AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0435260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0435260 MtrunA17_Chr3g0142191 100.000 229 0 0 1 229 1 229 4.86e-175 479
Msa0435260 MtrunA17_Chr5g0404951 54.091 220 95 4 1 215 1 219 1.38e-75 228
Msa0435260 MtrunA17_Chr3g0125241 45.775 142 77 0 1 142 26 167 1.86e-43 145
Msa0435260 MtrunA17_Chr1g0159661 43.662 142 80 0 1 142 1 142 3.38e-39 133
Msa0435260 MtrunA17_Chr2g0279821 41.463 164 80 3 1 155 1 157 3.01e-35 125
Msa0435260 MtrunA17_Chr8g0351041 43.125 160 81 3 1 153 1 157 2.73e-33 117
Msa0435260 MtrunA17_Chr4g0049541 37.313 201 102 4 1 192 1 186 8.81e-33 118
Msa0435260 MtrunA17_Chr2g0284911 39.801 201 102 5 1 187 16 211 1.10e-32 119
Msa0435260 MtrunA17_Chr8g0380021 42.424 165 89 3 1 162 17 178 1.49e-32 118
Msa0435260 MtrunA17_Chr4g0057151 42.581 155 78 3 1 148 1 151 1.67e-32 117
Msa0435260 MtrunA17_Chr8g0351051 35.443 237 125 7 1 228 1 218 2.96e-32 117
Msa0435260 MtrunA17_Chr8g0351031 41.250 160 84 3 1 153 1 157 1.43e-31 115
Msa0435260 MtrunA17_Chr3g0097101 38.857 175 91 4 1 166 16 183 1.47e-31 115
Msa0435260 MtrunA17_Chr3g0122251 41.615 161 86 2 1 153 1 161 2.20e-31 115
Msa0435260 MtrunA17_Chr7g0246431 41.818 165 81 4 1 156 1 159 3.43e-31 114
Msa0435260 MtrunA17_Chr4g0061691 42.353 170 91 3 1 165 1 168 4.99e-31 114
Msa0435260 MtrunA17_Chr7g0220121 39.205 176 89 4 1 166 1 168 7.20e-31 114
Msa0435260 MtrunA17_Chr3g0077501 37.576 165 82 3 1 153 1 156 1.02e-30 113
Msa0435260 MtrunA17_Chr5g0420081 39.429 175 96 3 1 168 1 172 2.84e-30 112
Msa0435260 MtrunA17_Chr5g0411691 38.854 157 77 3 1 147 1 148 6.36e-30 111
Msa0435260 MtrunA17_Chr7g0220111 42.405 158 85 3 1 153 1 157 1.86e-29 110
Msa0435260 MtrunA17_Chr8g0366231 40.854 164 79 5 1 153 1 157 2.78e-29 109
Msa0435260 MtrunA17_Chr6g0474371 38.235 170 98 2 1 164 1 169 4.45e-29 107
Msa0435260 MtrunA17_Chr1g0164791 35.404 161 96 1 1 153 1 161 4.56e-29 108
Msa0435260 MtrunA17_Chr6g0455511 41.139 158 87 3 1 153 1 157 1.29e-28 108
Msa0435260 MtrunA17_Chr5g0420091 40.252 159 88 3 1 153 1 158 1.08e-27 105
Msa0435260 MtrunA17_Chr5g0412461 41.436 181 87 5 1 170 1 173 1.47e-27 105
Msa0435260 MtrunA17_Chr4g0018421 35.632 174 104 4 1 168 1 172 4.01e-26 100
Msa0435260 MtrunA17_Chr4g0061671 38.411 151 89 2 1 148 1 150 6.63e-26 99.4
Msa0435260 MtrunA17_Chr5g0412271 42.073 164 75 5 1 152 1 156 1.08e-25 100
Msa0435260 MtrunA17_Chr4g0049901 38.462 169 77 4 1 153 27 184 7.32e-25 98.2
Msa0435260 MtrunA17_Chr5g0427401 39.752 161 82 4 1 153 1 154 1.52e-24 97.1
Msa0435260 MtrunA17_Chr1g0204111 33.529 170 105 2 1 164 17 184 3.61e-24 96.7
Msa0435260 MtrunA17_Chr1g0173161 68.333 60 19 0 1 60 1 60 4.11e-24 91.7
Msa0435260 MtrunA17_Chr5g0427921 65.000 60 21 0 1 60 1 60 6.16e-24 90.5
Msa0435260 MtrunA17_Chr4g0020221 38.994 159 86 3 1 151 1 156 7.25e-23 93.2
Msa0435260 MtrunA17_Chr2g0308251 64.407 59 21 0 1 59 1 59 1.78e-22 87.8
Msa0435260 MtrunA17_Chr7g0246381 62.903 62 23 0 1 62 1 62 5.90e-22 85.9
Msa0435260 MtrunA17_Chr8g0377561 64.912 57 20 0 1 57 1 57 7.06e-22 86.7
Msa0435260 MtrunA17_Chr4g0044071 63.158 57 21 0 1 57 1 57 1.01e-19 81.3
Msa0435260 MtrunA17_Chr5g0425191 63.158 57 21 0 1 57 1 57 1.14e-19 80.9
Msa0435260 MtrunA17_Chr3g0134451 42.400 125 62 4 1 122 1 118 2.22e-19 85.1
Msa0435260 MtrunA17_Chr8g0379021 40.157 127 60 3 2 127 12 123 9.39e-19 80.5
Msa0435260 MtrunA17_Chr1g0166611 60.000 55 22 0 13 67 17 71 1.41e-17 76.3
Msa0435260 MtrunA17_Chr8g0357771 36.691 139 81 3 1 133 1 138 3.35e-17 76.6
Msa0435260 MtrunA17_Chr2g0333981 35.443 158 81 7 1 143 11 162 3.21e-16 73.6
Msa0435260 MtrunA17_Chr4g0052061 33.333 135 69 4 1 135 1 114 1.50e-15 71.6
Msa0435260 MtrunA17_Chr5g0417661 56.604 53 23 0 1 53 56 108 2.49e-15 70.1
Msa0435260 MtrunA17_Chr1g0175611 48.387 62 32 0 1 62 1 62 5.67e-15 70.1
Msa0435260 MtrunA17_Chr4g0060841 56.604 53 23 0 1 53 1 53 5.68e-15 72.8
Msa0435260 MtrunA17_Chr8g0376821 48.387 62 32 0 1 62 1 62 6.16e-15 70.5
Msa0435260 MtrunA17_Chr4g0018951 39.669 121 55 5 14 121 24 139 8.56e-15 69.7
Msa0435260 MtrunA17_Chr3g0089141 33.835 133 74 3 2 133 9 128 1.07e-14 70.9
Msa0435260 MtrunA17_Chr1g0208581 49.206 63 32 0 2 64 9 71 1.11e-14 70.5
Msa0435260 MtrunA17_Chr2g0325971 34.400 125 71 4 2 119 9 129 1.45e-14 70.5
Msa0435260 MtrunA17_Chr1g0208561 47.619 63 33 0 2 64 9 71 1.55e-14 70.1
Msa0435260 MtrunA17_Chr1g0169761 48.387 62 32 0 1 62 1 62 1.76e-14 68.9
Msa0435260 MtrunA17_Chr2g0317451 28.249 177 99 4 2 154 9 181 1.82e-14 70.1
Msa0435260 MtrunA17_Chr2g0317481 28.249 177 99 4 2 154 9 181 1.95e-14 70.1
Msa0435260 MtrunA17_Chr8g0356071 47.222 72 36 1 1 70 1 72 2.10e-14 68.6
Msa0435260 MtrunA17_Chr1g0180591 46.774 62 33 0 1 62 1 62 2.37e-14 68.9
Msa0435260 MtrunA17_Chr1g0175601 46.875 64 34 0 1 64 1 64 2.62e-14 68.6
Msa0435260 MtrunA17_Chr5g0419601 48.438 64 33 0 1 64 8 71 5.39e-14 68.9
Msa0435260 MtrunA17_Chr3g0099421 54.237 59 27 0 2 60 34 92 6.07e-14 68.9
Msa0435260 MtrunA17_Chr1g0149391 47.143 70 35 1 2 71 9 76 7.73e-14 68.6
Msa0435260 MtrunA17_Chr2g0292791 47.143 70 35 1 2 71 9 76 8.80e-14 68.2
Msa0435260 MtrunA17_Chr1g0187361 47.619 63 33 0 2 64 9 71 1.13e-13 68.2
Msa0435260 MtrunA17_Chr4g0052081 41.892 74 41 1 1 72 1 74 1.14e-13 67.0
Msa0435260 MtrunA17_Chr3g0099411 45.714 70 36 1 2 71 9 76 1.21e-13 67.8
Msa0435260 MtrunA17_Chr1g0206701 47.619 63 33 0 2 64 9 71 1.29e-13 67.8
Msa0435260 MtrunA17_Chr4g0074101 46.667 60 32 0 1 60 1 60 1.53e-13 67.0
Msa0435260 MtrunA17_Chr1g0206721 45.714 70 36 1 2 71 9 76 1.59e-13 67.8
Msa0435260 MtrunA17_Chr1g0188671 47.619 63 33 0 2 64 47 109 1.68e-13 68.2
Msa0435260 MtrunA17_Chr8g0355091 47.619 63 33 0 2 64 9 71 2.02e-13 67.4
Msa0435260 MtrunA17_Chr5g0422941 47.619 63 33 0 2 64 9 71 2.81e-13 67.0
Msa0435260 MtrunA17_Chr5g0422421 45.714 70 36 1 2 71 9 76 3.50e-13 66.6
Msa0435260 MtrunA17_Chr3g0111841 49.123 57 29 0 8 64 2 58 4.45e-13 62.4
Msa0435260 MtrunA17_Chr1g0206991 44.286 70 37 1 2 71 9 76 4.72e-13 65.5
Msa0435260 MtrunA17_Chr2g0300421 44.444 63 35 0 2 64 9 71 1.17e-12 63.9
Msa0435260 MtrunA17_Chr6g0457851 27.815 151 95 4 1 138 11 160 5.41e-12 64.3
Msa0435260 MtrunA17_Chr3g0119901 40.845 71 40 1 1 71 8 76 6.04e-12 62.8
Msa0435260 MtrunA17_Chr2g0300441 46.667 60 32 0 5 64 12 71 7.44e-12 62.8
Msa0435260 MtrunA17_Chr3g0085241 42.188 64 37 0 1 64 40 103 1.88e-11 62.0
Msa0435260 MtrunA17_Chr1g0206691 26.506 166 98 3 11 154 1 164 2.19e-11 61.2
Msa0435260 MtrunA17_Chr3g0089151 39.189 74 43 1 2 75 9 80 2.95e-11 59.3
Msa0435260 MtrunA17_Chr8g0345001 30.216 139 76 4 3 121 19 156 3.22e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0435260 AT3G54340.1 56.897 232 95 2 1 228 1 231 7.58e-94 275
Msa0435260 AT5G20240.1 36.019 211 120 2 1 210 1 197 5.36e-40 137
Msa0435260 AT5G20240.2 43.662 142 80 0 1 142 1 142 1.07e-37 129
Msa0435260 AT4G18960.1 35.537 242 134 7 2 228 18 252 5.02e-36 128
Msa0435260 AT5G60910.1 44.068 177 91 3 1 171 1 175 3.94e-35 125
Msa0435260 AT4G11880.2 43.750 160 79 4 1 153 1 156 1.08e-33 119
Msa0435260 AT4G11880.3 43.750 160 79 4 1 153 1 156 1.08e-33 119
Msa0435260 AT5G13790.2 44.767 172 81 5 1 166 1 164 1.44e-33 122
Msa0435260 AT4G11880.4 46.000 150 70 4 1 143 1 146 2.73e-33 120
Msa0435260 AT4G11880.1 46.000 150 70 4 1 143 1 146 2.73e-33 120
Msa0435260 AT2G45660.2 42.515 167 71 3 1 153 1 156 2.90e-33 118
Msa0435260 AT2G45660.1 42.515 167 71 3 1 153 1 156 1.63e-32 117
Msa0435260 AT2G45650.1 34.188 234 132 6 1 228 1 218 4.31e-32 117
Msa0435260 AT4G22950.2 41.290 155 79 4 1 148 1 150 5.85e-32 115
Msa0435260 AT4G09960.1 38.650 163 83 3 1 153 1 156 8.14e-32 116
Msa0435260 AT4G09960.6 38.650 163 83 3 1 153 2 157 8.43e-32 116
Msa0435260 AT5G13790.1 43.195 169 85 4 1 166 1 161 1.09e-31 117
Msa0435260 AT4G09960.5 38.650 163 83 3 1 153 11 166 1.24e-31 116
Msa0435260 AT4G09960.3 38.650 163 83 3 1 153 27 182 1.80e-31 116
Msa0435260 AT4G22950.3 41.290 155 79 4 1 148 1 150 1.92e-31 115
Msa0435260 AT4G22950.1 41.290 155 79 4 1 148 1 150 1.92e-31 115
Msa0435260 AT3G57230.2 43.333 150 65 3 1 139 1 141 2.51e-31 112
Msa0435260 AT3G57230.1 40.361 166 79 3 1 155 1 157 3.17e-31 115
Msa0435260 AT3G57230.4 40.361 166 79 3 1 155 1 157 3.17e-31 115
Msa0435260 AT5G51870.1 38.547 179 94 7 1 169 1 173 4.65e-31 114
Msa0435260 AT4G37940.1 39.759 166 80 3 1 155 1 157 6.88e-31 114
Msa0435260 AT2G42830.2 39.130 161 87 3 1 154 16 172 1.50e-30 113
Msa0435260 AT2G42830.1 39.375 160 86 3 1 153 16 171 1.59e-30 113
Msa0435260 AT5G23260.2 36.410 195 119 2 1 190 1 195 1.66e-30 113
Msa0435260 AT5G51870.4 39.053 169 90 6 1 162 1 163 1.75e-30 112
Msa0435260 AT5G51870.3 38.983 177 92 7 1 167 11 181 1.88e-30 112
Msa0435260 AT4G09960.4 38.415 164 84 3 1 154 96 252 2.05e-30 115
Msa0435260 AT5G23260.4 36.410 195 119 2 1 190 17 211 2.68e-30 113
Msa0435260 AT4G09960.2 40.940 149 71 3 1 139 1 142 3.42e-30 112
Msa0435260 AT3G58780.1 38.750 160 87 3 1 153 16 171 4.52e-30 112
Msa0435260 AT3G58780.5 38.750 160 87 3 1 153 22 177 4.80e-30 112
Msa0435260 AT5G51870.2 39.490 157 77 6 1 146 1 150 6.14e-30 110
Msa0435260 AT3G61120.1 35.909 220 113 6 1 210 1 202 1.06e-29 111
Msa0435260 AT4G37940.4 40.244 164 77 4 1 152 1 155 1.06e-29 110
Msa0435260 AT4G24540.1 37.113 194 114 3 1 189 1 191 1.13e-29 110
Msa0435260 AT5G15800.1 43.396 159 83 4 1 153 1 158 1.29e-29 111
Msa0435260 AT5G23260.3 41.379 145 83 1 1 143 1 145 1.78e-29 110
Msa0435260 AT5G15800.2 43.396 159 83 4 1 153 1 158 1.89e-29 111
Msa0435260 AT4G37940.3 41.333 150 68 3 1 139 1 141 2.00e-29 108
Msa0435260 AT5G51870.5 39.490 157 77 6 1 146 24 173 2.04e-29 109
Msa0435260 AT3G58780.2 39.869 153 88 2 1 153 16 164 3.24e-29 110
Msa0435260 AT3G02310.2 43.046 151 82 2 1 147 1 151 4.21e-29 108
Msa0435260 AT3G02310.1 43.038 158 85 3 1 153 1 158 5.87e-29 109
Msa0435260 AT5G23260.1 41.667 144 82 1 1 142 17 160 8.37e-29 109
Msa0435260 AT3G58780.4 41.216 148 76 3 1 141 16 159 8.57e-29 109
Msa0435260 AT1G24260.1 42.593 162 82 5 1 153 1 160 3.05e-28 107
Msa0435260 AT1G24260.3 37.870 169 82 4 1 154 1 161 3.76e-28 107
Msa0435260 AT3G30260.1 40.523 153 83 4 1 147 1 151 5.74e-28 107
Msa0435260 AT2G22630.1 37.195 164 87 3 1 155 1 157 6.15e-28 106
Msa0435260 AT2G22630.2 37.195 164 87 3 1 155 1 157 6.15e-28 106
Msa0435260 AT1G24260.2 39.053 169 79 5 1 153 1 161 6.53e-28 107
Msa0435260 AT2G03710.3 37.748 151 90 1 1 147 1 151 9.78e-28 104
Msa0435260 AT2G03710.2 36.943 157 95 1 1 153 1 157 1.01e-27 106
Msa0435260 AT2G14210.1 40.506 158 75 3 1 147 1 150 1.13e-27 105
Msa0435260 AT2G03710.1 36.943 157 95 1 1 153 1 157 1.15e-27 106
Msa0435260 AT2G14210.2 40.506 158 75 3 1 147 1 150 1.28e-27 105
Msa0435260 AT1G26310.1 37.288 177 105 2 1 171 1 177 2.44e-27 105
Msa0435260 AT1G69120.2 41.250 160 84 4 1 153 1 157 2.76e-27 104
Msa0435260 AT1G69120.1 41.250 160 84 4 1 153 1 157 3.56e-27 105
Msa0435260 AT5G62165.17 36.774 155 87 3 1 148 1 151 5.37e-27 102
Msa0435260 AT5G62165.12 36.774 155 87 3 1 148 1 151 5.37e-27 102
Msa0435260 AT5G62165.11 36.774 155 87 3 1 148 1 151 5.37e-27 102
Msa0435260 AT3G58780.3 34.426 183 88 3 1 153 16 196 7.48e-27 104
Msa0435260 AT2G22540.3 41.463 164 77 4 1 153 1 156 1.08e-26 103
Msa0435260 AT2G22540.1 41.463 164 77 4 1 153 1 156 1.08e-26 103
Msa0435260 AT3G57390.3 33.854 192 109 5 1 177 1 189 1.31e-26 102
Msa0435260 AT5G62165.6 37.333 150 83 3 1 143 1 146 1.61e-26 100
Msa0435260 AT5G62165.9 37.333 150 83 3 1 143 1 146 1.61e-26 100
Msa0435260 AT5G62165.7 37.333 150 83 3 1 143 1 146 1.61e-26 100
Msa0435260 AT5G62165.8 37.333 150 83 3 1 143 1 146 1.61e-26 100
Msa0435260 AT5G62165.13 37.333 150 83 3 1 143 1 146 1.61e-26 100
Msa0435260 AT3G57390.1 33.854 192 109 5 1 177 1 189 2.34e-26 102
Msa0435260 AT5G51860.2 35.632 174 97 4 1 166 1 167 2.78e-26 101
Msa0435260 AT5G62165.3 36.250 160 91 3 1 153 1 156 3.81e-26 101
Msa0435260 AT5G62165.1 36.250 160 91 3 1 153 1 156 3.81e-26 101
Msa0435260 AT5G62165.2 36.250 160 91 3 1 153 1 156 3.81e-26 101
Msa0435260 AT5G51860.1 35.632 174 97 4 1 166 1 167 4.29e-26 100
Msa0435260 AT5G62165.10 38.514 148 80 3 1 141 1 144 1.62e-25 99.4
Msa0435260 AT5G62165.4 38.514 148 80 3 1 141 1 144 1.62e-25 99.4
Msa0435260 AT2G22540.2 41.509 159 79 4 1 153 1 151 2.65e-24 97.1
Msa0435260 AT5G10140.4 32.749 171 89 3 1 160 1 156 2.19e-22 90.5
Msa0435260 AT5G62165.14 65.000 60 21 0 1 60 1 60 3.80e-22 87.8
Msa0435260 AT5G65070.1 30.851 188 113 3 1 175 1 184 2.76e-21 88.2
Msa0435260 AT1G71692.1 52.632 76 35 1 1 76 1 75 8.73e-21 87.0
Msa0435260 AT5G10140.2 33.333 159 80 3 1 148 1 144 1.19e-20 85.5
Msa0435260 AT5G10140.1 33.333 159 80 3 1 148 1 144 1.47e-20 86.3
Msa0435260 AT5G65070.4 33.813 139 88 2 1 139 1 135 3.19e-20 84.0
Msa0435260 AT5G10140.3 33.333 159 80 3 1 148 1 144 3.54e-20 84.7
Msa0435260 AT5G65050.2 31.928 166 95 5 1 159 1 155 1.74e-19 82.8
Msa0435260 AT5G65050.3 31.928 166 95 5 1 159 1 155 2.09e-19 83.2
Msa0435260 AT5G65050.1 31.447 159 91 5 1 152 1 148 4.30e-19 82.0
Msa0435260 AT5G65080.3 32.168 143 93 2 1 143 8 146 1.03e-18 81.3
Msa0435260 AT5G65070.5 29.730 185 97 5 1 155 1 182 1.13e-18 81.6
Msa0435260 AT5G65050.5 33.125 160 90 5 1 159 1 144 1.48e-18 80.5
Msa0435260 AT5G65070.2 29.358 218 108 6 1 175 1 215 2.70e-18 80.9
Msa0435260 AT5G65070.3 31.507 219 103 9 1 175 1 216 3.51e-18 80.5
Msa0435260 AT5G65080.2 32.867 143 91 3 1 143 8 145 3.78e-18 80.1
Msa0435260 AT1G22130.1 66.667 54 18 0 1 54 1 54 3.80e-18 82.0
Msa0435260 AT1G77980.1 64.815 54 19 0 1 54 1 54 9.13e-18 80.9
Msa0435260 AT5G65060.1 29.870 154 82 4 1 143 1 139 1.65e-16 75.5
Msa0435260 AT5G65060.2 43.836 73 40 1 1 73 1 72 1.99e-16 74.7
Msa0435260 AT5G65060.3 29.870 154 82 4 1 143 1 139 2.64e-16 74.7
Msa0435260 AT1G18750.4 58.491 53 22 0 1 53 1 53 7.31e-16 75.9
Msa0435260 AT1G18750.1 58.491 53 22 0 1 53 1 53 7.97e-16 75.9
Msa0435260 AT1G18750.3 58.491 53 22 0 1 53 1 53 1.01e-15 75.9
Msa0435260 AT1G77080.4 32.026 153 100 2 1 153 1 149 2.32e-15 72.4
Msa0435260 AT2G03060.3 39.785 93 55 1 1 93 1 92 3.86e-15 73.9
Msa0435260 AT2G03060.7 39.785 93 55 1 1 93 1 92 3.86e-15 73.9
Msa0435260 AT2G03060.1 39.785 93 55 1 1 93 1 92 3.86e-15 73.9
Msa0435260 AT2G03060.2 39.785 93 55 1 1 93 1 92 4.06e-15 73.9
Msa0435260 AT1G77080.11 33.117 154 97 3 1 153 1 149 6.02e-15 70.9
Msa0435260 AT1G77080.5 32.026 153 100 2 1 153 1 149 6.56e-15 70.5
Msa0435260 AT1G31140.1 31.944 144 92 2 1 139 1 143 6.97e-15 71.2
Msa0435260 AT1G77080.12 31.250 160 90 2 1 154 1 146 7.57e-15 69.7
Msa0435260 AT1G77080.2 31.447 159 89 2 1 153 1 145 1.16e-14 70.1
Msa0435260 AT1G72350.1 30.612 147 85 2 2 131 43 189 1.36e-14 70.9
Msa0435260 AT1G01530.1 50.000 60 30 0 1 60 6 65 1.62e-14 70.9
Msa0435260 AT2G34440.1 43.836 73 39 1 1 71 1 73 2.19e-14 68.9
Msa0435260 AT1G31140.2 32.653 147 89 3 1 139 1 145 4.52e-14 68.9
Msa0435260 AT1G77950.3 53.704 54 25 0 1 54 1 54 4.83e-14 69.7
Msa0435260 AT1G77950.2 53.704 54 25 0 1 54 1 54 4.83e-14 69.7
Msa0435260 AT1G77950.1 53.704 54 25 0 1 54 1 54 4.83e-14 69.7
Msa0435260 AT1G77950.4 53.704 54 25 0 1 54 1 54 4.83e-14 69.7
Msa0435260 AT4G37435.1 52.632 57 27 0 1 57 1 57 1.38e-13 67.4
Msa0435260 AT3G66656.1 48.333 60 31 0 1 60 1 60 2.26e-13 66.6
Msa0435260 AT1G65360.1 45.161 62 34 0 1 62 6 67 5.27e-13 66.2
Msa0435260 AT1G69540.1 52.830 53 25 0 1 53 1 53 7.94e-13 67.0
Msa0435260 AT4G36590.1 50.820 61 30 0 2 62 7 67 8.44e-13 66.2
Msa0435260 AT5G60440.1 32.609 138 77 5 2 138 7 129 9.42e-13 66.6
Msa0435260 AT1G47760.1 33.333 126 72 3 1 121 1 119 9.65e-13 64.7
Msa0435260 AT1G69540.2 52.830 53 25 0 1 53 1 53 9.72e-13 67.0
Msa0435260 AT1G77080.8 46.575 73 38 1 1 73 1 72 1.05e-12 65.5
Msa0435260 AT2G24840.1 27.638 199 118 4 1 183 62 250 1.63e-12 65.5
Msa0435260 AT3G04100.1 41.667 60 35 0 2 61 14 73 3.49e-12 63.9
Msa0435260 AT1G29962.1 45.000 60 33 0 2 61 8 67 2.14e-11 61.2
Msa0435260 AT1G28460.1 45.000 60 33 0 2 61 8 67 3.40e-11 60.5

Find 64 sgRNAs with CRISPR-Local

Find 412 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGATTGGATTCTCAAATTT+AGG 0.238867 3_2:+88397310 Msa0435260:CDS
TCAACTTTACCTTCTTCCTT+TGG 0.281706 3_2:-88397018 None:intergenic
GGCAAAGACCATACCATTAT+AGG 0.302269 3_2:+88393546 Msa0435260:five_prime_UTR
CAACTTTACCTTCTTCCTTT+GGG 0.311919 3_2:-88397017 None:intergenic
TGTTCTCTATTCTCTTGATC+TGG 0.318834 3_2:-88393767 None:intergenic
GAGAGATGCATTTCCTATAA+TGG 0.324383 3_2:-88393559 None:intergenic
GCTCCTCCATTATGAGGATT+AGG 0.371350 3_2:-88397370 None:intergenic
TCATAGTATCATATTATTGT+TGG 0.373157 3_2:-88397481 None:intergenic
CACTGTTCTTTGTGATGCTA+AGG 0.392741 3_2:+88393854 Msa0435260:CDS
GAGGCTTCTTGAGGATGAAA+TGG 0.410025 3_2:+88394389 Msa0435260:CDS
ACTCATCCTAATCCTCATAA+TGG 0.416488 3_2:+88397364 Msa0435260:CDS
AGAAACTGAAAGATGTCAAT+AGG 0.417053 3_2:+88394204 Msa0435260:CDS
AGATAGATAGATAGATAGAT+AGG 0.420412 3_2:+88393709 Msa0435260:five_prime_UTR
GGAATCTTCGCAAGGAGATT+AGG 0.438224 3_2:+88394225 Msa0435260:CDS
TTCATGAAGCTTGCCAGTGC+TGG 0.445387 3_2:-88393895 None:intergenic
AGATAGATAGATAGGTAGCT+AGG 0.461727 3_2:+88393717 Msa0435260:five_prime_UTR
CAACAGACTCCTGCGTGACT+TGG 0.486936 3_2:+88397132 Msa0435260:CDS
CATAGCAAACAACAACAATC+AGG 0.488548 3_2:+88393673 Msa0435260:five_prime_UTR
GGGGAGTATGAGTCTGTGAT+TGG 0.494301 3_2:+88397295 Msa0435260:CDS
GTAGTTTAATAATGAGAGAG+AGG 0.503057 3_2:+88397105 Msa0435260:intron
TACGTACTAGGCAGAGGATG+GGG 0.507362 3_2:+88394334 Msa0435260:intron
GCTGATGCTCCTCCATTATG+AGG 0.513228 3_2:-88397376 None:intergenic
TGGAGGAGCATCAGCTGCCT+CGG 0.522325 3_2:+88397384 Msa0435260:CDS
TTGAAATGATGGACAATGGA+GGG 0.529931 3_2:+88397275 Msa0435260:CDS
TCTGTGGAACTCTCATTATG+AGG 0.531523 3_2:+88394079 Msa0435260:CDS
ACAAAGAACAGTGAGCTCAT+TGG 0.534621 3_2:-88393844 None:intergenic
CCCTCTGTATAGATAAGTCT+TGG 0.535006 3_2:-88393621 None:intergenic
GTAGCTAGGTTATCTAGCTA+TGG 0.544112 3_2:+88393731 Msa0435260:exon
ATGCATTTCCTATAATGGTA+TGG 0.547155 3_2:-88393554 None:intergenic
GAAAGAAACATACGAGGCGG+AGG 0.547284 3_2:-88393928 None:intergenic
GATTGACACCCAAAGGAAGA+AGG 0.549485 3_2:+88397009 Msa0435260:CDS
ACAGAGGGTAGGAACTAGAA+AGG 0.552507 3_2:+88393636 Msa0435260:five_prime_UTR
CTTGCGCTCACGAATAGCCT+TGG 0.554248 3_2:-88394421 None:intergenic
TGAAATGATGGACAATGGAG+GGG 0.558395 3_2:+88397276 Msa0435260:CDS
GATCAATATCAGATGACTGT+AGG 0.558840 3_2:+88394050 Msa0435260:CDS
TGAAATGGACAAGGCTGCCA+AGG 0.561225 3_2:+88394404 Msa0435260:CDS
ACTACGTACTAGGCAGAGGA+TGG 0.565678 3_2:+88394332 Msa0435260:intron
TTATTGTTGGAAAGTGATTG+TGG 0.567585 3_2:-88397468 None:intergenic
CTACGTACTAGGCAGAGGAT+GGG 0.571534 3_2:+88394333 Msa0435260:intron
CAAGGCTATTCGTGAGCGCA+AGG 0.573130 3_2:+88394422 Msa0435260:CDS
TTATGAGGATTAGGATGAGT+AGG 0.574178 3_2:-88397361 None:intergenic
ACTTACTCAAAACGAAGGAA+TGG 0.578899 3_2:+88393807 Msa0435260:CDS
GGAAGAGCTGAGGCTTCTTG+AGG 0.588608 3_2:+88394380 Msa0435260:CDS
CAAATCAGATTGACACCCAA+AGG 0.596522 3_2:+88397002 Msa0435260:CDS
TGGCGTGCAATCACAGACAA+TGG 0.598626 3_2:-88393601 None:intergenic
TTGTCCATCATTTCAAAACG+TGG 0.601318 3_2:-88397268 None:intergenic
AAAGAAACATACGAGGCGGA+GGG 0.606316 3_2:-88393927 None:intergenic
GCCAAGACTTATCTATACAG+AGG 0.611724 3_2:+88393620 Msa0435260:five_prime_UTR
ATCTGAGCATGGAAGAGCTG+AGG 0.615257 3_2:+88394370 Msa0435260:CDS
CCAAGACTTATCTATACAGA+GGG 0.622964 3_2:+88393621 Msa0435260:five_prime_UTR
CATCCTAATCCTCATAATGG+AGG 0.627926 3_2:+88397367 Msa0435260:CDS
TGTCAATAGGAATCTTCGCA+AGG 0.629338 3_2:+88394217 Msa0435260:CDS
ACGTACTAGGCAGAGGATGG+GGG 0.634592 3_2:+88394335 Msa0435260:intron
GACTTATCTATACAGAGGGT+AGG 0.637498 3_2:+88393625 Msa0435260:five_prime_UTR
TCTTGAGGATGAAATGGACA+AGG 0.641493 3_2:+88394395 Msa0435260:CDS
ATGTCTGAATGATCTGAGCA+TGG 0.649883 3_2:+88394359 Msa0435260:CDS
GGTTATCTAGCTATGGCTCG+AGG 0.656910 3_2:+88393738 Msa0435260:exon
AGGGTAAGTGGTGAGATCCG+AGG 0.669094 3_2:-88397401 None:intergenic
TTTGAAATGATGGACAATGG+AGG 0.672358 3_2:+88397274 Msa0435260:CDS
AAGCTCAATGCAAACATGCG+TGG 0.675598 3_2:-88397334 None:intergenic
AAGTAACTTACTCAAAACGA+AGG 0.681799 3_2:+88393802 Msa0435260:CDS
AAGAAACATACGAGGCGGAG+GGG 0.689447 3_2:-88393926 None:intergenic
TGACTGTAGGAATTGATCTG+TGG 0.697006 3_2:+88394063 Msa0435260:CDS
TGATACATACCAAGTCACGC+AGG 0.717237 3_2:-88397141 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAAAAAAAAAAAAAAAT+AGG + chr3_2:88395409-88395428 Msa0435260:intron 0.0%
!!! TTTTAAAAAAAAAAAAAAAT+AGG + chr3_2:88395409-88395428 Msa0435260:intron 0.0%
!! TGAAAAAAAATAAAAGAAAA+AGG - chr3_2:88394125-88394144 None:intergenic 10.0%
!! ATAAGTATTATAAATTTCTT+TGG + chr3_2:88394251-88394270 Msa0435260:intron 10.0%
!! ATATTTATATATAGGATTTA+GGG - chr3_2:88394297-88394316 None:intergenic 10.0%
!!! ACTATTTTCATAAAATATAT+TGG + chr3_2:88395096-88395115 Msa0435260:intron 10.0%
!!! TATAATTATATGATAATGTA+AGG - chr3_2:88396037-88396056 None:intergenic 10.0%
!!! CATAAATTTTAATATAGTAT+TGG - chr3_2:88396275-88396294 None:intergenic 10.0%
!! TTAAAATTTATGTTCAAAAT+CGG + chr3_2:88396283-88396302 Msa0435260:intron 10.0%
!!! AAAATTGATTGATTTAATTA+TGG + chr3_2:88397224-88397243 Msa0435260:intron 10.0%
!! TGAAAAAAAATAAAAGAAAA+AGG - chr3_2:88394125-88394144 None:intergenic 10.0%
!! ATAAGTATTATAAATTTCTT+TGG + chr3_2:88394251-88394270 Msa0435260:intron 10.0%
!! ATATTTATATATAGGATTTA+GGG - chr3_2:88394297-88394316 None:intergenic 10.0%
!!! ACTATTTTCATAAAATATAT+TGG + chr3_2:88395096-88395115 Msa0435260:intron 10.0%
!!! TATAATTATATGATAATGTA+AGG - chr3_2:88396037-88396056 None:intergenic 10.0%
!!! CATAAATTTTAATATAGTAT+TGG - chr3_2:88396275-88396294 None:intergenic 10.0%
!! TTAAAATTTATGTTCAAAAT+CGG + chr3_2:88396283-88396302 Msa0435260:intron 10.0%
!!! AAAATTGATTGATTTAATTA+TGG + chr3_2:88397224-88397243 Msa0435260:intron 10.0%
!! AAATAAAAGAAAAAGGAAAA+GGG - chr3_2:88394118-88394137 None:intergenic 15.0%
!! AAAATAAAAGAAAAAGGAAA+AGG - chr3_2:88394119-88394138 None:intergenic 15.0%
!! CATATTTATATATAGGATTT+AGG - chr3_2:88394298-88394317 None:intergenic 15.0%
!! ACATATGCATATTTATATAT+AGG - chr3_2:88394305-88394324 None:intergenic 15.0%
!! TAAACAAAAATTCTTCAAAA+AGG - chr3_2:88394776-88394795 None:intergenic 15.0%
!!! TTTAATACTTTTGTTGTAAT+GGG - chr3_2:88394894-88394913 None:intergenic 15.0%
!!! ATTTAATACTTTTGTTGTAA+TGG - chr3_2:88394895-88394914 None:intergenic 15.0%
!!! ATCAATTTTTGTCATATTTA+AGG + chr3_2:88395747-88395766 Msa0435260:intron 15.0%
!!! TCAATTTTTGTCATATTTAA+GGG + chr3_2:88395748-88395767 Msa0435260:intron 15.0%
!! ATATACTACGATAAAAATAA+AGG - chr3_2:88395891-88395910 None:intergenic 15.0%
!! AAGAATTGACAAATAAAATT+AGG + chr3_2:88396407-88396426 Msa0435260:intron 15.0%
!!! TCATTTTATCTATAAATTAC+AGG + chr3_2:88396618-88396637 Msa0435260:intron 15.0%
!! ATTCTATTTAAGTAAAAAAC+TGG - chr3_2:88396800-88396819 None:intergenic 15.0%
!! AAATAAAAGAAAAAGGAAAA+GGG - chr3_2:88394118-88394137 None:intergenic 15.0%
!! AAAATAAAAGAAAAAGGAAA+AGG - chr3_2:88394119-88394138 None:intergenic 15.0%
!! CATATTTATATATAGGATTT+AGG - chr3_2:88394298-88394317 None:intergenic 15.0%
!! ACATATGCATATTTATATAT+AGG - chr3_2:88394305-88394324 None:intergenic 15.0%
!! TAAACAAAAATTCTTCAAAA+AGG - chr3_2:88394776-88394795 None:intergenic 15.0%
!!! TTTAATACTTTTGTTGTAAT+GGG - chr3_2:88394894-88394913 None:intergenic 15.0%
!!! ATTTAATACTTTTGTTGTAA+TGG - chr3_2:88394895-88394914 None:intergenic 15.0%
!!! ATCAATTTTTGTCATATTTA+AGG + chr3_2:88395747-88395766 Msa0435260:intron 15.0%
!!! TCAATTTTTGTCATATTTAA+GGG + chr3_2:88395748-88395767 Msa0435260:intron 15.0%
!! ATATACTACGATAAAAATAA+AGG - chr3_2:88395891-88395910 None:intergenic 15.0%
!! AAGAATTGACAAATAAAATT+AGG + chr3_2:88396407-88396426 Msa0435260:intron 15.0%
!!! TCATTTTATCTATAAATTAC+AGG + chr3_2:88396618-88396637 Msa0435260:intron 15.0%
!! ATTCTATTTAAGTAAAAAAC+TGG - chr3_2:88396800-88396819 None:intergenic 15.0%
!! TCTGATTTATATTATTGTCT+TGG + chr3_2:88394001-88394020 Msa0435260:intron 20.0%
!!! TTATATGTGTGATGAAATTT+TGG - chr3_2:88394526-88394545 None:intergenic 20.0%
!! TTCATCACACATATAAATTA+AGG + chr3_2:88394530-88394549 Msa0435260:intron 20.0%
!! TAAATAAAACAGATTACGAA+AGG - chr3_2:88394681-88394700 None:intergenic 20.0%
!!! TTCGTAATCTGTTTTATTTA+CGG + chr3_2:88394681-88394700 Msa0435260:intron 20.0%
!! AATTATTCATATCATGACAA+AGG - chr3_2:88395014-88395033 None:intergenic 20.0%
!! TTCATAAAATATATTGGAGA+AGG + chr3_2:88395102-88395121 Msa0435260:intron 20.0%
!! TCATAAAATATATTGGAGAA+GGG + chr3_2:88395103-88395122 Msa0435260:intron 20.0%
!! TTTACACATGAGAAAATAAA+TGG + chr3_2:88395159-88395178 Msa0435260:intron 20.0%
!!! AAATTTTAAAATGACTTAGG+TGG - chr3_2:88395591-88395610 None:intergenic 20.0%
!!! ACCTAAGTCATTTTAAAATT+TGG + chr3_2:88395590-88395609 Msa0435260:intron 20.0%
!!! ACCAAATTTTAAAATGACTT+AGG - chr3_2:88395594-88395613 None:intergenic 20.0%
!!! CTAAATTTTGATATCATGAA+TGG + chr3_2:88395847-88395866 Msa0435260:intron 20.0%
!! TCATAAAAAAATAGTGAAGT+AGG + chr3_2:88395952-88395971 Msa0435260:intron 20.0%
!! CATAAAAAAATAGTGAAGTA+GGG + chr3_2:88395953-88395972 Msa0435260:intron 20.0%
!! ATTGCATTTACTTGTAAAAT+CGG + chr3_2:88396306-88396325 Msa0435260:intron 20.0%
!! AAAAAAGAACCAAAGTTATT+AGG - chr3_2:88396592-88396611 None:intergenic 20.0%
!!! TTGTTTTCTCCATTAATTTT+CGG + chr3_2:88396688-88396707 Msa0435260:intron 20.0%
!!! TTAACTTATTTCTTGTTCAT+AGG + chr3_2:88397041-88397060 Msa0435260:intron 20.0%
!! ACTTAGATAGAATTACATAT+AGG + chr3_2:88397176-88397195 Msa0435260:intron 20.0%
!!! TTGATTGATTTAATTATGGA+AGG + chr3_2:88397228-88397247 Msa0435260:intron 20.0%
!! TCATAGTATCATATTATTGT+TGG - chr3_2:88397484-88397503 None:intergenic 20.0%
!! TCTGATTTATATTATTGTCT+TGG + chr3_2:88394001-88394020 Msa0435260:intron 20.0%
!!! TTATATGTGTGATGAAATTT+TGG - chr3_2:88394526-88394545 None:intergenic 20.0%
!! TTCATCACACATATAAATTA+AGG + chr3_2:88394530-88394549 Msa0435260:intron 20.0%
!! TAAATAAAACAGATTACGAA+AGG - chr3_2:88394681-88394700 None:intergenic 20.0%
!!! TTCGTAATCTGTTTTATTTA+CGG + chr3_2:88394681-88394700 Msa0435260:intron 20.0%
!! AATTATTCATATCATGACAA+AGG - chr3_2:88395014-88395033 None:intergenic 20.0%
!! TTCATAAAATATATTGGAGA+AGG + chr3_2:88395102-88395121 Msa0435260:intron 20.0%
!! TCATAAAATATATTGGAGAA+GGG + chr3_2:88395103-88395122 Msa0435260:intron 20.0%
!! TTTACACATGAGAAAATAAA+TGG + chr3_2:88395159-88395178 Msa0435260:intron 20.0%
!!! AAATTTTAAAATGACTTAGG+TGG - chr3_2:88395591-88395610 None:intergenic 20.0%
!!! ACCTAAGTCATTTTAAAATT+TGG + chr3_2:88395590-88395609 Msa0435260:intron 20.0%
!!! ACCAAATTTTAAAATGACTT+AGG - chr3_2:88395594-88395613 None:intergenic 20.0%
!!! CTAAATTTTGATATCATGAA+TGG + chr3_2:88395847-88395866 Msa0435260:intron 20.0%
!! TCATAAAAAAATAGTGAAGT+AGG + chr3_2:88395952-88395971 Msa0435260:intron 20.0%
!! CATAAAAAAATAGTGAAGTA+GGG + chr3_2:88395953-88395972 Msa0435260:intron 20.0%
!! ATTGCATTTACTTGTAAAAT+CGG + chr3_2:88396306-88396325 Msa0435260:intron 20.0%
!! AAAAAAGAACCAAAGTTATT+AGG - chr3_2:88396592-88396611 None:intergenic 20.0%
!!! TTGTTTTCTCCATTAATTTT+CGG + chr3_2:88396688-88396707 Msa0435260:intron 20.0%
!!! TTAACTTATTTCTTGTTCAT+AGG + chr3_2:88397041-88397060 Msa0435260:intron 20.0%
!! ACTTAGATAGAATTACATAT+AGG + chr3_2:88397176-88397195 Msa0435260:intron 20.0%
!!! TTGATTGATTTAATTATGGA+AGG + chr3_2:88397228-88397247 Msa0435260:intron 20.0%
!! TCATAGTATCATATTATTGT+TGG - chr3_2:88397484-88397503 None:intergenic 20.0%
! AGATAGATAGATAGATAGAT+AGG + chr3_2:88393709-88393728 Msa0435260:five_prime_UTR 25.0%
! TTATATATAGGATTTAGGGA+AGG - chr3_2:88394293-88394312 None:intergenic 25.0%
! ATAATTCCAAATTAGCTACA+AGG - chr3_2:88394728-88394747 None:intergenic 25.0%
! TATGTACATGTCATTACATA+TGG + chr3_2:88395329-88395348 Msa0435260:intron 25.0%
! ATGTACATGTCATTACATAT+GGG + chr3_2:88395330-88395349 Msa0435260:intron 25.0%
!!! CATTTTAGAAACTCATTAAG+AGG + chr3_2:88395443-88395462 Msa0435260:intron 25.0%
! TATACATAAGTAGACAAGTT+AGG + chr3_2:88395543-88395562 Msa0435260:intron 25.0%
! ATACATAAGTAGACAAGTTA+GGG + chr3_2:88395544-88395563 Msa0435260:intron 25.0%
! ATATAATTGAAGCATGTCAT+AGG - chr3_2:88395638-88395657 None:intergenic 25.0%
! TATCATAGCCAAAATCTATT+GGG - chr3_2:88396177-88396196 None:intergenic 25.0%
! ATTTACTTGTAAAATCGGTT+TGG + chr3_2:88396311-88396330 Msa0435260:intron 25.0%
! TGGTGCAGAATAAAAATATT+TGG + chr3_2:88396331-88396350 Msa0435260:intron 25.0%
!! AAAACTAAAAGGACTTGTTT+GGG - chr3_2:88396500-88396519 None:intergenic 25.0%
!! AAAAACTAAAAGGACTTGTT+TGG - chr3_2:88396501-88396520 None:intergenic 25.0%
! GAAACGATTCAAAAACTAAA+AGG - chr3_2:88396511-88396530 None:intergenic 25.0%
!!! TTTCAAACAAGTCATTTTAG+AGG + chr3_2:88396527-88396546 Msa0435260:intron 25.0%
!!! GAGAAAACAATTTGATTTTG+TGG - chr3_2:88396678-88396697 None:intergenic 25.0%
! TTATGCTAACCGAAAATTAA+TGG - chr3_2:88396700-88396719 None:intergenic 25.0%
! TTAAGTAAAAAACTGGAGAA+GGG - chr3_2:88396793-88396812 None:intergenic 25.0%
! TTTAAGTAAAAAACTGGAGA+AGG - chr3_2:88396794-88396813 None:intergenic 25.0%
! AATTGCATAACAAACTAACA+AGG - chr3_2:88396907-88396926 None:intergenic 25.0%
! GAAGTGACTAAAAAAGTAAA+GGG - chr3_2:88397423-88397442 None:intergenic 25.0%
! AGAAGTGACTAAAAAAGTAA+AGG - chr3_2:88397424-88397443 None:intergenic 25.0%
! AGATAGATAGATAGATAGAT+AGG + chr3_2:88393709-88393728 Msa0435260:five_prime_UTR 25.0%
! TTATATATAGGATTTAGGGA+AGG - chr3_2:88394293-88394312 None:intergenic 25.0%
! ATAATTCCAAATTAGCTACA+AGG - chr3_2:88394728-88394747 None:intergenic 25.0%
! TATGTACATGTCATTACATA+TGG + chr3_2:88395329-88395348 Msa0435260:intron 25.0%
! ATGTACATGTCATTACATAT+GGG + chr3_2:88395330-88395349 Msa0435260:intron 25.0%
!!! CATTTTAGAAACTCATTAAG+AGG + chr3_2:88395443-88395462 Msa0435260:intron 25.0%
! TATACATAAGTAGACAAGTT+AGG + chr3_2:88395543-88395562 Msa0435260:intron 25.0%
! ATACATAAGTAGACAAGTTA+GGG + chr3_2:88395544-88395563 Msa0435260:intron 25.0%
! ATATAATTGAAGCATGTCAT+AGG - chr3_2:88395638-88395657 None:intergenic 25.0%
! TATCATAGCCAAAATCTATT+GGG - chr3_2:88396177-88396196 None:intergenic 25.0%
! ATTTACTTGTAAAATCGGTT+TGG + chr3_2:88396311-88396330 Msa0435260:intron 25.0%
! TGGTGCAGAATAAAAATATT+TGG + chr3_2:88396331-88396350 Msa0435260:intron 25.0%
!! AAAACTAAAAGGACTTGTTT+GGG - chr3_2:88396500-88396519 None:intergenic 25.0%
!! AAAAACTAAAAGGACTTGTT+TGG - chr3_2:88396501-88396520 None:intergenic 25.0%
! GAAACGATTCAAAAACTAAA+AGG - chr3_2:88396511-88396530 None:intergenic 25.0%
!!! TTTCAAACAAGTCATTTTAG+AGG + chr3_2:88396527-88396546 Msa0435260:intron 25.0%
!!! GAGAAAACAATTTGATTTTG+TGG - chr3_2:88396678-88396697 None:intergenic 25.0%
! TTATGCTAACCGAAAATTAA+TGG - chr3_2:88396700-88396719 None:intergenic 25.0%
! TTAAGTAAAAAACTGGAGAA+GGG - chr3_2:88396793-88396812 None:intergenic 25.0%
! TTTAAGTAAAAAACTGGAGA+AGG - chr3_2:88396794-88396813 None:intergenic 25.0%
! AATTGCATAACAAACTAACA+AGG - chr3_2:88396907-88396926 None:intergenic 25.0%
! GAAGTGACTAAAAAAGTAAA+GGG - chr3_2:88397423-88397442 None:intergenic 25.0%
! AGAAGTGACTAAAAAAGTAA+AGG - chr3_2:88397424-88397443 None:intergenic 25.0%
ATGCATTTCCTATAATGGTA+TGG - chr3_2:88393557-88393576 None:intergenic 30.0%
AAGTAACTTACTCAAAACGA+AGG + chr3_2:88393802-88393821 Msa0435260:CDS 30.0%
! ATTATTATGTTTTCCAGCAC+TGG + chr3_2:88393882-88393901 Msa0435260:CDS 30.0%
ATAAATAGAGAAGCTAGCTA+GGG - chr3_2:88393959-88393978 None:intergenic 30.0%
AGAAAAAGGAAAAGGGAAAA+TGG - chr3_2:88394111-88394130 None:intergenic 30.0%
AAGTTCTCTTGCATATTCTA+TGG - chr3_2:88394182-88394201 None:intergenic 30.0%
AGAAACTGAAAGATGTCAAT+AGG + chr3_2:88394204-88394223 Msa0435260:CDS 30.0%
TCAACTAAATTCTATGTCTC+TGG - chr3_2:88394584-88394603 None:intergenic 30.0%
TAAAATGCATTAATGAGTCC+TGG + chr3_2:88394851-88394870 Msa0435260:intron 30.0%
! GTTTAGAGTATAATATCACC+AGG - chr3_2:88394872-88394891 None:intergenic 30.0%
TTCAACTCAATAATCGAACT+CGG - chr3_2:88394971-88394990 None:intergenic 30.0%
ATGTGTAAATTACACATGAG+AGG - chr3_2:88395148-88395167 None:intergenic 30.0%
! TATTTTCATCAGCTCACAAA+TGG - chr3_2:88395295-88395314 None:intergenic 30.0%
AAACTAAGATAAGCTCATGT+TGG - chr3_2:88395375-88395394 None:intergenic 30.0%
ATAAAAGCTGCATTGTAAAG+TGG - chr3_2:88395932-88395951 None:intergenic 30.0%
!! AGTGAAGTAGGGTTTTATAA+AGG + chr3_2:88395964-88395983 Msa0435260:intron 30.0%
!!! CATATGCTATTTTTTAAGCC+CGG - chr3_2:88395991-88396010 None:intergenic 30.0%
! AACATTTGAAGTGTGACTAT+TGG + chr3_2:88396122-88396141 Msa0435260:intron 30.0%
GTATCATAGCCAAAATCTAT+TGG - chr3_2:88396178-88396197 None:intergenic 30.0%
!! CTTACAAAGTTGACTTGTAA+AGG + chr3_2:88396224-88396243 Msa0435260:intron 30.0%
ATTAGGTCAAATGCATCTAA+AGG + chr3_2:88396424-88396443 Msa0435260:intron 30.0%
GGGAAAAACGAAAAACTTAA+AGG - chr3_2:88396451-88396470 None:intergenic 30.0%
GAAACTTAAAGGATCACTTT+GGG - chr3_2:88396471-88396490 None:intergenic 30.0%
TGAAACTTAAAGGATCACTT+TGG - chr3_2:88396472-88396491 None:intergenic 30.0%
!!! TTGGGACTTTTGAAACTTAA+AGG - chr3_2:88396482-88396501 None:intergenic 30.0%
!! AAACAAGTCCTTTTAGTTAC+TGG + chr3_2:88396566-88396585 Msa0435260:intron 30.0%
TTATTAGGCCAGTAACTAAA+AGG - chr3_2:88396577-88396596 None:intergenic 30.0%
TAAGTAAAAAACTGGAGAAG+GGG - chr3_2:88396792-88396811 None:intergenic 30.0%
TACACTTGAGACAAATTGAT+TGG - chr3_2:88396864-88396883 None:intergenic 30.0%
TAACGAGTTTCTTATGACAA+TGG + chr3_2:88396959-88396978 Msa0435260:intron 30.0%
!! TGACAATGGATTACAGTATA+AGG + chr3_2:88396973-88396992 Msa0435260:intron 30.0%
GTAGTTTAATAATGAGAGAG+AGG + chr3_2:88397105-88397124 Msa0435260:intron 30.0%
GTGATTGGATTCTCAAATTT+AGG + chr3_2:88397310-88397329 Msa0435260:CDS 30.0%
CTAAAAAAGTAAAGGGTAAG+TGG - chr3_2:88397416-88397435 None:intergenic 30.0%
TTATTGTTGGAAAGTGATTG+TGG - chr3_2:88397471-88397490 None:intergenic 30.0%
ATGCATTTCCTATAATGGTA+TGG - chr3_2:88393557-88393576 None:intergenic 30.0%
AAGTAACTTACTCAAAACGA+AGG + chr3_2:88393802-88393821 Msa0435260:CDS 30.0%
! ATTATTATGTTTTCCAGCAC+TGG + chr3_2:88393882-88393901 Msa0435260:CDS 30.0%
ATAAATAGAGAAGCTAGCTA+GGG - chr3_2:88393959-88393978 None:intergenic 30.0%
AGAAAAAGGAAAAGGGAAAA+TGG - chr3_2:88394111-88394130 None:intergenic 30.0%
AAGTTCTCTTGCATATTCTA+TGG - chr3_2:88394182-88394201 None:intergenic 30.0%
AGAAACTGAAAGATGTCAAT+AGG + chr3_2:88394204-88394223 Msa0435260:CDS 30.0%
TCAACTAAATTCTATGTCTC+TGG - chr3_2:88394584-88394603 None:intergenic 30.0%
TAAAATGCATTAATGAGTCC+TGG + chr3_2:88394851-88394870 Msa0435260:intron 30.0%
! GTTTAGAGTATAATATCACC+AGG - chr3_2:88394872-88394891 None:intergenic 30.0%
TTCAACTCAATAATCGAACT+CGG - chr3_2:88394971-88394990 None:intergenic 30.0%
ATGTGTAAATTACACATGAG+AGG - chr3_2:88395148-88395167 None:intergenic 30.0%
! TATTTTCATCAGCTCACAAA+TGG - chr3_2:88395295-88395314 None:intergenic 30.0%
AAACTAAGATAAGCTCATGT+TGG - chr3_2:88395375-88395394 None:intergenic 30.0%
ATAAAAGCTGCATTGTAAAG+TGG - chr3_2:88395932-88395951 None:intergenic 30.0%
!! AGTGAAGTAGGGTTTTATAA+AGG + chr3_2:88395964-88395983 Msa0435260:intron 30.0%
!!! CATATGCTATTTTTTAAGCC+CGG - chr3_2:88395991-88396010 None:intergenic 30.0%
! AACATTTGAAGTGTGACTAT+TGG + chr3_2:88396122-88396141 Msa0435260:intron 30.0%
GTATCATAGCCAAAATCTAT+TGG - chr3_2:88396178-88396197 None:intergenic 30.0%
!! CTTACAAAGTTGACTTGTAA+AGG + chr3_2:88396224-88396243 Msa0435260:intron 30.0%
ATTAGGTCAAATGCATCTAA+AGG + chr3_2:88396424-88396443 Msa0435260:intron 30.0%
GGGAAAAACGAAAAACTTAA+AGG - chr3_2:88396451-88396470 None:intergenic 30.0%
GAAACTTAAAGGATCACTTT+GGG - chr3_2:88396471-88396490 None:intergenic 30.0%
TGAAACTTAAAGGATCACTT+TGG - chr3_2:88396472-88396491 None:intergenic 30.0%
!!! TTGGGACTTTTGAAACTTAA+AGG - chr3_2:88396482-88396501 None:intergenic 30.0%
!! AAACAAGTCCTTTTAGTTAC+TGG + chr3_2:88396566-88396585 Msa0435260:intron 30.0%
TTATTAGGCCAGTAACTAAA+AGG - chr3_2:88396577-88396596 None:intergenic 30.0%
TAAGTAAAAAACTGGAGAAG+GGG - chr3_2:88396792-88396811 None:intergenic 30.0%
TACACTTGAGACAAATTGAT+TGG - chr3_2:88396864-88396883 None:intergenic 30.0%
TAACGAGTTTCTTATGACAA+TGG + chr3_2:88396959-88396978 Msa0435260:intron 30.0%
!! TGACAATGGATTACAGTATA+AGG + chr3_2:88396973-88396992 Msa0435260:intron 30.0%
GTAGTTTAATAATGAGAGAG+AGG + chr3_2:88397105-88397124 Msa0435260:intron 30.0%
GTGATTGGATTCTCAAATTT+AGG + chr3_2:88397310-88397329 Msa0435260:CDS 30.0%
CTAAAAAAGTAAAGGGTAAG+TGG - chr3_2:88397416-88397435 None:intergenic 30.0%
TTATTGTTGGAAAGTGATTG+TGG - chr3_2:88397471-88397490 None:intergenic 30.0%
GAGAGATGCATTTCCTATAA+TGG - chr3_2:88393562-88393581 None:intergenic 35.0%
CCAAGACTTATCTATACAGA+GGG + chr3_2:88393621-88393640 Msa0435260:five_prime_UTR 35.0%
CATAGCAAACAACAACAATC+AGG + chr3_2:88393673-88393692 Msa0435260:five_prime_UTR 35.0%
AGATAGATAGATAGGTAGCT+AGG + chr3_2:88393717-88393736 Msa0435260:five_prime_UTR 35.0%
TGTTCTCTATTCTCTTGATC+TGG - chr3_2:88393770-88393789 None:intergenic 35.0%
ACTTACTCAAAACGAAGGAA+TGG + chr3_2:88393807-88393826 Msa0435260:CDS 35.0%
!! AAGGAATGGTCTTTTCAAGA+AGG + chr3_2:88393821-88393840 Msa0435260:CDS 35.0%
GTTAGAGAAAGAAACATACG+AGG - chr3_2:88393937-88393956 None:intergenic 35.0%
GATAAATAGAGAAGCTAGCT+AGG - chr3_2:88393960-88393979 None:intergenic 35.0%
GATCAATATCAGATGACTGT+AGG + chr3_2:88394050-88394069 Msa0435260:CDS 35.0%
!! GTCGTACAAAATGGACTTTT+AGG + chr3_2:88394636-88394655 Msa0435260:intron 35.0%
ATTCTGCCTTGTAGCTAATT+TGG + chr3_2:88394719-88394738 Msa0435260:intron 35.0%
TAAGATAAGCTCATGTTGGT+TGG - chr3_2:88395371-88395390 None:intergenic 35.0%
GGTCAATTGAATTAGACTTG+TGG + chr3_2:88395611-88395630 Msa0435260:intron 35.0%
!! AGTAGGGTTTTATAAAGGTC+CGG + chr3_2:88395969-88395988 Msa0435260:intron 35.0%
GACAAGTAATGTGTTAGACT+CGG + chr3_2:88396010-88396029 Msa0435260:intron 35.0%
ATGTTCAATCTTAGACGTGA+GGG - chr3_2:88396107-88396126 None:intergenic 35.0%
AATGTTCAATCTTAGACGTG+AGG - chr3_2:88396108-88396127 None:intergenic 35.0%
! TTCTTTCACACTTTTGTGTG+TGG - chr3_2:88396392-88396411 None:intergenic 35.0%
! AGTTACTGGCCTAATAACTT+TGG + chr3_2:88396580-88396599 Msa0435260:intron 35.0%
AGGTGTTCAGTTCAAATTGT+TGG + chr3_2:88396638-88396657 Msa0435260:intron 35.0%
ACTAGCAAGCAATTTAGCAT+TGG - chr3_2:88396731-88396750 None:intergenic 35.0%
TAACAAACTAACAAGGTGAG+AGG - chr3_2:88396900-88396919 None:intergenic 35.0%
TCATAAGAAACTCGTTAGCA+TGG - chr3_2:88396956-88396975 None:intergenic 35.0%
CAACTTTACCTTCTTCCTTT+GGG - chr3_2:88397020-88397039 None:intergenic 35.0%
TCAACTTTACCTTCTTCCTT+TGG - chr3_2:88397021-88397040 None:intergenic 35.0%
!!! AGATCCACGTTTTGAAATGA+TGG + chr3_2:88397264-88397283 Msa0435260:CDS 35.0%
TTGTCCATCATTTCAAAACG+TGG - chr3_2:88397271-88397290 None:intergenic 35.0%
!!! CGTTTTGAAATGATGGACAA+TGG + chr3_2:88397271-88397290 Msa0435260:CDS 35.0%
!! TTTGAAATGATGGACAATGG+AGG + chr3_2:88397274-88397293 Msa0435260:CDS 35.0%
!! TTGAAATGATGGACAATGGA+GGG + chr3_2:88397275-88397294 Msa0435260:CDS 35.0%
TTATGAGGATTAGGATGAGT+AGG - chr3_2:88397364-88397383 None:intergenic 35.0%
ACTCATCCTAATCCTCATAA+TGG + chr3_2:88397364-88397383 Msa0435260:CDS 35.0%
GAGAGATGCATTTCCTATAA+TGG - chr3_2:88393562-88393581 None:intergenic 35.0%
CCAAGACTTATCTATACAGA+GGG + chr3_2:88393621-88393640 Msa0435260:five_prime_UTR 35.0%
CATAGCAAACAACAACAATC+AGG + chr3_2:88393673-88393692 Msa0435260:five_prime_UTR 35.0%
AGATAGATAGATAGGTAGCT+AGG + chr3_2:88393717-88393736 Msa0435260:five_prime_UTR 35.0%
TGTTCTCTATTCTCTTGATC+TGG - chr3_2:88393770-88393789 None:intergenic 35.0%
ACTTACTCAAAACGAAGGAA+TGG + chr3_2:88393807-88393826 Msa0435260:CDS 35.0%
!! AAGGAATGGTCTTTTCAAGA+AGG + chr3_2:88393821-88393840 Msa0435260:CDS 35.0%
GTTAGAGAAAGAAACATACG+AGG - chr3_2:88393937-88393956 None:intergenic 35.0%
GATAAATAGAGAAGCTAGCT+AGG - chr3_2:88393960-88393979 None:intergenic 35.0%
GATCAATATCAGATGACTGT+AGG + chr3_2:88394050-88394069 Msa0435260:CDS 35.0%
!! GTCGTACAAAATGGACTTTT+AGG + chr3_2:88394636-88394655 Msa0435260:intron 35.0%
ATTCTGCCTTGTAGCTAATT+TGG + chr3_2:88394719-88394738 Msa0435260:intron 35.0%
TAAGATAAGCTCATGTTGGT+TGG - chr3_2:88395371-88395390 None:intergenic 35.0%
GGTCAATTGAATTAGACTTG+TGG + chr3_2:88395611-88395630 Msa0435260:intron 35.0%
!! AGTAGGGTTTTATAAAGGTC+CGG + chr3_2:88395969-88395988 Msa0435260:intron 35.0%
GACAAGTAATGTGTTAGACT+CGG + chr3_2:88396010-88396029 Msa0435260:intron 35.0%
ATGTTCAATCTTAGACGTGA+GGG - chr3_2:88396107-88396126 None:intergenic 35.0%
AATGTTCAATCTTAGACGTG+AGG - chr3_2:88396108-88396127 None:intergenic 35.0%
! TTCTTTCACACTTTTGTGTG+TGG - chr3_2:88396392-88396411 None:intergenic 35.0%
! AGTTACTGGCCTAATAACTT+TGG + chr3_2:88396580-88396599 Msa0435260:intron 35.0%
AGGTGTTCAGTTCAAATTGT+TGG + chr3_2:88396638-88396657 Msa0435260:intron 35.0%
ACTAGCAAGCAATTTAGCAT+TGG - chr3_2:88396731-88396750 None:intergenic 35.0%
TAACAAACTAACAAGGTGAG+AGG - chr3_2:88396900-88396919 None:intergenic 35.0%
TCATAAGAAACTCGTTAGCA+TGG - chr3_2:88396956-88396975 None:intergenic 35.0%
CAACTTTACCTTCTTCCTTT+GGG - chr3_2:88397020-88397039 None:intergenic 35.0%
TCAACTTTACCTTCTTCCTT+TGG - chr3_2:88397021-88397040 None:intergenic 35.0%
!!! AGATCCACGTTTTGAAATGA+TGG + chr3_2:88397264-88397283 Msa0435260:CDS 35.0%
TTGTCCATCATTTCAAAACG+TGG - chr3_2:88397271-88397290 None:intergenic 35.0%
!!! CGTTTTGAAATGATGGACAA+TGG + chr3_2:88397271-88397290 Msa0435260:CDS 35.0%
!! TTTGAAATGATGGACAATGG+AGG + chr3_2:88397274-88397293 Msa0435260:CDS 35.0%
!! TTGAAATGATGGACAATGGA+GGG + chr3_2:88397275-88397294 Msa0435260:CDS 35.0%
TTATGAGGATTAGGATGAGT+AGG - chr3_2:88397364-88397383 None:intergenic 35.0%
ACTCATCCTAATCCTCATAA+TGG + chr3_2:88397364-88397383 Msa0435260:CDS 35.0%
GGCAAAGACCATACCATTAT+AGG + chr3_2:88393546-88393565 Msa0435260:five_prime_UTR 40.0%
GCCAAGACTTATCTATACAG+AGG + chr3_2:88393620-88393639 Msa0435260:five_prime_UTR 40.0%
CCCTCTGTATAGATAAGTCT+TGG - chr3_2:88393624-88393643 None:intergenic 40.0%
GACTTATCTATACAGAGGGT+AGG + chr3_2:88393625-88393644 Msa0435260:five_prime_UTR 40.0%
GTAGCTAGGTTATCTAGCTA+TGG + chr3_2:88393731-88393750 Msa0435260:exon 40.0%
ACAAAGAACAGTGAGCTCAT+TGG - chr3_2:88393847-88393866 None:intergenic 40.0%
CACTGTTCTTTGTGATGCTA+AGG + chr3_2:88393854-88393873 Msa0435260:CDS 40.0%
AGAGAAAGAAACATACGAGG+CGG - chr3_2:88393934-88393953 None:intergenic 40.0%
TGACTGTAGGAATTGATCTG+TGG + chr3_2:88394063-88394082 Msa0435260:CDS 40.0%
TCTGTGGAACTCTCATTATG+AGG + chr3_2:88394079-88394098 Msa0435260:CDS 40.0%
TGTCAATAGGAATCTTCGCA+AGG + chr3_2:88394217-88394236 Msa0435260:CDS 40.0%
TGTGTGTTGTACTACGTACT+AGG + chr3_2:88394322-88394341 Msa0435260:intron 40.0%
ATGTCTGAATGATCTGAGCA+TGG + chr3_2:88394359-88394378 Msa0435260:CDS 40.0%
TCTTGAGGATGAAATGGACA+AGG + chr3_2:88394395-88394414 Msa0435260:CDS 40.0%
!! GTAGGGTTTTATAAAGGTCC+GGG + chr3_2:88395970-88395989 Msa0435260:intron 40.0%
AGTGTGACTATTGGCATGAT+AGG + chr3_2:88396131-88396150 Msa0435260:intron 40.0%
GTGTGACTATTGGCATGATA+GGG + chr3_2:88396132-88396151 Msa0435260:intron 40.0%
TGTGACTATTGGCATGATAG+GGG + chr3_2:88396133-88396152 Msa0435260:intron 40.0%
! GCAAGTGACCCAATAGATTT+TGG + chr3_2:88396166-88396185 Msa0435260:intron 40.0%
!! AGTTGACTTGTAAAGGTCGA+TGG + chr3_2:88396231-88396250 Msa0435260:intron 40.0%
!!! AGTACCAATTTTTCGAGCAG+CGG + chr3_2:88396748-88396767 Msa0435260:intron 40.0%
CAAATCAGATTGACACCCAA+AGG + chr3_2:88397002-88397021 Msa0435260:CDS 40.0%
!! TGAAATGATGGACAATGGAG+GGG + chr3_2:88397276-88397295 Msa0435260:CDS 40.0%
CATCCTAATCCTCATAATGG+AGG + chr3_2:88397367-88397386 Msa0435260:CDS 40.0%
GGCAAAGACCATACCATTAT+AGG + chr3_2:88393546-88393565 Msa0435260:five_prime_UTR 40.0%
GCCAAGACTTATCTATACAG+AGG + chr3_2:88393620-88393639 Msa0435260:five_prime_UTR 40.0%
CCCTCTGTATAGATAAGTCT+TGG - chr3_2:88393624-88393643 None:intergenic 40.0%
GACTTATCTATACAGAGGGT+AGG + chr3_2:88393625-88393644 Msa0435260:five_prime_UTR 40.0%
GTAGCTAGGTTATCTAGCTA+TGG + chr3_2:88393731-88393750 Msa0435260:exon 40.0%
ACAAAGAACAGTGAGCTCAT+TGG - chr3_2:88393847-88393866 None:intergenic 40.0%
CACTGTTCTTTGTGATGCTA+AGG + chr3_2:88393854-88393873 Msa0435260:CDS 40.0%
AGAGAAAGAAACATACGAGG+CGG - chr3_2:88393934-88393953 None:intergenic 40.0%
TGACTGTAGGAATTGATCTG+TGG + chr3_2:88394063-88394082 Msa0435260:CDS 40.0%
TCTGTGGAACTCTCATTATG+AGG + chr3_2:88394079-88394098 Msa0435260:CDS 40.0%
TGTCAATAGGAATCTTCGCA+AGG + chr3_2:88394217-88394236 Msa0435260:CDS 40.0%
TGTGTGTTGTACTACGTACT+AGG + chr3_2:88394322-88394341 Msa0435260:intron 40.0%
ATGTCTGAATGATCTGAGCA+TGG + chr3_2:88394359-88394378 Msa0435260:CDS 40.0%
TCTTGAGGATGAAATGGACA+AGG + chr3_2:88394395-88394414 Msa0435260:CDS 40.0%
!! GTAGGGTTTTATAAAGGTCC+GGG + chr3_2:88395970-88395989 Msa0435260:intron 40.0%
AGTGTGACTATTGGCATGAT+AGG + chr3_2:88396131-88396150 Msa0435260:intron 40.0%
GTGTGACTATTGGCATGATA+GGG + chr3_2:88396132-88396151 Msa0435260:intron 40.0%
TGTGACTATTGGCATGATAG+GGG + chr3_2:88396133-88396152 Msa0435260:intron 40.0%
! GCAAGTGACCCAATAGATTT+TGG + chr3_2:88396166-88396185 Msa0435260:intron 40.0%
!! AGTTGACTTGTAAAGGTCGA+TGG + chr3_2:88396231-88396250 Msa0435260:intron 40.0%
!!! AGTACCAATTTTTCGAGCAG+CGG + chr3_2:88396748-88396767 Msa0435260:intron 40.0%
CAAATCAGATTGACACCCAA+AGG + chr3_2:88397002-88397021 Msa0435260:CDS 40.0%
!! TGAAATGATGGACAATGGAG+GGG + chr3_2:88397276-88397295 Msa0435260:CDS 40.0%
CATCCTAATCCTCATAATGG+AGG + chr3_2:88397367-88397386 Msa0435260:CDS 40.0%
ACAGAGGGTAGGAACTAGAA+AGG + chr3_2:88393636-88393655 Msa0435260:five_prime_UTR 45.0%
AAAGAAACATACGAGGCGGA+GGG - chr3_2:88393930-88393949 None:intergenic 45.0%
GGAATCTTCGCAAGGAGATT+AGG + chr3_2:88394225-88394244 Msa0435260:CDS 45.0%
TTGTACTACGTACTAGGCAG+AGG + chr3_2:88394328-88394347 Msa0435260:intron 45.0%
GAGGCTTCTTGAGGATGAAA+TGG + chr3_2:88394389-88394408 Msa0435260:CDS 45.0%
CTTCACCAATAGCGAATCGT+CGG + chr3_2:88394939-88394958 Msa0435260:intron 45.0%
TTCACCAATAGCGAATCGTC+GGG + chr3_2:88394940-88394959 Msa0435260:intron 45.0%
TATTGGAGAAGGGAATCGAG+AGG + chr3_2:88395113-88395132 Msa0435260:intron 45.0%
ATTGGAGAAGGGAATCGAGA+GGG + chr3_2:88395114-88395133 Msa0435260:intron 45.0%
! AATCTTAGACGTGAGGGTGT+GGG - chr3_2:88396101-88396120 None:intergenic 45.0%
TTTGCCGCTGCTCGAAAAAT+TGG - chr3_2:88396755-88396774 None:intergenic 45.0%
GATTGACACCCAAAGGAAGA+AGG + chr3_2:88397009-88397028 Msa0435260:CDS 45.0%
TGATACATACCAAGTCACGC+AGG - chr3_2:88397144-88397163 None:intergenic 45.0%
AAGCTCAATGCAAACATGCG+TGG - chr3_2:88397337-88397356 None:intergenic 45.0%
GCTCCTCCATTATGAGGATT+AGG - chr3_2:88397373-88397392 None:intergenic 45.0%
ACAGAGGGTAGGAACTAGAA+AGG + chr3_2:88393636-88393655 Msa0435260:five_prime_UTR 45.0%
AAAGAAACATACGAGGCGGA+GGG - chr3_2:88393930-88393949 None:intergenic 45.0%
GGAATCTTCGCAAGGAGATT+AGG + chr3_2:88394225-88394244 Msa0435260:CDS 45.0%
TTGTACTACGTACTAGGCAG+AGG + chr3_2:88394328-88394347 Msa0435260:intron 45.0%
GAGGCTTCTTGAGGATGAAA+TGG + chr3_2:88394389-88394408 Msa0435260:CDS 45.0%
CTTCACCAATAGCGAATCGT+CGG + chr3_2:88394939-88394958 Msa0435260:intron 45.0%
TTCACCAATAGCGAATCGTC+GGG + chr3_2:88394940-88394959 Msa0435260:intron 45.0%
TATTGGAGAAGGGAATCGAG+AGG + chr3_2:88395113-88395132 Msa0435260:intron 45.0%
ATTGGAGAAGGGAATCGAGA+GGG + chr3_2:88395114-88395133 Msa0435260:intron 45.0%
! AATCTTAGACGTGAGGGTGT+GGG - chr3_2:88396101-88396120 None:intergenic 45.0%
TTTGCCGCTGCTCGAAAAAT+TGG - chr3_2:88396755-88396774 None:intergenic 45.0%
GATTGACACCCAAAGGAAGA+AGG + chr3_2:88397009-88397028 Msa0435260:CDS 45.0%
TGATACATACCAAGTCACGC+AGG - chr3_2:88397144-88397163 None:intergenic 45.0%
AAGCTCAATGCAAACATGCG+TGG - chr3_2:88397337-88397356 None:intergenic 45.0%
GCTCCTCCATTATGAGGATT+AGG - chr3_2:88397373-88397392 None:intergenic 45.0%
!! ATATTAAAAGTTATATTTAT+TGG + chr3_2:88394144-88394163 Msa0435260:intron 5.0%
!! ATATTAAAAGTTATATTTAT+TGG + chr3_2:88394144-88394163 Msa0435260:intron 5.0%
TGGCGTGCAATCACAGACAA+TGG - chr3_2:88393604-88393623 None:intergenic 50.0%
GGTTATCTAGCTATGGCTCG+AGG + chr3_2:88393738-88393757 Msa0435260:exon 50.0%
TTCATGAAGCTTGCCAGTGC+TGG - chr3_2:88393898-88393917 None:intergenic 50.0%
AAGAAACATACGAGGCGGAG+GGG - chr3_2:88393929-88393948 None:intergenic 50.0%
GAAAGAAACATACGAGGCGG+AGG - chr3_2:88393931-88393950 None:intergenic 50.0%
ACTACGTACTAGGCAGAGGA+TGG + chr3_2:88394332-88394351 Msa0435260:intron 50.0%
CTACGTACTAGGCAGAGGAT+GGG + chr3_2:88394333-88394352 Msa0435260:intron 50.0%
TACGTACTAGGCAGAGGATG+GGG + chr3_2:88394334-88394353 Msa0435260:intron 50.0%
ATCTGAGCATGGAAGAGCTG+AGG + chr3_2:88394370-88394389 Msa0435260:CDS 50.0%
TGAAATGGACAAGGCTGCCA+AGG + chr3_2:88394404-88394423 Msa0435260:CDS 50.0%
TCGCAGCGTGTCGTACAAAA+TGG + chr3_2:88394627-88394646 Msa0435260:intron 50.0%
TTCTCCCGACGATTCGCTAT+TGG - chr3_2:88394947-88394966 None:intergenic 50.0%
TTGGAGAAGGGAATCGAGAG+GGG + chr3_2:88395115-88395134 Msa0435260:intron 50.0%
CTTAGGTGGACGTCGTGATT+GGG - chr3_2:88395577-88395596 None:intergenic 50.0%
ACTTAGGTGGACGTCGTGAT+TGG - chr3_2:88395578-88395597 None:intergenic 50.0%
CAATCTTAGACGTGAGGGTG+TGG - chr3_2:88396102-88396121 None:intergenic 50.0%
GGAGAAGGGGACACATATAG+AGG - chr3_2:88396779-88396798 None:intergenic 50.0%
! GGGGAGTATGAGTCTGTGAT+TGG + chr3_2:88397295-88397314 Msa0435260:CDS 50.0%
GCTGATGCTCCTCCATTATG+AGG - chr3_2:88397379-88397398 None:intergenic 50.0%
TGGCGTGCAATCACAGACAA+TGG - chr3_2:88393604-88393623 None:intergenic 50.0%
GGTTATCTAGCTATGGCTCG+AGG + chr3_2:88393738-88393757 Msa0435260:exon 50.0%
TTCATGAAGCTTGCCAGTGC+TGG - chr3_2:88393898-88393917 None:intergenic 50.0%
AAGAAACATACGAGGCGGAG+GGG - chr3_2:88393929-88393948 None:intergenic 50.0%
GAAAGAAACATACGAGGCGG+AGG - chr3_2:88393931-88393950 None:intergenic 50.0%
ACTACGTACTAGGCAGAGGA+TGG + chr3_2:88394332-88394351 Msa0435260:intron 50.0%
CTACGTACTAGGCAGAGGAT+GGG + chr3_2:88394333-88394352 Msa0435260:intron 50.0%
TACGTACTAGGCAGAGGATG+GGG + chr3_2:88394334-88394353 Msa0435260:intron 50.0%
ATCTGAGCATGGAAGAGCTG+AGG + chr3_2:88394370-88394389 Msa0435260:CDS 50.0%
TGAAATGGACAAGGCTGCCA+AGG + chr3_2:88394404-88394423 Msa0435260:CDS 50.0%
TCGCAGCGTGTCGTACAAAA+TGG + chr3_2:88394627-88394646 Msa0435260:intron 50.0%
TTCTCCCGACGATTCGCTAT+TGG - chr3_2:88394947-88394966 None:intergenic 50.0%
TTGGAGAAGGGAATCGAGAG+GGG + chr3_2:88395115-88395134 Msa0435260:intron 50.0%
CTTAGGTGGACGTCGTGATT+GGG - chr3_2:88395577-88395596 None:intergenic 50.0%
ACTTAGGTGGACGTCGTGAT+TGG - chr3_2:88395578-88395597 None:intergenic 50.0%
CAATCTTAGACGTGAGGGTG+TGG - chr3_2:88396102-88396121 None:intergenic 50.0%
GGAGAAGGGGACACATATAG+AGG - chr3_2:88396779-88396798 None:intergenic 50.0%
! GGGGAGTATGAGTCTGTGAT+TGG + chr3_2:88397295-88397314 Msa0435260:CDS 50.0%
GCTGATGCTCCTCCATTATG+AGG - chr3_2:88397379-88397398 None:intergenic 50.0%
ACGTACTAGGCAGAGGATGG+GGG + chr3_2:88394335-88394354 Msa0435260:intron 55.0%
GGAAGAGCTGAGGCTTCTTG+AGG + chr3_2:88394380-88394399 Msa0435260:CDS 55.0%
CTTGCGCTCACGAATAGCCT+TGG - chr3_2:88394424-88394443 None:intergenic 55.0%
CAAGGCTATTCGTGAGCGCA+AGG + chr3_2:88394422-88394441 Msa0435260:CDS 55.0%
GAAGGGAATCGAGAGGGGAA+TGG + chr3_2:88395120-88395139 Msa0435260:intron 55.0%
! TTAGACGTGAGGGTGTGGGT+GGG - chr3_2:88396097-88396116 None:intergenic 55.0%
CAACAGACTCCTGCGTGACT+TGG + chr3_2:88397132-88397151 Msa0435260:CDS 55.0%
AGGGTAAGTGGTGAGATCCG+AGG - chr3_2:88397404-88397423 None:intergenic 55.0%
ACGTACTAGGCAGAGGATGG+GGG + chr3_2:88394335-88394354 Msa0435260:intron 55.0%
GGAAGAGCTGAGGCTTCTTG+AGG + chr3_2:88394380-88394399 Msa0435260:CDS 55.0%
CTTGCGCTCACGAATAGCCT+TGG - chr3_2:88394424-88394443 None:intergenic 55.0%
CAAGGCTATTCGTGAGCGCA+AGG + chr3_2:88394422-88394441 Msa0435260:CDS 55.0%
GAAGGGAATCGAGAGGGGAA+TGG + chr3_2:88395120-88395139 Msa0435260:intron 55.0%
! TTAGACGTGAGGGTGTGGGT+GGG - chr3_2:88396097-88396116 None:intergenic 55.0%
CAACAGACTCCTGCGTGACT+TGG + chr3_2:88397132-88397151 Msa0435260:CDS 55.0%
AGGGTAAGTGGTGAGATCCG+AGG - chr3_2:88397404-88397423 None:intergenic 55.0%
! GTGAGGGTGTGGGTGGGAAT+GGG - chr3_2:88396091-88396110 None:intergenic 60.0%
! CTTAGACGTGAGGGTGTGGG+TGG - chr3_2:88396098-88396117 None:intergenic 60.0%
!! TGGAGGAGCATCAGCTGCCT+CGG + chr3_2:88397384-88397403 Msa0435260:CDS 60.0%
! GTGAGGGTGTGGGTGGGAAT+GGG - chr3_2:88396091-88396110 None:intergenic 60.0%
! CTTAGACGTGAGGGTGTGGG+TGG - chr3_2:88396098-88396117 None:intergenic 60.0%
!! TGGAGGAGCATCAGCTGCCT+CGG + chr3_2:88397384-88397403 Msa0435260:CDS 60.0%
! CGTGAGGGTGTGGGTGGGAA+TGG - chr3_2:88396092-88396111 None:intergenic 65.0%
! CGTGAGGGTGTGGGTGGGAA+TGG - chr3_2:88396092-88396111 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 88393546 88397663 88393546 ID=Msa0435260;Name=Msa0435260
chr3_2 mRNA 88393546 88397663 88393546 ID=Msa0435260-mRNA-1;Parent=Msa0435260;Name=Msa0435260-mRNA-1;_AED=0.18;_eAED=0.18;_QI=204|1|1|1|1|1|7|228|229
chr3_2 exon 88393546 88393937 88393546 ID=Msa0435260-mRNA-1:exon:25997;Parent=Msa0435260-mRNA-1
chr3_2 exon 88394034 88394100 88394034 ID=Msa0435260-mRNA-1:exon:25998;Parent=Msa0435260-mRNA-1
chr3_2 exon 88394185 88394246 88394185 ID=Msa0435260-mRNA-1:exon:25999;Parent=Msa0435260-mRNA-1
chr3_2 exon 88394344 88394443 88394344 ID=Msa0435260-mRNA-1:exon:26000;Parent=Msa0435260-mRNA-1
chr3_2 exon 88396989 88397030 88396989 ID=Msa0435260-mRNA-1:exon:26001;Parent=Msa0435260-mRNA-1
chr3_2 exon 88397109 88397153 88397109 ID=Msa0435260-mRNA-1:exon:26002;Parent=Msa0435260-mRNA-1
chr3_2 exon 88397250 88397663 88397250 ID=Msa0435260-mRNA-1:exon:26003;Parent=Msa0435260-mRNA-1
chr3_2 five_prime_UTR 88393546 88393749 88393546 ID=Msa0435260-mRNA-1:five_prime_utr;Parent=Msa0435260-mRNA-1
chr3_2 CDS 88393750 88393937 88393750 ID=Msa0435260-mRNA-1:cds;Parent=Msa0435260-mRNA-1
chr3_2 CDS 88394034 88394100 88394034 ID=Msa0435260-mRNA-1:cds;Parent=Msa0435260-mRNA-1
chr3_2 CDS 88394185 88394246 88394185 ID=Msa0435260-mRNA-1:cds;Parent=Msa0435260-mRNA-1
chr3_2 CDS 88394344 88394443 88394344 ID=Msa0435260-mRNA-1:cds;Parent=Msa0435260-mRNA-1
chr3_2 CDS 88396989 88397030 88396989 ID=Msa0435260-mRNA-1:cds;Parent=Msa0435260-mRNA-1
chr3_2 CDS 88397109 88397153 88397109 ID=Msa0435260-mRNA-1:cds;Parent=Msa0435260-mRNA-1
chr3_2 CDS 88397250 88397435 88397250 ID=Msa0435260-mRNA-1:cds;Parent=Msa0435260-mRNA-1
chr3_2 three_prime_UTR 88397436 88397663 88397436 ID=Msa0435260-mRNA-1:three_prime_utr;Parent=Msa0435260-mRNA-1
Gene Sequence

>Msa0435260

ATGGCTCGAGGAAAGATCCAGATCAAGAGAATAGAGAACACAACGAACAGACAAGTAACTTACTCAAAACGAAGGAATGGTCTTTTCAAGAAGGCCAATGAGCTCACTGTTCTTTGTGATGCTAAGGTTTCTATTATTATGTTTTCCAGCACTGGCAAGCTTCATGAATACATTAGCCCCTCCGCCTCAACAAAGCAGTTTTTCGATCAATATCAGATGACTGTAGGAATTGATCTGTGGAACTCTCATTATGAGAATATGCAAGAGAACTTGAAGAAACTGAAAGATGTCAATAGGAATCTTCGCAAGGAGATTAGGCAGAGGATGGGGGAATGTCTGAATGATCTGAGCATGGAAGAGCTGAGGCTTCTTGAGGATGAAATGGACAAGGCTGCCAAGGCTATTCGTGAGCGCAAGTATAAGGTGATAACAAATCAGATTGACACCCAAAGGAAGAAGTTTAATAATGAGAGAGAGGTGCACAACAGACTCCTGCGTGACTTGGATGCAAGAGCAGAAGATCCACGTTTTGAAATGATGGACAATGGAGGGGAGTATGAGTCTGTGATTGGATTCTCAAATTTAGGTCCACGCATGTTTGCATTGAGCTTGCAGCCTACTCATCCTAATCCTCATAATGGAGGAGCATCAGCTGCCTCGGATCTCACCACTTACCCTTTACTTTTTTAG
Protein sequence

>Msa0435260

MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSASTKQFFDQYQMTVGIDLWNSHYENMQENLKKLKDVNRNLRKEIRQRMGECLNDLSMEELRLLEDEMDKAAKAIRERKYKVITNQIDTQRKKFNNEREVHNRLLRDLDARAEDPRFEMMDNGGEYESVIGFSNLGPRMFALSLQPTHPNPHNGGASAASDLTTYPLLF*