AlfalfaGEDB | Msa0433860

M. sativa cultivar zhongmu-4 / Msa0433860

KEGG: K02218|K08960
GO: -
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0433860	XP_013462017.1	98.605	430	6	0	1	430	1	430	0.0	887

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0433860	sp\|Q93Z18\|CKL3_ARATH	61.085	424	148	5	1	420	1	411	0.0	525

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0433860	A0A072V2G9	98.605	430	6	0	1	430	1	430	0.0	887

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0433860	MtrunA17_Chr3g0140071	98.605	430	6	0	1	430	1	430	0.0	887
Msa0433860	MtrunA17_Chr1g0146151	62.383	428	154	2	1	428	1	421	0.0	548
Msa0433860	MtrunA17_Chr6g0486611	64.373	407	133	5	1	404	1	398	0.0	537
Msa0433860	MtrunA17_Chr8g0390211	60.970	433	157	5	1	430	1	424	0.0	525
Msa0433860	MtrunA17_Chr4g0071031	65.789	342	114	2	1	341	1	340	3.54e-171	487
Msa0433860	MtrunA17_Chr2g0329981	66.082	342	109	2	1	335	1	342	8.67e-171	487
Msa0433860	MtrunA17_Chr1g0183631	68.553	318	100	0	1	318	1	318	2.31e-168	480
Msa0433860	MtrunA17_Chr7g0261501	66.873	323	107	0	1	323	1	323	4.51e-166	474
Msa0433860	MtrunA17_Chr1g0166821	69.381	307	94	0	1	307	2	308	1.95e-165	473
Msa0433860	MtrunA17_Chr8g0342821	65.964	332	106	3	1	331	1	326	4.88e-165	472

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0433860	AT4G28880.3	61.085	424	148	5	1	420	1	411	0.0	525
Msa0433860	AT4G28880.2	61.085	424	148	5	1	420	1	411	0.0	525
Msa0433860	AT4G28880.1	61.085	424	148	5	1	420	1	411	0.0	525
Msa0433860	AT4G28880.4	61.085	424	148	5	1	420	1	411	0.0	525
Msa0433860	AT4G28860.1	61.353	414	147	4	1	413	1	402	0.0	521
Msa0433860	AT4G28860.2	72.956	318	86	0	1	318	1	318	0.0	514
Msa0433860	AT4G26100.1	56.659	413	145	6	1	403	1	389	1.40e-167	478
Msa0433860	AT5G57015.1	65.644	326	110	1	1	324	1	326	6.48e-165	471
Msa0433860	AT1G72710.1	65.549	328	107	2	1	323	1	327	3.06e-164	470
Msa0433860	AT5G44100.1	71.380	297	85	0	1	297	1	297	2.03e-163	469

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Find 149 sgRNAs with CRISPR-Local

Find 412 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCGGAAGCGGTTCATT+TGG	0.355035	3_2:-86467313	Msa0433860:CDS
AAAATGTCTCCAAGCCTGAA+AGG	0.617565	3_2:-86462290	Msa0433860:CDS
AAACCAGATAACTTCCTAAT+GGG	0.430261	3_2:-86466073	Msa0433860:CDS
AAAGTAAGACGCAAACTCCA+CGG	0.599632	3_2:+86464183	None:intergenic
AAATTATACAGTCTTCTCCA+AGG	0.638640	3_2:-86466630	Msa0433860:CDS
AACAACATGGAGTGGGTCGT+TGG	0.562685	3_2:-86467358	Msa0433860:exon
AACATGGAGTGGGTCGTTGG+CGG	0.534619	3_2:-86467355	Msa0433860:CDS
AAGAAGAGAATGAATATAAA+AGG	0.289046	3_2:+86467530	None:intergenic
AAGGAGACAAAAGCAATCAT+CGG	0.624317	3_2:-86463533	Msa0433860:intron
AAGTAAGACGCAAACTCCAC+GGG	0.604948	3_2:+86464184	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAGACAAAGATAGATAGAAA+TGG	+	chr3_2:86461663-86461682	None:intergenic	30.0%
TGAAAATGAAAAAGAGGGTT+TGG	+	chr3_2:86461688-86461707	None:intergenic	30.0%
GTGATGAATGATAAAGAGAT+GGG	+	chr3_2:86462032-86462051	None:intergenic	30.0%
TGATCTATTCCTTAGATTAC+CGG	+	chr3_2:86462105-86462124	None:intergenic	30.0%
AAAACTTATACTTGCTTGCT+AGG	-	chr3_2:86462333-86462352	Msa0433860:CDS	30.0%
AGTTGTTGAGCAATTGAATA+TGG	+	chr3_2:86462391-86462410	None:intergenic	30.0%
TTGGAGAAGACTGTATAATT+TGG	+	chr3_2:86462508-86462527	None:intergenic	30.0%
AAATTATACAGTCTTCTCCA+AGG	-	chr3_2:86462507-86462526	Msa0433860:intron	30.0%
TGATGGAGATCATAATATTC+TGG	-	chr3_2:86462662-86462681	Msa0433860:CDS	30.0%
ATCTAAAAGTTACCTCTTGT+AGG	-	chr3_2:86462912-86462931	Msa0433860:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	86461467	86467692	86461467	ID=Msa0433860;Name=Msa0433860
chr3_2	mRNA	86461467	86467692	86461467	ID=Msa0433860-mRNA-1;Parent=Msa0433860;Name=Msa0433860-mRNA-1;_AED=0.10;_eAED=0.10;_QI=318\|1\|1\|1\|0.86\|0.81\|16\|538\|430
chr3_2	exon	86461467	86461770	86461467	ID=Msa0433860-mRNA-1:exon:24986;Parent=Msa0433860-mRNA-1
chr3_2	exon	86461807	86462037	86461807	ID=Msa0433860-mRNA-1:exon:24985;Parent=Msa0433860-mRNA-1
chr3_2	exon	86462188	86462364	86462188	ID=Msa0433860-mRNA-1:exon:24984;Parent=Msa0433860-mRNA-1
chr3_2	exon	86462567	86462694	86462567	ID=Msa0433860-mRNA-1:exon:24983;Parent=Msa0433860-mRNA-1
chr3_2	exon	86463321	86463387	86463321	ID=Msa0433860-mRNA-1:exon:24982;Parent=Msa0433860-mRNA-1
chr3_2	exon	86463534	86463616	86463534	ID=Msa0433860-mRNA-1:exon:24981;Parent=Msa0433860-mRNA-1
chr3_2	exon	86464098	86464224	86464098	ID=Msa0433860-mRNA-1:exon:24980;Parent=Msa0433860-mRNA-1
chr3_2	exon	86464642	86464726	86464642	ID=Msa0433860-mRNA-1:exon:24979;Parent=Msa0433860-mRNA-1
chr3_2	exon	86464854	86464917	86464854	ID=Msa0433860-mRNA-1:exon:24978;Parent=Msa0433860-mRNA-1
chr3_2	exon	86464999	86465060	86464999	ID=Msa0433860-mRNA-1:exon:24977;Parent=Msa0433860-mRNA-1
chr3_2	exon	86465858	86465928	86465858	ID=Msa0433860-mRNA-1:exon:24976;Parent=Msa0433860-mRNA-1
chr3_2	exon	86466051	86466146	86466051	ID=Msa0433860-mRNA-1:exon:24975;Parent=Msa0433860-mRNA-1
chr3_2	exon	86466380	86466528	86466380	ID=Msa0433860-mRNA-1:exon:24974;Parent=Msa0433860-mRNA-1
chr3_2	exon	86466625	86466694	86466625	ID=Msa0433860-mRNA-1:exon:24973;Parent=Msa0433860-mRNA-1
chr3_2	exon	86467174	86467214	86467174	ID=Msa0433860-mRNA-1:exon:24972;Parent=Msa0433860-mRNA-1
chr3_2	exon	86467299	86467692	86467299	ID=Msa0433860-mRNA-1:exon:24971;Parent=Msa0433860-mRNA-1
chr3_2	five_prime_UTR	86467375	86467692	86467375	ID=Msa0433860-mRNA-1:five_prime_utr;Parent=Msa0433860-mRNA-1
chr3_2	CDS	86467299	86467374	86467299	ID=Msa0433860-mRNA-1:cds;Parent=Msa0433860-mRNA-1
chr3_2	CDS	86467174	86467214	86467174	ID=Msa0433860-mRNA-1:cds;Parent=Msa0433860-mRNA-1
chr3_2	CDS	86466625	86466694	86466625	ID=Msa0433860-mRNA-1:cds;Parent=Msa0433860-mRNA-1
chr3_2	CDS	86466380	86466528	86466380	ID=Msa0433860-mRNA-1:cds;Parent=Msa0433860-mRNA-1
chr3_2	CDS	86466051	86466146	86466051	ID=Msa0433860-mRNA-1:cds;Parent=Msa0433860-mRNA-1
chr3_2	CDS	86465858	86465928	86465858	ID=Msa0433860-mRNA-1:cds;Parent=Msa0433860-mRNA-1
chr3_2	CDS	86464999	86465060	86464999	ID=Msa0433860-mRNA-1:cds;Parent=Msa0433860-mRNA-1
chr3_2	CDS	86464854	86464917	86464854	ID=Msa0433860-mRNA-1:cds;Parent=Msa0433860-mRNA-1
chr3_2	CDS	86464642	86464726	86464642	ID=Msa0433860-mRNA-1:cds;Parent=Msa0433860-mRNA-1
chr3_2	CDS	86464098	86464224	86464098	ID=Msa0433860-mRNA-1:cds;Parent=Msa0433860-mRNA-1
chr3_2	CDS	86463534	86463616	86463534	ID=Msa0433860-mRNA-1:cds;Parent=Msa0433860-mRNA-1
chr3_2	CDS	86463321	86463387	86463321	ID=Msa0433860-mRNA-1:cds;Parent=Msa0433860-mRNA-1
chr3_2	CDS	86462567	86462694	86462567	ID=Msa0433860-mRNA-1:cds;Parent=Msa0433860-mRNA-1
chr3_2	CDS	86462191	86462364	86462191	ID=Msa0433860-mRNA-1:cds;Parent=Msa0433860-mRNA-1
chr3_2	three_prime_UTR	86462188	86462190	86462188	ID=Msa0433860-mRNA-1:three_prime_utr;Parent=Msa0433860-mRNA-1
chr3_2	three_prime_UTR	86461807	86462037	86461807	ID=Msa0433860-mRNA-1:three_prime_utr;Parent=Msa0433860-mRNA-1
chr3_2	three_prime_UTR	86461467	86461770	86461467	ID=Msa0433860-mRNA-1:three_prime_utr;Parent=Msa0433860-mRNA-1

Gene Sequence

>Msa0433860

ATGGAGTGGGTCGTTGGCGGAAAGTTTAAGATTGGTCGCAAAATCGGAAGCGGTTCATTTGGTGAAATTTATATAGCCTCTGATATGGACACCTCTGAGGTCGTTGCCGTCAAAATGGAGAAGAAGAGAACAAGGCATCCACAACTATTGTATGAGGCCAAATTATACAGTCTTCTCCAAGGAGAAAGTGGTATTCCAAGTATGAGATGGTGTGGTACTGATGGAGATCATAATATTCTGGTTATGGATCTTCTGGGACGTAGTCTGGAGGACCTTTTTGTCTTCTGCGGGAGCAAGTTTACTTTAAAAACAGTTTTAATGTTAGCAGACCAGATGCTTTCGAGAATAGAGTACATGCATTCCAAGGGATTTTTGCATAGAGACATCAAACCAGATAACTTCCTAATGGGTATTAGGAGAAAGTCAAGTCAGGTTTATATTATTGATTTCGGACTAGGAAAAAGATATCGGGACCCCAAAACAAGCAAGCATATTCCTTATAGAGAGAATAAAAGTTTAACAGGGACGGCACGATATGCAAGTTGCAATACTCACTTAGGAATCGAGCAAAGTCGTCGTGATGATTTGGAGTCTATTGGCTATGTGCTTATGTACTTCTTAAGAGGAAGCCTTCCTTGGCAGGGTCTGAAAGCTGTCACCAAAGAGGAAAAATATGACAAGATTCGTGAGAAGAAGTTATCAACTTCCACTGAGAAGCTTTGCGAATCATATCCCGTGGAGTTTGCGTCTTACTTTCATTATTGTCGCTCCTTGACATTTGATCAAGATCCAGATTATGGATTCTTAAAGCGTCTGTTTCGTGAGTTGTTCACTCGTGAAGGATATGACTATGACAATTTATTCGACTGGACCGTCCTAAAATATCAGCAGACGCAACAGACAAGGAGACAAAAGCAATCATCGCCTTCAGATGCCGTACCTAGTGCTGTGCCTAGCAGTCTACAACCAGTGGTTGTGGAAAAACATACAGGAATCAATAATTCACCTCAAGTTACTGTAACAAAACTGCTAACCAATCTTGATCGTCCAAATGTGCGTGTGCAGCCTAAGCCATCCAATCTAAAGAATCTAAATGCTAAGAATCATACCGGAAAACATAATGTGAACAATGATCCGTCCACTTCATCGGCTTTGCCCAAATCAACTGCAGAAAATGTCTCCAAGCCTGAAAGGCCCACAGGAACTTCAAACCTAGGTCGTGTGTTTGGGAATAACTCCCATATTTCAAGCAGCTGGATTCCTTCTTTACGGCGAATTTCTTCTACCAAATAG

Protein sequence

>Msa0433860

MEWVVGGKFKIGRKIGSGSFGEIYIASDMDTSEVVAVKMEKKRTRHPQLLYEAKLYSLLQGESGIPSMRWCGTDGDHNILVMDLLGRSLEDLFVFCGSKFTLKTVLMLADQMLSRIEYMHSKGFLHRDIKPDNFLMGIRRKSSQVYIIDFGLGKRYRDPKTSKHIPYRENKSLTGTARYASCNTHLGIEQSRRDDLESIGYVLMYFLRGSLPWQGLKAVTKEEKYDKIREKKLSTSTEKLCESYPVEFASYFHYCRSLTFDQDPDYGFLKRLFRELFTREGYDYDNLFDWTVLKYQQTQQTRRQKQSSPSDAVPSAVPSSLQPVVVEKHTGINNSPQVTVTKLLTNLDRPNVRVQPKPSNLKNLNAKNHTGKHNVNNDPSTSSALPKSTAENVSKPERPTGTSNLGRVFGNNSHISSSWIPSLRRISSTK*