | 0.598338 | 3_2:+82967037 | Msa0431050:CDS |
| AAAGCGACAGAGAGAATCCG+AGG | 0.599141 | 3_2:+82966049 | Msa0431050:CDS |
| GGGAAAGTACTAAAGAGGGA+AGG | 0.603607 | 3_2:+82966311 | Msa0431050:CDS |
| TACTGCGATTATGGAGAAAG+GGG | 0.609394 | 3_2:+82967303 | Msa0431050:CDS |
| CATATTCTACAACAGCAACT+CGG | 0.614325 | 3_2:-82966815 | None:intergenic |
| TGTGCCGTTTGTTGATGAAG+GGG | 0.619488 | 3_2:+82967422 | Msa0431050:CDS |
| TTGACAATGTTACCAAAAGA+GGG | 0.620789 | 3_2:+82966408 | Msa0431050:CDS |
| AGTGTCTATAGCATCCTTGG+AGG | 0.622116 | 3_2:-82967494 | None:intergenic |
| TTTGTTGATGAAGGGGCTTG+AGG | 0.622358 | 3_2:+82967429 | Msa0431050:CDS |
| GTGAACGAAAATTTCACTTG+GGG | 0.624887 | 3_2:+82966906 | Msa0431050:CDS |
| AAATGAAGTTTCTAGTCACA+TGG | 0.625461 | 3_2:+82966958 | Msa0431050:CDS |
| AGAGGGAGTATCTCTTGTGA+AGG | 0.627844 | 3_2:+82966425 | Msa0431050:CDS |
| TGAGCTCAGCCAATCAAAAG+GGG | 0.629047 | 3_2:+82966591 | Msa0431050:CDS |
| GGTGACTTAATATTATGTGA+TGG | 0.647953 | 3_2:+82966716 | Msa0431050:CDS |
| GATCGCCTGAGAGAATCTGA+GGG | 0.652065 | 3_2:+82966125 | Msa0431050:CDS |
| GGTCCCAAACGAGATCCGGA+TGG | 0.671675 | 3_2:+82966770 | Msa0431050:CDS |
| TGGTAACATTGTCAATACCA+CGG | 0.676702 | 3_2:-82966400 | None:intergenic |
| ACTGCGATTATGGAGAAAGG+GGG | 0.694924 | 3_2:+82967304 | Msa0431050:CDS |
| AAGGAAGCGTAAATTGACTG+TGG | 0.704717 | 3_2:+82967156 | Msa0431050:CDS |
| TGGGACCTAAACAATCAGAG+TGG | 0.741486 | 3_2:-82966754 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATTATTGAAAAAAATAAT+TGG | + | chr3_2:82966984-82967003 | Msa0431050:CDS | 10.0% |
| !! | ACATTATTGAAAAAAATAAT+TGG | + | chr3_2:82966984-82967003 | Msa0431050:CDS | 10.0% |
| !!! | ATCAAATCTTTTTTAGATAA+AGG | - | chr3_2:82967223-82967242 | None:intergenic | 15.0% |
| !!! | ATCAAATCTTTTTTAGATAA+AGG | - | chr3_2:82967223-82967242 | None:intergenic | 15.0% |
| !!! | TTGTCTTCGATATTTTTTTT+TGG | - | chr3_2:82967398-82967417 | None:intergenic | 20.0% |
| !! | AAAAAAAAATATCGAAGACA+AGG | + | chr3_2:82967397-82967416 | Msa0431050:CDS | 20.0% |
| !! | TTATACTTTCTTTGAATTTC+AGG | + | chr3_2:82967576-82967595 | Msa0431050:CDS | 20.0% |
| !!! | TTGTCTTCGATATTTTTTTT+TGG | - | chr3_2:82967398-82967417 | None:intergenic | 20.0% |
| !! | AAAAAAAAATATCGAAGACA+AGG | + | chr3_2:82967397-82967416 | Msa0431050:CDS | 20.0% |
| !! | TTATACTTTCTTTGAATTTC+AGG | + | chr3_2:82967576-82967595 | Msa0431050:CDS | 20.0% |
| ! | TAAAAAAGCTACACTAACAA+CGG | + | chr3_2:82966202-82966221 | Msa0431050:CDS | 25.0% |
| !!! | TCTTCGATATTTTTTTTTGG+TGG | - | chr3_2:82967395-82967414 | None:intergenic | 25.0% |
| ! | TAAAAAAGCTACACTAACAA+CGG | + | chr3_2:82966202-82966221 | Msa0431050:CDS | 25.0% |
| !!! | TCTTCGATATTTTTTTTTGG+TGG | - | chr3_2:82967395-82967414 | None:intergenic | 25.0% |
| !!! | TGTAGCTTTTTTAACAGAAC+CGG | - | chr3_2:82966195-82966214 | None:intergenic | 30.0% |
| ATCAGAAGTTTCTAATTCAG+TGG | + | chr3_2:82966274-82966293 | Msa0431050:CDS | 30.0% | |
| TCAGAAGTTTCTAATTCAGT+GGG | + | chr3_2:82966275-82966294 | Msa0431050:CDS | 30.0% | |
| ATTGACAATGTTACCAAAAG+AGG | + | chr3_2:82966407-82966426 | Msa0431050:CDS | 30.0% | |
| TTGACAATGTTACCAAAAGA+GGG | + | chr3_2:82966408-82966427 | Msa0431050:CDS | 30.0% | |
| !! | AAAAGTATCTTCTTGGAAGA+CGG | + | chr3_2:82966530-82966549 | Msa0431050:CDS | 30.0% |
| TTGTAATGCTGAAGCAAAAT+CGG | + | chr3_2:82966619-82966638 | Msa0431050:CDS | 30.0% | |
| !!! | ACATGTTCTGTTTGTTGTTT+TGG | + | chr3_2:82966692-82966711 | Msa0431050:CDS | 30.0% |
| !!! | CATGTTCTGTTTGTTGTTTT+GGG | + | chr3_2:82966693-82966712 | Msa0431050:CDS | 30.0% |
| !!! | ATGTTCTGTTTGTTGTTTTG+GGG | + | chr3_2:82966694-82966713 | Msa0431050:CDS | 30.0% |
| GGTGACTTAATATTATGTGA+TGG | + | chr3_2:82966716-82966735 | Msa0431050:CDS | 30.0% | |
| ATGTGAACGAAAATTTCACT+TGG | + | chr3_2:82966904-82966923 | Msa0431050:CDS | 30.0% | |
| TGTGAACGAAAATTTCACTT+GGG | + | chr3_2:82966905-82966924 | Msa0431050:CDS | 30.0% | |
| ATGTGACTAGAAACTTCATT+TGG | - | chr3_2:82966959-82966978 | None:intergenic | 30.0% | |
| !! | AAATGAAGTTTCTAGTCACA+TGG | + | chr3_2:82966958-82966977 | Msa0431050:CDS | 30.0% |
| TTATGTCTAGAGAAACTACT+AGG | + | chr3_2:82967037-82967056 | Msa0431050:CDS | 30.0% | |
| TAGGAATACCAAATAAGCTT+GGG | + | chr3_2:82967056-82967075 | Msa0431050:CDS | 30.0% | |
| TATAATGTGAGTTGTGATGA+TGG | + | chr3_2:82967106-82967125 | Msa0431050:CDS | 30.0% | |
| ! | CTTTTGACCATAAATCCTTA+TGG | - | chr3_2:82967350-82967369 | None:intergenic | 30.0% |
| CATAAGGATTTATGGTCAAA+AGG | + | chr3_2:82967348-82967367 | Msa0431050:CDS | 30.0% | |
| AGTTGATTAACTTAGGAGTT+GGG | + | chr3_2:82967455-82967474 | Msa0431050:CDS | 30.0% | |
| !!! | TGTAGCTTTTTTAACAGAAC+CGG | - | chr3_2:82966195-82966214 | None:intergenic | 30.0% |
| ATCAGAAGTTTCTAATTCAG+TGG | + | chr3_2:82966274-82966293 | Msa0431050:CDS | 30.0% | |
| TCAGAAGTTTCTAATTCAGT+GGG | + | chr3_2:82966275-82966294 | Msa0431050:CDS | 30.0% | |
| ATTGACAATGTTACCAAAAG+AGG | + | chr3_2:82966407-82966426 | Msa0431050:CDS | 30.0% | |
| TTGACAATGTTACCAAAAGA+GGG | + | chr3_2:82966408-82966427 | Msa0431050:CDS | 30.0% | |
| !! | AAAAGTATCTTCTTGGAAGA+CGG | + | chr3_2:82966530-82966549 | Msa0431050:CDS | 30.0% |
| TTGTAATGCTGAAGCAAAAT+CGG | + | chr3_2:82966619-82966638 | Msa0431050:CDS | 30.0% | |
| !!! | ACATGTTCTGTTTGTTGTTT+TGG | + | chr3_2:82966692-82966711 | Msa0431050:CDS | 30.0% |
| !!! | CATGTTCTGTTTGTTGTTTT+GGG | + | chr3_2:82966693-82966712 | Msa0431050:CDS | 30.0% |
| !!! | ATGTTCTGTTTGTTGTTTTG+GGG | + | chr3_2:82966694-82966713 | Msa0431050:CDS | 30.0% |
| GGTGACTTAATATTATGTGA+TGG | + | chr3_2:82966716-82966735 | Msa0431050:CDS | 30.0% | |
| ATGTGAACGAAAATTTCACT+TGG | + | chr3_2:82966904-82966923 | Msa0431050:CDS | 30.0% | |
| TGTGAACGAAAATTTCACTT+GGG | + | chr3_2:82966905-82966924 | Msa0431050:CDS | 30.0% | |
| ATGTGACTAGAAACTTCATT+TGG | - | chr3_2:82966959-82966978 | None:intergenic | 30.0% | |
| !! | AAATGAAGTTTCTAGTCACA+TGG | + | chr3_2:82966958-82966977 | Msa0431050:CDS | 30.0% |
| TTATGTCTAGAGAAACTACT+AGG | + | chr3_2:82967037-82967056 | Msa0431050:CDS | 30.0% | |
| TAGGAATACCAAATAAGCTT+GGG | + | chr3_2:82967056-82967075 | Msa0431050:CDS | 30.0% | |
| TATAATGTGAGTTGTGATGA+TGG | + | chr3_2:82967106-82967125 | Msa0431050:CDS | 30.0% | |
| ! | CTTTTGACCATAAATCCTTA+TGG | - | chr3_2:82967350-82967369 | None:intergenic | 30.0% |
| CATAAGGATTTATGGTCAAA+AGG | + | chr3_2:82967348-82967367 | Msa0431050:CDS | 30.0% | |
| AGTTGATTAACTTAGGAGTT+GGG | + | chr3_2:82967455-82967474 | Msa0431050:CDS | 30.0% | |
| GGATAAATCAACTTCTGGTA+AGG | + | chr3_2:82966151-82966170 | Msa0431050:CDS | 35.0% | |
| GGTATCAAGATCAACTTCAA+AGG | + | chr3_2:82966223-82966242 | Msa0431050:CDS | 35.0% | |
| !! | AAAGAGGGAAAGTACTAAAG+AGG | + | chr3_2:82966306-82966325 | Msa0431050:CDS | 35.0% |
| !! | AAGAGGGAAAGTACTAAAGA+GGG | + | chr3_2:82966307-82966326 | Msa0431050:CDS | 35.0% |
| ! | TAAAGAGGGAAGGTATAAGA+GGG | + | chr3_2:82966321-82966340 | Msa0431050:CDS | 35.0% |
| !! | GAAGTGTTCTCAGTTGATAA+AGG | + | chr3_2:82966343-82966362 | Msa0431050:CDS | 35.0% |
| !! | TGTTCTCAGTTGATAAAGGA+TGG | + | chr3_2:82966347-82966366 | Msa0431050:CDS | 35.0% |
| !! | GTTGATAAAGGATGGAGTTT+TGG | + | chr3_2:82966355-82966374 | Msa0431050:CDS | 35.0% |
| TGGTAACATTGTCAATACCA+CGG | - | chr3_2:82966403-82966422 | None:intergenic | 35.0% | |
| ATTCACTCTCACCAAATTTG+AGG | + | chr3_2:82966475-82966494 | Msa0431050:CDS | 35.0% | |
| !! | ACCATCCAAAAGTATCTTCT+TGG | + | chr3_2:82966523-82966542 | Msa0431050:CDS | 35.0% |
| ! | TCCAAGAAGATACTTTTGGA+TGG | - | chr3_2:82966527-82966546 | None:intergenic | 35.0% |
| ! | GTCTTCCAAGAAGATACTTT+TGG | - | chr3_2:82966531-82966550 | None:intergenic | 35.0% |
| ! | ACAATCATTCCCCTTTTGAT+TGG | - | chr3_2:82966603-82966622 | None:intergenic | 35.0% |
| !!! | TGTTCTGTTTGTTGTTTTGG+GGG | + | chr3_2:82966695-82966714 | Msa0431050:CDS | 35.0% |
| CATATTCTACAACAGCAACT+CGG | - | chr3_2:82966818-82966837 | None:intergenic | 35.0% | |
| ! | GCAAATTCTTGTTTGCGTTT+GGG | - | chr3_2:82966848-82966867 | None:intergenic | 35.0% |
| ! | TGCAAATTCTTGTTTGCGTT+TGG | - | chr3_2:82966849-82966868 | None:intergenic | 35.0% |
| GTGAACGAAAATTTCACTTG+GGG | + | chr3_2:82966906-82966925 | Msa0431050:CDS | 35.0% | |
| TGTGTAAAGGCAACAAGAAT+TGG | + | chr3_2:82966929-82966948 | Msa0431050:CDS | 35.0% | |
| CTAGGAATACCAAATAAGCT+TGG | + | chr3_2:82967055-82967074 | Msa0431050:CDS | 35.0% | |
| AGATCATTCCCAAGCTTATT+TGG | - | chr3_2:82967067-82967086 | None:intergenic | 35.0% | |
| ! | GTTCAAACGTTTCTTTTCTG+AGG | - | chr3_2:82967269-82967288 | None:intergenic | 35.0% |
| AAGAAACGTTTGAACTTTCG+TGG | + | chr3_2:82967274-82967293 | Msa0431050:CDS | 35.0% | |
| TGGTTTCTATACTGCGATTA+TGG | + | chr3_2:82967294-82967313 | Msa0431050:CDS | 35.0% | |
| TATACTGCGATTATGGAGAA+AGG | + | chr3_2:82967301-82967320 | Msa0431050:CDS | 35.0% | |
| ATACTGCGATTATGGAGAAA+GGG | + | chr3_2:82967302-82967321 | Msa0431050:CDS | 35.0% | |
| GAGGAACAGTTGATTAACTT+AGG | + | chr3_2:82967448-82967467 | Msa0431050:CDS | 35.0% | |
| CAGTTGATTAACTTAGGAGT+TGG | + | chr3_2:82967454-82967473 | Msa0431050:CDS | 35.0% | |
| GAGACACTTTCTTTGTTAAG+TGG | - | chr3_2:82967622-82967641 | None:intergenic | 35.0% | |
| GGATAAATCAACTTCTGGTA+AGG | + | chr3_2:82966151-82966170 | Msa0431050:CDS | 35.0% | |
| GGTATCAAGATCAACTTCAA+AGG | + | chr3_2:82966223-82966242 | Msa0431050:CDS | 35.0% | |
| !! | AAAGAGGGAAAGTACTAAAG+AGG | + | chr3_2:82966306-82966325 | Msa0431050:CDS | 35.0% |
| !! | AAGAGGGAAAGTACTAAAGA+GGG | + | chr3_2:82966307-82966326 | Msa0431050:CDS | 35.0% |
| ! | TAAAGAGGGAAGGTATAAGA+GGG | + | chr3_2:82966321-82966340 | Msa0431050:CDS | 35.0% |
| !! | GAAGTGTTCTCAGTTGATAA+AGG | + | chr3_2:82966343-82966362 | Msa0431050:CDS | 35.0% |
| !! | TGTTCTCAGTTGATAAAGGA+TGG | + | chr3_2:82966347-82966366 | Msa0431050:CDS | 35.0% |
| !! | GTTGATAAAGGATGGAGTTT+TGG | + | chr3_2:82966355-82966374 | Msa0431050:CDS | 35.0% |
| TGGTAACATTGTCAATACCA+CGG | - | chr3_2:82966403-82966422 | None:intergenic | 35.0% | |
| ATTCACTCTCACCAAATTTG+AGG | + | chr3_2:82966475-82966494 | Msa0431050:CDS | 35.0% | |
| !! | ACCATCCAAAAGTATCTTCT+TGG | + | chr3_2:82966523-82966542 | Msa0431050:CDS | 35.0% |
| ! | TCCAAGAAGATACTTTTGGA+TGG | - | chr3_2:82966527-82966546 | None:intergenic | 35.0% |
| ! | GTCTTCCAAGAAGATACTTT+TGG | - | chr3_2:82966531-82966550 | None:intergenic | 35.0% |
| ! | ACAATCATTCCCCTTTTGAT+TGG | - | chr3_2:82966603-82966622 | None:intergenic | 35.0% |
| !!! | TGTTCTGTTTGTTGTTTTGG+GGG | + | chr3_2:82966695-82966714 | Msa0431050:CDS | 35.0% |
| CATATTCTACAACAGCAACT+CGG | - | chr3_2:82966818-82966837 | None:intergenic | 35.0% | |
| ! | GCAAATTCTTGTTTGCGTTT+GGG | - | chr3_2:82966848-82966867 | None:intergenic | 35.0% |
| ! | TGCAAATTCTTGTTTGCGTT+TGG | - | chr3_2:82966849-82966868 | None:intergenic | 35.0% |
| GTGAACGAAAATTTCACTTG+GGG | + | chr3_2:82966906-82966925 | Msa0431050:CDS | 35.0% | |
| TGTGTAAAGGCAACAAGAAT+TGG | + | chr3_2:82966929-82966948 | Msa0431050:CDS | 35.0% | |
| CTAGGAATACCAAATAAGCT+TGG | + | chr3_2:82967055-82967074 | Msa0431050:CDS | 35.0% | |
| AGATCATTCCCAAGCTTATT+TGG | - | chr3_2:82967067-82967086 | None:intergenic | 35.0% | |
| ! | GTTCAAACGTTTCTTTTCTG+AGG | - | chr3_2:82967269-82967288 | None:intergenic | 35.0% |
| AAGAAACGTTTGAACTTTCG+TGG | + | chr3_2:82967274-82967293 | Msa0431050:CDS | 35.0% | |
| TGGTTTCTATACTGCGATTA+TGG | + | chr3_2:82967294-82967313 | Msa0431050:CDS | 35.0% | |
| TATACTGCGATTATGGAGAA+AGG | + | chr3_2:82967301-82967320 | Msa0431050:CDS | 35.0% | |
| ATACTGCGATTATGGAGAAA+GGG | + | chr3_2:82967302-82967321 | Msa0431050:CDS | 35.0% | |
| GAGGAACAGTTGATTAACTT+AGG | + | chr3_2:82967448-82967467 | Msa0431050:CDS | 35.0% | |
| CAGTTGATTAACTTAGGAGT+TGG | + | chr3_2:82967454-82967473 | Msa0431050:CDS | 35.0% | |
| GAGACACTTTCTTTGTTAAG+TGG | - | chr3_2:82967622-82967641 | None:intergenic | 35.0% | |
| ! | TGTTGTTGTTGTTCCTTCCT+CGG | - | chr3_2:82966069-82966088 | None:intergenic | 40.0% |
| !! | AGGCGATCTTTTGACTGTAA+TGG | - | chr3_2:82966113-82966132 | None:intergenic | 40.0% |
| GGAACGGATAAATCAACTTC+TGG | + | chr3_2:82966146-82966165 | Msa0431050:CDS | 40.0% | |
| !! | GTTTCTAAAGCCTCTAGTTC+CGG | + | chr3_2:82966173-82966192 | Msa0431050:CDS | 40.0% |
| TTTAACAGAACCGGAACTAG+AGG | - | chr3_2:82966186-82966205 | None:intergenic | 40.0% | |
| GTTTCTAATTCAGTGGGTAG+TGG | + | chr3_2:82966281-82966300 | Msa0431050:CDS | 40.0% | |
| ! | CTAAAGAGGGAAGGTATAAG+AGG | + | chr3_2:82966320-82966339 | Msa0431050:CDS | 40.0% |
| !!! | AAGGATGGAGTTTTGGTTTC+TGG | + | chr3_2:82966362-82966381 | Msa0431050:CDS | 40.0% |
| !!! | AGGATGGAGTTTTGGTTTCT+GGG | + | chr3_2:82966363-82966382 | Msa0431050:CDS | 40.0% |
| ! | ACAAGAGATACTCCCTCTTT+TGG | - | chr3_2:82966423-82966442 | None:intergenic | 40.0% |
| ACAAGCATGAGCCTCAAATT+TGG | - | chr3_2:82966489-82966508 | None:intergenic | 40.0% | |
| TCGTTCCACTCTGATTGTTT+AGG | + | chr3_2:82966749-82966768 | Msa0431050:CDS | 40.0% | |
| ATTTCACTTGGGGTGTGTAA+AGG | + | chr3_2:82966916-82966935 | Msa0431050:CDS | 40.0% | |
| !! | TGGTTTTGCCATGAAGTTTG+TGG | + | chr3_2:82967004-82967023 | Msa0431050:CDS | 40.0% |
| ! | GGTTTTGCCATGAAGTTTGT+GGG | + | chr3_2:82967005-82967024 | Msa0431050:CDS | 40.0% |
| ACATGTTCCCACAAACTTCA+TGG | - | chr3_2:82967015-82967034 | None:intergenic | 40.0% | |
| AGCTTGGGAATGATCTAACT+TGG | + | chr3_2:82967071-82967090 | Msa0431050:CDS | 40.0% | |
| ! | TGATGGAGATTTTGCTGATG+AGG | + | chr3_2:82967123-82967142 | Msa0431050:CDS | 40.0% |
| CTGATGAGGAGTTTCATCAA+AGG | + | chr3_2:82967137-82967156 | Msa0431050:CDS | 40.0% | |
| ! | AAGGAAGCGTAAATTGACTG+TGG | + | chr3_2:82967156-82967175 | Msa0431050:CDS | 40.0% |
| TACTGCGATTATGGAGAAAG+GGG | + | chr3_2:82967303-82967322 | Msa0431050:CDS | 40.0% | |
| GTGGCAACCATAAGGATTTA+TGG | + | chr3_2:82967340-82967359 | Msa0431050:CDS | 40.0% | |
| ! | GGTTGCTGAGATTGTTTTCA+TGG | + | chr3_2:82967369-82967388 | Msa0431050:CDS | 40.0% |
| !! | AATGTGCCGTTTGTTGATGA+AGG | + | chr3_2:82967420-82967439 | Msa0431050:CDS | 40.0% |
| !! | ATGTGCCGTTTGTTGATGAA+GGG | + | chr3_2:82967421-82967440 | Msa0431050:CDS | 40.0% |
| ! | TGTTGTTGTTGTTCCTTCCT+CGG | - | chr3_2:82966069-82966088 | None:intergenic | 40.0% |
| !! | AGGCGATCTTTTGACTGTAA+TGG | - | chr3_2:82966113-82966132 | None:intergenic | 40.0% |
| GGAACGGATAAATCAACTTC+TGG | + | chr3_2:82966146-82966165 | Msa0431050:CDS | 40.0% | |
| !! | GTTTCTAAAGCCTCTAGTTC+CGG | + | chr3_2:82966173-82966192 | Msa0431050:CDS | 40.0% |
| TTTAACAGAACCGGAACTAG+AGG | - | chr3_2:82966186-82966205 | None:intergenic | 40.0% | |
| GTTTCTAATTCAGTGGGTAG+TGG | + | chr3_2:82966281-82966300 | Msa0431050:CDS | 40.0% | |
| ! | CTAAAGAGGGAAGGTATAAG+AGG | + | chr3_2:82966320-82966339 | Msa0431050:CDS | 40.0% |
| !!! | AAGGATGGAGTTTTGGTTTC+TGG | + | chr3_2:82966362-82966381 | Msa0431050:CDS | 40.0% |
| !!! | AGGATGGAGTTTTGGTTTCT+GGG | + | chr3_2:82966363-82966382 | Msa0431050:CDS | 40.0% |
| ! | ACAAGAGATACTCCCTCTTT+TGG | - | chr3_2:82966423-82966442 | None:intergenic | 40.0% |
| ACAAGCATGAGCCTCAAATT+TGG | - | chr3_2:82966489-82966508 | None:intergenic | 40.0% | |
| TCGTTCCACTCTGATTGTTT+AGG | + | chr3_2:82966749-82966768 | Msa0431050:CDS | 40.0% | |
| ATTTCACTTGGGGTGTGTAA+AGG | + | chr3_2:82966916-82966935 | Msa0431050:CDS | 40.0% | |
| !! | TGGTTTTGCCATGAAGTTTG+TGG | + | chr3_2:82967004-82967023 | Msa0431050:CDS | 40.0% |
| ! | GGTTTTGCCATGAAGTTTGT+GGG | + | chr3_2:82967005-82967024 | Msa0431050:CDS | 40.0% |
| ACATGTTCCCACAAACTTCA+TGG | - | chr3_2:82967015-82967034 | None:intergenic | 40.0% | |
| AGCTTGGGAATGATCTAACT+TGG | + | chr3_2:82967071-82967090 | Msa0431050:CDS | 40.0% | |
| ! | TGATGGAGATTTTGCTGATG+AGG | + | chr3_2:82967123-82967142 | Msa0431050:CDS | 40.0% |
| CTGATGAGGAGTTTCATCAA+AGG | + | chr3_2:82967137-82967156 | Msa0431050:CDS | 40.0% | |
| ! | AAGGAAGCGTAAATTGACTG+TGG | + | chr3_2:82967156-82967175 | Msa0431050:CDS | 40.0% |
| TACTGCGATTATGGAGAAAG+GGG | + | chr3_2:82967303-82967322 | Msa0431050:CDS | 40.0% | |
| GTGGCAACCATAAGGATTTA+TGG | + | chr3_2:82967340-82967359 | Msa0431050:CDS | 40.0% | |
| ! | GGTTGCTGAGATTGTTTTCA+TGG | + | chr3_2:82967369-82967388 | Msa0431050:CDS | 40.0% |
| !! | AATGTGCCGTTTGTTGATGA+AGG | + | chr3_2:82967420-82967439 | Msa0431050:CDS | 40.0% |
| !! | ATGTGCCGTTTGTTGATGAA+GGG | + | chr3_2:82967421-82967440 | Msa0431050:CDS | 40.0% |
| ! | TCAGTGGGTAGTGGTAAAAG+AGG | + | chr3_2:82966290-82966309 | Msa0431050:CDS | 45.0% |
| ! | CAGTGGGTAGTGGTAAAAGA+GGG | + | chr3_2:82966291-82966310 | Msa0431050:CDS | 45.0% |
| !! | GGGAAAGTACTAAAGAGGGA+AGG | + | chr3_2:82966311-82966330 | Msa0431050:CDS | 45.0% |
| !! | AGAGGGAGTATCTCTTGTGA+AGG | + | chr3_2:82966425-82966444 | Msa0431050:CDS | 45.0% |
| GGAAGACGGAACTTCATTGT+TGG | + | chr3_2:82966544-82966563 | Msa0431050:CDS | 45.0% | |
| CGGAACTTCATTGTTGGACT+TGG | + | chr3_2:82966550-82966569 | Msa0431050:CDS | 45.0% | |
| AGCTCAGAGCTTTCATTCGA+CGG | - | chr3_2:82966577-82966596 | None:intergenic | 45.0% | |
| TCTGAGCTCAGCCAATCAAA+AGG | + | chr3_2:82966589-82966608 | Msa0431050:CDS | 45.0% | |
| CTGAGCTCAGCCAATCAAAA+GGG | + | chr3_2:82966590-82966609 | Msa0431050:CDS | 45.0% | |
| TGAGCTCAGCCAATCAAAAG+GGG | + | chr3_2:82966591-82966610 | Msa0431050:CDS | 45.0% | |
| CAATCAGAGTGGAACGAAGA+AGG | - | chr3_2:82966746-82966765 | None:intergenic | 45.0% | |
| TGGGACCTAAACAATCAGAG+TGG | - | chr3_2:82966757-82966776 | None:intergenic | 45.0% | |
| TTTAGGTCCCAAACGAGATC+CGG | + | chr3_2:82966766-82966785 | Msa0431050:CDS | 45.0% | |
| CGTAAATTGACTGTGGCTCT+TGG | + | chr3_2:82967163-82967182 | Msa0431050:CDS | 45.0% | |
| ACTGCGATTATGGAGAAAGG+GGG | + | chr3_2:82967304-82967323 | Msa0431050:CDS | 45.0% | |
| TGAGTTCTGTGGCAACCATA+AGG | + | chr3_2:82967332-82967351 | Msa0431050:CDS | 45.0% | |
| !! | TGTGCCGTTTGTTGATGAAG+GGG | + | chr3_2:82967422-82967441 | Msa0431050:CDS | 45.0% |
| CAAGCCCCTTCATCAACAAA+CGG | - | chr3_2:82967429-82967448 | None:intergenic | 45.0% | |
| ! | TTTGTTGATGAAGGGGCTTG+AGG | + | chr3_2:82967429-82967448 | Msa0431050:CDS | 45.0% |
| TAACTTAGGAGTTGGGAGCT+TGG | + | chr3_2:82967462-82967481 | Msa0431050:CDS | 45.0% | |
| !!! | CTTGGTTTTGCATTCCTCCA+AGG | + | chr3_2:82967480-82967499 | Msa0431050:CDS | 45.0% |
| AGTGTCTATAGCATCCTTGG+AGG | - | chr3_2:82967497-82967516 | None:intergenic | 45.0% | |
| CCAAGTGTCTATAGCATCCT+TGG | - | chr3_2:82967500-82967519 | None:intergenic | 45.0% | |
| CCAAGGATGCTATAGACACT+TGG | + | chr3_2:82967497-82967516 | Msa0431050:CDS | 45.0% | |
| ! | TCAGTGGGTAGTGGTAAAAG+AGG | + | chr3_2:82966290-82966309 | Msa0431050:CDS | 45.0% |
| ! | CAGTGGGTAGTGGTAAAAGA+GGG | + | chr3_2:82966291-82966310 | Msa0431050:CDS | 45.0% |
| !! | GGGAAAGTACTAAAGAGGGA+AGG | + | chr3_2:82966311-82966330 | Msa0431050:CDS | 45.0% |
| !! | AGAGGGAGTATCTCTTGTGA+AGG | + | chr3_2:82966425-82966444 | Msa0431050:CDS | 45.0% |
| GGAAGACGGAACTTCATTGT+TGG | + | chr3_2:82966544-82966563 | Msa0431050:CDS | 45.0% | |
| CGGAACTTCATTGTTGGACT+TGG | + | chr3_2:82966550-82966569 | Msa0431050:CDS | 45.0% | |
| AGCTCAGAGCTTTCATTCGA+CGG | - | chr3_2:82966577-82966596 | None:intergenic | 45.0% | |
| TCTGAGCTCAGCCAATCAAA+AGG | + | chr3_2:82966589-82966608 | Msa0431050:CDS | 45.0% | |
| CTGAGCTCAGCCAATCAAAA+GGG | + | chr3_2:82966590-82966609 | Msa0431050:CDS | 45.0% | |
| TGAGCTCAGCCAATCAAAAG+GGG | + | chr3_2:82966591-82966610 | Msa0431050:CDS | 45.0% | |
| CAATCAGAGTGGAACGAAGA+AGG | - | chr3_2:82966746-82966765 | None:intergenic | 45.0% | |
| TGGGACCTAAACAATCAGAG+TGG | - | chr3_2:82966757-82966776 | None:intergenic | 45.0% | |
| TTTAGGTCCCAAACGAGATC+CGG | + | chr3_2:82966766-82966785 | Msa0431050:CDS | 45.0% | |
| CGTAAATTGACTGTGGCTCT+TGG | + | chr3_2:82967163-82967182 | Msa0431050:CDS | 45.0% | |
| ACTGCGATTATGGAGAAAGG+GGG | + | chr3_2:82967304-82967323 | Msa0431050:CDS | 45.0% | |
| TGAGTTCTGTGGCAACCATA+AGG | + | chr3_2:82967332-82967351 | Msa0431050:CDS | 45.0% | |
| !! | TGTGCCGTTTGTTGATGAAG+GGG | + | chr3_2:82967422-82967441 | Msa0431050:CDS | 45.0% |
| CAAGCCCCTTCATCAACAAA+CGG | - | chr3_2:82967429-82967448 | None:intergenic | 45.0% | |
| ! | TTTGTTGATGAAGGGGCTTG+AGG | + | chr3_2:82967429-82967448 | Msa0431050:CDS | 45.0% |
| TAACTTAGGAGTTGGGAGCT+TGG | + | chr3_2:82967462-82967481 | Msa0431050:CDS | 45.0% | |
| !!! | CTTGGTTTTGCATTCCTCCA+AGG | + | chr3_2:82967480-82967499 | Msa0431050:CDS | 45.0% |
| AGTGTCTATAGCATCCTTGG+AGG | - | chr3_2:82967497-82967516 | None:intergenic | 45.0% | |
| CCAAGTGTCTATAGCATCCT+TGG | - | chr3_2:82967500-82967519 | None:intergenic | 45.0% | |
| CCAAGGATGCTATAGACACT+TGG | + | chr3_2:82967497-82967516 | Msa0431050:CDS | 45.0% | |
| AAAGCGACAGAGAGAATCCG+AGG | + | chr3_2:82966049-82966068 | Msa0431050:CDS | 50.0% | |
| AGATCGCCTGAGAGAATCTG+AGG | + | chr3_2:82966124-82966143 | Msa0431050:CDS | 50.0% | |
| GATCGCCTGAGAGAATCTGA+GGG | + | chr3_2:82966125-82966144 | Msa0431050:CDS | 50.0% | |
| CCTGAGAGAATCTGAGGGAA+CGG | + | chr3_2:82966130-82966149 | Msa0431050:CDS | 50.0% | |
| ! | GGGACTATTGTTTTCTGCCG+TGG | + | chr3_2:82966383-82966402 | Msa0431050:CDS | 50.0% |
| AGACCATCCGGATCTCGTTT+GGG | - | chr3_2:82966776-82966795 | None:intergenic | 50.0% | |
| CATGTACCATCCAGACCATC+CGG | - | chr3_2:82966788-82966807 | None:intergenic | 50.0% | |
| AGGGGGTAAAGTGAGTTCTG+TGG | + | chr3_2:82967321-82967340 | Msa0431050:CDS | 50.0% | |
| AAAGCGACAGAGAGAATCCG+AGG | + | chr3_2:82966049-82966068 | Msa0431050:CDS | 50.0% | |
| AGATCGCCTGAGAGAATCTG+AGG | + | chr3_2:82966124-82966143 | Msa0431050:CDS | 50.0% | |
| GATCGCCTGAGAGAATCTGA+GGG | + | chr3_2:82966125-82966144 | Msa0431050:CDS | 50.0% | |
| CCTGAGAGAATCTGAGGGAA+CGG | + | chr3_2:82966130-82966149 | Msa0431050:CDS | 50.0% | |
| ! | GGGACTATTGTTTTCTGCCG+TGG | + | chr3_2:82966383-82966402 | Msa0431050:CDS | 50.0% |
| AGACCATCCGGATCTCGTTT+GGG | - | chr3_2:82966776-82966795 | None:intergenic | 50.0% | |
| CATGTACCATCCAGACCATC+CGG | - | chr3_2:82966788-82966807 | None:intergenic | 50.0% | |
| AGGGGGTAAAGTGAGTTCTG+TGG | + | chr3_2:82967321-82967340 | Msa0431050:CDS | 50.0% | |
| CGACAGAGAGAATCCGAGGA+AGG | + | chr3_2:82966053-82966072 | Msa0431050:CDS | 55.0% | |
| CCGTTCCCTCAGATTCTCTC+AGG | - | chr3_2:82966133-82966152 | None:intergenic | 55.0% | |
| CAGACCATCCGGATCTCGTT+TGG | - | chr3_2:82966777-82966796 | None:intergenic | 55.0% | |
| CAAACGAGATCCGGATGGTC+TGG | + | chr3_2:82966775-82966794 | Msa0431050:CDS | 55.0% | |
| CGGATGGTCTGGATGGTACA+TGG | + | chr3_2:82966786-82966805 | Msa0431050:CDS | 55.0% | |
| ! | GGTGTGCTGCGTGAGAGTTT+TGG | + | chr3_2:82967184-82967203 | Msa0431050:CDS | 55.0% |
| CGACAGAGAGAATCCGAGGA+AGG | + | chr3_2:82966053-82966072 | Msa0431050:CDS | 55.0% | |
| CCGTTCCCTCAGATTCTCTC+AGG | - | chr3_2:82966133-82966152 | None:intergenic | 55.0% | |
| CAGACCATCCGGATCTCGTT+TGG | - | chr3_2:82966777-82966796 | None:intergenic | 55.0% | |
| CAAACGAGATCCGGATGGTC+TGG | + | chr3_2:82966775-82966794 | Msa0431050:CDS | 55.0% | |
| CGGATGGTCTGGATGGTACA+TGG | + | chr3_2:82966786-82966805 | Msa0431050:CDS | 55.0% | |
| ! | GGTGTGCTGCGTGAGAGTTT+TGG | + | chr3_2:82967184-82967203 | Msa0431050:CDS | 55.0% |
| GGTCCCAAACGAGATCCGGA+TGG | + | chr3_2:82966770-82966789 | Msa0431050:CDS | 60.0% | |
| CGAGATCCGGATGGTCTGGA+TGG | + | chr3_2:82966779-82966798 | Msa0431050:CDS | 60.0% | |
| GGTCCCAAACGAGATCCGGA+TGG | + | chr3_2:82966770-82966789 | Msa0431050:CDS | 60.0% | |
| CGAGATCCGGATGGTCTGGA+TGG | + | chr3_2:82966779-82966798 | Msa0431050:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 82966020 | 82967651 | 82966020 | ID=Msa0431050;Name=Msa0431050 |
| chr3_2 | mRNA | 82966020 | 82967651 | 82966020 | ID=Msa0431050-mRNA-1;Parent=Msa0431050;Name=Msa0431050-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|-1|0|1|-1|1|1|0|543 |
| chr3_2 | exon | 82966020 | 82967651 | 82966020 | ID=Msa0431050-mRNA-1:exon:23120;Parent=Msa0431050-mRNA-1 |
| chr3_2 | CDS | 82966020 | 82967651 | 82966020 | ID=Msa0431050-mRNA-1:cds;Parent=Msa0431050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
