Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0433940 | XP_024634048.1 | 86.182 | 550 | 48 | 6 | 1 | 523 | 1 | 549 | 0.0 | 894 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0433940 | sp|Q9SZD1|TCX5_ARATH | 35.448 | 536 | 268 | 18 | 13 | 506 | 24 | 523 | 1.31e-73 | 248 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0433940 | A0A072V2F6 | 81.884 | 552 | 69 | 9 | 1 | 523 | 1 | 550 | 0.0 | 850 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0433940 | TF | CPP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0433940 | MtrunA17_Chr3g0139951 | 85.250 | 400 | 39 | 4 | 1 | 380 | 1 | 400 | 0.0 | 632 |
| Msa0433940 | MtrunA17_Chr6g0485811 | 40.682 | 440 | 213 | 12 | 121 | 520 | 107 | 538 | 8.23e-83 | 269 |
| Msa0433940 | MtrunA17_Chr8g0390351 | 37.961 | 461 | 233 | 10 | 105 | 522 | 44 | 494 | 5.52e-80 | 261 |
| Msa0433940 | MtrunA17_Chr3g0139941 | 76.056 | 142 | 8 | 2 | 382 | 523 | 1 | 116 | 1.87e-63 | 204 |
| Msa0433940 | MtrunA17_Chr1g0149101 | 51.613 | 62 | 29 | 1 | 144 | 204 | 498 | 559 | 1.00e-13 | 74.3 |
| Msa0433940 | MtrunA17_Chr5g0394661 | 46.429 | 84 | 43 | 2 | 144 | 225 | 488 | 571 | 1.87e-13 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0433940 | AT4G29000.1 | 35.448 | 536 | 268 | 18 | 13 | 506 | 24 | 523 | 1.33e-74 | 248 |
| Msa0433940 | AT2G20110.3 | 36.526 | 449 | 226 | 12 | 80 | 506 | 66 | 477 | 8.42e-68 | 228 |
| Msa0433940 | AT2G20110.1 | 36.526 | 449 | 226 | 12 | 80 | 506 | 66 | 477 | 1.99e-67 | 228 |
| Msa0433940 | AT2G20110.2 | 36.465 | 447 | 225 | 12 | 80 | 504 | 66 | 475 | 2.60e-66 | 225 |
| Msa0433940 | AT5G25790.3 | 31.423 | 471 | 257 | 16 | 49 | 497 | 11 | 437 | 2.57e-48 | 174 |
| Msa0433940 | AT5G25790.1 | 30.689 | 479 | 254 | 15 | 49 | 497 | 11 | 441 | 4.64e-48 | 173 |
| Msa0433940 | AT5G25790.2 | 29.940 | 501 | 273 | 15 | 49 | 519 | 11 | 463 | 1.07e-47 | 173 |
| Msa0433940 | AT3G16160.1 | 26.087 | 391 | 223 | 15 | 112 | 498 | 34 | 362 | 2.02e-17 | 84.3 |
| Msa0433940 | AT3G22780.1 | 51.613 | 62 | 29 | 1 | 144 | 204 | 401 | 462 | 1.99e-12 | 70.5 |
| Msa0433940 | AT4G14770.1 | 51.613 | 62 | 29 | 1 | 144 | 204 | 375 | 436 | 3.74e-12 | 69.3 |
| Msa0433940 | AT3G22760.1 | 43.182 | 88 | 38 | 4 | 122 | 204 | 309 | 389 | 3.83e-12 | 69.3 |
| Msa0433940 | AT3G22760.2 | 43.182 | 88 | 38 | 4 | 122 | 204 | 186 | 266 | 3.88e-12 | 68.9 |
| Msa0433940 | AT4G14770.3 | 51.613 | 62 | 29 | 1 | 144 | 204 | 356 | 417 | 4.26e-12 | 69.3 |
| Msa0433940 | AT4G14770.2 | 51.613 | 62 | 29 | 1 | 144 | 204 | 355 | 416 | 4.77e-12 | 68.9 |
| Msa0433940 | AT3G04850.1 | 43.662 | 71 | 39 | 1 | 138 | 207 | 447 | 517 | 7.32e-12 | 68.6 |
Find 152 sgRNAs with CRISPR-Local
Find 465 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATCAATTTAAGTGTTTC+TGG | 0.101248 | 3_2:-86601622 | None:intergenic |
| GCTAAAGTACTTACAATTTA+AGG | 0.122883 | 3_2:-86599772 | None:intergenic |
| ATTATTCTTGGTAGCATTAA+AGG | 0.161832 | 3_2:+86601817 | Msa0433940:CDS |
| TTCTCTTCTTGGGTGTTATA+TGG | 0.169921 | 3_2:-86600477 | None:intergenic |
| CATTCCAATTGCCTCCTTTC+GGG | 0.215507 | 3_2:-86599966 | None:intergenic |
| ATACGAGTTTAAACATTAAA+TGG | 0.240463 | 3_2:+86605136 | Msa0433940:three_prime_UTR |
| ATTTGTCTTTGCAGCTTCTT+TGG | 0.243681 | 3_2:-86601144 | None:intergenic |
| GCAACTAATGCTGCCATTAA+TGG | 0.244194 | 3_2:+86600421 | Msa0433940:CDS |
| TCAAAATAAAGCAGGGTTAA+AGG | 0.248253 | 3_2:+86599700 | Msa0433940:CDS |
| TACTTACAATTTAAGGCATT+TGG | 0.284828 | 3_2:-86599765 | None:intergenic |
| TCTCTTCTTGGGTGTTATAT+GGG | 0.286069 | 3_2:-86600476 | None:intergenic |
| ACAAAATATTTGAAAGAGAT+TGG | 0.297176 | 3_2:-86604815 | None:intergenic |
| AAAATCACATACCTGAATTT+AGG | 0.297536 | 3_2:-86600969 | None:intergenic |
| TCATTCCAATTGCCTCCTTT+CGG | 0.299863 | 3_2:-86599967 | None:intergenic |
| AAGTCCAACTGCTCCATTAA+TGG | 0.310344 | 3_2:-86600434 | None:intergenic |
| TTGATATTGACATTCATAAT+AGG | 0.314713 | 3_2:+86601590 | Msa0433940:CDS |
| TAGTGACCTTACTTGTATAT+TGG | 0.319714 | 3_2:+86604715 | Msa0433940:intron |
| GGCTTATCCTGACCAAGTTC+AGG | 0.337443 | 3_2:+86601776 | Msa0433940:CDS |
| TCGGAAATTTGCGCGGCAAT+TGG | 0.338947 | 3_2:+86598174 | Msa0433940:CDS |
| CTTGGTGAACTGATTATTCT+TGG | 0.340192 | 3_2:+86601805 | Msa0433940:CDS |
| GCCTTATAGCGGCTATATTT+CGG | 0.340727 | 3_2:-86605010 | None:intergenic |
| TTGACTCAACTGCATGTAAC+TGG | 0.341419 | 3_2:+86604855 | Msa0433940:three_prime_UTR |
| TCAGTCCTGTCAAAAGAAAA+AGG | 0.352955 | 3_2:-86603753 | None:intergenic |
| TCCTCAGGCGCAAATGCATT+TGG | 0.353209 | 3_2:+86598303 | Msa0433940:CDS |
| AATAGAAGCTTCATATTTCT+CGG | 0.353823 | 3_2:-86601479 | None:intergenic |
| CTACTAACCATAGAAACTTC+TGG | 0.357925 | 3_2:-86600046 | None:intergenic |
| ATCACCCTGATGTTGAATTC+CGG | 0.368949 | 3_2:-86605064 | None:intergenic |
| TCCGAAATATAGCCGCTATA+AGG | 0.369771 | 3_2:+86605009 | Msa0433940:three_prime_UTR |
| TTTGCATGATTCTCCGAAAC+AGG | 0.382385 | 3_2:-86601547 | None:intergenic |
| ACCAAGTTCAGGGATGTTCT+TGG | 0.382968 | 3_2:+86601787 | Msa0433940:CDS |
| AACCTCTTCACCGGAAGCTT+TGG | 0.384541 | 3_2:-86598475 | None:intergenic |
| AGATGTTGCCAAGCCTGTTT+CGG | 0.392240 | 3_2:+86601534 | Msa0433940:CDS |
| AACACTCACAATACTTCTTA+AGG | 0.401328 | 3_2:-86600279 | None:intergenic |
| TTTAAACATTAAATGGTGAT+TGG | 0.402292 | 3_2:+86605143 | Msa0433940:three_prime_UTR |
| TTAATAGGAAGGCACAATAA+AGG | 0.404131 | 3_2:+86600235 | Msa0433940:intron |
| TAATTTCAAGACCTAAATTC+AGG | 0.410173 | 3_2:+86600958 | Msa0433940:CDS |
| GCGTCGGTGGCGACAATGTC+AGG | 0.412454 | 3_2:-86598228 | None:intergenic |
| AACAACCGGAAGTGGTAATC+TGG | 0.413771 | 3_2:+86603713 | Msa0433940:three_prime_UTR |
| GGACTTGGACCCTCCATCTC+TGG | 0.418333 | 3_2:+86600451 | Msa0433940:CDS |
| ATTAATGGAGCAGTTGGACT+TGG | 0.419842 | 3_2:+86600436 | Msa0433940:CDS |
| GCTACCTATGCAAGAACTAA+TGG | 0.420530 | 3_2:+86603648 | Msa0433940:three_prime_UTR |
| TAAATTGATGTGTGATGAAC+AGG | 0.421391 | 3_2:+86601633 | Msa0433940:CDS |
| AGCCACTGGGATGGAGCAAT+TGG | 0.435821 | 3_2:-86603628 | None:intergenic |
| CAAAATATTTGAAAGAGATT+GGG | 0.437425 | 3_2:-86604814 | None:intergenic |
| TCATGCCGGAATTCAACATC+AGG | 0.439954 | 3_2:+86605059 | Msa0433940:three_prime_UTR |
| TTAACTCCAATATACAAGTA+AGG | 0.446671 | 3_2:-86604721 | None:intergenic |
| AACATTAAATGGTGATTGGT+GGG | 0.447498 | 3_2:+86605147 | Msa0433940:three_prime_UTR |
| GTACTCCACACCAAAGCTTC+CGG | 0.447922 | 3_2:+86598465 | Msa0433940:CDS |
| TACTGTGAGTGCTATGCAGC+TGG | 0.448205 | 3_2:+86599884 | Msa0433940:CDS |
| AAAGGAAGCTGACAGGGATA+AGG | 0.448296 | 3_2:-86600913 | None:intergenic |
| CGACGCTGGATTTAACTAAT+CGG | 0.448613 | 3_2:+86598155 | Msa0433940:CDS |
| ACATGAGCAGCATCACTTAC+GGG | 0.448758 | 3_2:-86604771 | None:intergenic |
| CACATGAGCAGCATCACTTA+CGG | 0.452805 | 3_2:-86604772 | None:intergenic |
| TGTATATTGGAGTTAAGAAA+AGG | 0.456535 | 3_2:+86604728 | Msa0433940:three_prime_UTR |
| TTGCCTGCGGATTGAACAAC+CGG | 0.458472 | 3_2:+86603699 | Msa0433940:three_prime_UTR |
| TTCAAATTTCCAGAAATGAG+AGG | 0.459036 | 3_2:+86601433 | Msa0433940:intron |
| CATGACTGCTCAACACCAAC+AGG | 0.467343 | 3_2:+86600549 | Msa0433940:CDS |
| ACCAAGAACATCCCTGAACT+TGG | 0.469962 | 3_2:-86601788 | None:intergenic |
| ATACACCAGATTACCACTTC+CGG | 0.470900 | 3_2:-86603718 | None:intergenic |
| TGATAGTGGTGCTGAAACTA+AGG | 0.471033 | 3_2:+86603581 | Msa0433940:exon |
| CACTGCTGTTTATGCAGAGC+AGG | 0.471249 | 3_2:+86601750 | Msa0433940:CDS |
| CTGTTTATGCAGAGCAGGAA+AGG | 0.476553 | 3_2:+86601755 | Msa0433940:CDS |
| AAGGAAGCTGACAGGGATAA+GGG | 0.478405 | 3_2:-86600912 | None:intergenic |
| TCACAGCCTCAAAATAAAGC+AGG | 0.479128 | 3_2:+86599692 | Msa0433940:CDS |
| GCTGCCCGAAAGGAGGCAAT+TGG | 0.479529 | 3_2:+86599962 | Msa0433940:CDS |
| GTTCTTGCATAGGTAGCCAC+TGG | 0.479534 | 3_2:-86603642 | None:intergenic |
| GATAAGGGAGATGAAGCTAT+AGG | 0.479560 | 3_2:-86600897 | None:intergenic |
| GAACATCCCTGAACTTGGTC+AGG | 0.480468 | 3_2:-86601783 | None:intergenic |
| AAACATTAAATGGTGATTGG+TGG | 0.492778 | 3_2:+86605146 | Msa0433940:three_prime_UTR |
| GATTGAAAATGCGGCATCAC+CGG | 0.492928 | 3_2:-86598403 | None:intergenic |
| GGAGAAGAGCGAAACGACGC+TGG | 0.493971 | 3_2:+86598141 | Msa0433940:CDS |
| CGGGAACAAAGGAAGCTGAC+AGG | 0.494375 | 3_2:-86600920 | None:intergenic |
| TGTTATATGGGTTCCAGAGA+TGG | 0.499612 | 3_2:-86600464 | None:intergenic |
| TGAGGCTGTGATCTAGGGCT+AGG | 0.501431 | 3_2:-86599680 | None:intergenic |
| AGCGAAACTAACTGCGGGCG+CGG | 0.501792 | 3_2:-86598427 | None:intergenic |
| AAAGGATGTCACTGCAAGAA+AGG | 0.510127 | 3_2:+86600253 | Msa0433940:CDS |
| TTGGATTTCGCCGCCGCATG+TGG | 0.510164 | 3_2:+86598193 | Msa0433940:CDS |
| CTTCCGGTTGTTCAATCCGC+AGG | 0.513069 | 3_2:-86603702 | None:intergenic |
| TCAAATTTCCAGAAATGAGA+GGG | 0.516415 | 3_2:+86601434 | Msa0433940:intron |
| GCTTATCCTGACCAAGTTCA+GGG | 0.520596 | 3_2:+86601777 | Msa0433940:CDS |
| CAAAAGTCTTCCAACTCTGA+TGG | 0.520619 | 3_2:+86601724 | Msa0433940:CDS |
| ATGATTCTCCGAAACAGGCT+TGG | 0.524373 | 3_2:-86601542 | None:intergenic |
| GCGGATTGAACAACCGGAAG+TGG | 0.525965 | 3_2:+86603705 | Msa0433940:three_prime_UTR |
| GCTGCCATTAATGGAGCAGT+TGG | 0.529615 | 3_2:+86600430 | Msa0433940:CDS |
| CAGAGCAGAGGACGTTGGCA+TGG | 0.529760 | 3_2:-86600303 | None:intergenic |
| AGTCACCAGTGAGACGGCCG+TGG | 0.538539 | 3_2:+86598332 | Msa0433940:intron |
| CACCAAAGCTTCCGGTGAAG+AGG | 0.538599 | 3_2:+86598473 | Msa0433940:CDS |
| GAAGCTGCAAAGACAAATGC+AGG | 0.539292 | 3_2:+86601149 | Msa0433940:CDS |
| TGTGACAGTGACTGCGGCGT+CGG | 0.541888 | 3_2:-86598244 | None:intergenic |
| TGTGGTGGTGATTGTTTCCA+CGG | 0.542299 | 3_2:-86598349 | None:intergenic |
| CTCTAGTGATAACCAAGTCT+TGG | 0.543616 | 3_2:+86604883 | Msa0433940:three_prime_UTR |
| AGCGCTTGAAACCTCTTCAC+CGG | 0.544016 | 3_2:-86598484 | None:intergenic |
| ACCGTCGGATTTGCCTCCTC+AGG | 0.544028 | 3_2:+86598288 | Msa0433940:CDS |
| TTCATGTTGAAGGTCTGTGT+TGG | 0.547492 | 3_2:+86601064 | Msa0433940:intron |
| GGAAGCTTTGGTGTGGAGTA+CGG | 0.547715 | 3_2:-86598463 | None:intergenic |
| TCCAAATGCATTTGCGCCTG+AGG | 0.547952 | 3_2:-86598304 | None:intergenic |
| CTCTGCTGCTGCCACTGTGG+TGG | 0.557444 | 3_2:-86598364 | None:intergenic |
| TCTGTGTCCATGCCAAGACT+TGG | 0.562400 | 3_2:-86604895 | None:intergenic |
| GAACAATGAGGCTGCCCGAA+AGG | 0.567258 | 3_2:+86599952 | Msa0433940:CDS |
| GGAGGCAAATCCGACGGTGT+CGG | 0.569363 | 3_2:-86598283 | None:intergenic |
| TGCATAGGTAGCCACTGGGA+TGG | 0.569627 | 3_2:-86603637 | None:intergenic |
| ATAGGCAGTGTCGGGAACAA+AGG | 0.570031 | 3_2:-86600931 | None:intergenic |
| ATGTCCATTAGTTCTTGCAT+AGG | 0.570734 | 3_2:-86603652 | None:intergenic |
| GATTTCGCCGCCGCATGTGG+AGG | 0.572850 | 3_2:+86598196 | Msa0433940:CDS |
| AAATGAGAGGGAAAGCTGCT+AGG | 0.574833 | 3_2:+86601446 | Msa0433940:CDS |
| CGGTGTCGGAGGTCGTAGAA+TGG | 0.576418 | 3_2:-86598269 | None:intergenic |
| AGCAGTGTATCCATCAGAGT+TGG | 0.576661 | 3_2:-86601734 | None:intergenic |
| TAGTCTAGTTCAAATCAGAC+AGG | 0.581100 | 3_2:+86600399 | Msa0433940:CDS |
| ACATTAAATGGTGATTGGTG+GGG | 0.582688 | 3_2:+86605148 | Msa0433940:three_prime_UTR |
| TTAAGTGTTTCTGGTGACAG+TGG | 0.589606 | 3_2:-86601613 | None:intergenic |
| AAATGCATTTGCGCCTGAGG+AGG | 0.589658 | 3_2:-86598301 | None:intergenic |
| GGAGGCAATTGGAATGACAC+TGG | 0.589713 | 3_2:+86599973 | Msa0433940:CDS |
| GACAGTGACTGCGGCGTCGG+TGG | 0.593114 | 3_2:-86598241 | None:intergenic |
| GTGATAACCAAGTCTTGGCA+TGG | 0.593911 | 3_2:+86604888 | Msa0433940:three_prime_UTR |
| CTTCACCGGAAGCTTTGGTG+TGG | 0.594505 | 3_2:-86598470 | None:intergenic |
| CAATGAGGCTGCCCGAAAGG+AGG | 0.594923 | 3_2:+86599955 | Msa0433940:CDS |
| CACAGCCTCAAAATAAAGCA+GGG | 0.602704 | 3_2:+86599693 | Msa0433940:CDS |
| GAATCAGCGAAACTAACTGC+GGG | 0.605382 | 3_2:-86598432 | None:intergenic |
| GGCAAATCCGACGGTGTCGG+AGG | 0.608094 | 3_2:-86598280 | None:intergenic |
| TATATGGGTTCCAGAGATGG+AGG | 0.609649 | 3_2:-86600461 | None:intergenic |
| GCAGCTGGGATCTATTGTGA+TGG | 0.610068 | 3_2:+86599899 | Msa0433940:CDS |
| GAGAACGTCACAGTCTCCGC+CGG | 0.610187 | 3_2:+86598384 | Msa0433940:CDS |
| GGGAACAAAGGAAGCTGACA+GGG | 0.612362 | 3_2:-86600919 | None:intergenic |
| GGGCGCGGTGATTGAAAATG+CGG | 0.613912 | 3_2:-86598412 | None:intergenic |
| ACATTCATATCATTTCATGC+CGG | 0.617946 | 3_2:+86605045 | Msa0433940:three_prime_UTR |
| TCTTTCGTTGAGGTTGCCTG+CGG | 0.618808 | 3_2:+86603686 | Msa0433940:three_prime_UTR |
| ACTGTGAGTGCTATGCAGCT+GGG | 0.620605 | 3_2:+86599885 | Msa0433940:CDS |
| TGATGTGTGATGAACAGGAT+GGG | 0.620967 | 3_2:+86601638 | Msa0433940:CDS |
| AGACTTGGTTATCACTAGAG+AGG | 0.626203 | 3_2:-86604880 | None:intergenic |
| ATACTACTGATCTTTCGTTG+AGG | 0.630168 | 3_2:+86603676 | Msa0433940:three_prime_UTR |
| GCCTGAGGAGGCAAATCCGA+CGG | 0.632396 | 3_2:-86598289 | None:intergenic |
| TTCTTGCATAGGTAGCCACT+GGG | 0.635007 | 3_2:-86603641 | None:intergenic |
| ATGTGCATATAGTTAGATGT+TGG | 0.637325 | 3_2:+86604790 | Msa0433940:three_prime_UTR |
| TCATAATAATCTGAACAATG+AGG | 0.638704 | 3_2:+86599940 | Msa0433940:CDS |
| GATAGTGGTGCTGAAACTAA+GGG | 0.640097 | 3_2:+86603582 | Msa0433940:exon |
| TGAAAATGCGGCATCACCGG+CGG | 0.641386 | 3_2:-86598400 | None:intergenic |
| GGCGACAATGTCAGGTACGA+CGG | 0.643457 | 3_2:-86598220 | None:intergenic |
| GGACTGAATTTGGATTGTGA+AGG | 0.643904 | 3_2:+86603769 | Msa0433940:three_prime_UTR |
| CATGCCGGAATTCAACATCA+GGG | 0.653494 | 3_2:+86605060 | Msa0433940:three_prime_UTR |
| TAACTAATCGGAAATTTGCG+CGG | 0.669670 | 3_2:+86598167 | Msa0433940:CDS |
| ATATGGGTTCCAGAGATGGA+GGG | 0.670217 | 3_2:-86600460 | None:intergenic |
| AGTACATGTGTGCCTTATAG+CGG | 0.671325 | 3_2:-86605021 | None:intergenic |
| TCTACGACCTCCGACACCGT+CGG | 0.672076 | 3_2:+86598273 | Msa0433940:CDS |
| TTGATGTGTGATGAACAGGA+TGG | 0.672796 | 3_2:+86601637 | Msa0433940:CDS |
| GTTCTCTGCTGCTGCCACTG+TGG | 0.675511 | 3_2:-86598367 | None:intergenic |
| CGACGGACCTCCACATGCGG+CGG | 0.682146 | 3_2:-86598203 | None:intergenic |
| GTACGACGGACCTCCACATG+CGG | 0.684282 | 3_2:-86598206 | None:intergenic |
| TGCCAATTGCTCCATCCCAG+TGG | 0.687073 | 3_2:+86603626 | Msa0433940:three_prime_UTR |
| ATAGTGGTGCTGAAACTAAG+GGG | 0.690161 | 3_2:+86603583 | Msa0433940:exon |
| TGAATCAGCGAAACTAACTG+CGG | 0.724718 | 3_2:-86598433 | None:intergenic |
| ATGGTTTGTGACAGTGACTG+CGG | 0.730603 | 3_2:-86598250 | None:intergenic |
| GGAAACAATCACCACCACAG+TGG | 0.761756 | 3_2:+86598353 | Msa0433940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTAAAATTTATAATTTA+GGG | - | chr3_2:86602844-86602863 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+TGG | - | chr3_2:86603884-86603903 | None:intergenic | 0.0% |
| !! | TTATAAAAACTAATAAGATT+TGG | - | chr3_2:86599456-86599475 | None:intergenic | 10.0% |
| !!! | ATCTTATTAGTTTTTATAAA+AGG | + | chr3_2:86599457-86599476 | Msa0433940:intron | 10.0% |
| !! | TAAAAGATATTAATTACAAT+CGG | - | chr3_2:86600846-86600865 | None:intergenic | 10.0% |
| !! | AATATGAATATAAAAAAAAC+CGG | + | chr3_2:86601029-86601048 | Msa0433940:intron | 10.0% |
| !! | GAAACTTAAATTAATAAAAA+TGG | + | chr3_2:86603036-86603055 | Msa0433940:intron | 10.0% |
| !!! | TTTTAAAACCTTTAATTAAA+TGG | + | chr3_2:86604193-86604212 | Msa0433940:intron | 10.0% |
| !!! | ATTTTTTTTTTTTCCTGAAT+GGG | + | chr3_2:86598575-86598594 | Msa0433940:intron | 15.0% |
| !!! | ATGAATTATTGACTTAAAAT+TGG | - | chr3_2:86599272-86599291 | None:intergenic | 15.0% |
| !!! | AATGATCAGTATATTTTTAT+TGG | - | chr3_2:86599505-86599524 | None:intergenic | 15.0% |
| !!! | CTTTCCATTTATATTTTATA+CGG | + | chr3_2:86599529-86599548 | Msa0433940:intron | 15.0% |
| !!! | TATTGATAGCTAAATTAATA+GGG | - | chr3_2:86600799-86600818 | None:intergenic | 15.0% |
| !!! | ATATTGATAGCTAAATTAAT+AGG | - | chr3_2:86600800-86600819 | None:intergenic | 15.0% |
| !! | TATTAATTTAATCGTCATTA+AGG | - | chr3_2:86603005-86603024 | None:intergenic | 15.0% |
| !! | GACGATTAAATTAATAAAAA+TGG | + | chr3_2:86603009-86603028 | Msa0433940:intron | 15.0% |
| !!! | GATACTATAATACATTTTTT+TGG | + | chr3_2:86603226-86603245 | Msa0433940:intron | 15.0% |
| !!! | AAAAATTAAAGCTACTTTTA+GGG | - | chr3_2:86603362-86603381 | None:intergenic | 15.0% |
| !!! | AAAAAATTAAAGCTACTTTT+AGG | - | chr3_2:86603363-86603382 | None:intergenic | 15.0% |
| !! | AAATTATAAATTGTGTAAGA+TGG | + | chr3_2:86603967-86603986 | Msa0433940:intron | 15.0% |
| !! | GAAATATACCATTTAATTAA+AGG | - | chr3_2:86604204-86604223 | None:intergenic | 15.0% |
| !! | TTGGAAATTGTAATATTAAA+TGG | + | chr3_2:86604238-86604257 | Msa0433940:intron | 15.0% |
| !! | TTAACCTTATTAAAATAACT+TGG | + | chr3_2:86604380-86604399 | Msa0433940:intron | 15.0% |
| !!! | AATAGAGTATTTTTGTATAT+AGG | + | chr3_2:86604499-86604518 | Msa0433940:intron | 15.0% |
| !!! | GATTTTTTTTTTTTCCTGAA+TGG | + | chr3_2:86598574-86598593 | Msa0433940:intron | 20.0% |
| !!! | GGTTGCATTTTATTTATTTT+TGG | + | chr3_2:86598596-86598615 | Msa0433940:intron | 20.0% |
| !!! | ATTTTAGTATCAGAAACATA+AGG | + | chr3_2:86599088-86599107 | Msa0433940:intron | 20.0% |
| !!! | TTTGTTAATGATTGCATTTT+CGG | + | chr3_2:86599389-86599408 | Msa0433940:intron | 20.0% |
| !!! | ATATTTTTATTGGCAAGTTT+AGG | - | chr3_2:86599495-86599514 | None:intergenic | 20.0% |
| !! | AAATCAATGTGAAACTAATA+AGG | + | chr3_2:86600677-86600696 | Msa0433940:intron | 20.0% |
| !!! | AGGTCTTGAAATTATTTTAT+AGG | - | chr3_2:86600952-86600971 | None:intergenic | 20.0% |
| !!! | TGTGATTTTTTTCAATCATT+AGG | + | chr3_2:86600983-86601002 | Msa0433940:intron | 20.0% |
| !! | ACATGAAATATTGTTAATTC+CGG | - | chr3_2:86601051-86601070 | None:intergenic | 20.0% |
| !! | TTAACAATATTTCATGTTGA+AGG | + | chr3_2:86601054-86601073 | Msa0433940:intron | 20.0% |
| !! | TTGATATTGACATTCATAAT+AGG | + | chr3_2:86601590-86601609 | Msa0433940:CDS | 20.0% |
| !!! | TTTACAATTTTGACATTGTT+GGG | + | chr3_2:86601869-86601888 | Msa0433940:intron | 20.0% |
| !! | TGAAAAATACTTGATTCAAA+TGG | + | chr3_2:86601976-86601995 | Msa0433940:intron | 20.0% |
| !! | GAAAAATACTTGATTCAAAT+GGG | + | chr3_2:86601977-86601996 | Msa0433940:intron | 20.0% |
| !! | ATAGATTTCTTGCTTTATAT+CGG | + | chr3_2:86602037-86602056 | Msa0433940:intron | 20.0% |
| !!! | TTTTGATATCGATAATTTTG+AGG | - | chr3_2:86602495-86602514 | None:intergenic | 20.0% |
| !! | TCAAAAACAAAGCAAAAAAA+TGG | - | chr3_2:86602683-86602702 | None:intergenic | 20.0% |
| !! | AAACTTAACATACTAAAAAG+AGG | - | chr3_2:86602708-86602727 | None:intergenic | 20.0% |
| !! | TGAGGAAATAAAAAAAATTC+AGG | - | chr3_2:86603159-86603178 | None:intergenic | 20.0% |
| !!! | ACTATAATACATTTTTTTGG+TGG | + | chr3_2:86603229-86603248 | Msa0433940:intron | 20.0% |
| !! | TTCTTAATATAGAAGTTTGA+TGG | - | chr3_2:86603444-86603463 | None:intergenic | 20.0% |
| !! | CATTTAAACTATAAGCATAT+TGG | - | chr3_2:86604105-86604124 | None:intergenic | 20.0% |
| !! | ATATGCTTATAGTTTAAATG+AGG | + | chr3_2:86604105-86604124 | Msa0433940:intron | 20.0% |
| !! | TATGCTTATAGTTTAAATGA+GGG | + | chr3_2:86604106-86604125 | Msa0433940:intron | 20.0% |
| !!! | AAAGGTTTTAAAAAGTGTAT+GGG | - | chr3_2:86604186-86604205 | None:intergenic | 20.0% |
| !!! | TAAAGGTTTTAAAAAGTGTA+TGG | - | chr3_2:86604187-86604206 | None:intergenic | 20.0% |
| !!! | ATTTCTATGAAATTTTGTGT+TGG | + | chr3_2:86604219-86604238 | Msa0433940:intron | 20.0% |
| !! | CAAAATATTTGAAAGAGATT+GGG | - | chr3_2:86604817-86604836 | None:intergenic | 20.0% |
| !! | ACAAAATATTTGAAAGAGAT+TGG | - | chr3_2:86604818-86604837 | None:intergenic | 20.0% |
| !! | ATACGAGTTTAAACATTAAA+TGG | + | chr3_2:86605136-86605155 | Msa0433940:three_prime_UTR | 20.0% |
| !! | TTTAAACATTAAATGGTGAT+TGG | + | chr3_2:86605143-86605162 | Msa0433940:three_prime_UTR | 20.0% |
| ! | ACAATGCATAATATATGCAA+AGG | + | chr3_2:86598690-86598709 | Msa0433940:intron | 25.0% |
| !!! | TGTGTATGGTTTTTTTTTTG+TGG | - | chr3_2:86598737-86598756 | None:intergenic | 25.0% |
| ! | ATGATAAGAATGTTAGTGTA+TGG | + | chr3_2:86598861-86598880 | Msa0433940:intron | 25.0% |
| !! | CATAATTTAGAATGCAGAAT+TGG | + | chr3_2:86599041-86599060 | Msa0433940:intron | 25.0% |
| !!! | TTGGAGAACTTTTAAAGATA+TGG | + | chr3_2:86599190-86599209 | Msa0433940:intron | 25.0% |
| !!! | AGAACTTTTAAAGATATGGA+TGG | + | chr3_2:86599194-86599213 | Msa0433940:intron | 25.0% |
| !!! | CCAAGTTCTATTTTTAAACA+TGG | - | chr3_2:86599329-86599348 | None:intergenic | 25.0% |
| ! | CCATGTTTAAAAATAGAACT+TGG | + | chr3_2:86599326-86599345 | Msa0433940:intron | 25.0% |
| !! | TTGTTAATGATTGCATTTTC+GGG | + | chr3_2:86599390-86599409 | Msa0433940:intron | 25.0% |
| ! | TATAAATTTGCCACTAAACT+AGG | + | chr3_2:86599424-86599443 | Msa0433940:intron | 25.0% |
| !!! | ATAAAACAGTCTTTTTGAAG+GGG | - | chr3_2:86599556-86599575 | None:intergenic | 25.0% |
| !! | GATAAAACAGTCTTTTTGAA+GGG | - | chr3_2:86599557-86599576 | None:intergenic | 25.0% |
| !! | AGATAAAACAGTCTTTTTGA+AGG | - | chr3_2:86599558-86599577 | None:intergenic | 25.0% |
| !! | TACTTACAATTTAAGGCATT+TGG | - | chr3_2:86599768-86599787 | None:intergenic | 25.0% |
| !! | GCTAAAGTACTTACAATTTA+AGG | - | chr3_2:86599775-86599794 | None:intergenic | 25.0% |
| ! | TGTATGAAAAACTTTCATCA+AGG | + | chr3_2:86599800-86599819 | Msa0433940:intron | 25.0% |
| !! | ATTGTTATAAAGAAAGTGCA+CGG | - | chr3_2:86599842-86599861 | None:intergenic | 25.0% |
| ! | TCATAATAATCTGAACAATG+AGG | + | chr3_2:86599940-86599959 | Msa0433940:CDS | 25.0% |
| ! | GTTTGTTCAAGACATTTAAA+TGG | - | chr3_2:86600190-86600209 | None:intergenic | 25.0% |
| !! | GTGTCTGAAATTCAATTAAT+AGG | + | chr3_2:86600220-86600239 | Msa0433940:intron | 25.0% |
| ! | CTGAAATTCAATTAATAGGA+AGG | + | chr3_2:86600224-86600243 | Msa0433940:intron | 25.0% |
| !!! | AACTAAGAAGTTGATAAATG+CGG | - | chr3_2:86600736-86600755 | None:intergenic | 25.0% |
| !!! | AATTATTTTATAGGCAGTGT+CGG | - | chr3_2:86600943-86600962 | None:intergenic | 25.0% |
| ! | TAATTTCAAGACCTAAATTC+AGG | + | chr3_2:86600958-86600977 | Msa0433940:CDS | 25.0% |
| ! | AAAATCACATACCTGAATTT+AGG | - | chr3_2:86600972-86600991 | None:intergenic | 25.0% |
| !! | AATTTGATGCATCTATTTTG+TGG | + | chr3_2:86601216-86601235 | Msa0433940:intron | 25.0% |
| ! | ATCAAATGTGTGAAAAAGTA+GGG | - | chr3_2:86601383-86601402 | None:intergenic | 25.0% |
| ! | AAAACAATTACAATGTCAGT+CGG | - | chr3_2:86601414-86601433 | None:intergenic | 25.0% |
| ! | AATAGAAGCTTCATATTTCT+CGG | - | chr3_2:86601482-86601501 | None:intergenic | 25.0% |
| !! | ATTATTCTTGGTAGCATTAA+AGG | + | chr3_2:86601817-86601836 | Msa0433940:CDS | 25.0% |
| ! | CAACAATGTCAAAATTGTAA+AGG | - | chr3_2:86601870-86601889 | None:intergenic | 25.0% |
| !!! | CTTTACAATTTTGACATTGT+TGG | + | chr3_2:86601868-86601887 | Msa0433940:intron | 25.0% |
| !!! | TTACAATTTTGACATTGTTG+GGG | + | chr3_2:86601870-86601889 | Msa0433940:intron | 25.0% |
| !! | CAAATGGGTTTATATTAAAG+AGG | + | chr3_2:86601992-86602011 | Msa0433940:intron | 25.0% |
| ! | AAAGCAAGAAATCTATAGAT+GGG | - | chr3_2:86602033-86602052 | None:intergenic | 25.0% |
| ! | TAAAGCAAGAAATCTATAGA+TGG | - | chr3_2:86602034-86602053 | None:intergenic | 25.0% |
| !!! | GATCTTTTTTATGATAGAGA+GGG | - | chr3_2:86602470-86602489 | None:intergenic | 25.0% |
| !!! | TGATCTTTTTTATGATAGAG+AGG | - | chr3_2:86602471-86602490 | None:intergenic | 25.0% |
| ! | TTATCGATATCAAAACCTTT+AGG | + | chr3_2:86602500-86602519 | Msa0433940:intron | 25.0% |
| ! | TATTAGACAAAAAAGAGCTT+AGG | + | chr3_2:86602548-86602567 | Msa0433940:intron | 25.0% |
| ! | TTAAATATGTGATGTGATTG+AGG | + | chr3_2:86602785-86602804 | Msa0433940:intron | 25.0% |
| ! | ATCAGAAAAGACTAGAATAT+AGG | - | chr3_2:86603079-86603098 | None:intergenic | 25.0% |
| !!! | CTTTTATTTTTTTCCCAGAA+CGG | + | chr3_2:86603124-86603143 | Msa0433940:intron | 25.0% |
| ! | ATAGTATCCAATCAAACATA+TGG | - | chr3_2:86603214-86603233 | None:intergenic | 25.0% |
| !!! | ATAATACATTTTTTTGGTGG+TGG | + | chr3_2:86603232-86603251 | Msa0433940:intron | 25.0% |
| ! | TTTATTTAACATCAGTAACC+TGG | + | chr3_2:86603380-86603399 | Msa0433940:intron | 25.0% |
| ! | TTATTTAACATCAGTAACCT+GGG | + | chr3_2:86603381-86603400 | Msa0433940:intron | 25.0% |
| ! | ATAGAAGTTTGATGGAATAA+AGG | - | chr3_2:86603436-86603455 | None:intergenic | 25.0% |
| ! | AGAAAACACCTAAAAAACAA+TGG | + | chr3_2:86603558-86603577 | Msa0433940:CDS | 25.0% |
| ! | TGTCTGTTATTCAAAATTCT+TGG | - | chr3_2:86603859-86603878 | None:intergenic | 25.0% |
| !! | TCAATAATGGAATATATGAG+AGG | + | chr3_2:86604027-86604046 | Msa0433940:intron | 25.0% |
| ! | AATGAGAGATTATAAATGAG+AGG | + | chr3_2:86604334-86604353 | Msa0433940:intron | 25.0% |
| ! | ATGAGAGATTATAAATGAGA+GGG | + | chr3_2:86604335-86604354 | Msa0433940:intron | 25.0% |
| !!! | CACTCCAAGTTATTTTAATA+AGG | - | chr3_2:86604387-86604406 | None:intergenic | 25.0% |
| !!! | TATTTTTGTATATAGGCCAA+TGG | + | chr3_2:86604506-86604525 | Msa0433940:intron | 25.0% |
| ! | TTAACTCCAATATACAAGTA+AGG | - | chr3_2:86604724-86604743 | None:intergenic | 25.0% |
| ! | TGTATATTGGAGTTAAGAAA+AGG | + | chr3_2:86604728-86604747 | Msa0433940:three_prime_UTR | 25.0% |
| !! | TCTCTTTCAAATATTTTGTC+TGG | + | chr3_2:86604819-86604838 | Msa0433940:three_prime_UTR | 25.0% |
| !! | TGTTTACTTTCAACTTTTCA+AGG | + | chr3_2:86604927-86604946 | Msa0433940:three_prime_UTR | 25.0% |
| !!! | AAGTTTCTAAGACCAAAAAT+GGG | - | chr3_2:86604986-86605005 | None:intergenic | 25.0% |
| !!! | TAAGTTTCTAAGACCAAAAA+TGG | - | chr3_2:86604987-86605006 | None:intergenic | 25.0% |
| !!! | CTTGTGTATTTTAAAGTTGA+TGG | + | chr3_2:86605108-86605127 | Msa0433940:three_prime_UTR | 25.0% |
| AAATAAAATGCAACCCATTC+AGG | - | chr3_2:86598591-86598610 | None:intergenic | 30.0% | |
| AAAAAACCATACACAAGTGA+AGG | + | chr3_2:86598742-86598761 | Msa0433940:intron | 30.0% | |
| ! | TAACAATTTCGGCATTTTGA+CGG | + | chr3_2:86598800-86598819 | Msa0433940:intron | 30.0% |
| TAATTAACTACACGTTGTGT+TGG | + | chr3_2:86598931-86598950 | Msa0433940:intron | 30.0% | |
| AATGCAGAATTGGATGTATT+AGG | + | chr3_2:86599051-86599070 | Msa0433940:intron | 30.0% | |
| ATGCAGAATTGGATGTATTA+GGG | + | chr3_2:86599052-86599071 | Msa0433940:intron | 30.0% | |
| ATGTATTAGGGATGTATGTT+TGG | + | chr3_2:86599064-86599083 | Msa0433940:intron | 30.0% | |
| TTAGCTTCTATTTGAAGACA+AGG | + | chr3_2:86599124-86599143 | Msa0433940:intron | 30.0% | |
| TAGCTTCTATTTGAAGACAA+GGG | + | chr3_2:86599125-86599144 | Msa0433940:intron | 30.0% | |
| !! | TACTAATGTAAAGAGCATCA+GGG | + | chr3_2:86599226-86599245 | Msa0433940:intron | 30.0% |
| ATGCAATCATTAACAAACCT+CGG | - | chr3_2:86599386-86599405 | None:intergenic | 30.0% | |
| GGGACCGTATAAAATATAAA+TGG | - | chr3_2:86599536-86599555 | None:intergenic | 30.0% | |
| !!! | TTTAACCCTGCTTTATTTTG+AGG | - | chr3_2:86599701-86599720 | None:intergenic | 30.0% |
| TCAAAATAAAGCAGGGTTAA+AGG | + | chr3_2:86599700-86599719 | Msa0433940:CDS | 30.0% | |
| !!! | ATTTTTGGTCTGAAAGCATT+TGG | - | chr3_2:86600007-86600026 | None:intergenic | 30.0% |
| !!! | ATAGAAACTTCTGGTTTTTG+CGG | - | chr3_2:86600040-86600059 | None:intergenic | 30.0% |
| ! | CAGTCTTTTGAGCTAAAATT+TGG | + | chr3_2:86600112-86600131 | Msa0433940:intron | 30.0% |
| !! | GGTGCTGTTAATAACTATTA+TGG | + | chr3_2:86600133-86600152 | Msa0433940:intron | 30.0% |
| !!! | CTGATATTTTAGCTTACTTG+TGG | + | chr3_2:86600162-86600181 | Msa0433940:intron | 30.0% |
| TAAATGTCTTGAACAAACTC+AGG | + | chr3_2:86600192-86600211 | Msa0433940:intron | 30.0% | |
| ! | TTAATAGGAAGGCACAATAA+AGG | + | chr3_2:86600235-86600254 | Msa0433940:intron | 30.0% |
| AACACTCACAATACTTCTTA+AGG | - | chr3_2:86600282-86600301 | None:intergenic | 30.0% | |
| ! | ATTTACAATTTTCAGAGCAG+AGG | - | chr3_2:86600318-86600337 | None:intergenic | 30.0% |
| ! | ATTGACTGCAAGAATTTTGA+AGG | + | chr3_2:86600340-86600359 | Msa0433940:intron | 30.0% |
| ! | AAAAACCAGGAAAGTTTTTC+TGG | + | chr3_2:86600499-86600518 | Msa0433940:CDS | 30.0% |
| GCTTCTTTGCATTATTGATA+CGG | + | chr3_2:86600573-86600592 | Msa0433940:intron | 30.0% | |
| TTAGTTACTCTTTCTGTTGT+AGG | + | chr3_2:86600622-86600641 | Msa0433940:intron | 30.0% | |
| TAGTTACTCTTTCTGTTGTA+GGG | + | chr3_2:86600623-86600642 | Msa0433940:intron | 30.0% | |
| CCAAACATAGTGAATTTGAA+TGG | - | chr3_2:86600652-86600671 | None:intergenic | 30.0% | |
| CCATTCAAATTCACTATGTT+TGG | + | chr3_2:86600649-86600668 | Msa0433940:intron | 30.0% | |
| !! | ACTAAGAAGTTGATAAATGC+GGG | - | chr3_2:86600735-86600754 | None:intergenic | 30.0% |
| !!! | TTAGTTCTGTTTTAATCCCT+TGG | + | chr3_2:86600750-86600769 | Msa0433940:intron | 30.0% |
| AAATTAATAGGGAAGTAGCA+AGG | - | chr3_2:86600788-86600807 | None:intergenic | 30.0% | |
| !! | CGCTATCTTGAATTTTAATC+AGG | + | chr3_2:86600866-86600885 | Msa0433940:intron | 30.0% |
| !! | ATTATTTTATAGGCAGTGTC+GGG | - | chr3_2:86600942-86600961 | None:intergenic | 30.0% |
| !! | TTTTTCAATCATTAGGTGAG+CGG | + | chr3_2:86600990-86601009 | Msa0433940:intron | 30.0% |
| ! | TTTCCAAATTTTATGCTGCT+AGG | + | chr3_2:86601276-86601295 | Msa0433940:intron | 30.0% |
| TCAAATGTGTGAAAAAGTAG+GGG | - | chr3_2:86601382-86601401 | None:intergenic | 30.0% | |
| GATCAAATGTGTGAAAAAGT+AGG | - | chr3_2:86601384-86601403 | None:intergenic | 30.0% | |
| TTCAAATTTCCAGAAATGAG+AGG | + | chr3_2:86601433-86601452 | Msa0433940:intron | 30.0% | |
| TCAAATTTCCAGAAATGAGA+GGG | + | chr3_2:86601434-86601453 | Msa0433940:intron | 30.0% | |
| CACATCAATTTAAGTGTTTC+TGG | - | chr3_2:86601625-86601644 | None:intergenic | 30.0% | |
| TAAATTGATGTGTGATGAAC+AGG | + | chr3_2:86601633-86601652 | Msa0433940:CDS | 30.0% | |
| !! | TACAATTTTGACATTGTTGG+GGG | + | chr3_2:86601871-86601890 | Msa0433940:intron | 30.0% |
| TCCTGTCTTAAATATACATG+TGG | + | chr3_2:86601912-86601931 | Msa0433940:intron | 30.0% | |
| ! | ACCACATGTATATTTAAGAC+AGG | - | chr3_2:86601916-86601935 | None:intergenic | 30.0% |
| !! | TTTTTCAGCTATGTCAAATG+AGG | - | chr3_2:86601963-86601982 | None:intergenic | 30.0% |
| ATGTGAATGAGACAAAAAGA+TGG | - | chr3_2:86602069-86602088 | None:intergenic | 30.0% | |
| AAGTGTAATGCATCATAAAG+AGG | - | chr3_2:86602178-86602197 | None:intergenic | 30.0% | |
| TGAAATTAAGAACGTCAAGT+TGG | + | chr3_2:86602248-86602267 | Msa0433940:intron | 30.0% | |
| GAAGAAAATGGTGATAAGTA+TGG | + | chr3_2:86602371-86602390 | Msa0433940:intron | 30.0% | |
| !!! | CCATTTACAGTTTTTTACCT+AGG | - | chr3_2:86602445-86602464 | None:intergenic | 30.0% |
| CCTAGGTAAAAAACTGTAAA+TGG | + | chr3_2:86602442-86602461 | Msa0433940:intron | 30.0% | |
| CTAATATAGAAAGATGTTCC+TGG | - | chr3_2:86602534-86602553 | None:intergenic | 30.0% | |
| TACAATGTATTGAGTGTGTT+GGG | - | chr3_2:86602640-86602659 | None:intergenic | 30.0% | |
| ATACAATGTATTGAGTGTGT+TGG | - | chr3_2:86602641-86602660 | None:intergenic | 30.0% | |
| TTTCCACAACTGAAAAATCA+AGG | + | chr3_2:86602744-86602763 | Msa0433940:intron | 30.0% | |
| AACACACTTAAAGAATACGA+AGG | - | chr3_2:86602973-86602992 | None:intergenic | 30.0% | |
| TTAATCGTCATTAAGGAGTA+AGG | - | chr3_2:86602998-86603017 | None:intergenic | 30.0% | |
| AGGAAATTAAAGATGAACTG+AGG | - | chr3_2:86603177-86603196 | None:intergenic | 30.0% | |
| ATATGGCTAAAGATGAAATG+AGG | - | chr3_2:86603197-86603216 | None:intergenic | 30.0% | |
| TCTTTAGCCATATGTTTGAT+TGG | + | chr3_2:86603204-86603223 | Msa0433940:intron | 30.0% | |
| GACAATGCATAAAATATGCA+AGG | - | chr3_2:86603277-86603296 | None:intergenic | 30.0% | |
| !!! | CACTATCACCATTGTTTTTT+AGG | - | chr3_2:86603569-86603588 | None:intergenic | 30.0% |
| CTAAAAAACAATGGTGATAG+TGG | + | chr3_2:86603567-86603586 | Msa0433940:exon | 30.0% | |
| TCCTCTTAGAAGATCAATAA+TGG | + | chr3_2:86604014-86604033 | Msa0433940:intron | 30.0% | |
| TCCATTATTGATCTTCTAAG+AGG | - | chr3_2:86604018-86604037 | None:intergenic | 30.0% | |
| !! | CCTTTAGTTAAAGAGTGTTA+CGG | + | chr3_2:86604274-86604293 | Msa0433940:intron | 30.0% |
| AAGTGACTAATATTGTCCAT+TGG | - | chr3_2:86604525-86604544 | None:intergenic | 30.0% | |
| AATATACAAGTAAGGTCACT+AGG | - | chr3_2:86604716-86604735 | None:intergenic | 30.0% | |
| TAGTGACCTTACTTGTATAT+TGG | + | chr3_2:86604715-86604734 | Msa0433940:intron | 30.0% | |
| ATGTGCATATAGTTAGATGT+TGG | + | chr3_2:86604790-86604809 | Msa0433940:three_prime_UTR | 30.0% | |
| !! | TAAGACCAAAAATGGGTTTT+CGG | - | chr3_2:86604979-86604998 | None:intergenic | 30.0% |
| ACATTCATATCATTTCATGC+CGG | + | chr3_2:86605045-86605064 | Msa0433940:three_prime_UTR | 30.0% | |
| TAACTAATCGGAAATTTGCG+CGG | + | chr3_2:86598167-86598186 | Msa0433940:CDS | 35.0% | |
| !!! | GTTTTTTTTTTGTGGTGTCC+GGG | - | chr3_2:86598729-86598748 | None:intergenic | 35.0% |
| !!! | GGTTTTTTTTTTGTGGTGTC+CGG | - | chr3_2:86598730-86598749 | None:intergenic | 35.0% |
| GTTGTTCGACCTAACAATTT+CGG | + | chr3_2:86598789-86598808 | Msa0433940:intron | 35.0% | |
| GTCAAAATGCCGAAATTGTT+AGG | - | chr3_2:86598801-86598820 | None:intergenic | 35.0% | |
| TTAAATGCAACACAATCCAC+AGG | - | chr3_2:86598837-86598856 | None:intergenic | 35.0% | |
| TGTGCGAAAAACATGATTCT+TGG | + | chr3_2:86599171-86599190 | Msa0433940:intron | 35.0% | |
| !! | GTACTAATGTAAAGAGCATC+AGG | + | chr3_2:86599225-86599244 | Msa0433940:intron | 35.0% |
| !!! | TATTTTGAGGCTGTGATCTA+GGG | - | chr3_2:86599688-86599707 | None:intergenic | 35.0% |
| !!! | TTATTTTGAGGCTGTGATCT+AGG | - | chr3_2:86599689-86599708 | None:intergenic | 35.0% |
| ! | TAGCTAATTTTGCAACTGCA+AGG | + | chr3_2:86599861-86599880 | Msa0433940:intron | 35.0% |
| GCAAAAACCAGAAGTTTCTA+TGG | + | chr3_2:86600039-86600058 | Msa0433940:CDS | 35.0% | |
| CTACTAACCATAGAAACTTC+TGG | - | chr3_2:86600049-86600068 | None:intergenic | 35.0% | |
| CTCCCTCATGTATTTATAGT+TGG | + | chr3_2:86600079-86600098 | Msa0433940:intron | 35.0% | |
| CGCCAACTATAAATACATGA+GGG | - | chr3_2:86600084-86600103 | None:intergenic | 35.0% | |
| ACGCCAACTATAAATACATG+AGG | - | chr3_2:86600085-86600104 | None:intergenic | 35.0% | |
| !! | ATTTTGAAGGAAGTGACGAA+TGG | + | chr3_2:86600353-86600372 | Msa0433940:CDS | 35.0% |
| ! | TAGTCTAGTTCAAATCAGAC+AGG | + | chr3_2:86600399-86600418 | Msa0433940:CDS | 35.0% |
| ! | TCTCTTCTTGGGTGTTATAT+GGG | - | chr3_2:86600479-86600498 | None:intergenic | 35.0% |
| ! | TTCTCTTCTTGGGTGTTATA+TGG | - | chr3_2:86600480-86600499 | None:intergenic | 35.0% |
| !!! | TCCTGGTTTTTTCTCTTCTT+GGG | - | chr3_2:86600490-86600509 | None:intergenic | 35.0% |
| !!! | TTCCTGGTTTTTTCTCTTCT+TGG | - | chr3_2:86600491-86600510 | None:intergenic | 35.0% |
| ATTTGCCAGAAAAACTTTCC+TGG | - | chr3_2:86600507-86600526 | None:intergenic | 35.0% | |
| CATTATTGATACGGTTTCGT+TGG | + | chr3_2:86600582-86600601 | Msa0433940:intron | 35.0% | |
| !! | CTAAGAAGTTGATAAATGCG+GGG | - | chr3_2:86600734-86600753 | None:intergenic | 35.0% |
| ! | AAGGAAATTGATGGTTCCAA+GGG | - | chr3_2:86600769-86600788 | None:intergenic | 35.0% |
| ! | GATTTTTCACATTCTGTGTC+TGG | - | chr3_2:86601100-86601119 | None:intergenic | 35.0% |
| ATTTGTCTTTGCAGCTTCTT+TGG | - | chr3_2:86601147-86601166 | None:intergenic | 35.0% | |
| ! | TTGATGCATCTATTTTGTGG+TGG | + | chr3_2:86601219-86601238 | Msa0433940:intron | 35.0% |
| TGTCCTAGCAGCATAAAATT+TGG | - | chr3_2:86601282-86601301 | None:intergenic | 35.0% | |
| CTTGGTGAACTGATTATTCT+TGG | + | chr3_2:86601805-86601824 | Msa0433940:CDS | 35.0% | |
| ! | TCTTGGTAGCATTAAAGGTT+AGG | + | chr3_2:86601822-86601841 | Msa0433940:intron | 35.0% |
| AGAAATCTATAGATGGGTCA+CGG | - | chr3_2:86602027-86602046 | None:intergenic | 35.0% | |
| AAAAAGATTCTTGGCTCATG+AGG | - | chr3_2:86602095-86602114 | None:intergenic | 35.0% | |
| TCACCATGCAAAAAGATTCT+TGG | - | chr3_2:86602104-86602123 | None:intergenic | 35.0% | |
| ! | AATCTTTTTGCATGGTGAGA+TGG | + | chr3_2:86602106-86602125 | Msa0433940:intron | 35.0% |
| ! | ATCTTTTTGCATGGTGAGAT+GGG | + | chr3_2:86602107-86602126 | Msa0433940:intron | 35.0% |
| TCTGAATCAAGAAGCAATTC+TGG | + | chr3_2:86602340-86602359 | Msa0433940:intron | 35.0% | |
| ! | CTTATCACCATTTTCTTCCT+TGG | - | chr3_2:86602369-86602388 | None:intergenic | 35.0% |
| TGAGGATAGTTGCTATAGTT+TGG | - | chr3_2:86602420-86602439 | None:intergenic | 35.0% | |
| !!! | CAGTTTTTTACCTAGGAATG+AGG | - | chr3_2:86602438-86602457 | None:intergenic | 35.0% |
| !! | AACCTTTAGGATAGTTATCC+AGG | + | chr3_2:86602513-86602532 | Msa0433940:intron | 35.0% |
| TTCCTGGATAACTATCCTAA+AGG | - | chr3_2:86602518-86602537 | None:intergenic | 35.0% | |
| !! | CTTCCTTGATTTTTCAGTTG+TGG | - | chr3_2:86602750-86602769 | None:intergenic | 35.0% |
| TGCATAAAATATGCAAGGTC+CGG | - | chr3_2:86603272-86603291 | None:intergenic | 35.0% | |
| ! | ATGTCCATTAGTTCTTGCAT+AGG | - | chr3_2:86603655-86603674 | None:intergenic | 35.0% |
| ATACTACTGATCTTTCGTTG+AGG | + | chr3_2:86603676-86603695 | Msa0433940:three_prime_UTR | 35.0% | |
| ! | GACTTCCTTTTTCTTTTGAC+AGG | + | chr3_2:86603748-86603767 | Msa0433940:three_prime_UTR | 35.0% |
| TCAGTCCTGTCAAAAGAAAA+AGG | - | chr3_2:86603756-86603775 | None:intergenic | 35.0% | |
| ! | TCTTTTGACAGGACTGAATT+TGG | + | chr3_2:86603759-86603778 | Msa0433940:three_prime_UTR | 35.0% |
| ! | AGCCAGGAATTTTTACTAGT+GGG | + | chr3_2:86603811-86603830 | Msa0433940:intron | 35.0% |
| CCGTAACACTCTTTAACTAA+AGG | - | chr3_2:86604277-86604296 | None:intergenic | 35.0% | |
| !! | GTGTGTTATTTGTGTGTTAG+TGG | + | chr3_2:86604572-86604591 | Msa0433940:intron | 35.0% |
| ! | TGTTATTTGTGTGTTAGTGG+TGG | + | chr3_2:86604575-86604594 | Msa0433940:intron | 35.0% |
| AATTCTCCAAAATCAAGTGC+AGG | + | chr3_2:86604650-86604669 | Msa0433940:intron | 35.0% | |
| AGCCATGTATAAGAGAATGT+GGG | - | chr3_2:86604682-86604701 | None:intergenic | 35.0% | |
| CGACGCTGGATTTAACTAAT+CGG | + | chr3_2:86598155-86598174 | Msa0433940:CDS | 40.0% | |
| ! | ATTTTCAGTCACCAGTGAGA+CGG | + | chr3_2:86598326-86598345 | Msa0433940:intron | 40.0% |
| TGAATCAGCGAAACTAACTG+CGG | - | chr3_2:86598436-86598455 | None:intergenic | 40.0% | |
| TGTTGATGCATATCGAACAC+CGG | + | chr3_2:86598954-86598973 | Msa0433940:intron | 40.0% | |
| CAGAAACATAAGGCTTATGC+TGG | + | chr3_2:86599098-86599117 | Msa0433940:intron | 40.0% | |
| ! | TTGGTGATTGCCTAGTTTAG+TGG | - | chr3_2:86599437-86599456 | None:intergenic | 40.0% |
| TCACAGCCTCAAAATAAAGC+AGG | + | chr3_2:86599692-86599711 | Msa0433940:CDS | 40.0% | |
| CACAGCCTCAAAATAAAGCA+GGG | + | chr3_2:86599693-86599712 | Msa0433940:CDS | 40.0% | |
| TCATTCCAATTGCCTCCTTT+CGG | - | chr3_2:86599970-86599989 | None:intergenic | 40.0% | |
| ATGTCTTGAACAAACTCAGG+AGG | + | chr3_2:86600195-86600214 | Msa0433940:intron | 40.0% | |
| AAAGGATGTCACTGCAAGAA+AGG | + | chr3_2:86600253-86600272 | Msa0433940:CDS | 40.0% | |
| GCAACTAATGCTGCCATTAA+TGG | + | chr3_2:86600421-86600440 | Msa0433940:CDS | 40.0% | |
| AAGTCCAACTGCTCCATTAA+TGG | - | chr3_2:86600437-86600456 | None:intergenic | 40.0% | |
| ATTAATGGAGCAGTTGGACT+TGG | + | chr3_2:86600436-86600455 | Msa0433940:CDS | 40.0% | |
| TGTTATATGGGTTCCAGAGA+TGG | - | chr3_2:86600467-86600486 | None:intergenic | 40.0% | |
| ACCCAAGAAGAGAAAAAACC+AGG | + | chr3_2:86600486-86600505 | Msa0433940:CDS | 40.0% | |
| !! | TAATGCAAAGAAGCACCTGT+TGG | - | chr3_2:86600567-86600586 | None:intergenic | 40.0% |
| ! | CAAGGAAATTGATGGTTCCA+AGG | - | chr3_2:86600770-86600789 | None:intergenic | 40.0% |
| GGAAGTAGCAAGGAAATTGA+TGG | - | chr3_2:86600778-86600797 | None:intergenic | 40.0% | |
| GATAAGGGAGATGAAGCTAT+AGG | - | chr3_2:86600900-86600919 | None:intergenic | 40.0% | |
| TTCATGTTGAAGGTCTGTGT+TGG | + | chr3_2:86601064-86601083 | Msa0433940:intron | 40.0% | |
| ! | TTTTCACATTCTGTGTCTGG+AGG | - | chr3_2:86601097-86601116 | None:intergenic | 40.0% |
| !!! | TGCAGGTTTTGACTAACACA+TGG | + | chr3_2:86601166-86601185 | Msa0433940:intron | 40.0% |
| ATGTGTGAAAAAGTAGGGGA+CGG | - | chr3_2:86601378-86601397 | None:intergenic | 40.0% | |
| TTTGCATGATTCTCCGAAAC+AGG | - | chr3_2:86601550-86601569 | None:intergenic | 40.0% | |
| !! | TTAAGTGTTTCTGGTGACAG+TGG | - | chr3_2:86601616-86601635 | None:intergenic | 40.0% |
| TTGATGTGTGATGAACAGGA+TGG | + | chr3_2:86601637-86601656 | Msa0433940:CDS | 40.0% | |
| TGATGTGTGATGAACAGGAT+GGG | + | chr3_2:86601638-86601657 | Msa0433940:CDS | 40.0% | |
| ! | GAACAGGATGGGATGTTTTT+CGG | + | chr3_2:86601649-86601668 | Msa0433940:CDS | 40.0% |
| !! | GATGGGATGTTTTTCGGTAA+TGG | + | chr3_2:86601655-86601674 | Msa0433940:intron | 40.0% |
| ! | TTCGGTAATGGTTCTGCAAA+TGG | + | chr3_2:86601667-86601686 | Msa0433940:intron | 40.0% |
| CAAAAGTCTTCCAACTCTGA+TGG | + | chr3_2:86601724-86601743 | Msa0433940:CDS | 40.0% | |
| GTTGGGGGAAAAATTAACTC+AGG | + | chr3_2:86601886-86601905 | Msa0433940:intron | 40.0% | |
| GAAATCTATAGATGGGTCAC+GGG | - | chr3_2:86602026-86602045 | None:intergenic | 40.0% | |
| ! | GAGCCAAGAATCTTTTTGCA+TGG | + | chr3_2:86602098-86602117 | Msa0433940:intron | 40.0% |
| ATCATAAAGAGGCCAGGTAT+GGG | - | chr3_2:86602167-86602186 | None:intergenic | 40.0% | |
| TAATGCATCATAAAGAGGCC+AGG | - | chr3_2:86602173-86602192 | None:intergenic | 40.0% | |
| GATGATGCTACAAAGTAAGC+TGG | - | chr3_2:86602218-86602237 | None:intergenic | 40.0% | |
| CACTGCTATGGGTGAATATA+TGG | - | chr3_2:86602292-86602311 | None:intergenic | 40.0% | |
| TAGCAACTATCCTCATTCCT+AGG | + | chr3_2:86602425-86602444 | Msa0433940:intron | 40.0% | |
| ! | CAAGGAAGCGCATTGTTATT+TGG | + | chr3_2:86602762-86602781 | Msa0433940:intron | 40.0% |
| AGATTGCAGAAGCAGAAAGT+GGG | + | chr3_2:86602887-86602906 | Msa0433940:intron | 40.0% | |
| TCTGTTCTGTCTCTCTCTTT+GGG | + | chr3_2:86602928-86602947 | Msa0433940:intron | 40.0% | |
| !!! | TATTTTTTTCCCAGAACGGC+TGG | + | chr3_2:86603128-86603147 | Msa0433940:intron | 40.0% |
| CATAAAATATGCAAGGTCCG+GGG | - | chr3_2:86603270-86603289 | None:intergenic | 40.0% | |
| GCATAAAATATGCAAGGTCC+GGG | - | chr3_2:86603271-86603290 | None:intergenic | 40.0% | |
| TATTATTCTTGCAGTTGCCC+AGG | - | chr3_2:86603401-86603420 | None:intergenic | 40.0% | |
| !! | TGATAGTGGTGCTGAAACTA+AGG | + | chr3_2:86603581-86603600 | Msa0433940:exon | 40.0% |
| ! | GATAGTGGTGCTGAAACTAA+GGG | + | chr3_2:86603582-86603601 | Msa0433940:exon | 40.0% |
| ! | ATAGTGGTGCTGAAACTAAG+GGG | + | chr3_2:86603583-86603602 | Msa0433940:exon | 40.0% |
| GCTACCTATGCAAGAACTAA+TGG | + | chr3_2:86603648-86603667 | Msa0433940:three_prime_UTR | 40.0% | |
| ATACACCAGATTACCACTTC+CGG | - | chr3_2:86603721-86603740 | None:intergenic | 40.0% | |
| GGACTGAATTTGGATTGTGA+AGG | + | chr3_2:86603769-86603788 | Msa0433940:three_prime_UTR | 40.0% | |
| ! | GAGCCAGGAATTTTTACTAG+TGG | + | chr3_2:86603810-86603829 | Msa0433940:intron | 40.0% |
| ! | GCCAGGAATTTTTACTAGTG+GGG | + | chr3_2:86603812-86603831 | Msa0433940:intron | 40.0% |
| ! | CCAGGAATTTTTACTAGTGG+GGG | + | chr3_2:86603813-86603832 | Msa0433940:intron | 40.0% |
| !! | ACTAGTGGGGGCATTATATA+TGG | + | chr3_2:86603825-86603844 | Msa0433940:intron | 40.0% |
| CACCACAAATAAGACTGAAG+AGG | + | chr3_2:86604550-86604569 | Msa0433940:intron | 40.0% | |
| !! | CACCTCTTCAGTCTTATTTG+TGG | - | chr3_2:86604555-86604574 | None:intergenic | 40.0% |
| TGCCCACATTCTCTTATACA+TGG | + | chr3_2:86604677-86604696 | Msa0433940:intron | 40.0% | |
| GAGCCATGTATAAGAGAATG+TGG | - | chr3_2:86604683-86604702 | None:intergenic | 40.0% | |
| AAGTAAGGTCACTAGGAACA+GGG | - | chr3_2:86604709-86604728 | None:intergenic | 40.0% | |
| TTGACTCAACTGCATGTAAC+TGG | + | chr3_2:86604855-86604874 | Msa0433940:three_prime_UTR | 40.0% | |
| ! | AGACTTGGTTATCACTAGAG+AGG | - | chr3_2:86604883-86604902 | None:intergenic | 40.0% |
| CTCTAGTGATAACCAAGTCT+TGG | + | chr3_2:86604883-86604902 | Msa0433940:three_prime_UTR | 40.0% | |
| TCCGAAATATAGCCGCTATA+AGG | + | chr3_2:86605009-86605028 | Msa0433940:three_prime_UTR | 40.0% | |
| GCCTTATAGCGGCTATATTT+CGG | - | chr3_2:86605013-86605032 | None:intergenic | 40.0% | |
| AGTACATGTGTGCCTTATAG+CGG | - | chr3_2:86605024-86605043 | None:intergenic | 40.0% | |
| ATCACCCTGATGTTGAATTC+CGG | - | chr3_2:86605067-86605086 | None:intergenic | 40.0% | |
| ! | ATGGTTTGTGACAGTGACTG+CGG | - | chr3_2:86598253-86598272 | None:intergenic | 45.0% |
| ! | TGTGGTGGTGATTGTTTCCA+CGG | - | chr3_2:86598352-86598371 | None:intergenic | 45.0% |
| GATTGAAAATGCGGCATCAC+CGG | - | chr3_2:86598406-86598425 | None:intergenic | 45.0% | |
| GAATCAGCGAAACTAACTGC+GGG | - | chr3_2:86598435-86598454 | None:intergenic | 45.0% | |
| TTACCAAAGCTAAGCTCACG+GGG | - | chr3_2:86598668-86598687 | None:intergenic | 45.0% | |
| CTTACCAAAGCTAAGCTCAC+GGG | - | chr3_2:86598669-86598688 | None:intergenic | 45.0% | |
| CCTTACCAAAGCTAAGCTCA+CGG | - | chr3_2:86598670-86598689 | None:intergenic | 45.0% | |
| CCAACACCTTCACTTGTGTA+TGG | - | chr3_2:86598751-86598770 | None:intergenic | 45.0% | |
| ! | CCATACACAAGTGAAGGTGT+TGG | + | chr3_2:86598748-86598767 | Msa0433940:intron | 45.0% |
| CATTCCAATTGCCTCCTTTC+GGG | - | chr3_2:86599969-86599988 | None:intergenic | 45.0% | |
| !! | TGCGGACTGCTTGCAATTTT+TGG | - | chr3_2:86600022-86600041 | None:intergenic | 45.0% |
| ! | ATTTTCAGAGCAGAGGACGT+TGG | - | chr3_2:86600311-86600330 | None:intergenic | 45.0% |
| ATATGGGTTCCAGAGATGGA+GGG | - | chr3_2:86600463-86600482 | None:intergenic | 45.0% | |
| TATATGGGTTCCAGAGATGG+AGG | - | chr3_2:86600464-86600483 | None:intergenic | 45.0% | |
| TACAATCGGATGTCAGAGCA+TGG | - | chr3_2:86600832-86600851 | None:intergenic | 45.0% | |
| AAGGAAGCTGACAGGGATAA+GGG | - | chr3_2:86600915-86600934 | None:intergenic | 45.0% | |
| AAAGGAAGCTGACAGGGATA+AGG | - | chr3_2:86600916-86600935 | None:intergenic | 45.0% | |
| GAAGCTGCAAAGACAAATGC+AGG | + | chr3_2:86601149-86601168 | Msa0433940:CDS | 45.0% | |
| TGTGTGAAAAAGTAGGGGAC+GGG | - | chr3_2:86601377-86601396 | None:intergenic | 45.0% | |
| AAATGAGAGGGAAAGCTGCT+AGG | + | chr3_2:86601446-86601465 | Msa0433940:CDS | 45.0% | |
| AGATGTTGCCAAGCCTGTTT+CGG | + | chr3_2:86601534-86601553 | Msa0433940:CDS | 45.0% | |
| ATGATTCTCCGAAACAGGCT+TGG | - | chr3_2:86601545-86601564 | None:intergenic | 45.0% | |
| AGCAGTGTATCCATCAGAGT+TGG | - | chr3_2:86601737-86601756 | None:intergenic | 45.0% | |
| CTGTTTATGCAGAGCAGGAA+AGG | + | chr3_2:86601755-86601774 | Msa0433940:CDS | 45.0% | |
| GCTTATCCTGACCAAGTTCA+GGG | + | chr3_2:86601777-86601796 | Msa0433940:CDS | 45.0% | |
| ACCAAGTTCAGGGATGTTCT+TGG | + | chr3_2:86601787-86601806 | Msa0433940:CDS | 45.0% | |
| ACCAAGAACATCCCTGAACT+TGG | - | chr3_2:86601791-86601810 | None:intergenic | 45.0% | |
| CATCATAAAGAGGCCAGGTA+TGG | - | chr3_2:86602168-86602187 | None:intergenic | 45.0% | |
| CAACAAGGTGACACTGCTAT+GGG | - | chr3_2:86602303-86602322 | None:intergenic | 45.0% | |
| ACAACAAGGTGACACTGCTA+TGG | - | chr3_2:86602304-86602323 | None:intergenic | 45.0% | |
| ! | GTCACCTTGTTGTCATGCAT+CGG | + | chr3_2:86602311-86602330 | Msa0433940:intron | 45.0% |
| TAAGCCGATGCATGACAACA+AGG | - | chr3_2:86602318-86602337 | None:intergenic | 45.0% | |
| AGAAGCAATTCTGGTCACCA+AGG | + | chr3_2:86602349-86602368 | Msa0433940:intron | 45.0% | |
| CTGGTCACCAAGGAAGAAAA+TGG | + | chr3_2:86602359-86602378 | Msa0433940:intron | 45.0% | |
| CACTTTCTGCTTCTGCAATC+TGG | - | chr3_2:86602888-86602907 | None:intergenic | 45.0% | |
| CAGATTGCAGAAGCAGAAAG+TGG | + | chr3_2:86602886-86602905 | Msa0433940:intron | 45.0% | |
| CTCTGTTCTGTCTCTCTCTT+TGG | + | chr3_2:86602927-86602946 | Msa0433940:intron | 45.0% | |
| CTGTTCTGTCTCTCTCTTTG+GGG | + | chr3_2:86602929-86602948 | Msa0433940:intron | 45.0% | |
| ! | TGAGCTTAGCTCAGTTGGTA+TGG | - | chr3_2:86603299-86603318 | None:intergenic | 45.0% |
| TTCTTGCATAGGTAGCCACT+GGG | - | chr3_2:86603644-86603663 | None:intergenic | 45.0% | |
| AACAACCGGAAGTGGTAATC+TGG | + | chr3_2:86603713-86603732 | Msa0433940:three_prime_UTR | 45.0% | |
| CCCCCACTAGTAAAAATTCC+TGG | - | chr3_2:86603816-86603835 | None:intergenic | 45.0% | |
| ! | TTGTGTGTTAGTGGTGGTGA+TGG | + | chr3_2:86604581-86604600 | Msa0433940:intron | 45.0% |
| !! | GTGATGGATGTGAGTCATAC+TGG | + | chr3_2:86604605-86604624 | Msa0433940:intron | 45.0% |
| ! | CACATGCCTGCACTTGATTT+TGG | - | chr3_2:86604659-86604678 | None:intergenic | 45.0% |
| AGTAAGGTCACTAGGAACAG+GGG | - | chr3_2:86604708-86604727 | None:intergenic | 45.0% | |
| CAAGTAAGGTCACTAGGAAC+AGG | - | chr3_2:86604710-86604729 | None:intergenic | 45.0% | |
| ACATGAGCAGCATCACTTAC+GGG | - | chr3_2:86604774-86604793 | None:intergenic | 45.0% | |
| CACATGAGCAGCATCACTTA+CGG | - | chr3_2:86604775-86604794 | None:intergenic | 45.0% | |
| GTGATAACCAAGTCTTGGCA+TGG | + | chr3_2:86604888-86604907 | Msa0433940:three_prime_UTR | 45.0% | |
| ! | GTCCACCGAAAACCCATTTT+TGG | + | chr3_2:86604971-86604990 | Msa0433940:three_prime_UTR | 45.0% |
| !! | GACCAAAAATGGGTTTTCGG+TGG | - | chr3_2:86604976-86604995 | None:intergenic | 45.0% |
| TCATGCCGGAATTCAACATC+AGG | + | chr3_2:86605059-86605078 | Msa0433940:three_prime_UTR | 45.0% | |
| CATGCCGGAATTCAACATCA+GGG | + | chr3_2:86605060-86605079 | Msa0433940:three_prime_UTR | 45.0% | |
| !!! | CTATTTAAAATTTATAATTT+AGG | - | chr3_2:86602845-86602864 | None:intergenic | 5.0% |
| TCGGAAATTTGCGCGGCAAT+TGG | + | chr3_2:86598174-86598193 | Msa0433940:CDS | 50.0% | |
| AAATGCATTTGCGCCTGAGG+AGG | - | chr3_2:86598304-86598323 | None:intergenic | 50.0% | |
| TCCTCAGGCGCAAATGCATT+TGG | + | chr3_2:86598303-86598322 | Msa0433940:CDS | 50.0% | |
| TCCAAATGCATTTGCGCCTG+AGG | - | chr3_2:86598307-86598326 | None:intergenic | 50.0% | |
| GGAAACAATCACCACCACAG+TGG | + | chr3_2:86598353-86598372 | Msa0433940:CDS | 50.0% | |
| ! | GGAAGCTTTGGTGTGGAGTA+CGG | - | chr3_2:86598466-86598485 | None:intergenic | 50.0% |
| GTACTCCACACCAAAGCTTC+CGG | + | chr3_2:86598465-86598484 | Msa0433940:CDS | 50.0% | |
| AACCTCTTCACCGGAAGCTT+TGG | - | chr3_2:86598478-86598497 | None:intergenic | 50.0% | |
| AGCGCTTGAAACCTCTTCAC+CGG | - | chr3_2:86598487-86598506 | None:intergenic | 50.0% | |
| TCACGGGGACACTTGTGTAT+GGG | - | chr3_2:86598653-86598672 | None:intergenic | 50.0% | |
| !! | CCGTGAGCTTAGCTTTGGTA+AGG | + | chr3_2:86598667-86598686 | Msa0433940:intron | 50.0% |
| AAAGGTCCGAGTTTCGAACC+CGG | + | chr3_2:86598708-86598727 | Msa0433940:intron | 50.0% | |
| TAGGTCGAACAACATGACCG+CGG | - | chr3_2:86598782-86598801 | None:intergenic | 50.0% | |
| !! | GGCATTTTGACGGTTGAGCT+AGG | + | chr3_2:86598810-86598829 | Msa0433940:intron | 50.0% |
| ! | CTCCATACGAAAAGCGTGTC+CGG | - | chr3_2:86598976-86598995 | None:intergenic | 50.0% |
| GAGCATCAGGGATGAAAGTC+TGG | + | chr3_2:86599238-86599257 | Msa0433940:intron | 50.0% | |
| GCAATCTGAGCATCATTCCG+AGG | + | chr3_2:86599366-86599385 | Msa0433940:intron | 50.0% | |
| GCTAGGAGACTCGTTTCTGA+AGG | - | chr3_2:86599666-86599685 | None:intergenic | 50.0% | |
| TACTGTGAGTGCTATGCAGC+TGG | + | chr3_2:86599884-86599903 | Msa0433940:CDS | 50.0% | |
| ACTGTGAGTGCTATGCAGCT+GGG | + | chr3_2:86599885-86599904 | Msa0433940:CDS | 50.0% | |
| GCAGCTGGGATCTATTGTGA+TGG | + | chr3_2:86599899-86599918 | Msa0433940:CDS | 50.0% | |
| GGAGGCAATTGGAATGACAC+TGG | + | chr3_2:86599973-86599992 | Msa0433940:CDS | 50.0% | |
| GCTGCCATTAATGGAGCAGT+TGG | + | chr3_2:86600430-86600449 | Msa0433940:CDS | 50.0% | |
| CATGACTGCTCAACACCAAC+AGG | + | chr3_2:86600549-86600568 | Msa0433940:CDS | 50.0% | |
| GGGAACAAAGGAAGCTGACA+GGG | - | chr3_2:86600922-86600941 | None:intergenic | 50.0% | |
| ! | ATAGGCAGTGTCGGGAACAA+AGG | - | chr3_2:86600934-86600953 | None:intergenic | 50.0% |
| GCAGCTTTCCCTCTCATTTC+TGG | - | chr3_2:86601445-86601464 | None:intergenic | 50.0% | |
| ! | CACTGCTGTTTATGCAGAGC+AGG | + | chr3_2:86601750-86601769 | Msa0433940:CDS | 50.0% |
| GGCTTATCCTGACCAAGTTC+AGG | + | chr3_2:86601776-86601795 | Msa0433940:CDS | 50.0% | |
| GAACATCCCTGAACTTGGTC+AGG | - | chr3_2:86601786-86601805 | None:intergenic | 50.0% | |
| CCAGGTATGGGTGTACTACA+TGG | - | chr3_2:86602155-86602174 | None:intergenic | 50.0% | |
| CCATGTAGTACACCCATACC+TGG | + | chr3_2:86602152-86602171 | Msa0433940:intron | 50.0% | |
| !!! | TTTTTTCCCAGAACGGCTGG+TGG | + | chr3_2:86603131-86603150 | Msa0433940:intron | 50.0% |
| !!! | CATTTTTTTGGTGGTGGCCG+AGG | + | chr3_2:86603238-86603257 | Msa0433940:intron | 50.0% |
| GTTCTTGCATAGGTAGCCAC+TGG | - | chr3_2:86603645-86603664 | None:intergenic | 50.0% | |
| TCTTTCGTTGAGGTTGCCTG+CGG | + | chr3_2:86603686-86603705 | Msa0433940:three_prime_UTR | 50.0% | |
| ! | TTGCCTGCGGATTGAACAAC+CGG | + | chr3_2:86603699-86603718 | Msa0433940:three_prime_UTR | 50.0% |
| GTGAAGGACTTCCTAGTCAG+TGG | + | chr3_2:86603785-86603804 | Msa0433940:intron | 50.0% | |
| AAGGACTTCCTAGTCAGTGG+CGG | + | chr3_2:86603788-86603807 | Msa0433940:intron | 50.0% | |
| !! | TAGTGGTGGTGATGGAGTGA+TGG | + | chr3_2:86604589-86604608 | Msa0433940:intron | 50.0% |
| TCTGTGTCCATGCCAAGACT+TGG | - | chr3_2:86604898-86604917 | None:intergenic | 50.0% | |
| GGCGACAATGTCAGGTACGA+CGG | - | chr3_2:86598223-86598242 | None:intergenic | 55.0% | |
| TGAAAATGCGGCATCACCGG+CGG | - | chr3_2:86598403-86598422 | None:intergenic | 55.0% | |
| GGGCGCGGTGATTGAAAATG+CGG | - | chr3_2:86598415-86598434 | None:intergenic | 55.0% | |
| ! | CTTCACCGGAAGCTTTGGTG+TGG | - | chr3_2:86598473-86598492 | None:intergenic | 55.0% |
| CACCAAAGCTTCCGGTGAAG+AGG | + | chr3_2:86598473-86598492 | Msa0433940:CDS | 55.0% | |
| CTCACGGGGACACTTGTGTA+TGG | - | chr3_2:86598654-86598673 | None:intergenic | 55.0% | |
| TGTCCCCGTGAGCTTAGCTT+TGG | + | chr3_2:86598662-86598681 | Msa0433940:intron | 55.0% | |
| TGGTGTCCGGGTTCGAAACT+CGG | - | chr3_2:86598717-86598736 | None:intergenic | 55.0% | |
| !! | AGGTGTTGGTGTTCGAACCG+CGG | + | chr3_2:86598762-86598781 | Msa0433940:intron | 55.0% |
| ! | CACCGGACACGCTTTTCGTA+TGG | + | chr3_2:86598971-86598990 | Msa0433940:intron | 55.0% |
| ! | TGAGGCTGTGATCTAGGGCT+AGG | - | chr3_2:86599683-86599702 | None:intergenic | 55.0% |
| GAACAATGAGGCTGCCCGAA+AGG | + | chr3_2:86599952-86599971 | Msa0433940:CDS | 55.0% | |
| CGGGAACAAAGGAAGCTGAC+AGG | - | chr3_2:86600923-86600942 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | - | chr3_2:86603304-86603323 | None:intergenic | 55.0% | |
| CCAACTGAGCTAAGCTCACG+AGG | + | chr3_2:86603301-86603320 | Msa0433940:intron | 55.0% | |
| CTGAGCTAAGCTCACGAGGA+CGG | + | chr3_2:86603305-86603324 | Msa0433940:intron | 55.0% | |
| TGCCAATTGCTCCATCCCAG+TGG | + | chr3_2:86603626-86603645 | Msa0433940:three_prime_UTR | 55.0% | |
| AGCCACTGGGATGGAGCAAT+TGG | - | chr3_2:86603631-86603650 | None:intergenic | 55.0% | |
| TGCATAGGTAGCCACTGGGA+TGG | - | chr3_2:86603640-86603659 | None:intergenic | 55.0% | |
| CTTCCGGTTGTTCAATCCGC+AGG | - | chr3_2:86603705-86603724 | None:intergenic | 55.0% | |
| ! | GCGGATTGAACAACCGGAAG+TGG | + | chr3_2:86603705-86603724 | Msa0433940:three_prime_UTR | 55.0% |
| AAGGTCACTAGGAACAGGGG+CGG | - | chr3_2:86604705-86604724 | None:intergenic | 55.0% | |
| GGAGAAGAGCGAAACGACGC+TGG | + | chr3_2:86598141-86598160 | Msa0433940:CDS | 60.0% | |
| TTGGATTTCGCCGCCGCATG+TGG | + | chr3_2:86598193-86598212 | Msa0433940:CDS | 60.0% | |
| GTACGACGGACCTCCACATG+CGG | - | chr3_2:86598209-86598228 | None:intergenic | 60.0% | |
| TGTGACAGTGACTGCGGCGT+CGG | - | chr3_2:86598247-86598266 | None:intergenic | 60.0% | |
| ! | CGGTGTCGGAGGTCGTAGAA+TGG | - | chr3_2:86598272-86598291 | None:intergenic | 60.0% |
| TCTACGACCTCCGACACCGT+CGG | + | chr3_2:86598273-86598292 | Msa0433940:CDS | 60.0% | |
| GGAGGCAAATCCGACGGTGT+CGG | - | chr3_2:86598286-86598305 | None:intergenic | 60.0% | |
| ACCGTCGGATTTGCCTCCTC+AGG | + | chr3_2:86598288-86598307 | Msa0433940:CDS | 60.0% | |
| GCCTGAGGAGGCAAATCCGA+CGG | - | chr3_2:86598292-86598311 | None:intergenic | 60.0% | |
| TGTTTCCACGGCCGTCTCAC+TGG | - | chr3_2:86598340-86598359 | None:intergenic | 60.0% | |
| GTTCTCTGCTGCTGCCACTG+TGG | - | chr3_2:86598370-86598389 | None:intergenic | 60.0% | |
| GAGAACGTCACAGTCTCCGC+CGG | + | chr3_2:86598384-86598403 | Msa0433940:CDS | 60.0% | |
| AGCGAAACTAACTGCGGGCG+CGG | - | chr3_2:86598430-86598449 | None:intergenic | 60.0% | |
| GACGGTTGAGCTAGGACCTG+TGG | + | chr3_2:86598818-86598837 | Msa0433940:intron | 60.0% | |
| CAATGAGGCTGCCCGAAAGG+AGG | + | chr3_2:86599955-86599974 | Msa0433940:CDS | 60.0% | |
| GCTGCCCGAAAGGAGGCAAT+TGG | + | chr3_2:86599962-86599981 | Msa0433940:CDS | 60.0% | |
| CAGAGCAGAGGACGTTGGCA+TGG | - | chr3_2:86600306-86600325 | None:intergenic | 60.0% | |
| GGACTTGGACCCTCCATCTC+TGG | + | chr3_2:86600451-86600470 | Msa0433940:CDS | 60.0% | |
| CAGGAACCACCAGCCGTTCT+GGG | - | chr3_2:86603140-86603159 | None:intergenic | 60.0% | |
| TCAGGAACCACCAGCCGTTC+TGG | - | chr3_2:86603141-86603160 | None:intergenic | 60.0% | |
| AAGGTCCGGGGTTCGAACCT+CGG | - | chr3_2:86603258-86603277 | None:intergenic | 60.0% | |
| GATTTCGCCGCCGCATGTGG+AGG | + | chr3_2:86598196-86598215 | Msa0433940:CDS | 65.0% | |
| ! | GCGTCGGTGGCGACAATGTC+AGG | - | chr3_2:86598231-86598250 | None:intergenic | 65.0% |
| ! | GGCAAATCCGACGGTGTCGG+AGG | - | chr3_2:86598283-86598302 | None:intergenic | 65.0% |
| AGTCACCAGTGAGACGGCCG+TGG | + | chr3_2:86598332-86598351 | Msa0433940:intron | 65.0% | |
| CTCTGCTGCTGCCACTGTGG+TGG | - | chr3_2:86598367-86598386 | None:intergenic | 65.0% | |
| ! | TCCTAGTCAGTGGCGGAGCC+AGG | + | chr3_2:86603795-86603814 | Msa0433940:intron | 65.0% |
| ! | TCCTGGCTCCGCCACTGACT+AGG | - | chr3_2:86603799-86603818 | None:intergenic | 65.0% |
| CGACGGACCTCCACATGCGG+CGG | - | chr3_2:86598206-86598225 | None:intergenic | 70.0% | |
| ! | GACAGTGACTGCGGCGTCGG+TGG | - | chr3_2:86598244-86598263 | None:intergenic | 70.0% |
| GGTGGCCGAGGTTCGAACCC+CGG | + | chr3_2:86603250-86603269 | Msa0433940:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 86598139 | 86605168 | 86598139 | ID=Msa0433940;Name=Msa0433940 |
| chr3_2 | mRNA | 86598139 | 86605168 | 86598139 | ID=Msa0433940-mRNA-1;Parent=Msa0433940;Name=Msa0433940-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.63|0.58|1|0.45|0.33|12|668|526 |
| chr3_2 | exon | 86598139 | 86598332 | 86598139 | ID=Msa0433940-mRNA-1:exon:25076;Parent=Msa0433940-mRNA-1 |
| chr3_2 | exon | 86598345 | 86598506 | 86598345 | ID=Msa0433940-mRNA-1:exon:25077;Parent=Msa0433940-mRNA-1 |
| chr3_2 | exon | 86599670 | 86599780 | 86599670 | ID=Msa0433940-mRNA-1:exon:25078;Parent=Msa0433940-mRNA-1 |
| chr3_2 | exon | 86599883 | 86600060 | 86599883 | ID=Msa0433940-mRNA-1:exon:25079;Parent=Msa0433940-mRNA-1 |
| chr3_2 | exon | 86600242 | 86600331 | 86600242 | ID=Msa0433940-mRNA-1:exon:25080;Parent=Msa0433940-mRNA-1 |
| chr3_2 | exon | 86600352 | 86600570 | 86600352 | ID=Msa0433940-mRNA-1:exon:25081;Parent=Msa0433940-mRNA-1 |
| chr3_2 | exon | 86600888 | 86600979 | 86600888 | ID=Msa0433940-mRNA-1:exon:25082;Parent=Msa0433940-mRNA-1 |
| chr3_2 | exon | 86601076 | 86601170 | 86601076 | ID=Msa0433940-mRNA-1:exon:25083;Parent=Msa0433940-mRNA-1 |
| chr3_2 | exon | 86601446 | 86601670 | 86601446 | ID=Msa0433940-mRNA-1:exon:25084;Parent=Msa0433940-mRNA-1 |
| chr3_2 | exon | 86601692 | 86601838 | 86601692 | ID=Msa0433940-mRNA-1:exon:25085;Parent=Msa0433940-mRNA-1 |
| chr3_2 | exon | 86603516 | 86603799 | 86603516 | ID=Msa0433940-mRNA-1:exon:25086;Parent=Msa0433940-mRNA-1 |
| chr3_2 | exon | 86604717 | 86605168 | 86604717 | ID=Msa0433940-mRNA-1:exon:25087;Parent=Msa0433940-mRNA-1 |
| chr3_2 | CDS | 86598139 | 86598332 | 86598139 | ID=Msa0433940-mRNA-1:cds;Parent=Msa0433940-mRNA-1 |
| chr3_2 | CDS | 86598345 | 86598506 | 86598345 | ID=Msa0433940-mRNA-1:cds;Parent=Msa0433940-mRNA-1 |
| chr3_2 | CDS | 86599670 | 86599780 | 86599670 | ID=Msa0433940-mRNA-1:cds;Parent=Msa0433940-mRNA-1 |
| chr3_2 | CDS | 86599883 | 86600060 | 86599883 | ID=Msa0433940-mRNA-1:cds;Parent=Msa0433940-mRNA-1 |
| chr3_2 | CDS | 86600242 | 86600331 | 86600242 | ID=Msa0433940-mRNA-1:cds;Parent=Msa0433940-mRNA-1 |
| chr3_2 | CDS | 86600352 | 86600570 | 86600352 | ID=Msa0433940-mRNA-1:cds;Parent=Msa0433940-mRNA-1 |
| chr3_2 | CDS | 86600888 | 86600979 | 86600888 | ID=Msa0433940-mRNA-1:cds;Parent=Msa0433940-mRNA-1 |
| chr3_2 | CDS | 86601076 | 86601170 | 86601076 | ID=Msa0433940-mRNA-1:cds;Parent=Msa0433940-mRNA-1 |
| chr3_2 | CDS | 86601446 | 86601670 | 86601446 | ID=Msa0433940-mRNA-1:cds;Parent=Msa0433940-mRNA-1 |
| chr3_2 | CDS | 86601692 | 86601838 | 86601692 | ID=Msa0433940-mRNA-1:cds;Parent=Msa0433940-mRNA-1 |
| chr3_2 | CDS | 86603516 | 86603583 | 86603516 | ID=Msa0433940-mRNA-1:cds;Parent=Msa0433940-mRNA-1 |
| chr3_2 | three_prime_UTR | 86603584 | 86603799 | 86603584 | ID=Msa0433940-mRNA-1:three_prime_utr;Parent=Msa0433940-mRNA-1 |
| chr3_2 | three_prime_UTR | 86604717 | 86605168 | 86604717 | ID=Msa0433940-mRNA-1:three_prime_utr;Parent=Msa0433940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
