AlfalfaGEDB | Msa0439530

M. sativa cultivar zhongmu-4 / Msa0439530

KEGG: K08867
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0439530	XP_013459948.1	96.181	288	11	0	1	288	1	288	0.0	585

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0439530	sp\|Q6ICW6\|WNK11_ARATH	80.144	277	55	0	11	287	16	292	1.17e-173	488

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0439530	A0A072UVY5	96.181	288	11	0	1	288	1	288	0.0	585

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0439530	MtrunA17_Chr3g0101111	96.181	288	11	0	1	288	1	288	0.0	585
Msa0439530	MtrunA17_Chr3g0101091	95.833	288	12	0	1	288	1	288	0.0	583
Msa0439530	MtrunA17_Chr3g0101081	95.833	288	12	0	1	288	1	288	0.0	583
Msa0439530	MtrunA17_Chr7g0225201	90.175	285	28	0	1	285	2	286	0.0	548
Msa0439530	MtrunA17_Chr3g0132681	88.055	293	32	2	1	290	1	293	0.0	536
Msa0439530	MtrunA17_Chr5g0445271	82.746	284	49	0	1	284	2	285	0.0	506
Msa0439530	MtrunA17_Chr5g0447731	77.174	276	63	0	14	289	11	286	7.52e-168	469
Msa0439530	MtrunA17_Chr7g0273851	62.007	279	103	2	12	288	10	287	1.04e-122	369
Msa0439530	MtrunA17_Chr3g0116811	59.868	304	121	1	2	305	3	305	6.36e-122	363
Msa0439530	MtrunA17_Chr1g0205471	63.214	280	98	4	11	288	10	286	3.68e-121	365

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0439530	AT5G55560.1	80.144	277	55	0	11	287	16	292	1.18e-174	488
Msa0439530	AT3G48260.1	64.576	271	96	0	14	284	10	280	4.70e-128	377
Msa0439530	AT3G04910.1	62.724	279	101	2	12	288	10	287	3.60e-121	365
Msa0439530	AT5G28080.2	54.232	319	136	4	4	320	1	311	7.58e-119	352
Msa0439530	AT3G22420.1	58.333	276	114	1	11	286	9	283	8.87e-119	355
Msa0439530	AT3G22420.5	58.333	276	114	1	11	286	9	283	1.24e-118	355
Msa0439530	AT3G22420.4	58.333	276	114	1	11	286	80	354	2.75e-118	356
Msa0439530	AT3G22420.3	58.333	276	114	1	11	286	80	354	4.93e-118	356
Msa0439530	AT3G51630.1	61.172	273	106	0	12	284	11	283	1.14e-116	349
Msa0439530	AT3G51630.2	61.172	273	106	0	12	284	11	283	1.14e-116	349

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Find 66 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGTCTCGCTCAACCA+AGG	0.579858	3_3:+5682154	Msa0439530:CDS
AAAGCATTTGATAATGAAGA+AGG	0.455941	3_3:+5681400	Msa0439530:CDS
AAAGTCTTTCAATCATTGCA+GGG	0.617274	3_3:-5681471	None:intergenic
AAAGTGTCTCGCTCAACCAA+GGG	0.644670	3_3:+5682155	Msa0439530:CDS
AAATGTTTCTGAGTCTTTGT+GGG	0.505016	3_3:-5681302	None:intergenic
AAGAAGGGATAGAAGTAGCA+TGG	0.500540	3_3:+5681416	Msa0439530:CDS
AAGCATTTGATAATGAAGAA+GGG	0.523892	3_3:+5681401	Msa0439530:CDS
AAGGGCTAGACCTTCTGCTG+AGG	0.666215	3_3:+5682173	Msa0439530:CDS
AATGTATATTAGGTTAAGAT+TGG	0.380565	3_3:+5681859	Msa0439530:intron
ACATAAGCATGTTTCTATTA+AGG	0.226294	3_3:+5681636	Msa0439530:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTCTTTCAATCATTGCA+GGG	-	chr3_3:5681474-5681493	None:intergenic	30.0%
TAAAGTCTTTCAATCATTGC+AGG	-	chr3_3:5681475-5681494	None:intergenic	30.0%
TGAAACAGAAATAATGTACC+TGG	-	chr3_3:5681780-5681799	None:intergenic	30.0%
ATGGTAGACATATACTCATT+TGG	+	chr3_3:5681988-5682007	Msa0439530:CDS	30.0%
TGGAATGTTAGTATTAGAGA+TGG	+	chr3_3:5682008-5682027	Msa0439530:CDS	30.0%
ACATTGTCACATTCACTATA+TGG	-	chr3_3:5682048-5682067	None:intergenic	30.0%
TGTTGCAAAGATATACAAGA+AGG	+	chr3_3:5682065-5682084	Msa0439530:CDS	30.0%
TTTATCTTGTTCAAGGATTG+CGG	-	chr3_3:5682108-5682127	None:intergenic	30.0%
GTTTCATTCCTATAAGCTTT+AGG	+	chr3_3:5682604-5682623	Msa0439530:intron	30.0%
CAAATTGTCCTAAAGCTTAT+AGG	-	chr3_3:5682615-5682634	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	5681277	5683071	5681277	ID=Msa0439530;Name=Msa0439530
chr3_3	mRNA	5681277	5683071	5681277	ID=Msa0439530-mRNA-1;Parent=Msa0439530;Name=Msa0439530-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0\|0\|0\|0.66\|1\|1\|3\|0\|353
chr3_3	exon	5681277	5681780	5681277	ID=Msa0439530-mRNA-1:exon:1148;Parent=Msa0439530-mRNA-1
chr3_3	exon	5681871	5682229	5681871	ID=Msa0439530-mRNA-1:exon:1149;Parent=Msa0439530-mRNA-1
chr3_3	exon	5682873	5683071	5682873	ID=Msa0439530-mRNA-1:exon:1150;Parent=Msa0439530-mRNA-1
chr3_3	CDS	5681277	5681780	5681277	ID=Msa0439530-mRNA-1:cds;Parent=Msa0439530-mRNA-1
chr3_3	CDS	5681871	5682229	5681871	ID=Msa0439530-mRNA-1:cds;Parent=Msa0439530-mRNA-1
chr3_3	CDS	5682873	5683071	5682873	ID=Msa0439530-mRNA-1:cds;Parent=Msa0439530-mRNA-1

Gene Sequence

>Msa0439530

ATGCCAAGTGTTCAACAAAATCCATCCCACAAAGACTCAGAAACATTTGTTGAAACTGATCCAACCGGAAGATATGGAAGATACGATGAATTACTTGGAGCTGGTGCTTGTAAAAAAGTCTATAAAGCATTTGATAATGAAGAAGGGATAGAAGTAGCATGGAATCAAGTTAAGCTCAGAAATTTCAGCAATGACCCTGCAATGATTGAAAGACTTTACTCTGAAGTGAGACTTCTTAGAAACATGAGAAACAAAAACATCATTGCACTTTACAGTGTTTGGAGAGACAAGGAGCATAGCACACTGAATTTCATCACCGAGGTTTGTACAAGTGGGAATTTGAGGGAGTATAGGAAGAAACATAAGCATGTTTCTATTAAGGCTTTGAAGAAGTGGTCTAAGAAAATTTTGGAAGGGTTGAATTATTTACATGTGCATGATCCTTGTATCATTCATAGAGACCTCAACTGCAGTAATGTTTTTGTCAATGGAAATACTGGCCAGGTTAAGATTGGTGACTTAGGTTTGGCAGCAATTGTGGGAAAGAATCATTCAGCGCATTCAGTTCTAGGCACACCGGAATTTATGGCACCAGAGCTATATGAAGAGGATTACACAGAAATGGTAGACATATACTCATTTGGAATGTTAGTATTAGAGATGGTGACACTAGAGATTCCATATAGTGAATGTGACAATGTTGCAAAGATATACAAGAAGGTGACTTCAGGTGTGAGACCGCAATCCTTGAACAAGATAAAAGATGTAGAAGTGAAGACTTTCATCGAAAAGTGTCTCGCTCAACCAAGGGCTAGACCTTCTGCTGAGGAATTGCTAAAGGATCCTTTTTTTGATGATGTTGAGTCTGTAGCTGTCCTTGGTACAAATGCACGCCATCGTACCTCGTTGGGTGGCTGTTTTGACGCTGTCAAGGGTACATCTGCTGCTGTCTGTTACCATAGGGCCGGTAGCGCACTTGTTTTGTGGGCAGGAAGCATGAAGATGTGGATCTCTTGTTCATCAAAAATGATTTTTTTGCCAAAATTGGTCATTAATGTATGA

Protein sequence

>Msa0439530

MPSVQQNPSHKDSETFVETDPTGRYGRYDELLGAGACKKVYKAFDNEEGIEVAWNQVKLRNFSNDPAMIERLYSEVRLLRNMRNKNIIALYSVWRDKEHSTLNFITEVCTSGNLREYRKKHKHVSIKALKKWSKKILEGLNYLHVHDPCIIHRDLNCSNVFVNGNTGQVKIGDLGLAAIVGKNHSAHSVLGTPEFMAPELYEEDYTEMVDIYSFGMLVLEMVTLEIPYSECDNVAKIYKKVTSGVRPQSLNKIKDVEVKTFIEKCLAQPRARPSAEELLKDPFFDDVESVAVLGTNARHRTSLGGCFDAVKGTSAAVCYHRAGSALVLWAGSMKMWISCSSKMIFLPKLVINV*