AlfalfaGEDB | Msa0435260

M. sativa cultivar zhongmu-4 / Msa0435260

KEGG: K09264
GO: GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010093 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0435260	XP_003603721.1	100.000	229	0	0	1	229	1	229	5.28e-171	479

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0435260	sp\|E0CPH4\|AP3_VITVI	69.507	223	66	1	1	223	1	221	3.68e-110	318

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0435260	G7J4N1	100.000	229	0	0	1	229	1	229	2.52e-171	479

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0435260	TF	MADS-MIKC

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0435260	MtrunA17_Chr3g0142191	100.000	229	0	0	1	229	1	229	4.86e-175	479
Msa0435260	MtrunA17_Chr5g0404951	54.091	220	95	4	1	215	1	219	1.38e-75	228
Msa0435260	MtrunA17_Chr3g0125241	45.775	142	77	0	1	142	26	167	1.86e-43	145
Msa0435260	MtrunA17_Chr1g0159661	43.662	142	80	0	1	142	1	142	3.38e-39	133
Msa0435260	MtrunA17_Chr2g0279821	41.463	164	80	3	1	155	1	157	3.01e-35	125
Msa0435260	MtrunA17_Chr8g0351041	43.125	160	81	3	1	153	1	157	2.73e-33	117
Msa0435260	MtrunA17_Chr4g0049541	37.313	201	102	4	1	192	1	186	8.81e-33	118
Msa0435260	MtrunA17_Chr2g0284911	39.801	201	102	5	1	187	16	211	1.10e-32	119
Msa0435260	MtrunA17_Chr8g0380021	42.424	165	89	3	1	162	17	178	1.49e-32	118
Msa0435260	MtrunA17_Chr4g0057151	42.581	155	78	3	1	148	1	151	1.67e-32	117

Showing 1 to 10 of 86 entries

Previous1 2 3 4 5…9Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0435260	AT3G54340.1	56.897	232	95	2	1	228	1	231	7.58e-94	275
Msa0435260	AT5G20240.1	36.019	211	120	2	1	210	1	197	5.36e-40	137
Msa0435260	AT5G20240.2	43.662	142	80	0	1	142	1	142	1.07e-37	129
Msa0435260	AT4G18960.1	35.537	242	134	7	2	228	18	252	5.02e-36	128
Msa0435260	AT5G60910.1	44.068	177	91	3	1	171	1	175	3.94e-35	125
Msa0435260	AT4G11880.2	43.750	160	79	4	1	153	1	156	1.08e-33	119
Msa0435260	AT4G11880.3	43.750	160	79	4	1	153	1	156	1.08e-33	119
Msa0435260	AT5G13790.2	44.767	172	81	5	1	166	1	164	1.44e-33	122
Msa0435260	AT4G11880.4	46.000	150	70	4	1	143	1	146	2.73e-33	120
Msa0435260	AT4G11880.1	46.000	150	70	4	1	143	1	146	2.73e-33	120

Showing 1 to 10 of 141 entries

Previous1 2 3 4 5…15Next

Find 64 sgRNAs with CRISPR-Local

Find 412 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAACATACGAGGCGGA+GGG	0.606316	3_2:-88393927	None:intergenic
AAGAAACATACGAGGCGGAG+GGG	0.689447	3_2:-88393926	None:intergenic
AAGCTCAATGCAAACATGCG+TGG	0.675598	3_2:-88397334	None:intergenic
AAGTAACTTACTCAAAACGA+AGG	0.681799	3_2:+88393802	Msa0435260:CDS
ACAAAGAACAGTGAGCTCAT+TGG	0.534621	3_2:-88393844	None:intergenic
ACAGAGGGTAGGAACTAGAA+AGG	0.552507	3_2:+88393636	Msa0435260:five_prime_UTR
ACGTACTAGGCAGAGGATGG+GGG	0.634592	3_2:+88394335	Msa0435260:intron
ACTACGTACTAGGCAGAGGA+TGG	0.565678	3_2:+88394332	Msa0435260:intron
ACTCATCCTAATCCTCATAA+TGG	0.416488	3_2:+88397364	Msa0435260:CDS
ACTTACTCAAAACGAAGGAA+TGG	0.578899	3_2:+88393807	Msa0435260:CDS

Showing 1 to 10 of 64 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATGCATTTCCTATAATGGTA+TGG	-	chr3_2:88393557-88393576	None:intergenic	30.0%
AAGTAACTTACTCAAAACGA+AGG	+	chr3_2:88393802-88393821	Msa0435260:CDS	30.0%
ATAAATAGAGAAGCTAGCTA+GGG	-	chr3_2:88393959-88393978	None:intergenic	30.0%
AGAAAAAGGAAAAGGGAAAA+TGG	-	chr3_2:88394111-88394130	None:intergenic	30.0%
AAGTTCTCTTGCATATTCTA+TGG	-	chr3_2:88394182-88394201	None:intergenic	30.0%
AGAAACTGAAAGATGTCAAT+AGG	+	chr3_2:88394204-88394223	Msa0435260:CDS	30.0%
TCAACTAAATTCTATGTCTC+TGG	-	chr3_2:88394584-88394603	None:intergenic	30.0%
TAAAATGCATTAATGAGTCC+TGG	+	chr3_2:88394851-88394870	Msa0435260:intron	30.0%
TTCAACTCAATAATCGAACT+CGG	-	chr3_2:88394971-88394990	None:intergenic	30.0%
ATGTGTAAATTACACATGAG+AGG	-	chr3_2:88395148-88395167	None:intergenic	30.0%

Showing 1 to 10 of 412 entries

Previous1 2 3 4 5…42Next

Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	88393546	88397663	88393546	ID=Msa0435260;Name=Msa0435260
chr3_2	mRNA	88393546	88397663	88393546	ID=Msa0435260-mRNA-1;Parent=Msa0435260;Name=Msa0435260-mRNA-1;_AED=0.18;_eAED=0.18;_QI=204\|1\|1\|1\|1\|1\|7\|228\|229
chr3_2	exon	88393546	88393937	88393546	ID=Msa0435260-mRNA-1:exon:25997;Parent=Msa0435260-mRNA-1
chr3_2	exon	88394034	88394100	88394034	ID=Msa0435260-mRNA-1:exon:25998;Parent=Msa0435260-mRNA-1
chr3_2	exon	88394185	88394246	88394185	ID=Msa0435260-mRNA-1:exon:25999;Parent=Msa0435260-mRNA-1
chr3_2	exon	88394344	88394443	88394344	ID=Msa0435260-mRNA-1:exon:26000;Parent=Msa0435260-mRNA-1
chr3_2	exon	88396989	88397030	88396989	ID=Msa0435260-mRNA-1:exon:26001;Parent=Msa0435260-mRNA-1
chr3_2	exon	88397109	88397153	88397109	ID=Msa0435260-mRNA-1:exon:26002;Parent=Msa0435260-mRNA-1
chr3_2	exon	88397250	88397663	88397250	ID=Msa0435260-mRNA-1:exon:26003;Parent=Msa0435260-mRNA-1
chr3_2	five_prime_UTR	88393546	88393749	88393546	ID=Msa0435260-mRNA-1:five_prime_utr;Parent=Msa0435260-mRNA-1
chr3_2	CDS	88393750	88393937	88393750	ID=Msa0435260-mRNA-1:cds;Parent=Msa0435260-mRNA-1
chr3_2	CDS	88394034	88394100	88394034	ID=Msa0435260-mRNA-1:cds;Parent=Msa0435260-mRNA-1
chr3_2	CDS	88394185	88394246	88394185	ID=Msa0435260-mRNA-1:cds;Parent=Msa0435260-mRNA-1
chr3_2	CDS	88394344	88394443	88394344	ID=Msa0435260-mRNA-1:cds;Parent=Msa0435260-mRNA-1
chr3_2	CDS	88396989	88397030	88396989	ID=Msa0435260-mRNA-1:cds;Parent=Msa0435260-mRNA-1
chr3_2	CDS	88397109	88397153	88397109	ID=Msa0435260-mRNA-1:cds;Parent=Msa0435260-mRNA-1
chr3_2	CDS	88397250	88397435	88397250	ID=Msa0435260-mRNA-1:cds;Parent=Msa0435260-mRNA-1
chr3_2	three_prime_UTR	88397436	88397663	88397436	ID=Msa0435260-mRNA-1:three_prime_utr;Parent=Msa0435260-mRNA-1

Gene Sequence

>Msa0435260

ATGGCTCGAGGAAAGATCCAGATCAAGAGAATAGAGAACACAACGAACAGACAAGTAACTTACTCAAAACGAAGGAATGGTCTTTTCAAGAAGGCCAATGAGCTCACTGTTCTTTGTGATGCTAAGGTTTCTATTATTATGTTTTCCAGCACTGGCAAGCTTCATGAATACATTAGCCCCTCCGCCTCAACAAAGCAGTTTTTCGATCAATATCAGATGACTGTAGGAATTGATCTGTGGAACTCTCATTATGAGAATATGCAAGAGAACTTGAAGAAACTGAAAGATGTCAATAGGAATCTTCGCAAGGAGATTAGGCAGAGGATGGGGGAATGTCTGAATGATCTGAGCATGGAAGAGCTGAGGCTTCTTGAGGATGAAATGGACAAGGCTGCCAAGGCTATTCGTGAGCGCAAGTATAAGGTGATAACAAATCAGATTGACACCCAAAGGAAGAAGTTTAATAATGAGAGAGAGGTGCACAACAGACTCCTGCGTGACTTGGATGCAAGAGCAGAAGATCCACGTTTTGAAATGATGGACAATGGAGGGGAGTATGAGTCTGTGATTGGATTCTCAAATTTAGGTCCACGCATGTTTGCATTGAGCTTGCAGCCTACTCATCCTAATCCTCATAATGGAGGAGCATCAGCTGCCTCGGATCTCACCACTTACCCTTTACTTTTTTAG

Protein sequence

>Msa0435260

MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSASTKQFFDQYQMTVGIDLWNSHYENMQENLKKLKDVNRNLRKEIRQRMGECLNDLSMEELRLLEDEMDKAAKAIRERKYKVITNQIDTQRKKFNNEREVHNRLLRDLDARAEDPRFEMMDNGGEYESVIGFSNLGPRMFALSLQPTHPNPHNGGASAASDLTTYPLLF*