AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0433380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0433380 MtrunA17_Chr1g0203051 45.527 626 325 4 6 624 5 621 0.0 575
Msa0433380 MtrunA17_Chr2g0287651 35.694 720 439 7 73 784 66 769 4.16e-151 464
Msa0433380 MtrunA17_Chr2g0308841 78.319 226 49 0 411 636 1 226 8.62e-129 385
Msa0433380 MtrunA17_Chr5g0448761 31.588 592 391 8 84 662 62 652 5.97e-102 332
Msa0433380 MtrunA17_Chr1g0202341 31.383 564 372 8 83 637 52 609 2.66e-90 299
Msa0433380 MtrunA17_Chr2g0324011 29.696 559 378 8 88 637 16 568 1.05e-82 276
Msa0433380 MtrunA17_Chr1g0198761 28.294 721 459 19 88 775 53 748 8.47e-75 258
Msa0433380 MtrunA17_Chr2g0296781 28.186 667 436 18 97 745 12 653 7.15e-74 255
Msa0433380 MtrunA17_Chr5g0441581 26.906 669 442 17 88 736 38 679 9.82e-74 254
Msa0433380 MtrunA17_Chr8g0363841 28.261 598 398 9 55 640 2 580 1.15e-72 251
Msa0433380 MtrunA17_Chr1g0203721 28.622 566 377 10 88 637 69 623 4.80e-70 248
Msa0433380 MtrunA17_Chr3g0118611 29.459 499 335 6 238 722 96 591 1.32e-69 244
Msa0433380 MtrunA17_Chr6g0477261 29.496 556 356 14 208 745 5 542 5.85e-69 240
Msa0433380 MtrunA17_Chr5g0448511 29.500 400 274 4 247 640 3 400 1.76e-67 233
Msa0433380 MtrunA17_Chr2g0287061 28.956 594 362 16 59 640 159 704 3.52e-67 238
Msa0433380 MtrunA17_Chr5g0440451 27.454 601 390 11 88 662 49 629 9.63e-67 239
Msa0433380 MtrunA17_Chr1g0207551 28.826 562 378 11 87 637 39 589 2.03e-66 236
Msa0433380 MtrunA17_Chr6g0458391 25.518 627 415 14 33 637 169 765 1.55e-65 233
Msa0433380 MtrunA17_Chr6g0458391 35.714 126 70 4 87 208 96 214 1.25e-11 68.6
Msa0433380 MtrunA17_Chr3g0082121 26.557 610 413 12 39 637 5 590 4.32e-63 225
Msa0433380 MtrunA17_Chr3g0080351 27.671 571 365 12 87 637 81 623 4.58e-60 219
Msa0433380 MtrunA17_Chr1g0196541 27.110 557 378 10 97 637 12 556 7.38e-60 216
Msa0433380 MtrunA17_Chr5g0431001 30.166 421 265 8 88 486 67 480 4.59e-59 209
Msa0433380 MtrunA17_Chr2g0276841 27.383 577 373 16 88 639 76 631 2.23e-56 206
Msa0433380 MtrunA17_Chr2g0291591 26.969 508 348 10 83 579 65 560 1.90e-55 201
Msa0433380 MtrunA17_Chr2g0291581 25.089 562 388 11 87 634 76 618 1.50e-53 197
Msa0433380 MtrunA17_Chr2g0290391 27.065 569 378 12 88 634 57 610 3.74e-53 196
Msa0433380 MtrunA17_Chr2g0329031 23.699 692 479 15 87 752 19 687 1.17e-52 196
Msa0433380 MtrunA17_Chr2g0294841 28.246 439 286 10 88 505 51 481 4.96e-46 176
Msa0433380 MtrunA17_Chr1g0164591 28.239 301 204 2 174 469 14 307 2.97e-39 148
Msa0433380 MtrunA17_Chr1g0171741 40.373 161 94 2 53 212 103 262 6.42e-31 122
Msa0433380 MtrunA17_Chr8g0389811 43.307 127 72 0 67 193 69 195 8.40e-30 117
Msa0433380 MtrunA17_Chr7g0258861 27.491 291 197 7 88 370 16 300 5.25e-29 118
Msa0433380 MtrunA17_Chr2g0331371 42.038 157 89 1 32 186 3 159 3.49e-28 112
Msa0433380 MtrunA17_Chr6g0473421 46.316 95 51 0 64 158 37 131 2.08e-23 97.4
Msa0433380 MtrunA17_Chr1g0172931 36.508 126 80 0 39 164 33 158 5.57e-19 84.7
Msa0433380 MtrunA17_Chr8g0340801 34.579 107 70 0 193 299 1 107 1.98e-18 81.6
Msa0433380 MtrunA17_Chr1g0149131 30.435 115 65 3 361 465 1 110 2.56e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0433380 AT4G38180.1 30.658 623 410 10 38 640 17 637 2.24e-96 318
Msa0433380 AT3G06250.2 30.303 561 330 15 87 637 195 704 7.35e-74 256
Msa0433380 AT3G06250.1 30.303 561 330 15 87 637 195 704 7.35e-74 256
Msa0433380 AT3G06250.3 30.303 561 330 15 87 637 195 704 7.35e-74 256
Msa0433380 AT4G15090.1 27.526 683 444 18 87 746 56 710 1.25e-72 254
Msa0433380 AT4G15090.5 27.526 683 444 18 87 746 56 710 1.25e-72 254
Msa0433380 AT4G15090.3 27.526 683 444 18 87 746 56 710 1.25e-72 254
Msa0433380 AT4G15090.2 27.526 683 444 18 87 746 56 710 1.25e-72 254
Msa0433380 AT4G15090.4 27.526 683 444 18 87 746 56 710 1.25e-72 254
Msa0433380 AT5G18960.2 30.536 560 333 17 87 637 216 728 2.43e-69 244
Msa0433380 AT5G18960.1 30.536 560 333 17 87 637 216 728 2.43e-69 244
Msa0433380 AT2G27110.2 27.331 622 400 12 24 640 8 582 3.22e-68 242
Msa0433380 AT2G27110.1 27.331 622 400 12 24 640 8 582 3.22e-68 242
Msa0433380 AT2G27110.3 30.556 396 267 3 250 640 45 437 1.92e-65 232
Msa0433380 AT1G80010.1 29.138 580 384 13 87 647 100 671 3.51e-62 223
Msa0433380 AT3G22170.2 27.604 576 360 14 87 637 75 618 3.21e-60 219
Msa0433380 AT3G22170.1 27.604 576 360 14 87 637 75 618 3.21e-60 219
Msa0433380 AT1G76320.3 27.580 562 379 11 87 638 2 545 4.35e-59 213
Msa0433380 AT1G76320.2 27.580 562 379 11 87 638 2 545 6.66e-59 214
Msa0433380 AT1G76320.1 27.580 562 379 11 87 638 2 545 8.40e-59 214
Msa0433380 AT1G76320.4 27.580 562 379 11 87 638 2 545 8.40e-59 214
Msa0433380 AT1G52520.1 27.069 580 384 14 87 649 90 647 5.85e-58 211
Msa0433380 AT1G10240.2 28.319 565 377 15 88 636 54 606 1.45e-57 209
Msa0433380 AT1G10240.1 28.319 565 377 15 88 636 54 606 1.45e-57 209
Msa0433380 AT4G38170.1 29.211 380 253 6 279 647 38 412 5.15e-55 199
Msa0433380 AT2G32250.8 25.632 554 360 11 87 634 2 509 1.56e-52 196
Msa0433380 AT2G32250.2 25.632 554 360 11 87 634 43 550 1.60e-52 196
Msa0433380 AT2G32250.4 25.632 554 360 11 87 634 43 550 1.60e-52 196
Msa0433380 AT2G32250.5 25.632 554 360 11 87 634 43 550 1.67e-52 196
Msa0433380 AT2G32250.7 25.632 554 360 11 87 634 2 509 1.95e-52 196
Msa0433380 AT2G32250.6 25.632 554 360 11 87 634 43 550 2.08e-52 196
Msa0433380 AT2G32250.1 25.632 554 360 11 87 634 43 550 2.08e-52 196
Msa0433380 AT2G32250.3 25.632 554 360 11 87 634 43 550 2.08e-52 196
Msa0433380 AT5G28530.3 26.842 570 378 16 88 634 61 614 4.47e-49 185
Msa0433380 AT5G28530.2 26.842 570 378 16 88 634 61 614 4.47e-49 185
Msa0433380 AT5G28530.1 26.923 572 379 16 88 634 61 618 1.58e-48 183
Msa0433380 AT4G19990.3 24.471 662 433 15 87 722 26 646 3.52e-47 180
Msa0433380 AT4G19990.4 24.471 662 433 15 87 722 26 646 3.52e-47 180
Msa0433380 AT4G19990.7 24.471 662 433 15 87 722 40 660 3.78e-47 180
Msa0433380 AT4G19990.5 24.471 662 433 15 87 722 26 646 3.86e-47 180
Msa0433380 AT4G19990.6 24.471 662 433 15 87 722 26 646 4.15e-47 180
Msa0433380 AT4G19990.2 24.471 662 433 15 87 722 26 646 4.15e-47 180
Msa0433380 AT4G19990.1 24.204 628 410 14 120 722 3 589 6.15e-44 170
Msa0433380 AT5G28530.5 24.552 558 343 17 88 634 61 551 1.28e-31 131
Msa0433380 AT5G28530.4 24.643 560 344 17 88 634 61 555 3.72e-31 130

Find 160 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGGCTTTGGCAGATGCTTC+TGG 0.082781 3_2:+85768037 Msa0433380:CDS
CAAATTGCTGCAAGGTATTC+TGG 0.243533 3_2:+85769330 Msa0433380:CDS
CATCACAGGAAGACCGTAAT+TGG 0.250209 3_2:-85768920 None:intergenic
TTTGTTCATGTCAAGGTTAC+AGG 0.251328 3_2:+85767753 Msa0433380:CDS
GGGCTTTGGCAGATGCTTCT+GGG 0.266190 3_2:+85768038 Msa0433380:CDS
CTGGGCAAAACCAAACATTT+TGG 0.278132 3_2:-85769240 None:intergenic
TCAGAGATGGTTCAAAAGTT+TGG 0.288835 3_2:+85768664 Msa0433380:CDS
CACGAGCATTTCAAAATAAC+TGG 0.290463 3_2:-85769141 None:intergenic
ATGCCAATGGATCTCTCTAT+TGG 0.291523 3_2:+85769301 Msa0433380:CDS
CCGCAACAACTTTACACATT+TGG 0.310861 3_2:-85769359 None:intergenic
CTGTGATGCAGACCAGTTTA+CGG 0.319178 3_2:+85768935 Msa0433380:CDS
CGTATGAACTATGAGATATT+TGG 0.322887 3_2:+85768259 Msa0433380:CDS
CAGAGATGGTTCAAAAGTTT+GGG 0.327286 3_2:+85768665 Msa0433380:CDS
GATCACAATCATGCTATGTT+AGG 0.329562 3_2:+85767908 Msa0433380:CDS
ATCAGAGGAAGTTTCTTTGC+TGG 0.351635 3_2:+85768751 Msa0433380:CDS
TTCAGATAAGACATAAAATC+AGG 0.354985 3_2:-85768592 None:intergenic
TGATGATCTTCCAAAATGTT+TGG 0.355568 3_2:+85769230 Msa0433380:CDS
ATCTTAGCGGTGAAATTAAT+CGG 0.357846 3_2:+85769427 Msa0433380:CDS
TTTGATTACCAATCCAATTA+CGG 0.365424 3_2:+85768907 Msa0433380:CDS
TCCGATTATGATAAAAGATA+TGG 0.367150 3_2:+85767550 Msa0433380:CDS
AACTGAAAATCCTGACGTTC+TGG 0.369216 3_2:-85767675 None:intergenic
TTCAAATTCAGTTGAAGGCT+TGG 0.371929 3_2:+85767505 Msa0433380:CDS
GACAGTTGTACTTGTTCTTC+CGG 0.377311 3_2:-85768309 None:intergenic
CACAATCTGTGGTGCGCTGC+AGG 0.385631 3_2:-85768526 None:intergenic
TTAACAAATTTGAAGATTTG+TGG 0.386614 3_2:+85768641 Msa0433380:CDS
GGAGGCTTGAGCGGTTGTTC+TGG 0.392707 3_2:+85768221 Msa0433380:CDS
CGCACCACAGATTGTGTGCT+TGG 0.405774 3_2:+85768533 Msa0433380:CDS
GGAAGTTCAAATTCAGTTGA+AGG 0.407056 3_2:+85767500 Msa0433380:CDS
TGTTGGTTTGCCAGAACGTC+AGG 0.409400 3_2:+85767665 Msa0433380:CDS
TCAAGGTTACAGGGAGGATA+GGG 0.412309 3_2:+85767763 Msa0433380:CDS
GTACCAAATGTATGGGGCTT+TGG 0.414713 3_2:+85768024 Msa0433380:CDS
CTGCCAAAGCCCCATACATT+TGG 0.417656 3_2:-85768027 None:intergenic
ACACAAACTTGCAGCGTTTG+TGG 0.418146 3_2:+85769603 Msa0433380:CDS
TGCCAATGGATCTCTCTATT+GGG 0.422416 3_2:+85769302 Msa0433380:CDS
TGGGACAATACGTGCATTCT+CGG 0.427747 3_2:+85768815 Msa0433380:CDS
TTTCTCTAATGACCGTAAAC+TGG 0.429918 3_2:-85768947 None:intergenic
TGTCCGTTTGTTGTGTTCTC+AGG 0.434603 3_2:+85768328 Msa0433380:CDS
CGTAAACTGGTCTGCATCAC+AGG 0.434963 3_2:-85768934 None:intergenic
GAAATGCTCGTGTCTTAGAA+TGG 0.443162 3_2:+85769152 Msa0433380:CDS
CAGCCATACATATGTTTCTT+CGG 0.445264 3_2:-85768407 None:intergenic
GATTGAATCTTTAGCAAACT+TGG 0.446051 3_2:-85769268 None:intergenic
TTTAGCAAACTTGGACCACC+TGG 0.451664 3_2:-85769259 None:intergenic
CAAAATACTGTGGTGATGGT+AGG 0.453258 3_2:+85769091 Msa0433380:CDS
TGCAAAATTTCGAGTCCACT+TGG 0.456820 3_2:+85767844 Msa0433380:CDS
ATAAGACCGTACCAAATGTA+TGG 0.463653 3_2:+85768016 Msa0433380:CDS
GGCTTTGGCAGATGCTTCTG+GGG 0.464116 3_2:+85768039 Msa0433380:CDS
TTAATCGGCTTAATTTGAAA+AGG 0.468189 3_2:+85769442 Msa0433380:CDS
GGAATGCTTCCACCAACATT+GGG 0.470110 3_2:+85768566 Msa0433380:CDS
CCATCAGTCGCATCAATGTT+GGG 0.475672 3_2:+85769658 Msa0433380:CDS
GATGGTTCAAAAGTTTGGGT+TGG 0.478957 3_2:+85768669 Msa0433380:CDS
AGGAATGCTTCCACCAACAT+TGG 0.480486 3_2:+85768565 Msa0433380:CDS
CCCTTTGTTCTTACACATTG+TGG 0.482784 3_2:-85769537 None:intergenic
ACCTTTGTTTGTTCATGTCA+AGG 0.486075 3_2:+85767746 Msa0433380:CDS
TGCAGCGTTTGTGGTGTCAT+AGG 0.487465 3_2:+85769612 Msa0433380:CDS
GCGTCTACCAGGAGTACCAC+TGG 0.495794 3_2:-85769574 None:intergenic
ATGAACAAACAAAGGTCTGC+TGG 0.497463 3_2:-85767739 None:intergenic
CGTATTGTCCCATGTGGCTA+TGG 0.499218 3_2:-85768804 None:intergenic
ATCTACGTTGCTTGGCAACC+TGG 0.500008 3_2:-85768102 None:intergenic
TCCATCAGTCGCATCAATGT+TGG 0.500041 3_2:+85769657 Msa0433380:CDS
GTGTAAAGTTGTTGCGGAGA+TGG 0.500773 3_2:+85769365 Msa0433380:CDS
TGTTGTACGCATCCTCGTCT+TGG 0.504705 3_2:-85769719 None:intergenic
AAAATACTGTGGTGATGGTA+GGG 0.508814 3_2:+85769092 Msa0433380:CDS
AAATTCAGTTGAAGGCTTGG+AGG 0.512939 3_2:+85767508 Msa0433380:CDS
AAACAATGATCTACGTTGCT+TGG 0.514058 3_2:-85768110 None:intergenic
TTGGGTTGGAAAACAACAGT+TGG 0.516327 3_2:+85768683 Msa0433380:CDS
GTCAAGGTTACAGGGAGGAT+AGG 0.518923 3_2:+85767762 Msa0433380:CDS
TGAAGATTTGTGGTCAGAGA+TGG 0.520140 3_2:+85768651 Msa0433380:CDS
TGTGTGCTTGGCATCTGTTA+AGG 0.522818 3_2:+85768545 Msa0433380:CDS
ATCAGGAATCCCAATGTTGG+TGG 0.524563 3_2:-85768575 None:intergenic
GCTTTGGCAGATGCTTCTGG+GGG 0.524995 3_2:+85768040 Msa0433380:CDS
CGTCTACCAGGAGTACCACT+GGG 0.526093 3_2:-85769573 None:intergenic
CCACAATGTGTAAGAACAAA+GGG 0.527111 3_2:+85769537 Msa0433380:CDS
CAGGAAGACCGTAATTGGAT+TGG 0.527713 3_2:-85768915 None:intergenic
TGTGTGCGTCTGCGTCTACC+AGG 0.527784 3_2:-85769585 None:intergenic
TTCACTTACATTGTAACCCT+CGG 0.528797 3_2:-85769742 None:intergenic
TGTCTTAGAATGGAATCGCT+TGG 0.529768 3_2:+85769162 Msa0433380:CDS
CAAAGCAATGGAGATGTCAA+TGG 0.531347 3_2:+85767479 Msa0433380:CDS
CCCAACATTGATGCGACTGA+TGG 0.535314 3_2:-85769658 None:intergenic
AAAGCTGTATTGACGATGAT+AGG 0.536822 3_2:+85768200 Msa0433380:CDS
TAAGACCGTACCAAATGTAT+GGG 0.537974 3_2:+85768017 Msa0433380:CDS
ACACCTGAGAACACAACAAA+CGG 0.540110 3_2:-85768331 None:intergenic
GTTGTACTTGTTCTTCCGGT+AGG 0.540774 3_2:-85768305 None:intergenic
CTTCCGGTAGGTTGCATCGA+AGG 0.540939 3_2:-85768293 None:intergenic
ACACCATCGCGCTCTAACAA+AGG 0.543044 3_2:-85767314 None:intergenic
AGAAACATATGTATGGCTGT+TGG 0.549469 3_2:+85768411 Msa0433380:CDS
ATTGAGCGTAGTCGAAAAGC+TGG 0.551197 3_2:+85767992 Msa0433380:CDS
CACAATCATGCTATGTTAGG+AGG 0.553509 3_2:+85767911 Msa0433380:CDS
TTGTTCATGTCAAGGTTACA+GGG 0.556666 3_2:+85767754 Msa0433380:CDS
AGACCGAAGAAACATATGTA+TGG 0.556851 3_2:+85768404 Msa0433380:CDS
TGCTTCTTAGAGTTACAGAA+AGG 0.559728 3_2:+85769034 Msa0433380:CDS
GAGCGGTTGTTCTGGTGTGA+CGG 0.561057 3_2:+85768229 Msa0433380:CDS
GCTAACCCCAGTGGTACTCC+TGG 0.561368 3_2:+85769567 Msa0433380:CDS
GTCCCAATAGAGAGATCCAT+TGG 0.565136 3_2:-85769304 None:intergenic
GTTTCAAAATACTGTGGTGA+TGG 0.565444 3_2:+85769087 Msa0433380:CDS
AGAAATGGACGGACGTTCAG+AGG 0.566572 3_2:+85767283 None:intergenic
TCGTAAGGGGCAAGTGGTGA+GGG 0.567327 3_2:+85767697 Msa0433380:CDS
ACGCTCAATTTCAGCTATGT+CGG 0.568884 3_2:-85767978 None:intergenic
AAAATCAGGAATCCCAATGT+TGG 0.569033 3_2:-85768578 None:intergenic
ATCCGTGGTAGTTATGCCAA+TGG 0.569518 3_2:+85769288 Msa0433380:CDS
TTCGTAAGGGGCAAGTGGTG+AGG 0.571006 3_2:+85767696 Msa0433380:CDS
TAGCCTTCGATGCAACCTAC+CGG 0.576441 3_2:+85768290 Msa0433380:CDS
TTCAGTTCGTAAGGGGCAAG+TGG 0.578338 3_2:+85767691 Msa0433380:CDS
CCTTTGTCAGTTATAACAGA+TGG 0.578591 3_2:+85768466 Msa0433380:CDS
TGATATAATGAAGATTGACC+TGG 0.579924 3_2:+85767574 Msa0433380:CDS
ATTCCTTCGTCAGTTGACAT+TGG 0.580868 3_2:-85769693 None:intergenic
AGAAAGGCAAGAAATGTCCA+TGG 0.584202 3_2:+85769050 Msa0433380:CDS
TGTGTAAGAACAAAGGGCTG+TGG 0.586971 3_2:+85769543 Msa0433380:CDS
CGAGAATGCTGAGAATGTGT+TGG 0.587048 3_2:+85769512 Msa0433380:CDS
GAAAGGCAAGAAATGTCCAT+GGG 0.588349 3_2:+85769051 Msa0433380:CDS
CAAGTGGTGAGGGATCGAAA+TGG 0.589736 3_2:+85767707 Msa0433380:CDS
ACATTGATGCGACTGATGGA+AGG 0.591550 3_2:-85769654 None:intergenic
ACTGTGGTGATGGTAGGGTT+TGG 0.595759 3_2:+85769097 Msa0433380:CDS
TCCACAATGTGTAAGAACAA+AGG 0.597614 3_2:+85769536 Msa0433380:CDS
CCAAATGTGTAAAGTTGTTG+CGG 0.598797 3_2:+85769359 Msa0433380:CDS
CGTGTTGTCGAATATCTTAG+CGG 0.605074 3_2:+85769414 Msa0433380:CDS
TGGGCCACCGCTTACATCAG+AGG 0.605873 3_2:+85768736 Msa0433380:CDS
TTTGCTAAAGATTCAATCCG+TGG 0.606851 3_2:+85769273 Msa0433380:CDS
AACCGTGAAAATAAACCCCA+TGG 0.607032 3_2:-85769067 None:intergenic
TGTACGAAAAGAAGAAGATG+TGG 0.608246 3_2:+85768716 Msa0433380:CDS
CAAGGTTACAGGGAGGATAG+GGG 0.609406 3_2:+85767764 Msa0433380:CDS
CGCTAAGATATTCGACAACA+CGG 0.609882 3_2:-85769413 None:intergenic
AAACCAACAGTAAAACATGT+AGG 0.611187 3_2:-85767651 None:intergenic
AAGGTTACAGGGAGGATAGG+GGG 0.615842 3_2:+85767765 Msa0433380:CDS
AAAGCCCCATACATTTGGTA+CGG 0.620279 3_2:-85768022 None:intergenic
AAGAACCACCTCTCGTTGTG+AGG 0.620891 3_2:+85768777 Msa0433380:CDS
GCTGTATTGACGATGATAGG+AGG 0.621205 3_2:+85768203 Msa0433380:CDS
ACAAATTGCGAACAAAGCAA+TGG 0.627176 3_2:+85767467 Msa0433380:CDS
GATGCCAAGCACACAATCTG+TGG 0.628576 3_2:-85768537 None:intergenic
TGAGGCACTCCATAGCCACA+TGG 0.629459 3_2:+85768795 Msa0433380:CDS
CCATCTGTTATAACTGACAA+AGG 0.632179 3_2:-85768466 None:intergenic
TTCACGGTTTCAAAATACTG+TGG 0.634064 3_2:+85769081 Msa0433380:CDS
CAAGATACAGAAGCACAACA+AGG 0.638244 3_2:-85769203 None:intergenic
CGAAGGAATTCTCCAAGACG+AGG 0.638814 3_2:+85769707 Msa0433380:CDS
ATGGAGTGCCTCACAACGAG+AGG 0.641804 3_2:-85768785 None:intergenic
GCCTCGACAAAATATCCAAG+TGG 0.642964 3_2:-85767859 None:intergenic
ACCTTGACATGAACAAACAA+AGG 0.644270 3_2:-85767747 None:intergenic
TTGGTATTCAGAGAAATGGA+CGG 0.649153 3_2:+85767272 None:intergenic
TGCTGCTAATCAGTTTACGA+AGG 0.649732 3_2:+85768972 Msa0433380:CDS
GAGTGCCTCACAACGAGAGG+TGG 0.653972 3_2:-85768782 None:intergenic
AATCCTTTGTTAGAGCGCGA+TGG 0.654133 3_2:+85767311 Msa0433380:CDS
TTAGCAAACTTGGACCACCT+GGG 0.656483 3_2:-85769258 None:intergenic
GGGACTCGCAAATTGCTGCA+AGG 0.660465 3_2:+85769322 Msa0433380:CDS
GAAACTTCCTCTGATGTAAG+CGG 0.661052 3_2:-85768743 None:intergenic
ACTTCCTCTGATGTAAGCGG+TGG 0.667187 3_2:-85768740 None:intergenic
GAGGCACTCCATAGCCACAT+GGG 0.668287 3_2:+85768796 Msa0433380:CDS
TCTGTTATAACTGACAAAGG+AGG 0.671475 3_2:-85768463 None:intergenic
ATCCATTGGCATAACTACCA+CGG 0.671550 3_2:-85769290 None:intergenic
GTACGAAAAGAAGAAGATGT+GGG 0.675433 3_2:+85768717 Msa0433380:CDS
ACACCAATGTCAACTGACGA+AGG 0.680831 3_2:+85769690 Msa0433380:CDS
GAGGATGCGTACAACACCGA+GGG 0.685934 3_2:+85769726 Msa0433380:CDS
ATGTTAGGAGGTACTCTGTG+TGG 0.688101 3_2:+85767923 Msa0433380:CDS
ACGATGATAGGAGGCTTGAG+CGG 0.692756 3_2:+85768212 Msa0433380:CDS
GGCTGTGGAGCTAACCCCAG+TGG 0.693658 3_2:+85769558 Msa0433380:CDS
AAGACCGTACCAAATGTATG+GGG 0.707217 3_2:+85768018 Msa0433380:CDS
TTCATGTCAAGGTTACAGGG+AGG 0.709283 3_2:+85767757 Msa0433380:CDS
ACAACAAGGATATGATCACA+CGG 0.713301 3_2:-85769189 None:intergenic
AATGCACGTATTGTCCCATG+TGG 0.722187 3_2:-85768810 None:intergenic
CGAGGATGCGTACAACACCG+AGG 0.735213 3_2:+85769725 Msa0433380:CDS
AAAGGCAAGAAATGTCCATG+GGG 0.742239 3_2:+85769052 Msa0433380:CDS
GTCTACCAGGAGTACCACTG+GGG 0.788532 3_2:-85769572 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAAATACTTGTGATTTT+AGG + chr3_2:85769798-85769817 Msa0433380:intron 15.0%
!!! ATGTGAAATTTGAAATTGAA+TGG + chr3_2:85767364-85767383 Msa0433380:intron 20.0%
!!! TTTTAAATTAACTTAGCATG+TGG + chr3_2:85767389-85767408 Msa0433380:intron 20.0%
!!! CTAAAAGAAAATTTTCTTAC+AGG + chr3_2:85767412-85767431 Msa0433380:intron 20.0%
!!! ACCATATCTTTTATCATAAT+CGG - chr3_2:85767554-85767573 None:intergenic 20.0%
!! AATGAAAAATGCCATTAAAA+AGG + chr3_2:85768498-85768517 Msa0433380:CDS 20.0%
!! TTAACAAATTTGAAGATTTG+TGG + chr3_2:85768641-85768660 Msa0433380:CDS 20.0%
!!! CAAGTATTTTTAATGTTGTA+GGG - chr3_2:85769791-85769810 None:intergenic 20.0%
!!! ACAAGTATTTTTAATGTTGT+AGG - chr3_2:85769792-85769811 None:intergenic 20.0%
!!! TACTCAAATTTTTACGTATA+TGG + chr3_2:85769867-85769886 Msa0433380:CDS 20.0%
! TCCGATTATGATAAAAGATA+TGG + chr3_2:85767550-85767569 Msa0433380:CDS 25.0%
! CAAAAAATGAAACAAGATGT+GGG + chr3_2:85767816-85767835 Msa0433380:CDS 25.0%
! TAAAAAAGATTTGTACAACC+AGG + chr3_2:85768084-85768103 Msa0433380:CDS 25.0%
! TTCAGATAAGACATAAAATC+AGG - chr3_2:85768595-85768614 None:intergenic 25.0%
! TTATCTGAAAAAATGCATGT+TGG + chr3_2:85768606-85768625 Msa0433380:CDS 25.0%
!!! AGAGGTGTTTAACATTTTTT+CGG + chr3_2:85768869-85768888 Msa0433380:CDS 25.0%
!!! TTTAACATTTTTTCGGTTCA+GGG + chr3_2:85768876-85768895 Msa0433380:CDS 25.0%
! TTTGATTACCAATCCAATTA+CGG + chr3_2:85768907-85768926 Msa0433380:CDS 25.0%
!! TTAATCGGCTTAATTTGAAA+AGG + chr3_2:85769442-85769461 Msa0433380:CDS 25.0%
TGATATAATGAAGATTGACC+TGG + chr3_2:85767574-85767593 Msa0433380:CDS 30.0%
AAACCAACAGTAAAACATGT+AGG - chr3_2:85767654-85767673 None:intergenic 30.0%
!!! CCACATCTTGTTTCATTTTT+TGG - chr3_2:85767818-85767837 None:intergenic 30.0%
CCAAAAAATGAAACAAGATG+TGG + chr3_2:85767815-85767834 Msa0433380:CDS 30.0%
CGTATGAACTATGAGATATT+TGG + chr3_2:85768259-85768278 Msa0433380:CDS 30.0%
!!! CAATTTTTGAGTGCAATGAA+TGG + chr3_2:85768436-85768455 Msa0433380:CDS 30.0%
! TAATGGCATTTTTCATTGCA+AGG - chr3_2:85768495-85768514 None:intergenic 30.0%
! TGCAGGAAAAACCTTTTTAA+TGG - chr3_2:85768512-85768531 None:intergenic 30.0%
GAAAAAATGTTAAACACCTC+TGG - chr3_2:85768870-85768889 None:intergenic 30.0%
!!! GTTTAACATTTTTTCGGTTC+AGG + chr3_2:85768875-85768894 Msa0433380:CDS 30.0%
TGATGATCTTCCAAAATGTT+TGG + chr3_2:85769230-85769249 Msa0433380:CDS 30.0%
GATTGAATCTTTAGCAAACT+TGG - chr3_2:85769271-85769290 None:intergenic 30.0%
ATCTTAGCGGTGAAATTAAT+CGG + chr3_2:85769427-85769446 Msa0433380:CDS 30.0%
ACAAATTGCGAACAAAGCAA+TGG + chr3_2:85767467-85767486 Msa0433380:CDS 35.0%
GGAAGTTCAAATTCAGTTGA+AGG + chr3_2:85767500-85767519 Msa0433380:CDS 35.0%
TTCAAATTCAGTTGAAGGCT+TGG + chr3_2:85767505-85767524 Msa0433380:CDS 35.0%
! TTGCCTACATGTTTTACTGT+TGG + chr3_2:85767648-85767667 Msa0433380:CDS 35.0%
! TCAGGATTTTCAGTTCGTAA+GGG + chr3_2:85767683-85767702 Msa0433380:CDS 35.0%
! ACCTTTGTTTGTTCATGTCA+AGG + chr3_2:85767746-85767765 Msa0433380:CDS 35.0%
ACCTTGACATGAACAAACAA+AGG - chr3_2:85767750-85767769 None:intergenic 35.0%
TTTGTTCATGTCAAGGTTAC+AGG + chr3_2:85767753-85767772 Msa0433380:CDS 35.0%
TTGTTCATGTCAAGGTTACA+GGG + chr3_2:85767754-85767773 Msa0433380:CDS 35.0%
GATCACAATCATGCTATGTT+AGG + chr3_2:85767908-85767927 Msa0433380:CDS 35.0%
!! ACACTCATTTTTCTATACGC+TGG - chr3_2:85767956-85767975 None:intergenic 35.0%
ATAAGACCGTACCAAATGTA+TGG + chr3_2:85768016-85768035 Msa0433380:CDS 35.0%
TAAGACCGTACCAAATGTAT+GGG + chr3_2:85768017-85768036 Msa0433380:CDS 35.0%
AAACAATGATCTACGTTGCT+TGG - chr3_2:85768113-85768132 None:intergenic 35.0%
! TCATTGTTTTCTGATGCTTG+TGG + chr3_2:85768124-85768143 Msa0433380:CDS 35.0%
! CAGCTTTTCACAAACATTAG+AGG - chr3_2:85768187-85768206 None:intergenic 35.0%
! AAAGCTGTATTGACGATGAT+AGG + chr3_2:85768200-85768219 Msa0433380:CDS 35.0%
TATACCAGTCGCAAAAACAA+TGG - chr3_2:85768374-85768393 None:intergenic 35.0%
AGACCGAAGAAACATATGTA+TGG + chr3_2:85768404-85768423 Msa0433380:CDS 35.0%
CAGCCATACATATGTTTCTT+CGG - chr3_2:85768410-85768429 None:intergenic 35.0%
AGAAACATATGTATGGCTGT+TGG + chr3_2:85768411-85768430 Msa0433380:CDS 35.0%
TCTGTTATAACTGACAAAGG+AGG - chr3_2:85768466-85768485 None:intergenic 35.0%
CCATCTGTTATAACTGACAA+AGG - chr3_2:85768469-85768488 None:intergenic 35.0%
CCTTTGTCAGTTATAACAGA+TGG + chr3_2:85768466-85768485 Msa0433380:CDS 35.0%
AAAATCAGGAATCCCAATGT+TGG - chr3_2:85768581-85768600 None:intergenic 35.0%
TCAGAGATGGTTCAAAAGTT+TGG + chr3_2:85768664-85768683 Msa0433380:CDS 35.0%
CAGAGATGGTTCAAAAGTTT+GGG + chr3_2:85768665-85768684 Msa0433380:CDS 35.0%
TGTACGAAAAGAAGAAGATG+TGG + chr3_2:85768716-85768735 Msa0433380:CDS 35.0%
GTACGAAAAGAAGAAGATGT+GGG + chr3_2:85768717-85768736 Msa0433380:CDS 35.0%
TTTCTCTAATGACCGTAAAC+TGG - chr3_2:85768950-85768969 None:intergenic 35.0%
TGCTTCTTAGAGTTACAGAA+AGG + chr3_2:85769034-85769053 Msa0433380:CDS 35.0%
TTCACGGTTTCAAAATACTG+TGG + chr3_2:85769081-85769100 Msa0433380:CDS 35.0%
GTTTCAAAATACTGTGGTGA+TGG + chr3_2:85769087-85769106 Msa0433380:CDS 35.0%
!! AAAATACTGTGGTGATGGTA+GGG + chr3_2:85769092-85769111 Msa0433380:CDS 35.0%
CACGAGCATTTCAAAATAAC+TGG - chr3_2:85769144-85769163 None:intergenic 35.0%
ACAACAAGGATATGATCACA+CGG - chr3_2:85769192-85769211 None:intergenic 35.0%
TTTGCTAAAGATTCAATCCG+TGG + chr3_2:85769273-85769292 Msa0433380:CDS 35.0%
CCAAATGTGTAAAGTTGTTG+CGG + chr3_2:85769359-85769378 Msa0433380:CDS 35.0%
TCCACAATGTGTAAGAACAA+AGG + chr3_2:85769536-85769555 Msa0433380:CDS 35.0%
CCACAATGTGTAAGAACAAA+GGG + chr3_2:85769537-85769556 Msa0433380:CDS 35.0%
TTCACTTACATTGTAACCCT+CGG - chr3_2:85769745-85769764 None:intergenic 35.0%
!!! CAGGATTTTGAAGCTGAAAG+TGG + chr3_2:85767431-85767450 Msa0433380:intron 40.0%
!!! GATTTTGAAGCTGAAAGTGG+AGG + chr3_2:85767434-85767453 Msa0433380:CDS 40.0%
CAAAGCAATGGAGATGTCAA+TGG + chr3_2:85767479-85767498 Msa0433380:CDS 40.0%
AAATTCAGTTGAAGGCTTGG+AGG + chr3_2:85767508-85767527 Msa0433380:CDS 40.0%
! TGACCTGGAAAACTTTTGTG+TGG + chr3_2:85767589-85767608 Msa0433380:CDS 40.0%
! AAACTTTTGTGTGGCTGATG+TGG + chr3_2:85767598-85767617 Msa0433380:CDS 40.0%
AACTGAAAATCCTGACGTTC+TGG - chr3_2:85767678-85767697 None:intergenic 40.0%
! GTCAGGATTTTCAGTTCGTA+AGG + chr3_2:85767682-85767701 Msa0433380:CDS 40.0%
! CAGGATTTTCAGTTCGTAAG+GGG + chr3_2:85767684-85767703 Msa0433380:CDS 40.0%
ATGAACAAACAAAGGTCTGC+TGG - chr3_2:85767742-85767761 None:intergenic 40.0%
!!! CATTTTTTGGCTCACGCTTT+CGG - chr3_2:85767805-85767824 None:intergenic 40.0%
! TGCAAAATTTCGAGTCCACT+TGG + chr3_2:85767844-85767863 Msa0433380:CDS 40.0%
! TCCACTTGGATATTTTGTCG+AGG + chr3_2:85767858-85767877 Msa0433380:CDS 40.0%
! TGGATATTTTGTCGAGGCAT+TGG + chr3_2:85767864-85767883 Msa0433380:CDS 40.0%
CACAATCATGCTATGTTAGG+AGG + chr3_2:85767911-85767930 Msa0433380:CDS 40.0%
ACGCTCAATTTCAGCTATGT+CGG - chr3_2:85767981-85768000 None:intergenic 40.0%
AAGACCGTACCAAATGTATG+GGG + chr3_2:85768018-85768037 Msa0433380:CDS 40.0%
AAAGCCCCATACATTTGGTA+CGG - chr3_2:85768025-85768044 None:intergenic 40.0%
GACAGTTGTACTTGTTCTTC+CGG - chr3_2:85768312-85768331 None:intergenic 40.0%
ACACCTGAGAACACAACAAA+CGG - chr3_2:85768334-85768353 None:intergenic 40.0%
TGAAGATTTGTGGTCAGAGA+TGG + chr3_2:85768651-85768670 Msa0433380:CDS 40.0%
GATGGTTCAAAAGTTTGGGT+TGG + chr3_2:85768669-85768688 Msa0433380:CDS 40.0%
!! TTGGGTTGGAAAACAACAGT+TGG + chr3_2:85768683-85768702 Msa0433380:CDS 40.0%
GAAACTTCCTCTGATGTAAG+CGG - chr3_2:85768746-85768765 None:intergenic 40.0%
ATCAGAGGAAGTTTCTTTGC+TGG + chr3_2:85768751-85768770 Msa0433380:CDS 40.0%
! ATTTTGTGCAACAGTTCCAG+AGG + chr3_2:85768851-85768870 Msa0433380:CDS 40.0%
TGCTGCTAATCAGTTTACGA+AGG + chr3_2:85768972-85768991 Msa0433380:CDS 40.0%
! AAGCAGTGATCTTTTCAGCA+CGG - chr3_2:85769019-85769038 None:intergenic 40.0%
AGAAAGGCAAGAAATGTCCA+TGG + chr3_2:85769050-85769069 Msa0433380:CDS 40.0%
GAAAGGCAAGAAATGTCCAT+GGG + chr3_2:85769051-85769070 Msa0433380:CDS 40.0%
AAAGGCAAGAAATGTCCATG+GGG + chr3_2:85769052-85769071 Msa0433380:CDS 40.0%
!! GTCCATGGGGTTTATTTTCA+CGG + chr3_2:85769065-85769084 Msa0433380:CDS 40.0%
AACCGTGAAAATAAACCCCA+TGG - chr3_2:85769070-85769089 None:intergenic 40.0%
!! CAAAATACTGTGGTGATGGT+AGG + chr3_2:85769091-85769110 Msa0433380:CDS 40.0%
GAAATGCTCGTGTCTTAGAA+TGG + chr3_2:85769152-85769171 Msa0433380:CDS 40.0%
TGTCTTAGAATGGAATCGCT+TGG + chr3_2:85769162-85769181 Msa0433380:CDS 40.0%
! CAAGATACAGAAGCACAACA+AGG - chr3_2:85769206-85769225 None:intergenic 40.0%
! CTGGGCAAAACCAAACATTT+TGG - chr3_2:85769243-85769262 None:intergenic 40.0%
!!! CAAAATGTTTGGTTTTGCCC+AGG + chr3_2:85769241-85769260 Msa0433380:CDS 40.0%
ATCCATTGGCATAACTACCA+CGG - chr3_2:85769293-85769312 None:intergenic 40.0%
ATGCCAATGGATCTCTCTAT+TGG + chr3_2:85769301-85769320 Msa0433380:CDS 40.0%
TGCCAATGGATCTCTCTATT+GGG + chr3_2:85769302-85769321 Msa0433380:CDS 40.0%
! CAAATTGCTGCAAGGTATTC+TGG + chr3_2:85769330-85769349 Msa0433380:CDS 40.0%
CCGCAACAACTTTACACATT+TGG - chr3_2:85769362-85769381 None:intergenic 40.0%
CGCTAAGATATTCGACAACA+CGG - chr3_2:85769416-85769435 None:intergenic 40.0%
CGTGTTGTCGAATATCTTAG+CGG + chr3_2:85769414-85769433 Msa0433380:CDS 40.0%
CCCTTTGTTCTTACACATTG+TGG - chr3_2:85769540-85769559 None:intergenic 40.0%
ATTCCTTCGTCAGTTGACAT+TGG - chr3_2:85769696-85769715 None:intergenic 40.0%
!! CTCGTTCTTACTTGTTGTCT+AGG + chr3_2:85769840-85769859 Msa0433380:intron 40.0%
AATCCTTTGTTAGAGCGCGA+TGG + chr3_2:85767311-85767330 Msa0433380:CDS 45.0%
! CAGCCACACAAAAGTTTTCC+AGG - chr3_2:85767595-85767614 None:intergenic 45.0%
TTCATGTCAAGGTTACAGGG+AGG + chr3_2:85767757-85767776 Msa0433380:CDS 45.0%
TCAAGGTTACAGGGAGGATA+GGG + chr3_2:85767763-85767782 Msa0433380:CDS 45.0%
GCCTCGACAAAATATCCAAG+TGG - chr3_2:85767862-85767881 None:intergenic 45.0%
!! ATGTTAGGAGGTACTCTGTG+TGG + chr3_2:85767923-85767942 Msa0433380:CDS 45.0%
ATTGAGCGTAGTCGAAAAGC+TGG + chr3_2:85767992-85768011 Msa0433380:CDS 45.0%
GTACCAAATGTATGGGGCTT+TGG + chr3_2:85768024-85768043 Msa0433380:CDS 45.0%
!! TGCTTCTGGGGGTTTTCATA+AGG + chr3_2:85768051-85768070 Msa0433380:CDS 45.0%
! TCTGGGGGTTTTCATAAGGT+AGG + chr3_2:85768055-85768074 Msa0433380:CDS 45.0%
! GCTGTATTGACGATGATAGG+AGG + chr3_2:85768203-85768222 Msa0433380:CDS 45.0%
GTTGTACTTGTTCTTCCGGT+AGG - chr3_2:85768308-85768327 None:intergenic 45.0%
!! TGTCCGTTTGTTGTGTTCTC+AGG + chr3_2:85768328-85768347 Msa0433380:CDS 45.0%
!!! CAGACCATTGTTTTTGCGAC+TGG + chr3_2:85768367-85768386 Msa0433380:CDS 45.0%
TGTGTGCTTGGCATCTGTTA+AGG + chr3_2:85768545-85768564 Msa0433380:CDS 45.0%
AGGAATGCTTCCACCAACAT+TGG + chr3_2:85768565-85768584 Msa0433380:CDS 45.0%
GGAATGCTTCCACCAACATT+GGG + chr3_2:85768566-85768585 Msa0433380:CDS 45.0%
ATCAGGAATCCCAATGTTGG+TGG - chr3_2:85768578-85768597 None:intergenic 45.0%
AATGCACGTATTGTCCCATG+TGG - chr3_2:85768813-85768832 None:intergenic 45.0%
TGGGACAATACGTGCATTCT+CGG + chr3_2:85768815-85768834 Msa0433380:CDS 45.0%
CAGGAAGACCGTAATTGGAT+TGG - chr3_2:85768918-85768937 None:intergenic 45.0%
CATCACAGGAAGACCGTAAT+TGG - chr3_2:85768923-85768942 None:intergenic 45.0%
CTGTGATGCAGACCAGTTTA+CGG + chr3_2:85768935-85768954 Msa0433380:CDS 45.0%
!!! AATGTTTGGTTTTGCCCAGG+TGG + chr3_2:85769244-85769263 Msa0433380:CDS 45.0%
TTAGCAAACTTGGACCACCT+GGG - chr3_2:85769261-85769280 None:intergenic 45.0%
TTTAGCAAACTTGGACCACC+TGG - chr3_2:85769262-85769281 None:intergenic 45.0%
ATCCGTGGTAGTTATGCCAA+TGG + chr3_2:85769288-85769307 Msa0433380:CDS 45.0%
GTCCCAATAGAGAGATCCAT+TGG - chr3_2:85769307-85769326 None:intergenic 45.0%
GTGTAAAGTTGTTGCGGAGA+TGG + chr3_2:85769365-85769384 Msa0433380:CDS 45.0%
!! CTGTTTTGTGTCACTGGAAC+TGG - chr3_2:85769486-85769505 None:intergenic 45.0%
!!! TCTGTGCTGTTTTGTGTCAC+TGG - chr3_2:85769492-85769511 None:intergenic 45.0%
CGAGAATGCTGAGAATGTGT+TGG + chr3_2:85769512-85769531 Msa0433380:CDS 45.0%
TGTGTAAGAACAAAGGGCTG+TGG + chr3_2:85769543-85769562 Msa0433380:CDS 45.0%
ACACAAACTTGCAGCGTTTG+TGG + chr3_2:85769603-85769622 Msa0433380:CDS 45.0%
ACATTGATGCGACTGATGGA+AGG - chr3_2:85769657-85769676 None:intergenic 45.0%
TCCATCAGTCGCATCAATGT+TGG + chr3_2:85769657-85769676 Msa0433380:CDS 45.0%
CCATCAGTCGCATCAATGTT+GGG + chr3_2:85769658-85769677 Msa0433380:CDS 45.0%
ACACCAATGTCAACTGACGA+AGG + chr3_2:85769690-85769709 Msa0433380:CDS 45.0%
ACACCATCGCGCTCTAACAA+AGG - chr3_2:85767317-85767336 None:intergenic 50.0%
!! TGTTGGTTTGCCAGAACGTC+AGG + chr3_2:85767665-85767684 Msa0433380:CDS 50.0%
TTCAGTTCGTAAGGGGCAAG+TGG + chr3_2:85767691-85767710 Msa0433380:CDS 50.0%
CAAGTGGTGAGGGATCGAAA+TGG + chr3_2:85767707-85767726 Msa0433380:CDS 50.0%
GTCAAGGTTACAGGGAGGAT+AGG + chr3_2:85767762-85767781 Msa0433380:CDS 50.0%
CAAGGTTACAGGGAGGATAG+GGG + chr3_2:85767764-85767783 Msa0433380:CDS 50.0%
AAGGTTACAGGGAGGATAGG+GGG + chr3_2:85767765-85767784 Msa0433380:CDS 50.0%
GGAGGATAGGGGGTTAACAA+TGG + chr3_2:85767775-85767794 Msa0433380:CDS 50.0%
CTGCCAAAGCCCCATACATT+TGG - chr3_2:85768030-85768049 None:intergenic 50.0%
ATCTACGTTGCTTGGCAACC+TGG - chr3_2:85768105-85768124 None:intergenic 50.0%
ACGATGATAGGAGGCTTGAG+CGG + chr3_2:85768212-85768231 Msa0433380:CDS 50.0%
TAGCCTTCGATGCAACCTAC+CGG + chr3_2:85768290-85768309 Msa0433380:CDS 50.0%
GATGCCAAGCACACAATCTG+TGG - chr3_2:85768540-85768559 None:intergenic 50.0%
ACTTCCTCTGATGTAAGCGG+TGG - chr3_2:85768743-85768762 None:intergenic 50.0%
AAGAACCACCTCTCGTTGTG+AGG + chr3_2:85768777-85768796 Msa0433380:CDS 50.0%
CGTATTGTCCCATGTGGCTA+TGG - chr3_2:85768807-85768826 None:intergenic 50.0%
! CGTAAACTGGTCTGCATCAC+AGG - chr3_2:85768937-85768956 None:intergenic 50.0%
!! ACTGTGGTGATGGTAGGGTT+TGG + chr3_2:85769097-85769116 Msa0433380:CDS 50.0%
!! TGCAGCGTTTGTGGTGTCAT+AGG + chr3_2:85769612-85769631 Msa0433380:CDS 50.0%
CCCAACATTGATGCGACTGA+TGG - chr3_2:85769661-85769680 None:intergenic 50.0%
CGAAGGAATTCTCCAAGACG+AGG + chr3_2:85769707-85769726 Msa0433380:CDS 50.0%
TGTTGTACGCATCCTCGTCT+TGG - chr3_2:85769722-85769741 None:intergenic 50.0%
TTCGTAAGGGGCAAGTGGTG+AGG + chr3_2:85767696-85767715 Msa0433380:CDS 55.0%
TCGTAAGGGGCAAGTGGTGA+GGG + chr3_2:85767697-85767716 Msa0433380:CDS 55.0%
! GGGCTTTGGCAGATGCTTCT+GGG + chr3_2:85768038-85768057 Msa0433380:CDS 55.0%
! GGCTTTGGCAGATGCTTCTG+GGG + chr3_2:85768039-85768058 Msa0433380:CDS 55.0%
GCTTTGGCAGATGCTTCTGG+GGG + chr3_2:85768040-85768059 Msa0433380:CDS 55.0%
GAGCGGTTGTTCTGGTGTGA+CGG + chr3_2:85768229-85768248 Msa0433380:CDS 55.0%
CTTCCGGTAGGTTGCATCGA+AGG - chr3_2:85768296-85768315 None:intergenic 55.0%
CGCACCACAGATTGTGTGCT+TGG + chr3_2:85768533-85768552 Msa0433380:CDS 55.0%
! ATGGAGTGCCTCACAACGAG+AGG - chr3_2:85768788-85768807 None:intergenic 55.0%
! TGAGGCACTCCATAGCCACA+TGG + chr3_2:85768795-85768814 Msa0433380:CDS 55.0%
! GAGGCACTCCATAGCCACAT+GGG + chr3_2:85768796-85768815 Msa0433380:CDS 55.0%
GGGACTCGCAAATTGCTGCA+AGG + chr3_2:85769322-85769341 Msa0433380:CDS 55.0%
!! GTCTACCAGGAGTACCACTG+GGG - chr3_2:85769575-85769594 None:intergenic 55.0%
!! CGTCTACCAGGAGTACCACT+GGG - chr3_2:85769576-85769595 None:intergenic 55.0%
GAGGATGCGTACAACACCGA+GGG + chr3_2:85769726-85769745 Msa0433380:CDS 55.0%
! GGGGCTTTGGCAGATGCTTC+TGG + chr3_2:85768037-85768056 Msa0433380:CDS 60.0%
GGAGGCTTGAGCGGTTGTTC+TGG + chr3_2:85768221-85768240 Msa0433380:CDS 60.0%
CACAATCTGTGGTGCGCTGC+AGG - chr3_2:85768529-85768548 None:intergenic 60.0%
TGGGCCACCGCTTACATCAG+AGG + chr3_2:85768736-85768755 Msa0433380:CDS 60.0%
GAGTGCCTCACAACGAGAGG+TGG - chr3_2:85768785-85768804 None:intergenic 60.0%
GCTAACCCCAGTGGTACTCC+TGG + chr3_2:85769567-85769586 Msa0433380:CDS 60.0%
!! GCGTCTACCAGGAGTACCAC+TGG - chr3_2:85769577-85769596 None:intergenic 60.0%
TGTGTGCGTCTGCGTCTACC+AGG - chr3_2:85769588-85769607 None:intergenic 60.0%
CGAGGATGCGTACAACACCG+AGG + chr3_2:85769725-85769744 Msa0433380:CDS 60.0%
GGCTGTGGAGCTAACCCCAG+TGG + chr3_2:85769558-85769577 Msa0433380:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 85767287 85769900 85767287 ID=Msa0433380;Name=Msa0433380
chr3_2 mRNA 85767287 85769900 85767287 ID=Msa0433380-mRNA-1;Parent=Msa0433380;Name=Msa0433380-mRNA-1;_AED=0.49;_eAED=0.49;_QI=0|0.5|0|0.66|1|1|3|0|807
chr3_2 exon 85767287 85767349 85767287 ID=Msa0433380-mRNA-1:exon:24672;Parent=Msa0433380-mRNA-1
chr3_2 exon 85767434 85769755 85767434 ID=Msa0433380-mRNA-1:exon:24673;Parent=Msa0433380-mRNA-1
chr3_2 exon 85769862 85769900 85769862 ID=Msa0433380-mRNA-1:exon:24674;Parent=Msa0433380-mRNA-1
chr3_2 CDS 85767287 85767349 85767287 ID=Msa0433380-mRNA-1:cds;Parent=Msa0433380-mRNA-1
chr3_2 CDS 85767434 85769755 85767434 ID=Msa0433380-mRNA-1:cds;Parent=Msa0433380-mRNA-1
chr3_2 CDS 85769862 85769900 85769862 ID=Msa0433380-mRNA-1:cds;Parent=Msa0433380-mRNA-1
Gene Sequence

>Msa0433380

ATGGACGGACGTTCAGAGGCTGTGAATCCTTTGTTAGAGCGCGATGGTGTGAGAATTTCAAGAGATTTTGAAGCTGAAAGTGGAGGTAATTACAACACAAATTGCGAACAAAGCAATGGAGATGTCAATGGAAGTTCAAATTCAGTTGAAGGCTTGGAGGATGAAACTAATGAAGTCAATCCGATTATGATAAAAGATATGGTTGATATAATGAAGATTGACCTGGAAAACTTTTGTGTGGCTGATGTGGAAAGATATGAATTTGTTGCTTTAGATGTTGCCTACATGTTTTACTGTTGGTTTGCCAGAACGTCAGGATTTTCAGTTCGTAAGGGGCAAGTGGTGAGGGATCGAAATGGTGAAGTCGTCCAGCAGACCTTTGTTTGTTCATGTCAAGGTTACAGGGAGGATAGGGGGTTAACAATGGAAAACCGAAAGCGTGAGCCAAAAAATGAAACAAGATGTGGGTGTAATGCAAAATTTCGAGTCCACTTGGATATTTTGTCGAGGCATTGGTATGTTACTGTATTTGAATTTGATCACAATCATGCTATGTTAGGAGGTACTCTGTGTGGAATGTTGCCAGCGTATAGAAAAATGAGTGTAGCCGACATAGCTGAAATTGAGCGTAGTCGAAAAGCTGGTATAAGACCGTACCAAATGTATGGGGCTTTGGCAGATGCTTCTGGGGGTTTTCATAAGGTAGGATTTGTTAAAAAAGATTTGTACAACCAGGTTGCCAAGCAACGTAGATCATTGTTTTCTGATGCTTGTGGCGCAGTTAAGTATCTTCGAGATCTTTGCAAAGACGATCCTCTAATGTTTGTGAAAAGCTGTATTGACGATGATAGGAGGCTTGAGCGGTTGTTCTGGTGTGACGGTGAAAGTCGTATGAACTATGAGATATTTGGAGATGTTTTAGCCTTCGATGCAACCTACCGGAAGAACAAGTACAACTGTCCGTTTGTTGTGTTCTCAGGTGTTAATCATCATAATCAGACCATTGTTTTTGCGACTGGTATAGTAACGCGAGAGACCGAAGAAACATATGTATGGCTGTTGGAACAATTTTTGAGTGCAATGAATGGTAAACCTCCTTTGTCAGTTATAACAGATGGCGACCTTGCAATGAAAAATGCCATTAAAAAGGTTTTTCCTGCAGCGCACCACAGATTGTGTGCTTGGCATCTGTTAAGGAATGCTTCCACCAACATTGGGATTCCTGATTTTATGTCTTATCTGAAAAAATGCATGTTGGCTGACATTGAGATTAACAAATTTGAAGATTTGTGGTCAGAGATGGTTCAAAAGTTTGGGTTGGAAAACAACAGTTGGATCAATGAGATGTACGAAAAGAAGAAGATGTGGGCCACCGCTTACATCAGAGGAAGTTTCTTTGCTGGTATAAGAACCACCTCTCGTTGTGAGGCACTCCATAGCCACATGGGACAATACGTGCATTCTCGGATAAACATGACTGATTTTGTGCAACAGTTCCAGAGGTGTTTAACATTTTTTCGGTTCAGGGAAATTTTATTTGATTACCAATCCAATTACGGTCTTCCTGTGATGCAGACCAGTTTACGGTCATTAGAGAAATCTGCTGCTAATCAGTTTACGAAGGCTATCTTTCTACTGTTTCGTACCGTGCTGAAAAGATCACTGCTTCTTAGAGTTACAGAAAGGCAAGAAATGTCCATGGGGTTTATTTTCACGGTTTCAAAATACTGTGGTGATGGTAGGGTTTGGCATGTGACATTCTGTGAAGAACCAGTTATTTTGAAATGCTCGTGTCTTAGAATGGAATCGCTTGGTTTGCCGTGTGATCATATCCTTGTTGTGCTTCTGTATCTTGATTTTGATGATCTTCCAAAATGTTTGGTTTTGCCCAGGTGGTCCAAGTTTGCTAAAGATTCAATCCGTGGTAGTTATGCCAATGGATCTCTCTATTGGGACTCGCAAATTGCTGCAAGGTATTCTGGCATAGTCCAAATGTGTAAAGTTGTTGCGGAGATGGTTTACGAAGATGAAGATGAGTACAACCGTGTTGTCGAATATCTTAGCGGTGAAATTAATCGGCTTAATTTGAAAAGGAACAACGCAATTTGTGAACCAGTTCCAGTGACACAAAACAGCACAGACGAGAATGCTGAGAATGTGTTGGATCCACAATGTGTAAGAACAAAGGGCTGTGGAGCTAACCCCAGTGGTACTCCTGGTAGACGCAGACGCACACAAACTTGCAGCGTTTGTGGTGTCATAGGTCACAATAGACGTTGTTGTCCTTCCATCAGTCGCATCAATGTTGGGCAGACACAAACACCAATGTCAACTGACGAAGGAATTCTCCAAGACGAGGATGCGTACAACACCGAGGGTTACAATGTGTATACTCAAATTTTTACGTATATGGTTAATCATTAA
Protein sequence

>Msa0433380

MDGRSEAVNPLLERDGVRISRDFEAESGGNYNTNCEQSNGDVNGSSNSVEGLEDETNEVNPIMIKDMVDIMKIDLENFCVADVERYEFVALDVAYMFYCWFARTSGFSVRKGQVVRDRNGEVVQQTFVCSCQGYREDRGLTMENRKREPKNETRCGCNAKFRVHLDILSRHWYVTVFEFDHNHAMLGGTLCGMLPAYRKMSVADIAEIERSRKAGIRPYQMYGALADASGGFHKVGFVKKDLYNQVAKQRRSLFSDACGAVKYLRDLCKDDPLMFVKSCIDDDRRLERLFWCDGESRMNYEIFGDVLAFDATYRKNKYNCPFVVFSGVNHHNQTIVFATGIVTRETEETYVWLLEQFLSAMNGKPPLSVITDGDLAMKNAIKKVFPAAHHRLCAWHLLRNASTNIGIPDFMSYLKKCMLADIEINKFEDLWSEMVQKFGLENNSWINEMYEKKKMWATAYIRGSFFAGIRTTSRCEALHSHMGQYVHSRINMTDFVQQFQRCLTFFRFREILFDYQSNYGLPVMQTSLRSLEKSAANQFTKAIFLLFRTVLKRSLLLRVTERQEMSMGFIFTVSKYCGDGRVWHVTFCEEPVILKCSCLRMESLGLPCDHILVVLLYLDFDDLPKCLVLPRWSKFAKDSIRGSYANGSLYWDSQIAARYSGIVQMCKVVAEMVYEDEDEYNRVVEYLSGEINRLNLKRNNAICEPVPVTQNSTDENAENVLDPQCVRTKGCGANPSGTPGRRRRTQTCSVCGVIGHNRRCCPSISRINVGQTQTPMSTDEGILQDEDAYNTEGYNVYTQIFTYMVNH*