Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435240 | XP_013462189.1 | 96.599 | 294 | 8 | 1 | 1 | 292 | 1 | 294 | 0.0 | 592 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435240 | sp|Q9FXH7|SRS7_ARATH | 43.440 | 343 | 134 | 15 | 1 | 286 | 1 | 340 | 3.31e-70 | 223 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435240 | A0A072V2G0 | 96.599 | 294 | 8 | 1 | 1 | 292 | 1 | 294 | 0.0 | 592 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0435240 | TF | SRS |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435240 | MtrunA17_Chr3g0142171 | 96.599 | 294 | 8 | 1 | 1 | 292 | 1 | 294 | 0.0 | 592 |
| Msa0435240 | MtrunA17_Chr1g0155791 | 54.369 | 309 | 91 | 14 | 25 | 288 | 32 | 335 | 1.52e-70 | 221 |
| Msa0435240 | MtrunA17_Chr8g0372461 | 52.459 | 244 | 88 | 9 | 57 | 286 | 97 | 326 | 3.07e-62 | 199 |
| Msa0435240 | MtrunA17_Chr5g0404781 | 43.072 | 332 | 136 | 17 | 1 | 289 | 1 | 322 | 2.66e-59 | 192 |
| Msa0435240 | MtrunA17_Chr4g0035591 | 46.203 | 158 | 62 | 5 | 81 | 236 | 17 | 153 | 4.16e-38 | 133 |
| Msa0435240 | MtrunA17_Chr5g0441921 | 46.203 | 158 | 69 | 4 | 84 | 227 | 124 | 279 | 3.08e-31 | 119 |
| Msa0435240 | MtrunA17_Chr3g0082511 | 41.250 | 160 | 68 | 7 | 84 | 224 | 134 | 286 | 5.99e-28 | 110 |
| Msa0435240 | MtrunA17_Chr8g0353111 | 37.705 | 183 | 88 | 5 | 84 | 242 | 124 | 304 | 2.27e-27 | 108 |
| Msa0435240 | MtrunA17_Chr2g0281741 | 63.158 | 38 | 14 | 0 | 81 | 118 | 147 | 184 | 1.08e-12 | 65.5 |
| Msa0435240 | MtrunA17_Chr0c01g0489181 | 57.895 | 38 | 16 | 0 | 81 | 118 | 64 | 101 | 2.93e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435240 | AT1G19790.2 | 43.440 | 343 | 134 | 15 | 1 | 286 | 1 | 340 | 3.37e-71 | 223 |
| Msa0435240 | AT1G19790.1 | 43.440 | 343 | 134 | 15 | 1 | 286 | 1 | 340 | 3.37e-71 | 223 |
| Msa0435240 | AT1G75520.1 | 41.047 | 363 | 119 | 16 | 1 | 288 | 1 | 343 | 2.85e-64 | 206 |
| Msa0435240 | AT5G66350.1 | 52.036 | 221 | 74 | 9 | 84 | 286 | 120 | 326 | 2.38e-57 | 187 |
| Msa0435240 | AT3G51060.1 | 52.193 | 228 | 82 | 11 | 82 | 286 | 142 | 365 | 5.49e-56 | 185 |
| Msa0435240 | AT5G66350.3 | 51.389 | 216 | 74 | 8 | 84 | 281 | 120 | 322 | 9.42e-56 | 183 |
| Msa0435240 | AT5G66350.2 | 51.869 | 214 | 72 | 8 | 84 | 279 | 120 | 320 | 1.02e-55 | 183 |
| Msa0435240 | AT2G18120.1 | 41.048 | 229 | 106 | 7 | 1 | 227 | 6 | 207 | 1.93e-44 | 150 |
| Msa0435240 | AT4G36260.1 | 47.514 | 181 | 39 | 5 | 78 | 225 | 88 | 245 | 2.48e-42 | 148 |
| Msa0435240 | AT2G18120.2 | 39.648 | 227 | 110 | 6 | 1 | 227 | 6 | 205 | 8.58e-42 | 144 |
| Msa0435240 | AT2G21400.2 | 48.052 | 154 | 61 | 4 | 75 | 224 | 1 | 139 | 8.62e-40 | 137 |
| Msa0435240 | AT2G21400.4 | 40.191 | 209 | 90 | 8 | 81 | 285 | 6 | 183 | 1.25e-39 | 137 |
| Msa0435240 | AT2G21400.3 | 48.667 | 150 | 51 | 4 | 75 | 224 | 1 | 124 | 1.92e-38 | 134 |
| Msa0435240 | AT2G21400.1 | 50.000 | 144 | 46 | 4 | 81 | 224 | 6 | 123 | 3.98e-38 | 133 |
| Msa0435240 | AT5G12330.1 | 44.375 | 160 | 68 | 4 | 84 | 224 | 112 | 269 | 1.57e-30 | 117 |
| Msa0435240 | AT5G12330.2 | 44.375 | 160 | 68 | 4 | 84 | 224 | 112 | 269 | 1.57e-30 | 117 |
| Msa0435240 | AT5G12330.4 | 45.000 | 160 | 67 | 5 | 84 | 224 | 199 | 356 | 2.92e-30 | 118 |
| Msa0435240 | AT5G33210.2 | 57.955 | 88 | 34 | 3 | 82 | 166 | 15 | 102 | 1.20e-25 | 98.6 |
| Msa0435240 | AT5G33210.1 | 58.621 | 87 | 33 | 3 | 82 | 165 | 50 | 136 | 4.89e-25 | 99.0 |
| Msa0435240 | AT3G54430.1 | 36.486 | 148 | 77 | 4 | 80 | 224 | 37 | 170 | 6.67e-22 | 90.9 |
| Msa0435240 | AT5G12330.3 | 82.609 | 46 | 8 | 0 | 84 | 129 | 112 | 157 | 8.94e-21 | 89.0 |
Find 74 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACCTATTGAAGGTTCTTC+TGG | 0.278915 | 3_2:-88374124 | Msa0435240:CDS |
| CACGTATTAATTAGGATGTT+GGG | 0.319065 | 3_2:+88373958 | None:intergenic |
| AGCTCCGCTTAATGCTTTCA+TGG | 0.345186 | 3_2:-88374005 | Msa0435240:CDS |
| GCAATACTGGTGTAAAGATT+TGG | 0.352201 | 3_2:+88374145 | None:intergenic |
| GACTAACACACGTATTAATT+AGG | 0.370588 | 3_2:+88373950 | None:intergenic |
| GATGAGTGTGAAAGAAGATT+TGG | 0.383103 | 3_2:-88375208 | Msa0435240:CDS |
| ACCTTCAATAGGTGCAATAC+TGG | 0.385502 | 3_2:+88374132 | None:intergenic |
| TTGAACATTTACAATGCGTT+TGG | 0.402855 | 3_2:-88375268 | Msa0435240:CDS |
| CCGTTTCGTCGTCGAGATCA+TGG | 0.410173 | 3_2:-88375001 | Msa0435240:CDS |
| AGAGATGTTGTTGTCGTTCA+CGG | 0.410405 | 3_2:+88375032 | None:intergenic |
| GTGGTAGGGATGGGTGGTTG+AGG | 0.413319 | 3_2:+88374923 | None:intergenic |
| CCACCAGAGGTGAGTTCTCC+AGG | 0.416959 | 3_2:-88374292 | Msa0435240:CDS |
| ACAACAAAGGGTTAGAGATA+TGG | 0.425274 | 3_2:-88375303 | Msa0435240:CDS |
| TGCTACTTAGGGTTGGAGTT+GGG | 0.432629 | 3_2:-88374322 | Msa0435240:intron |
| ACCAGTATTGCACCTATTGA+AGG | 0.434447 | 3_2:-88374133 | Msa0435240:CDS |
| TGGTAGGGATGGGTGGTTGA+GGG | 0.435264 | 3_2:+88374924 | None:intergenic |
| GGGATGGGTGGTTGAGGGCA+AGG | 0.438435 | 3_2:+88374929 | None:intergenic |
| AAACACATGTTAAGAGTACT+TGG | 0.440077 | 3_2:-88375072 | Msa0435240:CDS |
| ACACGTATTAATTAGGATGT+TGG | 0.450226 | 3_2:+88373957 | None:intergenic |
| TACGCGCATTGCTCATGATC+TGG | 0.452659 | 3_2:+88374229 | None:intergenic |
| CTGCTACTTAGGGTTGGAGT+TGG | 0.452789 | 3_2:-88374323 | Msa0435240:intron |
| AAAGGAATTCTCTATGATCA+AGG | 0.458943 | 3_2:-88374172 | Msa0435240:CDS |
| CGTTCACGGCGTTTAGCAGC+GGG | 0.464082 | 3_2:+88375046 | None:intergenic |
| GTTCTCCAGGAGTAACGTTT+CGG | 0.464963 | 3_2:-88374279 | Msa0435240:CDS |
| TGGTTGAGGGCAAGGAAGAG+AGG | 0.470671 | 3_2:+88374937 | None:intergenic |
| CTTAATGCTTTCATGGCAGC+TGG | 0.471683 | 3_2:-88373998 | Msa0435240:CDS |
| TGAGCAATGCGCGTATCAAA+CGG | 0.474401 | 3_2:-88374221 | Msa0435240:CDS |
| CCACCAGAAGAACCTTCAAT+AGG | 0.475713 | 3_2:+88374121 | None:intergenic |
| ATTTACAATGCGTTTGGAGC+GGG | 0.476042 | 3_2:-88375262 | Msa0435240:CDS |
| AGTAAAGTGAAGGGTCGAAA+TGG | 0.489246 | 3_2:+88374029 | None:intergenic |
| CCATGATCTCGACGACGAAA+CGG | 0.500595 | 3_2:+88375001 | None:intergenic |
| AATAATTATATACCTGTGGT+AGG | 0.506589 | 3_2:+88374908 | None:intergenic |
| TGAGTACTGCAACAAATGGC+TGG | 0.507692 | 3_2:-88375421 | None:intergenic |
| ACACACCGAAACGTTACTCC+TGG | 0.517806 | 3_2:+88374274 | None:intergenic |
| AGGAGATCTATAACAACAAA+GGG | 0.518436 | 3_2:-88375315 | Msa0435240:CDS |
| CCTATTGAAGGTTCTTCTGG+TGG | 0.522897 | 3_2:-88374121 | Msa0435240:CDS |
| TATCAAACGGCTGTGAACAT+AGG | 0.523500 | 3_2:-88374208 | Msa0435240:CDS |
| TAGTGGAGGAATGAATTGTC+AGG | 0.528718 | 3_2:-88375173 | Msa0435240:CDS |
| TTATATACCTGTGGTAGGGA+TGG | 0.531535 | 3_2:+88374913 | None:intergenic |
| AAAGAAGATTTGGTATAATG+AGG | 0.534847 | 3_2:-88375198 | Msa0435240:CDS |
| ACGTATTAATTAGGATGTTG+GGG | 0.540164 | 3_2:+88373959 | None:intergenic |
| ATTGAAGGTTCTTCTGGTGG+AGG | 0.544276 | 3_2:-88374118 | Msa0435240:CDS |
| ATACCTGTGGTAGGGATGGG+TGG | 0.544823 | 3_2:+88374917 | None:intergenic |
| CCTGGAGAACTCACCTCTGG+TGG | 0.547209 | 3_2:+88374292 | None:intergenic |
| GAACTTGTTGCAAGAGTCGA+GGG | 0.552988 | 3_2:-88375105 | Msa0435240:CDS |
| TCGTTCACGGCGTTTAGCAG+CGG | 0.564542 | 3_2:+88375045 | None:intergenic |
| GTGTGTGAGAGTGAGTTCAT+TGG | 0.567712 | 3_2:-88374257 | Msa0435240:CDS |
| TATATACCTGTGGTAGGGAT+GGG | 0.567730 | 3_2:+88374914 | None:intergenic |
| CAAACGGCTGTGAACATAGG+AGG | 0.569957 | 3_2:-88374205 | Msa0435240:CDS |
| ATAATTATATACCTGTGGTA+GGG | 0.570372 | 3_2:+88374909 | None:intergenic |
| ACTCCTGGAGAACTCACCTC+TGG | 0.575897 | 3_2:+88374289 | None:intergenic |
| ATCATGGAGACAATTACAAA+CGG | 0.577832 | 3_2:-88374985 | Msa0435240:CDS |
| CGGCACACAGAAATTAATCA+AGG | 0.578142 | 3_2:-88374965 | Msa0435240:CDS |
| AGCGGAGCTGAGTAAAGTGA+AGG | 0.586546 | 3_2:+88374019 | None:intergenic |
| CATTTACAATGCGTTTGGAG+CGG | 0.587822 | 3_2:-88375263 | Msa0435240:CDS |
| TTTGGTATAATGAGGCGTAG+TGG | 0.591379 | 3_2:-88375190 | Msa0435240:CDS |
| ATACTGGTGTAAAGATTTGG+AGG | 0.592879 | 3_2:+88374148 | None:intergenic |
| CAACCACCCATCCCTACCAC+AGG | 0.593236 | 3_2:-88374920 | Msa0435240:intron |
| GAGGAGATCTATAACAACAA+AGG | 0.594462 | 3_2:-88375316 | Msa0435240:CDS |
| AGAACTTGTTGCAAGAGTCG+AGG | 0.598909 | 3_2:-88375106 | Msa0435240:CDS |
| AGAATTATTGTTAAGAAACG+AGG | 0.601425 | 3_2:-88375335 | Msa0435240:CDS |
| GTCATGAAATCAAGTTGTTG+AGG | 0.608390 | 3_2:+88374085 | None:intergenic |
| TAAATGTTCAAGCTTTGTTG+TGG | 0.618391 | 3_2:+88375280 | None:intergenic |
| CTGGAGAACTCACCTCTGGT+GGG | 0.629708 | 3_2:+88374293 | None:intergenic |
| GGTATAATGAGGCGTAGTGG+AGG | 0.645542 | 3_2:-88375187 | Msa0435240:CDS |
| AACACATGTTAAGAGTACTT+GGG | 0.648062 | 3_2:-88375071 | Msa0435240:CDS |
| AAACGGCTGTGAACATAGGA+GGG | 0.648226 | 3_2:-88374204 | Msa0435240:CDS |
| GAGTACTGCAACAAATGGCT+GGG | 0.651398 | 3_2:-88375420 | None:intergenic |
| GCGGAGCTGAGTAAAGTGAA+GGG | 0.659711 | 3_2:+88374020 | None:intergenic |
| GCTGCCATGAAAGCATTAAG+CGG | 0.661845 | 3_2:+88374001 | None:intergenic |
| GTTGGGACAATTCCCACCAG+AGG | 0.679398 | 3_2:-88374305 | Msa0435240:CDS |
| CGTATTAATTAGGATGTTGG+GGG | 0.679578 | 3_2:+88373960 | None:intergenic |
| GTGAGAGTGAGTTCATTGGA+CGG | 0.712874 | 3_2:-88374253 | Msa0435240:CDS |
| GGAATGAATTGTCAGGACTG+TGG | 0.748727 | 3_2:-88375166 | Msa0435240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACATACATATATATATAT+AGG | - | chr3_2:88374530-88374549 | Msa0435240:intron | 10.0% |
| !!! | TTTTTTTATAGTTATAATGA+TGG | - | chr3_2:88374954-88374973 | Msa0435240:CDS | 10.0% |
| !! | ATACATACATATATATATAT+AGG | - | chr3_2:88374530-88374549 | Msa0435240:intron | 10.0% |
| !!! | TTTTTTTATAGTTATAATGA+TGG | - | chr3_2:88374954-88374973 | Msa0435240:CDS | 10.0% |
| !! | TTACAATAATTATATACCTG+TGG | + | chr3_2:88374469-88374488 | None:intergenic | 20.0% |
| !! | TTCATGATTGATGTATATAT+AGG | - | chr3_2:88374647-88374666 | Msa0435240:intron | 20.0% |
| !! | TTACAATAATTATATACCTG+TGG | + | chr3_2:88374469-88374488 | None:intergenic | 20.0% |
| !! | TTCATGATTGATGTATATAT+AGG | - | chr3_2:88374647-88374666 | Msa0435240:intron | 20.0% |
| ! | AGAATTATTGTTAAGAAACG+AGG | - | chr3_2:88374035-88374054 | Msa0435240:CDS | 25.0% |
| !! | AAAGAAGATTTGGTATAATG+AGG | - | chr3_2:88374172-88374191 | Msa0435240:CDS | 25.0% |
| ! | ATAATTATATACCTGTGGTA+GGG | + | chr3_2:88374464-88374483 | None:intergenic | 25.0% |
| ! | AATAATTATATACCTGTGGT+AGG | + | chr3_2:88374465-88374484 | None:intergenic | 25.0% |
| ! | AAATCATCGTATACTAGTTA+AGG | + | chr3_2:88374770-88374789 | None:intergenic | 25.0% |
| !! | GTATACGATGATTTTGAATA+TGG | - | chr3_2:88374776-88374795 | Msa0435240:intron | 25.0% |
| ! | AAAACAGTAACAAGTTATGA+TGG | + | chr3_2:88374831-88374850 | None:intergenic | 25.0% |
| !! | GTTTTACTTAAAAACAGTGA+TGG | + | chr3_2:88374885-88374904 | None:intergenic | 25.0% |
| !! | AATGATGGAAATACTAATAG+AGG | - | chr3_2:88374969-88374988 | Msa0435240:CDS | 25.0% |
| ! | AGAATTATTGTTAAGAAACG+AGG | - | chr3_2:88374035-88374054 | Msa0435240:CDS | 25.0% |
| !! | AAAGAAGATTTGGTATAATG+AGG | - | chr3_2:88374172-88374191 | Msa0435240:CDS | 25.0% |
| ! | ATAATTATATACCTGTGGTA+GGG | + | chr3_2:88374464-88374483 | None:intergenic | 25.0% |
| ! | AATAATTATATACCTGTGGT+AGG | + | chr3_2:88374465-88374484 | None:intergenic | 25.0% |
| ! | AAATCATCGTATACTAGTTA+AGG | + | chr3_2:88374770-88374789 | None:intergenic | 25.0% |
| !! | GTATACGATGATTTTGAATA+TGG | - | chr3_2:88374776-88374795 | Msa0435240:intron | 25.0% |
| ! | AAAACAGTAACAAGTTATGA+TGG | + | chr3_2:88374831-88374850 | None:intergenic | 25.0% |
| !! | GTTTTACTTAAAAACAGTGA+TGG | + | chr3_2:88374885-88374904 | None:intergenic | 25.0% |
| !! | AATGATGGAAATACTAATAG+AGG | - | chr3_2:88374969-88374988 | Msa0435240:CDS | 25.0% |
| !! | GTTATTTTGTCTAGGTAGAA+AGG | - | chr3_2:88373972-88373991 | Msa0435240:CDS | 30.0% |
| AGGAGATCTATAACAACAAA+GGG | - | chr3_2:88374055-88374074 | Msa0435240:CDS | 30.0% | |
| !! | TAAATGTTCAAGCTTTGTTG+TGG | + | chr3_2:88374093-88374112 | None:intergenic | 30.0% |
| TTGAACATTTACAATGCGTT+TGG | - | chr3_2:88374102-88374121 | Msa0435240:CDS | 30.0% | |
| !! | AAACACATGTTAAGAGTACT+TGG | - | chr3_2:88374298-88374317 | Msa0435240:CDS | 30.0% |
| !! | AACACATGTTAAGAGTACTT+GGG | - | chr3_2:88374299-88374318 | Msa0435240:CDS | 30.0% |
| ATCATGGAGACAATTACAAA+CGG | - | chr3_2:88374385-88374404 | Msa0435240:intron | 30.0% | |
| TATGTATGTATAGCTAGCTA+GGG | + | chr3_2:88374521-88374540 | None:intergenic | 30.0% | |
| ATATGTATGTATAGCTAGCT+AGG | + | chr3_2:88374522-88374541 | None:intergenic | 30.0% | |
| GTATAGCTGAAAATTCTTCA+TGG | + | chr3_2:88374674-88374693 | None:intergenic | 30.0% | |
| !!! | CAATGCATTTTTTCATTAGC+AGG | + | chr3_2:88374710-88374729 | None:intergenic | 30.0% |
| AGGTCTAGTCATATATATAG+AGG | + | chr3_2:88374750-88374769 | None:intergenic | 30.0% | |
| ! | TTAAAAACAGTGATGGAGAA+TGG | + | chr3_2:88374878-88374897 | None:intergenic | 30.0% |
| TGACGAACTCATCAAATTAT+TGG | - | chr3_2:88374905-88374924 | Msa0435240:intron | 30.0% | |
| !! | AATTTTCTTGACTGCTACTT+AGG | - | chr3_2:88375036-88375055 | Msa0435240:CDS | 30.0% |
| !! | ATTTTCTTGACTGCTACTTA+GGG | - | chr3_2:88375037-88375056 | Msa0435240:CDS | 30.0% |
| AAAGGAATTCTCTATGATCA+AGG | - | chr3_2:88375198-88375217 | Msa0435240:CDS | 30.0% | |
| !! | GTTATTTTGTCTAGGTAGAA+AGG | - | chr3_2:88373972-88373991 | Msa0435240:CDS | 30.0% |
| AGGAGATCTATAACAACAAA+GGG | - | chr3_2:88374055-88374074 | Msa0435240:CDS | 30.0% | |
| !! | TAAATGTTCAAGCTTTGTTG+TGG | + | chr3_2:88374093-88374112 | None:intergenic | 30.0% |
| TTGAACATTTACAATGCGTT+TGG | - | chr3_2:88374102-88374121 | Msa0435240:CDS | 30.0% | |
| !! | AAACACATGTTAAGAGTACT+TGG | - | chr3_2:88374298-88374317 | Msa0435240:CDS | 30.0% |
| !! | AACACATGTTAAGAGTACTT+GGG | - | chr3_2:88374299-88374318 | Msa0435240:CDS | 30.0% |
| ATCATGGAGACAATTACAAA+CGG | - | chr3_2:88374385-88374404 | Msa0435240:intron | 30.0% | |
| TATGTATGTATAGCTAGCTA+GGG | + | chr3_2:88374521-88374540 | None:intergenic | 30.0% | |
| ATATGTATGTATAGCTAGCT+AGG | + | chr3_2:88374522-88374541 | None:intergenic | 30.0% | |
| GTATAGCTGAAAATTCTTCA+TGG | + | chr3_2:88374674-88374693 | None:intergenic | 30.0% | |
| !!! | CAATGCATTTTTTCATTAGC+AGG | + | chr3_2:88374710-88374729 | None:intergenic | 30.0% |
| AGGTCTAGTCATATATATAG+AGG | + | chr3_2:88374750-88374769 | None:intergenic | 30.0% | |
| ! | TTAAAAACAGTGATGGAGAA+TGG | + | chr3_2:88374878-88374897 | None:intergenic | 30.0% |
| TGACGAACTCATCAAATTAT+TGG | - | chr3_2:88374905-88374924 | Msa0435240:intron | 30.0% | |
| !! | AATTTTCTTGACTGCTACTT+AGG | - | chr3_2:88375036-88375055 | Msa0435240:CDS | 30.0% |
| !! | ATTTTCTTGACTGCTACTTA+GGG | - | chr3_2:88375037-88375056 | Msa0435240:CDS | 30.0% |
| AAAGGAATTCTCTATGATCA+AGG | - | chr3_2:88375198-88375217 | Msa0435240:CDS | 30.0% | |
| GAGGAGATCTATAACAACAA+AGG | - | chr3_2:88374054-88374073 | Msa0435240:CDS | 35.0% | |
| ACAACAAAGGGTTAGAGATA+TGG | - | chr3_2:88374067-88374086 | Msa0435240:CDS | 35.0% | |
| GATGAGTGTGAAAGAAGATT+TGG | - | chr3_2:88374162-88374181 | Msa0435240:CDS | 35.0% | |
| !! | CAAGTTATGATGGATAACCA+TGG | + | chr3_2:88374821-88374840 | None:intergenic | 35.0% |
| AATGGAAAAGAAGATAGCGA+GGG | + | chr3_2:88374860-88374879 | None:intergenic | 35.0% | |
| ATACTGGTGTAAAGATTTGG+AGG | + | chr3_2:88375225-88375244 | None:intergenic | 35.0% | |
| GCAATACTGGTGTAAAGATT+TGG | + | chr3_2:88375228-88375247 | None:intergenic | 35.0% | |
| ! | GTCATGAAATCAAGTTGTTG+AGG | + | chr3_2:88375288-88375307 | None:intergenic | 35.0% |
| GAGGAGATCTATAACAACAA+AGG | - | chr3_2:88374054-88374073 | Msa0435240:CDS | 35.0% | |
| ACAACAAAGGGTTAGAGATA+TGG | - | chr3_2:88374067-88374086 | Msa0435240:CDS | 35.0% | |
| GATGAGTGTGAAAGAAGATT+TGG | - | chr3_2:88374162-88374181 | Msa0435240:CDS | 35.0% | |
| !! | CAAGTTATGATGGATAACCA+TGG | + | chr3_2:88374821-88374840 | None:intergenic | 35.0% |
| AATGGAAAAGAAGATAGCGA+GGG | + | chr3_2:88374860-88374879 | None:intergenic | 35.0% | |
| ATACTGGTGTAAAGATTTGG+AGG | + | chr3_2:88375225-88375244 | None:intergenic | 35.0% | |
| GCAATACTGGTGTAAAGATT+TGG | + | chr3_2:88375228-88375247 | None:intergenic | 35.0% | |
| ! | GTCATGAAATCAAGTTGTTG+AGG | + | chr3_2:88375288-88375307 | None:intergenic | 35.0% |
| !! | ATGGCTGGGTTATTTTGTCT+AGG | - | chr3_2:88373964-88373983 | Msa0435240:CDS | 40.0% |
| CATTTACAATGCGTTTGGAG+CGG | - | chr3_2:88374107-88374126 | Msa0435240:CDS | 40.0% | |
| ! | ATTTACAATGCGTTTGGAGC+GGG | - | chr3_2:88374108-88374127 | Msa0435240:CDS | 40.0% |
| TTTGGTATAATGAGGCGTAG+TGG | - | chr3_2:88374180-88374199 | Msa0435240:CDS | 40.0% | |
| TAGTGGAGGAATGAATTGTC+AGG | - | chr3_2:88374197-88374216 | Msa0435240:CDS | 40.0% | |
| AGAGATGTTGTTGTCGTTCA+CGG | + | chr3_2:88374341-88374360 | None:intergenic | 40.0% | |
| CGGCACACAGAAATTAATCA+AGG | - | chr3_2:88374405-88374424 | Msa0435240:intron | 40.0% | |
| TATATACCTGTGGTAGGGAT+GGG | + | chr3_2:88374459-88374478 | None:intergenic | 40.0% | |
| TTATATACCTGTGGTAGGGA+TGG | + | chr3_2:88374460-88374479 | None:intergenic | 40.0% | |
| TTTGAATATGGAACCCCACT+TGG | - | chr3_2:88374788-88374807 | Msa0435240:intron | 40.0% | |
| GAATGGAAAAGAAGATAGCG+AGG | + | chr3_2:88374861-88374880 | None:intergenic | 40.0% | |
| TATCAAACGGCTGTGAACAT+AGG | - | chr3_2:88375162-88375181 | Msa0435240:CDS | 40.0% | |
| !! | ATAGGAGGGCATGTTTTCAA+AGG | - | chr3_2:88375180-88375199 | Msa0435240:CDS | 40.0% |
| ACCAGTATTGCACCTATTGA+AGG | - | chr3_2:88375237-88375256 | Msa0435240:CDS | 40.0% | |
| ACCTTCAATAGGTGCAATAC+TGG | + | chr3_2:88375241-88375260 | None:intergenic | 40.0% | |
| AGTAAAGTGAAGGGTCGAAA+TGG | + | chr3_2:88375344-88375363 | None:intergenic | 40.0% | |
| !! | ATGGCTGGGTTATTTTGTCT+AGG | - | chr3_2:88373964-88373983 | Msa0435240:CDS | 40.0% |
| CATTTACAATGCGTTTGGAG+CGG | - | chr3_2:88374107-88374126 | Msa0435240:CDS | 40.0% | |
| ! | ATTTACAATGCGTTTGGAGC+GGG | - | chr3_2:88374108-88374127 | Msa0435240:CDS | 40.0% |
| TTTGGTATAATGAGGCGTAG+TGG | - | chr3_2:88374180-88374199 | Msa0435240:CDS | 40.0% | |
| TAGTGGAGGAATGAATTGTC+AGG | - | chr3_2:88374197-88374216 | Msa0435240:CDS | 40.0% | |
| AGAGATGTTGTTGTCGTTCA+CGG | + | chr3_2:88374341-88374360 | None:intergenic | 40.0% | |
| CGGCACACAGAAATTAATCA+AGG | - | chr3_2:88374405-88374424 | Msa0435240:intron | 40.0% | |
| TATATACCTGTGGTAGGGAT+GGG | + | chr3_2:88374459-88374478 | None:intergenic | 40.0% | |
| TTATATACCTGTGGTAGGGA+TGG | + | chr3_2:88374460-88374479 | None:intergenic | 40.0% | |
| TTTGAATATGGAACCCCACT+TGG | - | chr3_2:88374788-88374807 | Msa0435240:intron | 40.0% | |
| GAATGGAAAAGAAGATAGCG+AGG | + | chr3_2:88374861-88374880 | None:intergenic | 40.0% | |
| TATCAAACGGCTGTGAACAT+AGG | - | chr3_2:88375162-88375181 | Msa0435240:CDS | 40.0% | |
| !! | ATAGGAGGGCATGTTTTCAA+AGG | - | chr3_2:88375180-88375199 | Msa0435240:CDS | 40.0% |
| ACCAGTATTGCACCTATTGA+AGG | - | chr3_2:88375237-88375256 | Msa0435240:CDS | 40.0% | |
| ACCTTCAATAGGTGCAATAC+TGG | + | chr3_2:88375241-88375260 | None:intergenic | 40.0% | |
| AGTAAAGTGAAGGGTCGAAA+TGG | + | chr3_2:88375344-88375363 | None:intergenic | 40.0% | |
| GGAATGAATTGTCAGGACTG+TGG | - | chr3_2:88374204-88374223 | Msa0435240:CDS | 45.0% | |
| !! | AGAACTTGTTGCAAGAGTCG+AGG | - | chr3_2:88374264-88374283 | Msa0435240:CDS | 45.0% |
| !! | GAACTTGTTGCAAGAGTCGA+GGG | - | chr3_2:88374265-88374284 | Msa0435240:CDS | 45.0% |
| ATATGGAACCCCACTTGGAT+TGG | - | chr3_2:88374793-88374812 | Msa0435240:intron | 45.0% | |
| ACCATGGATCCAATCCAAGT+GGG | + | chr3_2:88374805-88374824 | None:intergenic | 45.0% | |
| AACCATGGATCCAATCCAAG+TGG | + | chr3_2:88374806-88374825 | None:intergenic | 45.0% | |
| ! | TCTTGACTGCTACTTAGGGT+TGG | - | chr3_2:88375041-88375060 | Msa0435240:CDS | 45.0% |
| ! | TGCTACTTAGGGTTGGAGTT+GGG | - | chr3_2:88375048-88375067 | Msa0435240:CDS | 45.0% |
| GTTCTCCAGGAGTAACGTTT+CGG | - | chr3_2:88375091-88375110 | Msa0435240:CDS | 45.0% | |
| GTGTGTGAGAGTGAGTTCAT+TGG | - | chr3_2:88375113-88375132 | Msa0435240:CDS | 45.0% | |
| GTGAGAGTGAGTTCATTGGA+CGG | - | chr3_2:88375117-88375136 | Msa0435240:CDS | 45.0% | |
| TGAGCAATGCGCGTATCAAA+CGG | - | chr3_2:88375149-88375168 | Msa0435240:CDS | 45.0% | |
| AAACGGCTGTGAACATAGGA+GGG | - | chr3_2:88375166-88375185 | Msa0435240:CDS | 45.0% | |
| GCACCTATTGAAGGTTCTTC+TGG | - | chr3_2:88375246-88375265 | Msa0435240:CDS | 45.0% | |
| CCACCAGAAGAACCTTCAAT+AGG | + | chr3_2:88375252-88375271 | None:intergenic | 45.0% | |
| CCTATTGAAGGTTCTTCTGG+TGG | - | chr3_2:88375249-88375268 | Msa0435240:CDS | 45.0% | |
| ATTGAAGGTTCTTCTGGTGG+AGG | - | chr3_2:88375252-88375271 | Msa0435240:CDS | 45.0% | |
| AGCTCCGCTTAATGCTTTCA+TGG | - | chr3_2:88375365-88375384 | Msa0435240:CDS | 45.0% | |
| !! | GCTGCCATGAAAGCATTAAG+CGG | + | chr3_2:88375372-88375391 | None:intergenic | 45.0% |
| CTTAATGCTTTCATGGCAGC+TGG | - | chr3_2:88375372-88375391 | Msa0435240:CDS | 45.0% | |
| GGAATGAATTGTCAGGACTG+TGG | - | chr3_2:88374204-88374223 | Msa0435240:CDS | 45.0% | |
| !! | AGAACTTGTTGCAAGAGTCG+AGG | - | chr3_2:88374264-88374283 | Msa0435240:CDS | 45.0% |
| !! | GAACTTGTTGCAAGAGTCGA+GGG | - | chr3_2:88374265-88374284 | Msa0435240:CDS | 45.0% |
| ATATGGAACCCCACTTGGAT+TGG | - | chr3_2:88374793-88374812 | Msa0435240:intron | 45.0% | |
| ACCATGGATCCAATCCAAGT+GGG | + | chr3_2:88374805-88374824 | None:intergenic | 45.0% | |
| AACCATGGATCCAATCCAAG+TGG | + | chr3_2:88374806-88374825 | None:intergenic | 45.0% | |
| ! | TCTTGACTGCTACTTAGGGT+TGG | - | chr3_2:88375041-88375060 | Msa0435240:CDS | 45.0% |
| ! | TGCTACTTAGGGTTGGAGTT+GGG | - | chr3_2:88375048-88375067 | Msa0435240:CDS | 45.0% |
| GTTCTCCAGGAGTAACGTTT+CGG | - | chr3_2:88375091-88375110 | Msa0435240:CDS | 45.0% | |
| GTGTGTGAGAGTGAGTTCAT+TGG | - | chr3_2:88375113-88375132 | Msa0435240:CDS | 45.0% | |
| GTGAGAGTGAGTTCATTGGA+CGG | - | chr3_2:88375117-88375136 | Msa0435240:CDS | 45.0% | |
| TGAGCAATGCGCGTATCAAA+CGG | - | chr3_2:88375149-88375168 | Msa0435240:CDS | 45.0% | |
| AAACGGCTGTGAACATAGGA+GGG | - | chr3_2:88375166-88375185 | Msa0435240:CDS | 45.0% | |
| GCACCTATTGAAGGTTCTTC+TGG | - | chr3_2:88375246-88375265 | Msa0435240:CDS | 45.0% | |
| CCACCAGAAGAACCTTCAAT+AGG | + | chr3_2:88375252-88375271 | None:intergenic | 45.0% | |
| CCTATTGAAGGTTCTTCTGG+TGG | - | chr3_2:88375249-88375268 | Msa0435240:CDS | 45.0% | |
| ATTGAAGGTTCTTCTGGTGG+AGG | - | chr3_2:88375252-88375271 | Msa0435240:CDS | 45.0% | |
| AGCTCCGCTTAATGCTTTCA+TGG | - | chr3_2:88375365-88375384 | Msa0435240:CDS | 45.0% | |
| !! | GCTGCCATGAAAGCATTAAG+CGG | + | chr3_2:88375372-88375391 | None:intergenic | 45.0% |
| CTTAATGCTTTCATGGCAGC+TGG | - | chr3_2:88375372-88375391 | Msa0435240:CDS | 45.0% | |
| GGTATAATGAGGCGTAGTGG+AGG | - | chr3_2:88374183-88374202 | Msa0435240:CDS | 50.0% | |
| CCATGATCTCGACGACGAAA+CGG | + | chr3_2:88374372-88374391 | None:intergenic | 50.0% | |
| CCATGGATCCAATCCAAGTG+GGG | + | chr3_2:88374804-88374823 | None:intergenic | 50.0% | |
| ! | CTGCTACTTAGGGTTGGAGT+TGG | - | chr3_2:88375047-88375066 | Msa0435240:CDS | 50.0% |
| ACACACCGAAACGTTACTCC+TGG | + | chr3_2:88375099-88375118 | None:intergenic | 50.0% | |
| TACGCGCATTGCTCATGATC+TGG | + | chr3_2:88375144-88375163 | None:intergenic | 50.0% | |
| CAAACGGCTGTGAACATAGG+AGG | - | chr3_2:88375165-88375184 | Msa0435240:CDS | 50.0% | |
| GCGGAGCTGAGTAAAGTGAA+GGG | + | chr3_2:88375353-88375372 | None:intergenic | 50.0% | |
| AGCGGAGCTGAGTAAAGTGA+AGG | + | chr3_2:88375354-88375373 | None:intergenic | 50.0% | |
| GGTATAATGAGGCGTAGTGG+AGG | - | chr3_2:88374183-88374202 | Msa0435240:CDS | 50.0% | |
| CCATGATCTCGACGACGAAA+CGG | + | chr3_2:88374372-88374391 | None:intergenic | 50.0% | |
| CCATGGATCCAATCCAAGTG+GGG | + | chr3_2:88374804-88374823 | None:intergenic | 50.0% | |
| ! | CTGCTACTTAGGGTTGGAGT+TGG | - | chr3_2:88375047-88375066 | Msa0435240:CDS | 50.0% |
| ACACACCGAAACGTTACTCC+TGG | + | chr3_2:88375099-88375118 | None:intergenic | 50.0% | |
| TACGCGCATTGCTCATGATC+TGG | + | chr3_2:88375144-88375163 | None:intergenic | 50.0% | |
| CAAACGGCTGTGAACATAGG+AGG | - | chr3_2:88375165-88375184 | Msa0435240:CDS | 50.0% | |
| GCGGAGCTGAGTAAAGTGAA+GGG | + | chr3_2:88375353-88375372 | None:intergenic | 50.0% | |
| AGCGGAGCTGAGTAAAGTGA+AGG | + | chr3_2:88375354-88375373 | None:intergenic | 50.0% | |
| TCGTTCACGGCGTTTAGCAG+CGG | + | chr3_2:88374328-88374347 | None:intergenic | 55.0% | |
| CCGTTTCGTCGTCGAGATCA+TGG | - | chr3_2:88374369-88374388 | Msa0435240:intron | 55.0% | |
| TGGTTGAGGGCAAGGAAGAG+AGG | + | chr3_2:88374436-88374455 | None:intergenic | 55.0% | |
| TGGTAGGGATGGGTGGTTGA+GGG | + | chr3_2:88374449-88374468 | None:intergenic | 55.0% | |
| ATACCTGTGGTAGGGATGGG+TGG | + | chr3_2:88374456-88374475 | None:intergenic | 55.0% | |
| ! | CCCCACTTGGATTGGATCCA+TGG | - | chr3_2:88374801-88374820 | Msa0435240:intron | 55.0% |
| GTTGGGACAATTCCCACCAG+AGG | - | chr3_2:88375065-88375084 | Msa0435240:CDS | 55.0% | |
| CTGGAGAACTCACCTCTGGT+GGG | + | chr3_2:88375080-88375099 | None:intergenic | 55.0% | |
| ACTCCTGGAGAACTCACCTC+TGG | + | chr3_2:88375084-88375103 | None:intergenic | 55.0% | |
| TCGTTCACGGCGTTTAGCAG+CGG | + | chr3_2:88374328-88374347 | None:intergenic | 55.0% | |
| CCGTTTCGTCGTCGAGATCA+TGG | - | chr3_2:88374369-88374388 | Msa0435240:intron | 55.0% | |
| TGGTTGAGGGCAAGGAAGAG+AGG | + | chr3_2:88374436-88374455 | None:intergenic | 55.0% | |
| TGGTAGGGATGGGTGGTTGA+GGG | + | chr3_2:88374449-88374468 | None:intergenic | 55.0% | |
| ATACCTGTGGTAGGGATGGG+TGG | + | chr3_2:88374456-88374475 | None:intergenic | 55.0% | |
| ! | CCCCACTTGGATTGGATCCA+TGG | - | chr3_2:88374801-88374820 | Msa0435240:intron | 55.0% |
| GTTGGGACAATTCCCACCAG+AGG | - | chr3_2:88375065-88375084 | Msa0435240:CDS | 55.0% | |
| CTGGAGAACTCACCTCTGGT+GGG | + | chr3_2:88375080-88375099 | None:intergenic | 55.0% | |
| ACTCCTGGAGAACTCACCTC+TGG | + | chr3_2:88375084-88375103 | None:intergenic | 55.0% | |
| CGTTCACGGCGTTTAGCAGC+GGG | + | chr3_2:88374327-88374346 | None:intergenic | 60.0% | |
| GTGGTAGGGATGGGTGGTTG+AGG | + | chr3_2:88374450-88374469 | None:intergenic | 60.0% | |
| CAACCACCCATCCCTACCAC+AGG | - | chr3_2:88374450-88374469 | Msa0435240:intron | 60.0% | |
| CCTGGAGAACTCACCTCTGG+TGG | + | chr3_2:88375081-88375100 | None:intergenic | 60.0% | |
| CCACCAGAGGTGAGTTCTCC+AGG | - | chr3_2:88375078-88375097 | Msa0435240:CDS | 60.0% | |
| CGTTCACGGCGTTTAGCAGC+GGG | + | chr3_2:88374327-88374346 | None:intergenic | 60.0% | |
| GTGGTAGGGATGGGTGGTTG+AGG | + | chr3_2:88374450-88374469 | None:intergenic | 60.0% | |
| CAACCACCCATCCCTACCAC+AGG | - | chr3_2:88374450-88374469 | Msa0435240:intron | 60.0% | |
| CCTGGAGAACTCACCTCTGG+TGG | + | chr3_2:88375081-88375100 | None:intergenic | 60.0% | |
| CCACCAGAGGTGAGTTCTCC+AGG | - | chr3_2:88375078-88375097 | Msa0435240:CDS | 60.0% | |
| GGGATGGGTGGTTGAGGGCA+AGG | + | chr3_2:88374444-88374463 | None:intergenic | 65.0% | |
| GGGATGGGTGGTTGAGGGCA+AGG | + | chr3_2:88374444-88374463 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 88373964 | 88375428 | 88373964 | ID=Msa0435240;Name=Msa0435240 |
| chr3_2 | mRNA | 88373964 | 88375428 | 88373964 | ID=Msa0435240-mRNA-1;Parent=Msa0435240;Name=Msa0435240-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0|1|1|1|2|0|292 |
| chr3_2 | exon | 88374921 | 88375428 | 88374921 | ID=Msa0435240-mRNA-1:exon:25945;Parent=Msa0435240-mRNA-1 |
| chr3_2 | exon | 88373964 | 88374334 | 88373964 | ID=Msa0435240-mRNA-1:exon:25944;Parent=Msa0435240-mRNA-1 |
| chr3_2 | CDS | 88374921 | 88375428 | 88374921 | ID=Msa0435240-mRNA-1:cds;Parent=Msa0435240-mRNA-1 |
| chr3_2 | CDS | 88373964 | 88374334 | 88373964 | ID=Msa0435240-mRNA-1:cds;Parent=Msa0435240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
