AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0441870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0441870 MtrunA17_Chr3g0079691 98.295 704 10 1 1 702 1 704 0.0 1427
Msa0441870 MtrunA17_Chr3g0101131 43.943 487 197 14 109 573 60 492 6.75e-103 327
Msa0441870 MtrunA17_Chr7g0249311 52.078 361 157 7 211 564 110 461 1.56e-101 325
Msa0441870 MtrunA17_Chr7g0249311 51.389 72 34 1 280 350 392 463 5.49e-14 75.5
Msa0441870 MtrunA17_Chr5g0445311 40.638 470 182 12 109 561 41 430 5.67e-89 288
Msa0441870 MtrunA17_Chr5g0445311 48.148 81 39 2 495 575 200 277 9.46e-14 74.7
Msa0441870 MtrunA17_Chr5g0432161 42.251 471 179 13 112 559 85 485 7.42e-89 289
Msa0441870 MtrunA17_Chr7g0218081 51.495 301 104 9 278 574 226 488 3.87e-85 278
Msa0441870 MtrunA17_Chr7g0249301 48.225 338 106 9 260 557 46 354 4.93e-84 270
Msa0441870 MtrunA17_Chr7g0249301 46.078 102 43 5 494 586 61 159 6.92e-15 77.0
Msa0441870 MtrunA17_Chr5g0418191 48.718 312 106 7 262 571 136 395 3.55e-82 267
Msa0441870 MtrunA17_Chr5g0418191 47.525 101 42 5 495 587 151 248 1.10e-16 83.2
Msa0441870 MtrunA17_Chr7g0243891 40.132 456 204 10 112 565 56 444 1.15e-81 269
Msa0441870 MtrunA17_Chr7g0243891 48.276 87 38 3 495 577 216 299 6.46e-16 81.3
Msa0441870 MtrunA17_Chr7g0263531 38.987 395 173 10 176 554 78 420 1.63e-69 234
Msa0441870 MtrunA17_Chr4g0004911 67.717 127 34 3 436 557 274 398 3.29e-47 174
Msa0441870 MtrunA17_Chr4g0004911 34.263 251 116 7 102 343 38 248 6.86e-26 112
Msa0441870 MtrunA17_Chr4g0004911 47.778 90 38 2 467 556 165 245 6.25e-17 84.3
Msa0441870 MtrunA17_Chr4g0004911 55.000 60 26 1 280 338 336 395 4.80e-13 72.0
Msa0441870 MtrunA17_Chr3g0106491 60.870 138 51 1 425 559 292 429 1.54e-45 170
Msa0441870 MtrunA17_Chr3g0106491 39.574 235 108 6 110 343 60 261 4.27e-36 142
Msa0441870 MtrunA17_Chr3g0106491 54.545 77 26 3 486 556 185 258 4.01e-15 79.0
Msa0441870 MtrunA17_Chr3g0106491 55.556 72 30 2 280 350 365 435 2.53e-14 76.3
Msa0441870 MtrunA17_Chr4g0042831 56.429 140 51 2 433 571 224 354 1.37e-41 155
Msa0441870 MtrunA17_Chr4g0042831 60.976 82 29 2 262 342 129 208 7.02e-24 104
Msa0441870 MtrunA17_Chr4g0042831 60.000 60 23 1 280 338 278 337 2.70e-14 75.5
Msa0441870 MtrunA17_Chr4g0042831 53.425 73 32 1 495 567 145 215 4.12e-14 74.7
Msa0441870 MtrunA17_Chr1g0188941 63.095 84 31 0 471 554 27 110 2.47e-34 126
Msa0441870 MtrunA17_Chr1g0188941 51.613 62 29 1 280 340 51 112 3.24e-15 72.4
Msa0441870 MtrunA17_Chr8g0335811 65.789 76 26 0 476 551 135 210 3.95e-30 119
Msa0441870 MtrunA17_Chr8g0335811 61.404 57 21 1 280 335 154 210 1.12e-16 79.7
Msa0441870 MtrunA17_Chr5g0447701 57.000 100 42 1 459 557 215 314 2.31e-29 120
Msa0441870 MtrunA17_Chr5g0447701 61.667 60 23 0 279 338 91 150 6.01e-20 92.8
Msa0441870 MtrunA17_Chr5g0447701 43.636 110 47 5 246 349 220 320 2.45e-14 75.5
Msa0441870 MtrunA17_Chr5g0447701 50.000 64 31 1 493 556 90 152 1.60e-11 66.6
Msa0441870 MtrunA17_Chr7g0270191 60.465 86 34 0 479 564 129 214 3.22e-28 115
Msa0441870 MtrunA17_Chr7g0270191 57.353 68 28 1 280 346 145 212 1.88e-17 83.6
Msa0441870 MtrunA17_Chr2g0294231 65.385 78 27 0 479 556 187 264 1.20e-27 115
Msa0441870 MtrunA17_Chr2g0294231 57.812 64 26 1 280 342 203 266 4.50e-17 84.0
Msa0441870 MtrunA17_Chr3g0129361 62.162 74 28 0 478 551 127 200 1.27e-27 111
Msa0441870 MtrunA17_Chr3g0129361 56.140 57 24 1 280 335 144 200 1.38e-14 73.6
Msa0441870 MtrunA17_Chr4g0051881 64.474 76 27 0 481 556 164 239 1.60e-27 114
Msa0441870 MtrunA17_Chr4g0051881 64.062 64 22 1 280 342 178 241 8.64e-19 88.6
Msa0441870 MtrunA17_Chr5g0418781 64.474 76 27 0 476 551 105 180 3.40e-27 111
Msa0441870 MtrunA17_Chr5g0418781 64.912 57 19 1 280 335 124 180 4.76e-17 82.0
Msa0441870 MtrunA17_Chr1g0194481 59.036 83 34 0 479 561 142 224 1.63e-26 110
Msa0441870 MtrunA17_Chr1g0194481 54.054 74 33 1 280 352 158 231 1.28e-18 87.8
Msa0441870 MtrunA17_Chr4g0074001 50.485 103 50 1 456 557 319 421 2.88e-26 113
Msa0441870 MtrunA17_Chr4g0074001 50.667 75 32 2 272 345 355 425 3.75e-16 82.0
Msa0441870 MtrunA17_Chr4g0074001 52.632 76 33 2 272 346 178 251 9.44e-16 80.9
Msa0441870 MtrunA17_Chr8g0383351 61.333 75 28 1 478 551 142 216 3.76e-26 107
Msa0441870 MtrunA17_Chr8g0383351 56.140 57 24 1 280 335 160 216 8.63e-15 74.7
Msa0441870 MtrunA17_Chr5g0443131 60.526 76 30 0 481 556 143 218 7.31e-26 108
Msa0441870 MtrunA17_Chr5g0443131 59.375 64 25 1 280 342 157 220 6.54e-17 82.4
Msa0441870 MtrunA17_Chr8g0383251 50.000 88 44 0 482 569 95 182 2.23e-25 103
Msa0441870 MtrunA17_Chr8g0383251 46.667 75 39 1 280 353 108 182 2.36e-12 66.2
Msa0441870 MtrunA17_Chr1g0150801 56.627 83 34 1 471 551 76 158 2.57e-25 102
Msa0441870 MtrunA17_Chr1g0150801 51.724 58 27 1 280 336 102 159 9.22e-14 69.7
Msa0441870 MtrunA17_Chr7g0224801 64.706 68 24 0 486 553 84 151 6.98e-25 102
Msa0441870 MtrunA17_Chr7g0224801 53.448 58 26 1 280 336 93 150 1.39e-15 75.1
Msa0441870 MtrunA17_Chr8g0386241 49.495 99 48 1 461 559 71 167 1.23e-24 101
Msa0441870 MtrunA17_Chr8g0386241 51.724 58 27 1 280 336 103 160 7.19e-15 73.6
Msa0441870 MtrunA17_Chr4g0075201 48.039 102 52 1 456 556 228 329 3.63e-24 106
Msa0441870 MtrunA17_Chr4g0075201 41.935 93 52 2 249 339 236 328 1.20e-14 77.0
Msa0441870 MtrunA17_Chr7g0248721 48.598 107 48 2 445 551 97 196 1.57e-23 99.4
Msa0441870 MtrunA17_Chr7g0248721 44.898 98 39 4 252 336 102 197 5.25e-16 77.8
Msa0441870 MtrunA17_Chr2g0288871 38.411 151 86 2 411 554 215 365 2.07e-23 105
Msa0441870 MtrunA17_Chr2g0288871 44.086 93 50 2 249 339 274 366 1.56e-16 83.6
Msa0441870 MtrunA17_Chr3g0129321 48.387 93 48 0 481 573 104 196 2.43e-23 98.6
Msa0441870 MtrunA17_Chr3g0129321 55.000 60 26 1 280 338 118 177 2.67e-14 72.4
Msa0441870 MtrunA17_Chr7g0270831 50.000 92 44 2 478 567 199 290 2.89e-23 103
Msa0441870 MtrunA17_Chr7g0270831 54.098 61 26 2 281 339 217 277 5.82e-14 74.7
Msa0441870 MtrunA17_Chr1g0189391 42.143 140 71 5 439 570 36 173 4.69e-23 100
Msa0441870 MtrunA17_Chr2g0322391 53.571 84 38 1 474 556 328 411 1.01e-22 103
Msa0441870 MtrunA17_Chr2g0322391 42.683 82 44 3 281 360 350 430 3.04e-12 69.7
Msa0441870 MtrunA17_Chr4g0068541 52.381 84 40 0 479 562 192 275 1.27e-22 101
Msa0441870 MtrunA17_Chr4g0068541 52.174 69 32 1 280 347 208 276 1.29e-15 79.7
Msa0441870 MtrunA17_Chr3g0099641 52.564 78 36 1 478 554 234 311 2.48e-22 100
Msa0441870 MtrunA17_Chr3g0099641 42.683 82 44 3 281 360 252 332 1.00e-13 74.3
Msa0441870 MtrunA17_Chr4g0051181 55.128 78 34 1 479 555 227 304 3.40e-22 100
Msa0441870 MtrunA17_Chr4g0051181 51.667 60 27 2 281 338 244 303 4.17e-12 69.3
Msa0441870 MtrunA17_Chr2g0302391 30.894 246 136 9 362 581 62 299 1.56e-21 98.2
Msa0441870 MtrunA17_Chr2g0302391 39.362 94 54 3 251 342 183 275 6.36e-13 71.2
Msa0441870 MtrunA17_Chr4g0060271 51.948 77 36 1 479 554 239 315 2.64e-21 98.6
Msa0441870 MtrunA17_Chr4g0060271 40.000 100 55 4 244 338 216 315 1.67e-12 70.9
Msa0441870 MtrunA17_Chr4g0025061 48.315 89 45 1 469 556 334 422 4.25e-21 98.2
Msa0441870 MtrunA17_Chr4g0025061 43.750 64 34 2 281 342 361 424 6.87e-11 65.5
Msa0441870 MtrunA17_Chr6g0485431 38.732 142 75 3 425 554 73 214 4.75e-21 95.5
Msa0441870 MtrunA17_Chr6g0485431 46.154 65 33 2 281 343 155 219 1.89e-11 66.2
Msa0441870 MtrunA17_Chr5g0432071 60.938 64 25 0 280 343 104 167 5.17e-21 92.0
Msa0441870 MtrunA17_Chr5g0432071 53.226 62 28 1 495 556 104 164 6.00e-14 71.6
Msa0441870 MtrunA17_Chr4g0053281 48.864 88 41 2 476 562 250 334 1.80e-20 93.6
Msa0441870 MtrunA17_Chr4g0053281 50.877 57 26 2 281 335 267 323 9.59e-12 67.0
Msa0441870 MtrunA17_Chr1g0147881 52.439 82 38 1 476 556 243 324 5.27e-20 92.0
Msa0441870 MtrunA17_Chr1g0147881 39.326 89 51 3 249 335 232 319 2.36e-12 68.9
Msa0441870 MtrunA17_Chr7g0216891 45.263 95 47 2 466 559 194 284 5.90e-20 94.4
Msa0441870 MtrunA17_Chr7g0216891 47.826 69 33 3 271 336 209 277 2.10e-11 67.0
Msa0441870 MtrunA17_Chr5g0447711 45.161 93 48 1 472 561 204 296 7.64e-20 90.9
Msa0441870 MtrunA17_Chr5g0447711 50.847 59 29 0 280 338 83 141 4.45e-14 73.9
Msa0441870 MtrunA17_Chr4g0025051 52.632 76 35 1 482 556 322 397 2.15e-19 92.4
Msa0441870 MtrunA17_Chr7g0238921 63.158 57 21 0 495 551 124 180 3.65e-19 89.4
Msa0441870 MtrunA17_Chr7g0238921 51.429 70 33 1 271 339 115 184 5.98e-14 73.6
Msa0441870 MtrunA17_Chr5g0401821 47.368 95 39 2 460 553 174 258 6.06e-19 87.4
Msa0441870 MtrunA17_Chr5g0401821 36.782 87 52 3 251 335 171 256 3.86e-11 64.3
Msa0441870 MtrunA17_Chr2g0333851 42.553 94 38 2 478 555 137 230 2.46e-18 86.7
Msa0441870 MtrunA17_Chr2g0333851 49.180 61 29 2 280 338 169 229 5.12e-12 67.8
Msa0441870 MtrunA17_Chr4g0071521 48.387 93 37 3 460 551 220 302 3.27e-18 86.3
Msa0441870 MtrunA17_Chr4g0071521 36.782 87 52 3 251 335 217 302 2.15e-12 68.9
Msa0441870 MtrunA17_Chr3g0136961 52.055 73 32 2 482 551 123 195 3.49e-18 85.9
Msa0441870 MtrunA17_Chr3g0136961 50.000 62 29 2 276 335 134 195 2.60e-12 68.2
Msa0441870 MtrunA17_Chr2g0284321 53.030 66 29 2 277 340 32 97 9.18e-17 79.7
Msa0441870 MtrunA17_Chr2g0284321 46.667 75 38 2 496 568 36 110 5.60e-14 71.6
Msa0441870 MtrunA17_Chr1g0150271 46.575 73 38 1 483 554 89 161 1.10e-16 80.5
Msa0441870 MtrunA17_Chr1g0150271 41.333 75 35 3 266 338 94 161 7.89e-11 63.2
Msa0441870 MtrunA17_Chr4g0001361 53.968 63 28 1 493 554 160 222 1.57e-16 81.3
Msa0441870 MtrunA17_Chr4g0001361 50.000 66 31 2 276 339 158 223 3.54e-14 74.3
Msa0441870 MtrunA17_Chr1g0184691 49.351 77 38 1 476 551 274 350 1.74e-16 81.6
Msa0441870 MtrunA17_Chr1g0184691 52.459 61 27 2 281 339 294 354 4.05e-12 68.6
Msa0441870 MtrunA17_Chr4g0024391 37.838 111 66 2 449 556 181 291 3.16e-16 82.0
Msa0441870 MtrunA17_Chr7g0270051 53.030 66 30 1 496 560 54 119 5.34e-16 78.6
Msa0441870 MtrunA17_Chr7g0270051 53.846 65 27 3 276 338 50 113 1.18e-13 71.6
Msa0441870 MtrunA17_Chr8g0379461 42.466 73 41 1 496 567 77 149 1.36e-15 77.0
Msa0441870 MtrunA17_Chr8g0379461 37.391 115 57 4 269 375 65 172 2.77e-15 76.3
Msa0441870 MtrunA17_Chr1g0150281 44.578 83 40 3 475 551 115 197 1.42e-15 77.8
Msa0441870 MtrunA17_Chr1g0150281 38.318 107 60 4 281 383 141 245 5.69e-12 67.0
Msa0441870 MtrunA17_Chr6g0468181 52.113 71 34 0 296 366 18 88 1.56e-15 73.6
Msa0441870 MtrunA17_Chr2g0289181 48.611 72 35 2 280 349 14 85 2.43e-15 76.3
Msa0441870 MtrunA17_Chr2g0289181 45.946 74 39 1 484 556 3 76 1.37e-14 73.9
Msa0441870 MtrunA17_Chr7g0228941 46.479 71 37 1 482 551 39 109 2.64e-15 73.2
Msa0441870 MtrunA17_Chr7g0228941 47.368 57 28 2 281 335 53 109 1.49e-12 65.1
Msa0441870 MtrunA17_Chr8g0387501 48.780 82 36 5 271 349 121 199 3.26e-15 76.6
Msa0441870 MtrunA17_Chr8g0387501 49.254 67 33 1 494 559 128 194 8.13e-15 75.5
Msa0441870 MtrunA17_Chr3g0139021 40.196 102 55 2 452 552 276 372 3.83e-15 78.2
Msa0441870 MtrunA17_Chr3g0139021 45.902 61 31 2 281 339 315 375 7.12e-11 64.7
Msa0441870 MtrunA17_Chr8g0387981 51.351 74 28 3 264 333 120 189 7.17e-15 77.0
Msa0441870 MtrunA17_Chr1g0202461 42.353 85 47 2 476 559 243 326 8.71e-15 77.0
Msa0441870 MtrunA17_Chr1g0202461 50.685 73 33 3 279 349 260 331 3.01e-13 72.0
Msa0441870 MtrunA17_Chr2g0319961 48.438 64 32 1 496 558 81 144 2.27e-14 73.9
Msa0441870 MtrunA17_Chr2g0319961 49.231 65 31 2 278 340 78 142 6.70e-12 66.6
Msa0441870 MtrunA17_Chr5g0419241 45.588 68 37 0 456 523 38 105 3.39e-14 69.3
Msa0441870 MtrunA17_Chr1g0188961 65.957 47 16 0 515 561 3 49 3.79e-14 67.8
Msa0441870 MtrunA17_Chr8g0348311 50.769 65 31 1 496 559 156 220 4.42e-14 74.3
Msa0441870 MtrunA17_Chr8g0348311 49.315 73 34 3 279 349 154 225 3.04e-11 65.5
Msa0441870 MtrunA17_Chr2g0293481 46.575 73 37 2 488 559 261 332 5.47e-14 75.1
Msa0441870 MtrunA17_Chr2g0293481 42.857 91 46 4 281 366 268 357 2.71e-12 69.7
Msa0441870 MtrunA17_Chr7g0248691 49.231 65 32 1 496 559 155 219 8.56e-14 73.2
Msa0441870 MtrunA17_Chr7g0248691 50.000 62 29 2 279 338 153 214 2.09e-11 65.9
Msa0441870 MtrunA17_Chr3g0126391 53.333 60 24 2 278 333 131 190 3.10e-13 71.6
Msa0441870 MtrunA17_Chr3g0126391 34.513 113 62 3 494 598 132 240 4.77e-12 68.2
Msa0441870 MtrunA17_Chr4g0009881 50.847 59 28 1 280 338 17 74 3.65e-13 66.6
Msa0441870 MtrunA17_Chr1g0188971 41.096 73 41 1 445 515 10 82 2.84e-12 62.8
Msa0441870 MtrunA17_Chr8g0347251 51.724 58 24 2 280 333 136 193 2.95e-12 68.6
Msa0441870 MtrunA17_Chr7g0275531 44.286 70 33 3 280 343 118 187 8.32e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0441870 AT5G56270.1 50.339 737 274 28 1 697 1 685 0.0 537
Msa0441870 AT4G26440.1 42.918 706 252 22 1 696 1 565 2.81e-146 438
Msa0441870 AT4G26640.7 43.736 455 187 11 113 560 14 406 5.11e-96 306
Msa0441870 AT4G26640.2 43.736 455 187 11 113 560 54 446 1.47e-95 306
Msa0441870 AT4G26640.1 42.725 433 179 11 135 560 4 374 5.47e-84 274
Msa0441870 AT4G26640.5 52.414 290 88 6 275 560 27 270 1.53e-83 269
Msa0441870 AT4G26640.6 52.414 290 88 6 275 560 27 270 1.53e-83 269
Msa0441870 AT4G26640.4 52.414 290 88 6 275 560 27 270 1.53e-83 269
Msa0441870 AT4G26640.3 52.414 290 88 6 275 560 27 270 1.53e-83 269
Msa0441870 AT2G03340.1 46.713 289 94 5 278 561 248 481 3.16e-75 251
Msa0441870 AT2G03340.1 51.316 76 36 1 495 570 250 324 1.81e-16 83.6
Msa0441870 AT1G13960.2 47.857 280 105 6 278 554 74 315 5.49e-72 238
Msa0441870 AT1G13960.1 47.857 280 105 6 278 554 227 468 7.60e-72 243
Msa0441870 AT2G37260.3 47.038 287 103 10 274 551 79 325 3.80e-59 203
Msa0441870 AT2G37260.3 52.055 73 30 2 496 564 86 157 2.42e-14 75.5
Msa0441870 AT2G37260.2 47.038 287 103 10 274 551 77 323 4.33e-59 203
Msa0441870 AT2G37260.2 52.055 73 30 2 496 564 84 155 2.48e-14 75.5
Msa0441870 AT2G37260.1 47.931 290 96 12 274 551 159 405 9.97e-59 205
Msa0441870 AT2G37260.1 52.055 73 30 2 496 564 166 237 3.21e-14 75.9
Msa0441870 AT5G07100.2 68.519 108 25 1 450 557 105 203 1.61e-42 154
Msa0441870 AT5G07100.2 64.000 75 26 1 279 352 23 97 1.58e-24 102
Msa0441870 AT5G07100.2 45.882 85 44 1 495 577 24 108 3.47e-15 75.5
Msa0441870 AT5G07100.2 54.688 64 28 1 280 342 141 204 4.06e-14 72.4
Msa0441870 AT5G07100.4 68.519 108 25 1 450 557 105 203 1.61e-42 154
Msa0441870 AT5G07100.4 64.000 75 26 1 279 352 23 97 1.58e-24 102
Msa0441870 AT5G07100.4 45.882 85 44 1 495 577 24 108 3.47e-15 75.5
Msa0441870 AT5G07100.4 54.688 64 28 1 280 342 141 204 4.06e-14 72.4
Msa0441870 AT5G07100.5 68.519 108 25 1 450 557 105 203 1.61e-42 154
Msa0441870 AT5G07100.5 64.000 75 26 1 279 352 23 97 1.58e-24 102
Msa0441870 AT5G07100.5 45.882 85 44 1 495 577 24 108 3.47e-15 75.5
Msa0441870 AT5G07100.5 54.688 64 28 1 280 342 141 204 4.06e-14 72.4
Msa0441870 AT5G07100.3 68.519 108 25 1 450 557 105 203 1.61e-42 154
Msa0441870 AT5G07100.3 64.000 75 26 1 279 352 23 97 1.58e-24 102
Msa0441870 AT5G07100.3 45.882 85 44 1 495 577 24 108 3.47e-15 75.5
Msa0441870 AT5G07100.3 54.688 64 28 1 280 342 141 204 4.06e-14 72.4
Msa0441870 AT5G07100.1 68.519 108 25 1 450 557 198 296 4.17e-42 155
Msa0441870 AT5G07100.1 64.000 75 26 1 279 352 116 190 4.32e-24 103
Msa0441870 AT5G07100.1 34.899 149 78 3 442 577 59 201 4.31e-16 80.1
Msa0441870 AT5G07100.1 54.688 64 28 1 280 342 234 297 5.04e-14 73.9
Msa0441870 AT4G30935.1 36.678 289 127 9 271 557 159 393 4.98e-42 159
Msa0441870 AT4G30935.1 52.000 75 31 2 272 345 327 397 6.70e-17 84.7
Msa0441870 AT4G12020.3 39.662 237 97 7 281 515 469 661 8.36e-40 158
Msa0441870 AT4G12020.3 41.304 92 43 2 494 575 467 557 3.49e-12 70.9
Msa0441870 AT4G12020.6 39.662 237 97 7 281 515 469 661 8.52e-40 158
Msa0441870 AT4G12020.6 41.304 92 43 2 494 575 467 557 3.42e-12 70.9
Msa0441870 AT4G12020.8 39.662 237 97 7 281 515 469 661 8.52e-40 158
Msa0441870 AT4G12020.8 41.304 92 43 2 494 575 467 557 3.42e-12 70.9
Msa0441870 AT4G12020.1 39.662 237 97 7 281 515 469 661 8.74e-40 158
Msa0441870 AT4G12020.1 41.304 92 43 2 494 575 467 557 3.68e-12 70.9
Msa0441870 AT4G12020.9 39.662 237 97 7 281 515 469 661 8.74e-40 158
Msa0441870 AT4G12020.9 41.304 92 43 2 494 575 467 557 3.68e-12 70.9
Msa0441870 AT4G12020.10 39.662 237 97 7 281 515 469 661 9.21e-40 158
Msa0441870 AT4G12020.10 41.304 92 43 2 494 575 467 557 3.49e-12 70.9
Msa0441870 AT4G12020.4 39.662 237 97 7 281 515 469 661 1.10e-39 158
Msa0441870 AT4G12020.4 41.304 92 43 2 494 575 467 557 3.59e-12 70.9
Msa0441870 AT4G12020.2 39.662 237 97 7 281 515 469 661 1.11e-39 158
Msa0441870 AT4G12020.2 41.304 92 43 2 494 575 467 557 3.74e-12 70.9
Msa0441870 AT4G12020.7 39.662 237 97 7 281 515 469 661 1.13e-39 158
Msa0441870 AT4G12020.7 41.304 92 43 2 494 575 467 557 3.93e-12 70.5
Msa0441870 AT4G12020.5 39.662 237 97 7 281 515 402 594 1.39e-39 158
Msa0441870 AT4G12020.5 41.304 92 43 2 494 575 400 490 3.91e-12 70.5
Msa0441870 AT4G12020.11 39.662 237 97 7 281 515 469 661 1.72e-39 157
Msa0441870 AT4G12020.11 41.304 92 43 2 494 575 467 557 5.46e-12 70.1
Msa0441870 AT3G01080.1 71.579 95 24 1 460 554 274 365 8.72e-39 149
Msa0441870 AT3G01080.1 72.857 70 18 1 278 347 165 233 3.59e-27 115
Msa0441870 AT3G01080.1 55.556 63 27 1 495 557 167 228 2.30e-14 76.3
Msa0441870 AT3G01080.1 58.333 60 24 1 280 338 306 365 3.62e-14 75.9
Msa0441870 AT3G01080.2 71.579 95 24 1 460 554 312 403 9.77e-39 150
Msa0441870 AT3G01080.2 72.857 70 18 1 278 347 203 271 3.78e-27 115
Msa0441870 AT3G01080.2 55.556 63 27 1 495 557 205 266 1.90e-14 77.0
Msa0441870 AT3G01080.2 58.333 60 24 1 280 338 344 403 2.61e-14 76.3
Msa0441870 AT2G30250.1 66.265 83 28 0 474 556 307 389 2.18e-34 135
Msa0441870 AT2G30250.1 67.692 65 21 0 279 343 165 229 5.58e-22 99.4
Msa0441870 AT2G30250.1 56.923 65 27 1 281 344 329 393 5.42e-14 75.1
Msa0441870 AT2G30250.1 47.561 82 37 2 473 554 149 224 1.71e-12 70.5
Msa0441870 AT2G04880.2 57.692 104 44 0 460 563 248 351 3.41e-33 134
Msa0441870 AT2G04880.2 64.407 59 21 0 280 338 111 169 2.54e-20 95.1
Msa0441870 AT2G04880.2 51.220 82 35 2 281 361 284 361 2.93e-17 85.5
Msa0441870 AT2G04880.2 36.036 111 64 3 493 598 109 217 3.38e-14 76.3
Msa0441870 AT2G04880.1 57.692 104 44 0 460 563 272 375 5.73e-33 133
Msa0441870 AT2G04880.1 64.407 59 21 0 280 338 111 169 2.87e-20 95.1
Msa0441870 AT2G04880.1 51.220 82 35 2 281 361 308 385 3.20e-17 85.5
Msa0441870 AT2G04880.1 50.000 64 31 1 493 556 109 171 5.32e-13 72.4
Msa0441870 AT2G44745.1 62.353 85 31 1 476 560 126 209 6.69e-31 121
Msa0441870 AT2G44745.1 61.404 57 21 1 280 335 145 201 9.45e-17 80.1
Msa0441870 AT1G55600.1 61.628 86 33 0 471 556 283 368 1.89e-29 123
Msa0441870 AT1G55600.1 58.333 60 24 1 281 339 308 367 2.33e-15 79.7
Msa0441870 AT4G18170.1 50.435 115 46 1 452 555 118 232 1.21e-28 117
Msa0441870 AT4G18170.1 63.333 60 21 1 280 338 172 231 6.03e-17 82.8
Msa0441870 AT4G39410.1 48.462 130 50 3 444 568 184 301 1.79e-28 116
Msa0441870 AT4G39410.1 52.632 57 26 1 280 335 223 279 8.55e-13 70.1
Msa0441870 AT1G69310.4 62.195 82 31 0 470 551 122 203 2.12e-28 115
Msa0441870 AT1G69310.4 61.404 57 21 1 280 335 147 203 5.99e-16 79.3
Msa0441870 AT1G69310.2 62.195 82 31 0 470 551 122 203 2.12e-28 115
Msa0441870 AT1G69310.2 61.404 57 21 1 280 335 147 203 5.99e-16 79.3
Msa0441870 AT1G69310.1 62.195 82 31 0 470 551 122 203 2.12e-28 115
Msa0441870 AT1G69310.1 61.404 57 21 1 280 335 147 203 5.99e-16 79.3
Msa0441870 AT3G01080.3 72.857 70 18 1 278 347 203 271 2.96e-28 116
Msa0441870 AT3G01080.3 55.556 63 27 1 495 557 205 266 4.73e-15 77.4
Msa0441870 AT1G29860.1 62.821 78 29 0 479 556 120 197 2.86e-27 112
Msa0441870 AT1G29860.1 60.938 64 24 1 280 342 136 199 2.79e-17 83.2
Msa0441870 AT2G47260.1 53.535 99 44 1 479 577 158 254 2.43e-26 111
Msa0441870 AT2G47260.1 57.812 64 26 1 280 342 174 237 7.86e-16 80.1
Msa0441870 AT5G13080.1 50.000 100 50 0 454 553 26 125 3.12e-26 105
Msa0441870 AT5G13080.1 51.724 58 27 1 280 336 67 124 1.15e-14 72.0
Msa0441870 AT5G46350.1 58.750 80 33 0 481 560 169 248 8.21e-26 109
Msa0441870 AT5G46350.1 57.143 70 28 2 280 348 183 251 4.57e-17 83.6
Msa0441870 AT3G01970.1 65.278 72 25 0 482 553 52 123 1.65e-25 103
Msa0441870 AT3G01970.1 53.125 64 27 2 280 341 65 127 5.62e-14 70.1
Msa0441870 AT5G49520.1 61.842 76 29 0 479 554 205 280 2.23e-25 109
Msa0441870 AT5G49520.1 60.000 60 23 1 280 338 221 280 9.40e-16 80.5
Msa0441870 AT5G26170.1 61.429 70 27 0 482 551 100 169 7.11e-25 102
Msa0441870 AT5G26170.1 52.632 57 26 1 280 335 113 169 1.32e-14 72.8
Msa0441870 AT4G04450.2 54.545 88 39 1 470 556 173 260 1.48e-24 107
Msa0441870 AT4G04450.2 44.565 92 49 2 250 339 168 259 1.86e-15 79.7
Msa0441870 AT5G41570.1 57.895 76 32 0 476 551 79 154 1.80e-24 101
Msa0441870 AT5G41570.1 31.373 153 101 3 186 336 5 155 3.75e-15 74.7
Msa0441870 AT5G64810.1 57.746 71 30 0 482 552 97 167 2.09e-24 101
Msa0441870 AT5G64810.1 49.123 57 28 1 280 335 110 166 4.92e-11 63.2
Msa0441870 AT4G04450.1 54.545 88 39 1 470 556 267 354 6.29e-24 106
Msa0441870 AT4G04450.1 44.565 92 49 2 250 339 262 353 4.37e-15 79.3
Msa0441870 AT2G46130.1 55.000 80 36 0 472 551 7 86 6.33e-24 97.4
Msa0441870 AT2G46130.1 63.793 58 20 1 280 336 30 87 1.38e-18 82.0
Msa0441870 AT1G64000.1 56.579 76 33 0 476 551 95 170 9.63e-24 99.8
Msa0441870 AT1G64000.1 53.448 58 26 1 280 336 114 171 1.64e-15 76.3
Msa0441870 AT1G69310.3 58.537 82 30 1 470 551 122 199 1.10e-23 102
Msa0441870 AT1G69310.3 56.140 57 20 2 280 335 147 199 2.06e-11 65.9
Msa0441870 AT4G22070.4 53.488 86 39 1 470 554 272 357 2.75e-23 104
Msa0441870 AT4G22070.4 54.098 61 26 2 281 339 298 358 3.50e-14 76.3
Msa0441870 AT4G22070.3 53.488 86 39 1 470 554 272 357 2.75e-23 104
Msa0441870 AT4G22070.3 54.098 61 26 2 281 339 298 358 3.50e-14 76.3
Msa0441870 AT4G22070.2 53.488 86 39 1 470 554 272 357 2.75e-23 104
Msa0441870 AT4G22070.2 54.098 61 26 2 281 339 298 358 3.50e-14 76.3
Msa0441870 AT4G22070.1 53.488 86 39 1 470 554 272 357 2.75e-23 104
Msa0441870 AT4G22070.1 54.098 61 26 2 281 339 298 358 3.50e-14 76.3
Msa0441870 AT3G62340.1 50.943 106 48 1 471 572 94 199 7.11e-23 99.8
Msa0441870 AT3G62340.1 56.667 60 25 1 280 338 118 177 6.67e-15 76.3
Msa0441870 AT1G62300.1 54.878 82 36 1 474 554 291 372 1.42e-22 102
Msa0441870 AT1G62300.1 54.098 61 26 2 281 339 313 373 2.70e-14 76.6
Msa0441870 AT1G68150.1 50.000 90 44 1 479 567 219 308 2.73e-22 99.8
Msa0441870 AT1G68150.1 53.333 60 26 2 281 338 236 295 1.33e-12 70.5
Msa0441870 AT5G15130.2 48.193 83 42 1 478 559 168 250 4.29e-22 100
Msa0441870 AT5G15130.1 46.067 89 47 1 472 559 204 292 5.19e-22 100
Msa0441870 AT1G18860.1 52.564 78 36 1 478 554 222 299 1.26e-21 99.8
Msa0441870 AT1G18860.1 53.333 60 26 2 281 338 240 299 2.92e-12 70.1
Msa0441870 AT4G01720.1 54.545 77 34 1 479 554 223 299 1.13e-20 96.3
Msa0441870 AT4G01720.1 43.299 97 51 3 247 339 204 300 8.56e-14 75.1
Msa0441870 AT2G21900.1 41.509 106 47 3 455 556 76 170 6.00e-20 89.0
Msa0441870 AT2G21900.1 50.000 60 29 1 280 338 109 168 4.62e-13 69.3
Msa0441870 AT2G23320.1 47.368 95 39 3 460 553 215 299 1.27e-19 90.9
Msa0441870 AT2G23320.1 37.931 87 51 3 251 335 212 297 1.04e-11 67.0
Msa0441870 AT4G24240.1 49.474 95 37 3 460 553 256 340 1.81e-19 91.3
Msa0441870 AT4G24240.1 35.849 106 62 4 232 335 237 338 1.84e-12 69.7
Msa0441870 AT2G46130.2 51.250 80 35 1 472 551 7 82 2.34e-19 84.3
Msa0441870 AT2G46130.2 58.621 58 19 2 280 336 30 83 4.27e-14 69.3
Msa0441870 AT5G28650.1 39.231 130 68 3 433 561 210 329 2.96e-19 90.1
Msa0441870 AT5G28650.1 52.632 57 25 2 281 335 263 319 3.42e-11 65.9
Msa0441870 AT3G04670.1 44.660 103 46 3 460 561 237 329 1.51e-18 87.8
Msa0441870 AT3G04670.1 50.847 59 27 2 281 337 263 321 5.23e-11 65.1
Msa0441870 AT4G31550.1 47.059 102 50 2 466 563 217 318 1.64e-18 87.8
Msa0441870 AT4G31550.1 39.080 87 50 3 251 335 218 303 6.67e-12 67.8
Msa0441870 AT2G24570.1 43.636 110 59 2 466 574 214 321 2.94e-18 87.0
Msa0441870 AT2G24570.1 39.080 87 50 3 251 335 215 300 8.24e-12 67.4
Msa0441870 AT4G31550.2 51.087 92 41 2 476 563 226 317 3.15e-18 87.0
Msa0441870 AT4G31550.2 43.421 76 40 3 262 335 228 302 2.17e-11 66.2
Msa0441870 AT1G80840.1 51.562 64 30 1 493 555 144 207 4.18e-18 86.3
Msa0441870 AT1G80840.1 50.820 61 28 2 280 338 146 206 2.11e-12 68.9
Msa0441870 AT2G30590.1 34.965 143 79 4 410 551 241 370 4.86e-18 87.0
Msa0441870 AT2G30590.1 40.659 91 51 3 251 339 285 374 8.00e-14 74.3
Msa0441870 AT5G43290.1 59.322 59 24 0 493 551 112 170 5.47e-18 85.1
Msa0441870 AT5G43290.1 58.621 58 23 1 279 335 113 170 8.06e-13 69.7
Msa0441870 AT4G23550.1 46.753 77 40 1 484 559 129 205 8.85e-18 85.5
Msa0441870 AT4G23550.1 49.296 71 33 3 281 349 141 210 3.51e-11 65.5
Msa0441870 AT1G69810.2 43.158 95 50 3 478 570 128 220 3.34e-17 84.0
Msa0441870 AT1G69810.2 43.056 72 38 2 281 349 146 217 1.05e-11 67.4
Msa0441870 AT1G69810.1 43.158 95 50 3 478 570 186 278 5.72e-17 84.0
Msa0441870 AT1G69810.1 43.056 72 38 2 281 349 204 275 9.74e-12 67.8
Msa0441870 AT2G25000.2 45.205 73 39 1 494 565 102 174 7.10e-17 80.9
Msa0441870 AT2G25000.2 49.180 61 29 2 280 338 103 163 3.05e-11 64.3
Msa0441870 AT2G25000.4 45.205 73 39 1 494 565 102 174 7.10e-17 80.9
Msa0441870 AT2G25000.4 49.180 61 29 2 280 338 103 163 3.05e-11 64.3
Msa0441870 AT2G25000.3 45.205 73 39 1 494 565 124 196 1.13e-16 80.9
Msa0441870 AT2G25000.3 49.180 61 29 2 280 338 125 185 4.51e-11 64.3
Msa0441870 AT2G25000.1 45.205 73 39 1 494 565 145 217 1.93e-16 80.5
Msa0441870 AT2G25000.1 49.180 61 29 2 280 338 146 206 6.90e-11 63.9
Msa0441870 AT4G31800.2 50.000 64 31 1 494 556 110 173 4.00e-16 79.0
Msa0441870 AT4G31800.2 47.541 61 30 2 280 338 111 171 6.33e-12 66.6
Msa0441870 AT4G31800.1 50.000 64 31 1 494 556 175 238 7.74e-16 79.3
Msa0441870 AT4G31800.1 47.541 61 30 2 280 338 176 236 9.28e-12 67.4
Msa0441870 AT4G01250.1 41.748 103 44 2 458 559 106 193 1.27e-15 78.6
Msa0441870 AT4G01250.1 47.887 71 34 3 281 349 129 198 1.40e-11 66.6
Msa0441870 AT2G40740.1 40.594 101 55 3 256 351 149 249 1.57e-15 78.2
Msa0441870 AT2G40740.3 40.594 101 55 3 256 351 158 258 1.84e-15 78.2
Msa0441870 AT5G52830.1 43.529 85 46 2 476 559 147 230 5.14e-15 77.4
Msa0441870 AT5G52830.1 50.685 73 33 3 279 349 164 235 4.33e-13 71.6
Msa0441870 AT1G29280.1 51.562 64 29 2 277 338 71 134 1.96e-14 74.3
Msa0441870 AT1G29280.1 47.692 65 33 1 496 559 75 139 4.03e-14 73.6
Msa0441870 AT2G34830.1 38.000 100 56 2 461 559 186 280 5.98e-14 75.1
Msa0441870 AT2G34830.1 51.667 60 27 2 281 338 216 275 6.42e-12 68.6
Msa0441870 AT1G30650.1 38.000 100 56 2 461 559 188 282 6.12e-14 75.1
Msa0441870 AT1G30650.1 50.000 60 28 2 281 338 218 277 1.90e-11 67.4
Msa0441870 AT2G34830.2 38.000 100 56 2 461 559 195 289 6.53e-14 75.1
Msa0441870 AT2G34830.2 51.667 60 27 2 281 338 225 284 6.65e-12 68.6
Msa0441870 AT2G38470.1 58.065 62 21 2 495 554 184 242 1.42e-13 74.3
Msa0441870 AT3G58710.1 48.387 62 31 1 496 556 72 133 2.55e-13 71.2
Msa0441870 AT3G58710.1 52.381 63 28 2 278 338 69 131 9.81e-13 69.7
Msa0441870 AT3G58710.2 47.826 69 33 2 496 561 71 139 2.66e-13 71.2
Msa0441870 AT3G58710.2 52.381 63 28 2 278 338 68 130 9.69e-13 69.7
Msa0441870 AT5G45050.4 47.692 65 33 1 496 559 1042 1106 1.58e-12 71.6
Msa0441870 AT5G45050.4 50.769 65 30 2 276 338 1037 1101 4.42e-12 70.5
Msa0441870 AT5G45050.1 47.692 65 33 1 496 559 1181 1245 1.87e-12 71.6
Msa0441870 AT5G45050.1 50.769 65 30 2 276 338 1176 1240 4.75e-12 70.1
Msa0441870 AT5G45050.2 47.692 65 33 1 496 559 1153 1217 1.93e-12 71.6
Msa0441870 AT5G45050.2 50.769 65 30 2 276 338 1148 1212 4.81e-12 70.1
Msa0441870 AT4G23810.1 45.902 61 29 2 278 334 156 216 2.82e-12 68.9
Msa0441870 AT5G24110.1 39.175 97 48 5 272 363 106 196 6.12e-12 67.8
Msa0441870 AT4G11070.2 43.056 72 35 3 278 343 107 178 3.73e-11 65.1
Msa0441870 AT4G11070.1 43.056 72 35 3 278 343 139 210 4.44e-11 65.1
Msa0441870 AT5G45260.1 32.710 107 63 4 250 349 1175 1279 5.75e-11 66.6
Msa0441870 AT2G46400.1 27.429 175 103 5 448 616 65 221 7.60e-11 64.3

Find 218 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTATTCTTCACATGTTAA+AGG 0.167499 3_3:-10398124 Msa0441870:three_prime_UTR
TCTCTTACATATTCTTTAAA+AGG 0.187225 3_3:-10398243 Msa0441870:three_prime_UTR
TTTACAATTCTTCACTTCTT+AGG 0.213546 3_3:-10402451 Msa0441870:intron
GGCGACTTGGAGGAGGTTTC+GGG 0.221606 3_3:+10399577 None:intergenic
TTCAAGCCTACAACAGATTC+AGG 0.225658 3_3:-10400722 Msa0441870:CDS
CGGCGACTTGGAGGAGGTTT+CGG 0.234020 3_3:+10399576 None:intergenic
GAGAGACCCAGATACAATTT+TGG 0.236916 3_3:-10402571 Msa0441870:five_prime_UTR
GCAGTGGCGGTGACCTAGGC+TGG 0.244486 3_3:-10399479 Msa0441870:CDS
TATAGATTATCTCCGTTATA+TGG 0.256932 3_3:+10399616 None:intergenic
CTTGGTTCGTTCAACCTTCC+CGG 0.258909 3_3:-10398569 Msa0441870:CDS
ACCCGACCCAAAATTGTATC+TGG 0.267656 3_3:+10402564 None:intergenic
AACAATTTGCAAACTCAAAA+TGG 0.274108 3_3:-10399357 Msa0441870:CDS
CGCTACCCTTAACTTGCTTT+TGG 0.278034 3_3:+10399715 None:intergenic
ATATAGCTGGAGCTGGTAAT+TGG 0.284730 3_3:-10399437 Msa0441870:CDS
GGTTATCGGTGGCGGAAATA+TGG 0.285913 3_3:-10398997 Msa0441870:CDS
CTTTCTCAGCAATCCCTTCA+TGG 0.309397 3_3:-10399972 Msa0441870:CDS
TCCTCGCAAGCAAAGCTTCC+TGG 0.313451 3_3:-10398464 Msa0441870:CDS
GGATATAATTGGAGAAAATA+TGG 0.316349 3_3:-10399738 Msa0441870:CDS
AAAAGACAATTCTACACATT+TGG 0.325774 3_3:-10399844 Msa0441870:CDS
TATAACGGAGATAATCTATA+AGG 0.331910 3_3:-10399613 Msa0441870:CDS
CATCGGAGGATGGATATAAT+TGG 0.333091 3_3:-10399749 Msa0441870:CDS
GATGAAAATCTTGCACTAAA+TGG 0.339970 3_3:-10401831 Msa0441870:CDS
ATGTAGTGATCACAGATTTA+AGG 0.340679 3_3:+10398750 None:intergenic
GTTGGATTGGTTACCGTATC+CGG 0.341255 3_3:+10399377 None:intergenic
CCCTGTGGTTCACCATGTTC+AGG 0.344262 3_3:+10399504 None:intergenic
AATGGAAACTTTCCTGTTGT+TGG 0.346418 3_3:+10400845 None:intergenic
TCGAGAACTCGACTTGTTCT+CGG 0.350344 3_3:+10401644 None:intergenic
TCCACATTTGGTTCTCCCTT+TGG 0.354303 3_3:+10398371 None:intergenic
TCTTGCACTAAATGGTGATT+GGG 0.360621 3_3:-10401823 Msa0441870:CDS
AACTTATTCTCTCAGGAAAC+TGG 0.362818 3_3:-10399112 Msa0441870:intron
CACTCATGGTAGTGTATCAT+TGG 0.368402 3_3:-10399256 Msa0441870:CDS
GGTACTACTCACATTGATTC+AGG 0.374030 3_3:-10399336 Msa0441870:CDS
CATGAATCCCATTTCATTTG+CGG 0.377014 3_3:+10398397 None:intergenic
CGTGTTCCTTGCAAATTCAT+TGG 0.378555 3_3:-10401460 Msa0441870:intron
AACTTTCCTGTTGTTGGAGA+TGG 0.388150 3_3:+10400851 None:intergenic
ATGTTAAGGCCGCCGCGTTC+AGG 0.388731 3_3:+10398341 None:intergenic
GCAACGCGCCGCAAATGAAA+TGG 0.390178 3_3:-10398405 Msa0441870:CDS
GGCGGCCTTAACATGCAAAA+TGG 0.396093 3_3:-10398332 Msa0441870:CDS
GAACCTTGCAATGTCGGGAT+TGG 0.397116 3_3:-10398492 Msa0441870:CDS
TGTTGTTGCTGCATCATGAA+TGG 0.397926 3_3:+10398428 None:intergenic
AACCTTGCAATGTCGGGATT+GGG 0.398700 3_3:-10398491 Msa0441870:CDS
GCAGCTCAAGGACAAGCTTC+TGG 0.405122 3_3:-10398656 Msa0441870:CDS
TTGTGAACTTGAGATGGTTC+AGG 0.405320 3_3:+10398608 None:intergenic
ATCTTGCACTAAATGGTGAT+TGG 0.405599 3_3:-10401824 Msa0441870:CDS
GATAGAATTGCTGCTCGAAC+TGG 0.408486 3_3:-10401609 Msa0441870:CDS
TCAGGATTAGCGTCCACATT+TGG 0.408554 3_3:+10398359 None:intergenic
AAGTTTCCATTTGTTTCAAA+TGG 0.409529 3_3:-10400833 Msa0441870:CDS
TACTACAAGTGCACCAATGC+AGG 0.412359 3_3:-10398812 Msa0441870:CDS
ATGCCTGACCGGCGACTTGG+AGG 0.413497 3_3:+10399567 None:intergenic
CCAAGTCGCCGGTCAGGCAT+AGG 0.416054 3_3:-10399564 Msa0441870:CDS
TTGGATTGGTTACCGTATCC+GGG 0.416255 3_3:+10399378 None:intergenic
CAAAAGTAGCCTCCATCTTA+AGG 0.416713 3_3:-10399892 Msa0441870:CDS
ATAACGGAGATAATCTATAA+GGG 0.422795 3_3:-10399612 Msa0441870:CDS
ACGTCCGAATTCAGAACATT+CGG 0.423285 3_3:-10401733 Msa0441870:CDS
CCTCCTCCAAGTCGCCGGTC+AGG 0.425165 3_3:-10399570 Msa0441870:CDS
ATATGGCCAAAAGCAAGTTA+AGG 0.425865 3_3:-10399721 Msa0441870:CDS
GACTCGTTGGTTGCTGGTGT+TGG 0.426208 3_3:-10399780 Msa0441870:CDS
AACGGAGACTCGTTGGTTGC+TGG 0.427288 3_3:-10399786 Msa0441870:CDS
GGAAGCTTTGCTTGCGAGGA+AGG 0.428637 3_3:+10398467 None:intergenic
AATGGGTTCATAGGCATTCC+AGG 0.429862 3_3:+10398446 None:intergenic
ATGACCTAGCTGCTGTCTCC+CGG 0.431091 3_3:+10398550 None:intergenic
CCTTACAGTGCACCCTGCAT+TGG 0.431542 3_3:+10398799 None:intergenic
GAGGGACAAGATGGTGATTC+CGG 0.435458 3_3:-10401696 Msa0441870:CDS
AAGAATGACTACCTTGGGTT+GGG 0.441222 3_3:+10398952 None:intergenic
CTTCCCGAATGTTCTGAATT+CGG 0.445390 3_3:+10401729 None:intergenic
TGACAGCTGATGTTGCTTCA+AGG 0.445597 3_3:+10399403 None:intergenic
TGGGTCGGGTTCGGGTTCCT+CGG 0.448299 3_3:-10402551 Msa0441870:five_prime_UTR
ATGGTTCAGGTCTATGCATA+TGG 0.448997 3_3:+10398621 None:intergenic
GGTCATCCGCATGGCTTCTT+CGG 0.452741 3_3:-10398533 Msa0441870:CDS
TAAAGTGAGGTTTGAATGGC+TGG 0.453770 3_3:-10401858 Msa0441870:exon
GAGGGCCCTGAATCTGTTGT+AGG 0.453857 3_3:+10400716 None:intergenic
CCTATGCCTGACCGGCGACT+TGG 0.458013 3_3:+10399564 None:intergenic
GTTGTTGCTGCATCATGAAT+GGG 0.462753 3_3:+10398429 None:intergenic
GGAGAATCTAAAAGTGTAGT+AGG 0.463976 3_3:+10401483 None:intergenic
GTGTACTCATTCAAATTGTC+CGG 0.469086 3_3:-10399670 Msa0441870:CDS
ATTATGAATCACATGCCTCT+TGG 0.469433 3_3:-10398287 Msa0441870:CDS
CTGTCGAACCTTGCAATGTC+GGG 0.470366 3_3:-10398497 Msa0441870:CDS
TATGGCCAAAAGCAAGTTAA+GGG 0.471248 3_3:-10399720 Msa0441870:CDS
ATGTTGCCATTTGAAACAAA+TGG 0.473438 3_3:+10400827 None:intergenic
ATATCCTCGATGATGGTTAT+CGG 0.475694 3_3:-10399011 Msa0441870:CDS
TTGATAAAGTGAGGTTTGAA+TGG 0.479422 3_3:-10401862 Msa0441870:exon
TGTTCTATCATTTCTAGTGG+TGG 0.480657 3_3:-10402516 Msa0441870:five_prime_UTR
CGGAAAACTCTGCCTTAAGA+TGG 0.485915 3_3:+10399880 None:intergenic
CCAATGCAGGGTGCACTGTA+AGG 0.487294 3_3:-10398799 Msa0441870:CDS
CAACGCGCCGCAAATGAAAT+GGG 0.487752 3_3:-10398404 Msa0441870:CDS
CGTCCGAATTCAGAACATTC+GGG 0.488948 3_3:-10401732 Msa0441870:CDS
GATAACTTGTATCGCTCAAG+TGG 0.489377 3_3:+10401670 None:intergenic
GGTGGCAGTGGCGGTGACCT+AGG 0.491981 3_3:-10399483 Msa0441870:CDS
GCACAGCCATCTCCAACAAC+AGG 0.493338 3_3:-10400857 Msa0441870:CDS
TTGGTTCGTTCAACCTTCCC+GGG 0.494017 3_3:-10398568 Msa0441870:CDS
GTACAGAAGGGAAATATAGC+TGG 0.494656 3_3:-10399450 Msa0441870:CDS
GAGTTTGCAAATTGTTGGAT+TGG 0.499841 3_3:+10399364 None:intergenic
TGACTGCTGGAACGAGCAGC+GGG 0.501885 3_3:+10398701 None:intergenic
TCCTGAACATGGTGAACCAC+AGG 0.504125 3_3:-10399505 Msa0441870:CDS
TGCATCATGAATGGGTTCAT+AGG 0.504266 3_3:+10398437 None:intergenic
TTTGTGTATGTATGAATGAA+TGG 0.509999 3_3:+10402645 None:intergenic
AACGGCATGAGGCCTTCGCT+TGG 0.513928 3_3:-10398587 Msa0441870:CDS
AATTCAGAACATTCGGGAAG+TGG 0.514532 3_3:-10401726 Msa0441870:CDS
CAAGTCGCCGGTCAGGCATA+GGG 0.514587 3_3:-10399563 Msa0441870:CDS
TGTTTCAAGATTAACACAAA+AGG 0.514869 3_3:-10402595 Msa0441870:five_prime_UTR
GGTGAACCACAGGGTGGCAG+TGG 0.518041 3_3:-10399495 Msa0441870:CDS
CCTGTCGAACCTTGCAATGT+CGG 0.519344 3_3:-10398498 Msa0441870:CDS
ATCGAGGATATCTACTTCGC+TGG 0.520413 3_3:+10399023 None:intergenic
CAGTGGCGGTGACCTAGGCT+GGG 0.521688 3_3:-10399478 Msa0441870:CDS
ATTCGCATTGACGTGACTGC+TGG 0.522171 3_3:+10398688 None:intergenic
TCCAGGAAGCTTTGCTTGCG+AGG 0.522306 3_3:+10398463 None:intergenic
CCGACATTGCAAGGTTCGAC+AGG 0.522335 3_3:+10398498 None:intergenic
AAATGATAGAACAAAAGAAT+CGG 0.522606 3_3:+10402526 None:intergenic
CCTGACCGGCGACTTGGAGG+AGG 0.523850 3_3:+10399570 None:intergenic
TTCTCATGAGGGCCATATAA+CGG 0.530629 3_3:-10399628 Msa0441870:CDS
GAACTCGACTTGTTCTCGGT+TGG 0.530653 3_3:+10401648 None:intergenic
TCAGCTGTCAACCCCGGATA+CGG 0.534204 3_3:-10399390 Msa0441870:CDS
TGGTGTTGGCGGTACTCCAT+CGG 0.535867 3_3:-10399766 Msa0441870:CDS
TAAGAATGACTACCTTGGGT+TGG 0.541313 3_3:+10398951 None:intergenic
CTAGCTGCTGTCTCCCGGGA+AGG 0.542522 3_3:+10398555 None:intergenic
GGAAGAGCAAGCAGATGAAG+AGG 0.543715 3_3:-10399823 Msa0441870:CDS
AGGCTGGGCTAATGTACAGA+AGG 0.548184 3_3:-10399463 Msa0441870:CDS
CTGAAGCTTCAACACCATGA+AGG 0.548464 3_3:+10399958 None:intergenic
ATGCTCTCTGTATTCAACCT+TGG 0.549716 3_3:+10401576 None:intergenic
GAAGCTTTGCTTGCGAGGAA+GGG 0.549966 3_3:+10398468 None:intergenic
CCAGGCGGTATAGTCAAGTA+AGG 0.550484 3_3:+10401513 None:intergenic
TCCACTTGCATGTCAGCATG+AGG 0.551146 3_3:+10399531 None:intergenic
TGTAATGATCAGACATACAT+AGG 0.551546 3_3:-10398180 Msa0441870:three_prime_UTR
TGTATCGCTCAAGTGGGTAC+CGG 0.551680 3_3:+10401677 None:intergenic
TCTAGTAGCTCCACTCATCT+CGG 0.552091 3_3:+10399080 None:intergenic
GGCCCAATCCCGACATTGCA+AGG 0.552372 3_3:+10398489 None:intergenic
TCAAGCCTACAACAGATTCA+GGG 0.552504 3_3:-10400721 Msa0441870:CDS
ATGGGATTCATGTTACCAAA+GGG 0.552557 3_3:-10398386 Msa0441870:CDS
GAACCACAGGGTGGCAGTGG+CGG 0.552598 3_3:-10399492 Msa0441870:CDS
ACTCATGGTAGTGTATCATT+GGG 0.552943 3_3:-10399255 Msa0441870:CDS
TAGTTGACCCTATGCCTGAC+CGG 0.554027 3_3:+10399556 None:intergenic
TCGTTGGTTGCTGGTGTTGG+CGG 0.559827 3_3:-10399777 Msa0441870:CDS
CCCGACCCAAAATTGTATCT+GGG 0.559927 3_3:+10402565 None:intergenic
GAAGAAGAGGAAGACGATCA+AGG 0.561217 3_3:-10399279 Msa0441870:CDS
TGACCTAGCTGCTGTCTCCC+GGG 0.564057 3_3:+10398551 None:intergenic
AGGGACCTTGGACTTGGACT+AGG 0.564318 3_3:+10401795 None:intergenic
CCCTCATGCTGACATGCAAG+TGG 0.564823 3_3:-10399532 Msa0441870:CDS
GTACACTTGTAGTAACTTCG+AGG 0.567336 3_3:+10399687 None:intergenic
GAGGGAGAACAAAGAGTCAA+CGG 0.570062 3_3:-10399804 Msa0441870:CDS
TCTGTACATTAGCCCAGCCT+AGG 0.570398 3_3:+10399466 None:intergenic
GTAGTCTGAACAACAACTCT+AGG 0.571480 3_3:+10399045 None:intergenic
GAAGTAGATATCCTCGATGA+TGG 0.573669 3_3:-10399018 Msa0441870:CDS
AAGGGAAATATAGCTGGAGC+TGG 0.574752 3_3:-10399444 Msa0441870:CDS
CAATGAATTTGCAAGGAACA+CGG 0.575971 3_3:+10401461 None:intergenic
CGAAACCTCCTCCAAGTCGC+CGG 0.578429 3_3:-10399575 Msa0441870:CDS
GGTAGAACTGAGGGACAAGA+TGG 0.580548 3_3:-10401705 Msa0441870:CDS
GGTGGTTGAACTTCCTTGTG+TGG 0.584188 3_3:-10402498 Msa0441870:five_prime_UTR
TGAAGCTTCAACACCATGAA+GGG 0.585732 3_3:+10399959 None:intergenic
CAATTATATCCATCCTCCGA+TGG 0.586613 3_3:+10399750 None:intergenic
TCGATGATGGTTATCGGTGG+CGG 0.587391 3_3:-10399005 Msa0441870:CDS
ATGAATCAGAGTCTAAAAGA+AGG 0.588175 3_3:-10399215 Msa0441870:intron
GAATCATATGCCGAGATGAG+TGG 0.589323 3_3:-10399090 Msa0441870:CDS
GAAAGTAGAACGTTCTCATG+AGG 0.589600 3_3:-10399640 Msa0441870:CDS
AACTCACCAATGAATTTGCA+AGG 0.592002 3_3:+10401454 None:intergenic
GGCGGTACTCCATCGGAGGA+TGG 0.594165 3_3:-10399759 Msa0441870:CDS
ATGCCGTTGTGAACTTGAGA+TGG 0.595174 3_3:+10398602 None:intergenic
CTCAAGTTCACAACGGCATG+AGG 0.596029 3_3:-10398598 Msa0441870:CDS
GAGAACAAGTCGAGTTCTCG+AGG 0.596736 3_3:-10401642 Msa0441870:CDS
CATTGATTCAGGAGATGCAG+TGG 0.597968 3_3:-10399325 Msa0441870:CDS
AACAACTCTAGGCTCGCGAA+TGG 0.599268 3_3:+10399056 None:intergenic
GACTTGGAGGAGGTTTCGGG+TGG 0.599626 3_3:+10399580 None:intergenic
GAACTGGATTTAATGCTCCA+AGG 0.600329 3_3:-10401593 Msa0441870:CDS
AATGAATTTGCAAGGAACAC+GGG 0.604026 3_3:+10401462 None:intergenic
AAAGTAGAACGTTCTCATGA+GGG 0.604575 3_3:-10399639 Msa0441870:CDS
TCGGGAAGTGGTAGAACTGA+GGG 0.606371 3_3:-10401714 Msa0441870:CDS
GAAGACGATCAAGGCACTCA+TGG 0.606644 3_3:-10399270 Msa0441870:CDS
CCACTTGCATGTCAGCATGA+GGG 0.606802 3_3:+10399532 None:intergenic
GCAACATCAGCTGTCAACCC+CGG 0.607436 3_3:-10399396 Msa0441870:CDS
TACACTTGTAGTAACTTCGA+GGG 0.609634 3_3:+10399688 None:intergenic
GTCTACCTAGTCCAAGTCCA+AGG 0.614182 3_3:-10401800 Msa0441870:CDS
TAACGGAGATAATCTATAAG+GGG 0.614320 3_3:-10399611 Msa0441870:CDS
CCTTACTTGACTATACCGCC+TGG 0.615366 3_3:-10401513 Msa0441870:CDS
AAGAGTCAACGGAGACTCGT+TGG 0.615925 3_3:-10399793 Msa0441870:CDS
TATGGACAGAAAGTTGTCAA+AGG 0.617805 3_3:-10398979 Msa0441870:CDS
AATGCTTCTAACGCAGCTCA+AGG 0.620924 3_3:-10398668 Msa0441870:CDS
GAAGAGCAAGCAGATGAAGA+GGG 0.623139 3_3:-10399822 Msa0441870:CDS
GAACAAAAGAATCGGATCCG+AGG 0.624760 3_3:+10402534 None:intergenic
AAAACTCTGCCTTAAGATGG+AGG 0.626789 3_3:+10399883 None:intergenic
GTGACTGCTGGAACGAGCAG+CGG 0.626891 3_3:+10398700 None:intergenic
CTTGCACTAAATGGTGATTG+GGG 0.627891 3_3:-10401822 Msa0441870:CDS
AAAGTGAGGTTTGAATGGCT+GGG 0.630620 3_3:-10401857 Msa0441870:exon
ACTACAAGTGCACCAATGCA+GGG 0.634462 3_3:-10398811 Msa0441870:CDS
AATGGGATTCATGTTACCAA+AGG 0.635351 3_3:-10398387 Msa0441870:CDS
CTTCCCGGGAGACAGCAGCT+AGG 0.636920 3_3:-10398554 Msa0441870:CDS
CTTGAATGAAAGAAAATCAG+CGG 0.637570 3_3:+10398086 None:intergenic
TCTGTGATCACTACATACGA+GGG 0.638313 3_3:-10398743 Msa0441870:CDS
ATCTGTGATCACTACATACG+AGG 0.641100 3_3:-10398744 Msa0441870:CDS
TGTATCATTGGGTTATGATG+CGG 0.643412 3_3:-10399244 Msa0441870:CDS
TCAAAGGAAATCCCAACCCA+AGG 0.645747 3_3:-10398963 Msa0441870:intron
TGTTGTAGGCTTGAAAGCGA+AGG 0.648946 3_3:+10400730 None:intergenic
TGGATTGGTTACCGTATCCG+GGG 0.651936 3_3:+10399379 None:intergenic
TCAATCTCAAAGAGTTGATG+CGG 0.655003 3_3:-10399934 Msa0441870:CDS
TCCTCGATGATGGTTATCGG+TGG 0.657777 3_3:-10399008 Msa0441870:CDS
CCTGAACATGGTGAACCACA+GGG 0.659823 3_3:-10399504 Msa0441870:CDS
GTGCACTGTAAGGAAGCATG+TGG 0.665453 3_3:-10398789 Msa0441870:CDS
CAAGTGGACAATCCTGAACA+TGG 0.665803 3_3:-10399516 Msa0441870:CDS
ACCAAAGGGAGAACCAAATG+TGG 0.665868 3_3:-10398372 Msa0441870:CDS
AACGGAGATAATCTATAAGG+GGG 0.668962 3_3:-10399610 Msa0441870:CDS
TGTTGGCGGTACTCCATCGG+AGG 0.670376 3_3:-10399763 Msa0441870:CDS
AGGTTGAACGAACCAAGCGA+AGG 0.670429 3_3:+10398575 None:intergenic
TTCGGGAAGTGGTAGAACTG+AGG 0.674120 3_3:-10401715 Msa0441870:CDS
TCACCGCCACTGCCACCCTG+TGG 0.678158 3_3:+10399489 None:intergenic
GGCTGGGCTAATGTACAGAA+GGG 0.678675 3_3:-10399462 Msa0441870:CDS
ATTCATTCATACATACACAA+AGG 0.688501 3_3:-10402643 Msa0441870:five_prime_UTR
ATAACTTGTATCGCTCAAGT+GGG 0.689016 3_3:+10401671 None:intergenic
TCATTGGGTTATGATGCGGA+AGG 0.689115 3_3:-10399240 Msa0441870:CDS
CAGCAGCTAGGTCATCCGCA+TGG 0.689731 3_3:-10398542 Msa0441870:CDS
CTGATGATAATTCTGAGCTG+CGG 0.709325 3_3:+10400804 None:intergenic
AACAAGTCGAGTTCTCGAGG+TGG 0.724082 3_3:-10401639 Msa0441870:CDS
TTCATGCCGAAGAAGCCATG+CGG 0.727689 3_3:+10398527 None:intergenic
AGTGTAGTAGGACTAAGACC+AGG 0.734205 3_3:+10401495 None:intergenic
GACTGCTGGAACGAGCAGCG+GGG 0.738619 3_3:+10398702 None:intergenic
GAACCATCTCAAGTTCACAA+CGG 0.751840 3_3:-10398605 Msa0441870:CDS
GACGCTAATCCTGAACGCGG+CGG 0.752010 3_3:-10398350 Msa0441870:CDS
GCCACCGATAACCATCATCG+AGG 0.756754 3_3:+10399007 None:intergenic
GTGGACGCTAATCCTGAACG+CGG 0.765043 3_3:-10398353 Msa0441870:CDS
GAACATGGTGAACCACAGGG+TGG 0.772249 3_3:-10399501 Msa0441870:CDS
GTAGTAGGACTAAGACCAGG+CGG 0.775032 3_3:+10401498 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAGTTTTTTGAAAATTTTA+AGG - chr3_3:10398670-10398689 Msa0441870:CDS 10.0%
!!! GAACAATGTTTTTTTTTTTT+TGG - chr3_3:10398411-10398430 Msa0441870:CDS 15.0%
!!! TTTTTTGGTTGATAAATTTA+AGG - chr3_3:10398426-10398445 Msa0441870:CDS 15.0%
!!! TAAACAAATCATGTTTTTAT+AGG + chr3_3:10398651-10398670 None:intergenic 15.0%
!!! TTTTTTGAAAATTTTAAGGT+TGG - chr3_3:10398674-10398693 Msa0441870:CDS 15.0%
!!! CAAAATCATTTTTTTTTTGT+TGG - chr3_3:10398757-10398776 Msa0441870:CDS 15.0%
!!! TTTTTTTTTTTGGATGAAAT+TGG - chr3_3:10398796-10398815 Msa0441870:CDS 15.0%
!!! AGATTTATATATTTTTCTTC+TGG - chr3_3:10400716-10400735 Msa0441870:CDS 15.0%
!! AAATGATAGAACAAAAGAAT+CGG + chr3_3:10398229-10398248 None:intergenic 20.0%
!!! TTGTTTGTTTGATGATTTTA+AGG - chr3_3:10398382-10398401 Msa0441870:CDS 20.0%
!!! TTTGTTACATTTTGTGAAAT+GGG - chr3_3:10398466-10398485 Msa0441870:CDS 20.0%
!! CATAAAAATTTGATCTTTGT+AGG - chr3_3:10398857-10398876 Msa0441870:intron 20.0%
!! CAAGAAAAATCTAAACATAA+TGG - chr3_3:10399976-10399995 Msa0441870:CDS 20.0%
!! TTAGAATGAATGATAGTTTA+AGG + chr3_3:10400165-10400184 None:intergenic 20.0%
!!! CTCTAAAGTATATGAAAAAT+TGG - chr3_3:10400251-10400270 Msa0441870:intron 20.0%
!!! TGTAGTTTTTGTTAAAATCA+CGG + chr3_3:10400625-10400644 None:intergenic 20.0%
!!! TTTTAACAAAAACTACACTT+TGG - chr3_3:10400628-10400647 Msa0441870:intron 20.0%
!! ATATAAATCTAGTGCATATT+TGG + chr3_3:10400706-10400725 None:intergenic 20.0%
!!! AGAATAAAATTTTACATGTG+AGG + chr3_3:10402492-10402511 None:intergenic 20.0%
!! TCTCTTACATATTCTTTAAA+AGG - chr3_3:10402509-10402528 Msa0441870:five_prime_UTR 20.0%
! TTTGTGTATGTATGAATGAA+TGG + chr3_3:10398110-10398129 None:intergenic 25.0%
! ATTCATTCATACATACACAA+AGG - chr3_3:10398109-10398128 Msa0441870:three_prime_UTR 25.0%
! TGTTTCAAGATTAACACAAA+AGG - chr3_3:10398157-10398176 Msa0441870:three_prime_UTR 25.0%
!!! TTTTGTTCTATCATTTCTAG+TGG - chr3_3:10398233-10398252 Msa0441870:three_prime_UTR 25.0%
! TTTACAATTCTTCACTTCTT+AGG - chr3_3:10398301-10398320 Msa0441870:CDS 25.0%
!!! TTTGATGATTTTAAGGATTG+TGG - chr3_3:10398389-10398408 Msa0441870:CDS 25.0%
!!! GTTTGTTACATTTTGTGAAA+TGG - chr3_3:10398465-10398484 Msa0441870:CDS 25.0%
!!! TGTTTTTTTTGTTTGGTCTT+AGG - chr3_3:10398492-10398511 Msa0441870:CDS 25.0%
! AATTGGAGTTCTGTAATATT+TGG - chr3_3:10398813-10398832 Msa0441870:CDS 25.0%
! AAATTTGATCTTTGTAGGTT+AGG - chr3_3:10398862-10398881 Msa0441870:intron 25.0%
!!! TAGGTATTTTTGATAAAGTG+AGG - chr3_3:10398881-10398900 Msa0441870:intron 25.0%
!!! CTAATGTTTTATTGCAATCT+TGG - chr3_3:10399488-10399507 Msa0441870:CDS 25.0%
! GTCATAATCTTAGATATTGT+CGG - chr3_3:10399527-10399546 Msa0441870:CDS 25.0%
! TCATAATCTTAGATATTGTC+GGG - chr3_3:10399528-10399547 Msa0441870:CDS 25.0%
!!! TTTTTTTAAAACCCTATGCA+TGG - chr3_3:10399665-10399684 Msa0441870:CDS 25.0%
! TGTAATCTTAATGTTGCAAT+TGG - chr3_3:10399708-10399727 Msa0441870:CDS 25.0%
! TCAATTCTTCAATTTGAACA+AGG - chr3_3:10399742-10399761 Msa0441870:CDS 25.0%
! CAATTCTTCAATTTGAACAA+GGG - chr3_3:10399743-10399762 Msa0441870:CDS 25.0%
! TTATGAATCTGTCTAATTTC+AGG - chr3_3:10399873-10399892 Msa0441870:CDS 25.0%
! AAGTTTCCATTTGTTTCAAA+TGG - chr3_3:10399919-10399938 Msa0441870:CDS 25.0%
!! TTCTTTTACGATTGTAGTTT+TGG - chr3_3:10400108-10400127 Msa0441870:intron 25.0%
! TAGTTTAAGGACTAAATTGA+TGG + chr3_3:10400152-10400171 None:intergenic 25.0%
!! TACTTTAGAGACTAAATTGA+CGG + chr3_3:10400241-10400260 None:intergenic 25.0%
! ATTTACTTCTCAAATCAACA+TGG - chr3_3:10400420-10400439 Msa0441870:intron 25.0%
! ATGTAAACTTGAATTGTGTA+CGG + chr3_3:10400489-10400508 None:intergenic 25.0%
! TTGGAACTTCAATTAAAACA+CGG - chr3_3:10400647-10400666 Msa0441870:intron 25.0%
! AAAAGACAATTCTACACATT+TGG - chr3_3:10400908-10400927 Msa0441870:intron 25.0%
! GGATATAATTGGAGAAAATA+TGG - chr3_3:10401014-10401033 Msa0441870:intron 25.0%
! TATAGATTATCTCCGTTATA+TGG + chr3_3:10401139-10401158 None:intergenic 25.0%
!! TATAACGGAGATAATCTATA+AGG - chr3_3:10401139-10401158 Msa0441870:intron 25.0%
!! ATAACGGAGATAATCTATAA+GGG - chr3_3:10401140-10401159 Msa0441870:intron 25.0%
!!! ATTTTGAGTTTGCAAATTGT+TGG + chr3_3:10401396-10401415 None:intergenic 25.0%
! AACAATTTGCAAACTCAAAA+TGG - chr3_3:10401395-10401414 Msa0441870:intron 25.0%
!! TACATTTTCAAATGAAGAAG+AGG - chr3_3:10401460-10401479 Msa0441870:intron 25.0%
! TACTTCATACTATTCATTGT+TGG - chr3_3:10401560-10401579 Msa0441870:CDS 25.0%
!! GTTGTTCATTTTGAATATCT+TGG + chr3_3:10401623-10401642 None:intergenic 25.0%
! CATTATTCTTCACATGTTAA+AGG - chr3_3:10402628-10402647 Msa0441870:five_prime_UTR 25.0%
TAACAAGAAAAAACCACACA+AGG + chr3_3:10398270-10398289 None:intergenic 30.0%
!!! TTTTTTGGTTCATTGCAACA+AGG + chr3_3:10398564-10398583 None:intergenic 30.0%
TTGATAAAGTGAGGTTTGAA+TGG - chr3_3:10398890-10398909 Msa0441870:intron 30.0%
GATGAAAATCTTGCACTAAA+TGG - chr3_3:10398921-10398940 Msa0441870:intron 30.0%
TTCTAGCAGTCTAGAAAAAA+GGG + chr3_3:10398979-10398998 None:intergenic 30.0%
TAATGTATTGTGCTTCATCT+AGG + chr3_3:10399421-10399440 None:intergenic 30.0%
! TGATGATGCATACATTTCAT+AGG - chr3_3:10399445-10399464 Msa0441870:CDS 30.0%
! TTTTATTGCAATCTTGGTGA+CGG - chr3_3:10399494-10399513 Msa0441870:CDS 30.0%
!!! CATCATGGTTTTAGATGTTT+CGG + chr3_3:10399613-10399632 None:intergenic 30.0%
TAAATATACAGCCATGCATA+GGG + chr3_3:10399679-10399698 None:intergenic 30.0%
TTAAATATACAGCCATGCAT+AGG + chr3_3:10399680-10399699 None:intergenic 30.0%
! ATGTTGCCATTTGAAACAAA+TGG + chr3_3:10399928-10399947 None:intergenic 30.0%
!! TGACGGATTTCATATACTTT+AGG + chr3_3:10400224-10400243 None:intergenic 30.0%
TTAGTCCTTCACATCTTAAT+AGG - chr3_3:10400279-10400298 Msa0441870:intron 30.0%
TAGTCCTTCACATCTTAATA+GGG - chr3_3:10400280-10400299 Msa0441870:intron 30.0%
!!! TGACGGGTTTTATATACTTT+AGG - chr3_3:10400313-10400332 Msa0441870:intron 30.0%
ATGTAGTGACTGAATTAAAG+AGG - chr3_3:10400353-10400372 Msa0441870:intron 30.0%
TGTAGTGACTGAATTAAAGA+GGG - chr3_3:10400354-10400373 Msa0441870:intron 30.0%
!! TTTAATTGATAGCCTTGTCT+AGG - chr3_3:10400540-10400559 Msa0441870:intron 30.0%
! AGTTTTTGTTAAAATCACGG+TGG + chr3_3:10400622-10400641 None:intergenic 30.0%
TGTATTCATCTGCAAATTGA+AGG + chr3_3:10400754-10400773 None:intergenic 30.0%
! TGTGTAGAATTGTCTTTTTG+AGG + chr3_3:10400906-10400925 None:intergenic 30.0%
! CGTTCTACTTTCTTTTTAAC+CGG + chr3_3:10401104-10401123 None:intergenic 30.0%
TAACGGAGATAATCTATAAG+GGG - chr3_3:10401141-10401160 Msa0441870:intron 30.0%
ATGAATCAGAGTCTAAAAGA+AGG - chr3_3:10401537-10401556 Msa0441870:CDS 30.0%
AATGAACAACTTATTCTCTC+AGG - chr3_3:10401633-10401652 Msa0441870:CDS 30.0%
!!! CAGCTATATTTTGACACAAT+GGG + chr3_3:10401893-10401912 None:intergenic 30.0%
!!! TCAGCTATATTTTGACACAA+TGG + chr3_3:10401894-10401913 None:intergenic 30.0%
!! ATAGCTGAATGTTTCTGTTT+TGG - chr3_3:10401906-10401925 Msa0441870:intron 30.0%
!! TAGCTGAATGTTTCTGTTTT+GGG - chr3_3:10401907-10401926 Msa0441870:intron 30.0%
ATGTAGTGATCACAGATTTA+AGG + chr3_3:10402005-10402024 None:intergenic 30.0%
TGTAATGATCAGACATACAT+AGG - chr3_3:10402572-10402591 Msa0441870:five_prime_UTR 30.0%
CTTGAATGAAAGAAAATCAG+CGG + chr3_3:10402669-10402688 None:intergenic 30.0%
! AGAGACCCAGATACAATTTT+GGG - chr3_3:10398182-10398201 Msa0441870:three_prime_UTR 35.0%
!! TGTTCTATCATTTCTAGTGG+TGG - chr3_3:10398236-10398255 Msa0441870:three_prime_UTR 35.0%
!!! TGGGTCGTGTTTTTTTTGTT+TGG - chr3_3:10398485-10398504 Msa0441870:CDS 35.0%
GAAACGCTAAAATGAATCAC+AGG + chr3_3:10398717-10398736 None:intergenic 35.0%
!! TTCATTTTAGCGTTTCGTTG+AGG - chr3_3:10398721-10398740 Msa0441870:CDS 35.0%
ATCTTGCACTAAATGGTGAT+TGG - chr3_3:10398928-10398947 Msa0441870:intron 35.0%
TCTTGCACTAAATGGTGATT+GGG - chr3_3:10398929-10398948 Msa0441870:intron 35.0%
CTTCTAGCAGTCTAGAAAAA+AGG + chr3_3:10398980-10398999 None:intergenic 35.0%
! ATAACTTGTATCGCTCAAGT+GGG + chr3_3:10399084-10399103 None:intergenic 35.0%
! GGAGAATCTAAAAGTGTAGT+AGG + chr3_3:10399272-10399291 None:intergenic 35.0%
AATGAATTTGCAAGGAACAC+GGG + chr3_3:10399293-10399312 None:intergenic 35.0%
CAATGAATTTGCAAGGAACA+CGG + chr3_3:10399294-10399313 None:intergenic 35.0%
AACTCACCAATGAATTTGCA+AGG + chr3_3:10399301-10399320 None:intergenic 35.0%
! TAGAAAGCACATTTGTGTTG+TGG - chr3_3:10399338-10399357 Msa0441870:CDS 35.0%
AATCGACGTGATTCAAATCA+TGG - chr3_3:10399584-10399603 Msa0441870:CDS 35.0%
TGTTGCAATTGGATGATCTA+TGG - chr3_3:10399719-10399738 Msa0441870:CDS 35.0%
AGACAGATTCATAACTCAGT+AGG + chr3_3:10399867-10399886 None:intergenic 35.0%
AATGGAAACTTTCCTGTTGT+TGG + chr3_3:10399910-10399929 None:intergenic 35.0%
!! AATAGGGTGGACTAAATTGA+CGG - chr3_3:10400296-10400315 Msa0441870:intron 35.0%
GTAGTGACTGAATTAAAGAG+GGG - chr3_3:10400355-10400374 Msa0441870:intron 35.0%
TAGTGACTGAATTAAAGAGG+GGG - chr3_3:10400356-10400375 Msa0441870:intron 35.0%
CATATATCATTGCCTAGACA+AGG + chr3_3:10400555-10400574 None:intergenic 35.0%
CTTGTCTAGGCAATGATATA+TGG - chr3_3:10400553-10400572 Msa0441870:intron 35.0%
TGGATGCATGTTTAGATTGA+AGG - chr3_3:10400573-10400592 Msa0441870:intron 35.0%
! CTAGTGCATATTTGGAATAG+CGG + chr3_3:10400698-10400717 None:intergenic 35.0%
!! TCAATCTCAAAGAGTTGATG+CGG - chr3_3:10400818-10400837 Msa0441870:CDS 35.0%
!! GTAGAATTGTCTTTTTGAGG+TGG + chr3_3:10400903-10400922 None:intergenic 35.0%
ATATGGCCAAAAGCAAGTTA+AGG - chr3_3:10401031-10401050 Msa0441870:intron 35.0%
TATGGCCAAAAGCAAGTTAA+GGG - chr3_3:10401032-10401051 Msa0441870:intron 35.0%
TACACTTGTAGTAACTTCGA+GGG + chr3_3:10401067-10401086 None:intergenic 35.0%
GTGTACTCATTCAAATTGTC+CGG - chr3_3:10401082-10401101 Msa0441870:intron 35.0%
AAAGTAGAACGTTCTCATGA+GGG - chr3_3:10401113-10401132 Msa0441870:intron 35.0%
AACGGAGATAATCTATAAGG+GGG - chr3_3:10401142-10401161 Msa0441870:intron 35.0%
GAGTTTGCAAATTGTTGGAT+TGG + chr3_3:10401391-10401410 None:intergenic 35.0%
! ACTCATGGTAGTGTATCATT+GGG - chr3_3:10401497-10401516 Msa0441870:CDS 35.0%
TGTATCATTGGGTTATGATG+CGG - chr3_3:10401508-10401527 Msa0441870:CDS 35.0%
AACTTATTCTCTCAGGAAAC+TGG - chr3_3:10401640-10401659 Msa0441870:CDS 35.0%
! ATATCCTCGATGATGGTTAT+CGG - chr3_3:10401741-10401760 Msa0441870:CDS 35.0%
TATGGACAGAAAGTTGTCAA+AGG - chr3_3:10401773-10401792 Msa0441870:CDS 35.0%
TCGATAAGAATGACTACCTT+GGG + chr3_3:10401808-10401827 None:intergenic 35.0%
ATCGATAAGAATGACTACCT+TGG + chr3_3:10401809-10401828 None:intergenic 35.0%
!! AGCTGAATGTTTCTGTTTTG+GGG - chr3_3:10401908-10401927 Msa0441870:intron 35.0%
CATGAATCCCATTTCATTTG+CGG + chr3_3:10402358-10402377 None:intergenic 35.0%
AATGGGATTCATGTTACCAA+AGG - chr3_3:10402365-10402384 Msa0441870:intron 35.0%
ATGGGATTCATGTTACCAAA+GGG - chr3_3:10402366-10402385 Msa0441870:intron 35.0%
!! ATGAGCCATTTTGCATGTTA+AGG + chr3_3:10402428-10402447 None:intergenic 35.0%
ATTATGAATCACATGCCTCT+TGG - chr3_3:10402465-10402484 Msa0441870:five_prime_UTR 35.0%
!!! CGCTGATTTTCTTTCATTCA+AGG - chr3_3:10402667-10402686 Msa0441870:five_prime_UTR 35.0%
! GAGAGACCCAGATACAATTT+TGG - chr3_3:10398181-10398200 Msa0441870:three_prime_UTR 40.0%
!! ACCCAGATACAATTTTGGGT+CGG - chr3_3:10398186-10398205 Msa0441870:three_prime_UTR 40.0%
!! ATACAATTTTGGGTCGGGTT+CGG - chr3_3:10398192-10398211 Msa0441870:three_prime_UTR 40.0%
TAAAGTGAGGTTTGAATGGC+TGG - chr3_3:10398894-10398913 Msa0441870:intron 40.0%
AAAGTGAGGTTTGAATGGCT+GGG - chr3_3:10398895-10398914 Msa0441870:intron 40.0%
CTTGCACTAAATGGTGATTG+GGG - chr3_3:10398930-10398949 Msa0441870:intron 40.0%
AGTCTAGAAAAAAGGGACCT+TGG + chr3_3:10398972-10398991 None:intergenic 40.0%
ACGTCCGAATTCAGAACATT+CGG - chr3_3:10399019-10399038 Msa0441870:CDS 40.0%
! CTTCCCGAATGTTCTGAATT+CGG + chr3_3:10399026-10399045 None:intergenic 40.0%
AATTCAGAACATTCGGGAAG+TGG - chr3_3:10399026-10399045 Msa0441870:CDS 40.0%
! GATAACTTGTATCGCTCAAG+TGG + chr3_3:10399085-10399104 None:intergenic 40.0%
GAACTGGATTTAATGCTCCA+AGG - chr3_3:10399159-10399178 Msa0441870:intron 40.0%
ATGCTCTCTGTATTCAACCT+TGG + chr3_3:10399179-10399198 None:intergenic 40.0%
CGTGTTCCTTGCAAATTCAT+TGG - chr3_3:10399292-10399311 Msa0441870:CDS 40.0%
!! CAATTTAGGTTGCGACATCA+TGG + chr3_3:10399628-10399647 None:intergenic 40.0%
TGATGTCGCAACCTAAATTG+TGG - chr3_3:10399628-10399647 Msa0441870:CDS 40.0%
AATGTCCGTGACCACAATTT+AGG + chr3_3:10399642-10399661 None:intergenic 40.0%
CAGATTCATAACTCAGTAGG+AGG + chr3_3:10399864-10399883 None:intergenic 40.0%
AACTTTCCTGTTGTTGGAGA+TGG + chr3_3:10399904-10399923 None:intergenic 40.0%
CTGATGATAATTCTGAGCTG+CGG + chr3_3:10399951-10399970 None:intergenic 40.0%
TTCAAGCCTACAACAGATTC+AGG - chr3_3:10400030-10400049 Msa0441870:intron 40.0%
TCAAGCCTACAACAGATTCA+GGG - chr3_3:10400031-10400050 Msa0441870:intron 40.0%
CCAGCACCTTGATAAAAAGA+GGG + chr3_3:10400057-10400076 None:intergenic 40.0%
ACCAGCACCTTGATAAAAAG+AGG + chr3_3:10400058-10400077 None:intergenic 40.0%
TCCTTCACATCTTAATAGGG+TGG - chr3_3:10400283-10400302 Msa0441870:intron 40.0%
TCCACCCTATTAAGATGTGA+AGG + chr3_3:10400287-10400306 None:intergenic 40.0%
!! ATAGGGTGGACTAAATTGAC+GGG - chr3_3:10400297-10400316 Msa0441870:intron 40.0%
TGAAGCTTCAACACCATGAA+GGG + chr3_3:10400796-10400815 None:intergenic 40.0%
CAAAAGTAGCCTCCATCTTA+AGG - chr3_3:10400860-10400879 Msa0441870:CDS 40.0%
AAAACTCTGCCTTAAGATGG+AGG + chr3_3:10400872-10400891 None:intergenic 40.0%
CAATTATATCCATCCTCCGA+TGG + chr3_3:10401005-10401024 None:intergenic 40.0%
CATCGGAGGATGGATATAAT+TGG - chr3_3:10401003-10401022 Msa0441870:intron 40.0%
GTACACTTGTAGTAACTTCG+AGG + chr3_3:10401068-10401087 None:intergenic 40.0%
GAAAGTAGAACGTTCTCATG+AGG - chr3_3:10401112-10401131 Msa0441870:intron 40.0%
TTCTCATGAGGGCCATATAA+CGG - chr3_3:10401124-10401143 Msa0441870:intron 40.0%
GTACAGAAGGGAAATATAGC+TGG - chr3_3:10401302-10401321 Msa0441870:intron 40.0%
ATATAGCTGGAGCTGGTAAT+TGG - chr3_3:10401315-10401334 Msa0441870:intron 40.0%
!! GGTACTACTCACATTGATTC+AGG - chr3_3:10401416-10401435 Msa0441870:intron 40.0%
! CACTCATGGTAGTGTATCAT+TGG - chr3_3:10401496-10401515 Msa0441870:CDS 40.0%
GTAGTCTGAACAACAACTCT+AGG + chr3_3:10401710-10401729 None:intergenic 40.0%
GAAGTAGATATCCTCGATGA+TGG - chr3_3:10401734-10401753 Msa0441870:CDS 40.0%
AAGAATGACTACCTTGGGTT+GGG + chr3_3:10401803-10401822 None:intergenic 40.0%
TAAGAATGACTACCTTGGGT+TGG + chr3_3:10401804-10401823 None:intergenic 40.0%
! GTCCAATCTGTCGAATTTTG+TGG - chr3_3:10401866-10401885 Msa0441870:five_prime_UTR 40.0%
GACCACAAAATTCGACAGAT+TGG + chr3_3:10401871-10401890 None:intergenic 40.0%
ATCTGTGATCACTACATACG+AGG - chr3_3:10402008-10402027 Msa0441870:intron 40.0%
TCTGTGATCACTACATACGA+GGG - chr3_3:10402009-10402028 Msa0441870:intron 40.0%
ATGGTTCAGGTCTATGCATA+TGG + chr3_3:10402134-10402153 None:intergenic 40.0%
TTGTGAACTTGAGATGGTTC+AGG + chr3_3:10402147-10402166 None:intergenic 40.0%
GAACCATCTCAAGTTCACAA+CGG - chr3_3:10402147-10402166 Msa0441870:intron 40.0%
! TGCATCATGAATGGGTTCAT+AGG + chr3_3:10402318-10402337 None:intergenic 40.0%
GTTGTTGCTGCATCATGAAT+GGG + chr3_3:10402326-10402345 None:intergenic 40.0%
TGTTGTTGCTGCATCATGAA+TGG + chr3_3:10402327-10402346 None:intergenic 40.0%
! TTTTACATGTGAGGTCCAAG+AGG + chr3_3:10402483-10402502 None:intergenic 40.0%
CCCGACCCAAAATTGTATCT+GGG + chr3_3:10398190-10398209 None:intergenic 45.0%
!! CCCAGATACAATTTTGGGTC+GGG - chr3_3:10398187-10398206 Msa0441870:three_prime_UTR 45.0%
ACCCGACCCAAAATTGTATC+TGG + chr3_3:10398191-10398210 None:intergenic 45.0%
!! TACAATTTTGGGTCGGGTTC+GGG - chr3_3:10398193-10398212 Msa0441870:three_prime_UTR 45.0%
GAACAAAAGAATCGGATCCG+AGG + chr3_3:10398221-10398240 None:intergenic 45.0%
GAAAAAAGGGACCTTGGACT+TGG + chr3_3:10398966-10398985 None:intergenic 45.0%
CGTCCGAATTCAGAACATTC+GGG - chr3_3:10399020-10399039 Msa0441870:CDS 45.0%
! TCGAGAACTCGACTTGTTCT+CGG + chr3_3:10399111-10399130 None:intergenic 45.0%
GATAGAATTGCTGCTCGAAC+TGG - chr3_3:10399143-10399162 Msa0441870:intron 45.0%
AGTGTAGTAGGACTAAGACC+AGG + chr3_3:10399260-10399279 None:intergenic 45.0%
CGCAACCTAAATTGTGGTCA+CGG - chr3_3:10399634-10399653 Msa0441870:CDS 45.0%
TGTTGTAGGCTTGAAAGCGA+AGG + chr3_3:10400025-10400044 None:intergenic 45.0%
! TCAGGGCCCTCTTTTTATCA+AGG - chr3_3:10400048-10400067 Msa0441870:intron 45.0%
! CCCTCTTTTTATCAAGGTGC+TGG - chr3_3:10400054-10400073 Msa0441870:intron 45.0%
AAGAGGGGGTGATAGTTTGA+TGG - chr3_3:10400370-10400389 Msa0441870:intron 45.0%
CTTTCTCAGCAATCCCTTCA+TGG - chr3_3:10400780-10400799 Msa0441870:CDS 45.0%
CTGAAGCTTCAACACCATGA+AGG + chr3_3:10400797-10400816 None:intergenic 45.0%
CGGAAAACTCTGCCTTAAGA+TGG + chr3_3:10400875-10400894 None:intergenic 45.0%
GAAGAGCAAGCAGATGAAGA+GGG - chr3_3:10400930-10400949 Msa0441870:intron 45.0%
GAGGGAGAACAAAGAGTCAA+CGG - chr3_3:10400948-10400967 Msa0441870:intron 45.0%
!!! CGCTACCCTTAACTTGCTTT+TGG + chr3_3:10401040-10401059 None:intergenic 45.0%
CAAGTGGACAATCCTGAACA+TGG - chr3_3:10401236-10401255 Msa0441870:intron 45.0%
AAGGGAAATATAGCTGGAGC+TGG - chr3_3:10401308-10401327 Msa0441870:intron 45.0%
! TGACAGCTGATGTTGCTTCA+AGG + chr3_3:10401352-10401371 None:intergenic 45.0%
!! TTGGATTGGTTACCGTATCC+GGG + chr3_3:10401377-10401396 None:intergenic 45.0%
!! GTTGGATTGGTTACCGTATC+CGG + chr3_3:10401378-10401397 None:intergenic 45.0%
!! CATTGATTCAGGAGATGCAG+TGG - chr3_3:10401427-10401446 Msa0441870:intron 45.0%
GAAGAAGAGGAAGACGATCA+AGG - chr3_3:10401473-10401492 Msa0441870:CDS 45.0%
TCATTGGGTTATGATGCGGA+AGG - chr3_3:10401512-10401531 Msa0441870:CDS 45.0%
GAATCATATGCCGAGATGAG+TGG - chr3_3:10401662-10401681 Msa0441870:CDS 45.0%
TCTAGTAGCTCCACTCATCT+CGG + chr3_3:10401675-10401694 None:intergenic 45.0%
ATCGAGGATATCTACTTCGC+TGG + chr3_3:10401732-10401751 None:intergenic 45.0%
TCAAAGGAAATCCCAACCCA+AGG - chr3_3:10401789-10401808 Msa0441870:CDS 45.0%
!!! ATGTTTCTGTTTTGGGGTGC+AGG - chr3_3:10401914-10401933 Msa0441870:intron 45.0%
TACTACAAGTGCACCAATGC+AGG - chr3_3:10401940-10401959 Msa0441870:intron 45.0%
ACTACAAGTGCACCAATGCA+GGG - chr3_3:10401941-10401960 Msa0441870:intron 45.0%
AATGCTTCTAACGCAGCTCA+AGG - chr3_3:10402084-10402103 Msa0441870:intron 45.0%
ATGCCGTTGTGAACTTGAGA+TGG + chr3_3:10402153-10402172 None:intergenic 45.0%
AACCTTGCAATGTCGGGATT+GGG - chr3_3:10402261-10402280 Msa0441870:intron 45.0%
! AATGGGTTCATAGGCATTCC+AGG + chr3_3:10402309-10402328 None:intergenic 45.0%
ACCAAAGGGAGAACCAAATG+TGG - chr3_3:10402380-10402399 Msa0441870:intron 45.0%
!! TCCACATTTGGTTCTCCCTT+TGG + chr3_3:10402384-10402403 None:intergenic 45.0%
! TCAGGATTAGCGTCCACATT+TGG + chr3_3:10402396-10402415 None:intergenic 45.0%
!!! ATAAAAAAATCATTTTTTTT+TGG + chr3_3:10398579-10398598 None:intergenic 5.0%
!!! TTTATGTTTTTTTTTTTTTT+TGG - chr3_3:10398786-10398805 Msa0441870:CDS 5.0%
!! TATTATTTATATATAGTTTA+GGG + chr3_3:10400194-10400213 None:intergenic 5.0%
!! TTATTATTTATATATAGTTT+AGG + chr3_3:10400195-10400214 None:intergenic 5.0%
!!! TTTTTTTTCAAAAATAAAAA+AGG + chr3_3:10401590-10401609 None:intergenic 5.0%
GGTGGTTGAACTTCCTTGTG+TGG - chr3_3:10398254-10398273 Msa0441870:three_prime_UTR 50.0%
GTCTACCTAGTCCAAGTCCA+AGG - chr3_3:10398952-10398971 Msa0441870:intron 50.0%
TTCGGGAAGTGGTAGAACTG+AGG - chr3_3:10399037-10399056 Msa0441870:CDS 50.0%
TCGGGAAGTGGTAGAACTGA+GGG - chr3_3:10399038-10399057 Msa0441870:CDS 50.0%
GGTAGAACTGAGGGACAAGA+TGG - chr3_3:10399047-10399066 Msa0441870:CDS 50.0%
GAGGGACAAGATGGTGATTC+CGG - chr3_3:10399056-10399075 Msa0441870:CDS 50.0%
TGTATCGCTCAAGTGGGTAC+CGG + chr3_3:10399078-10399097 None:intergenic 50.0%
! GAACTCGACTTGTTCTCGGT+TGG + chr3_3:10399107-10399126 None:intergenic 50.0%
GAGAACAAGTCGAGTTCTCG+AGG - chr3_3:10399110-10399129 Msa0441870:intron 50.0%
AACAAGTCGAGTTCTCGAGG+TGG - chr3_3:10399113-10399132 Msa0441870:intron 50.0%
CCAGGCGGTATAGTCAAGTA+AGG + chr3_3:10399242-10399261 None:intergenic 50.0%
CCTTACTTGACTATACCGCC+TGG - chr3_3:10399239-10399258 Msa0441870:CDS 50.0%
GTAGTAGGACTAAGACCAGG+CGG + chr3_3:10399257-10399276 None:intergenic 50.0%
!!! GTCTTTTTGAGGTGGCGAGT+CGG + chr3_3:10400895-10400914 None:intergenic 50.0%
GGAAGAGCAAGCAGATGAAG+AGG - chr3_3:10400929-10400948 Msa0441870:intron 50.0%
AAGAGTCAACGGAGACTCGT+TGG - chr3_3:10400959-10400978 Msa0441870:intron 50.0%
TAGTTGACCCTATGCCTGAC+CGG + chr3_3:10401199-10401218 None:intergenic 50.0%
CCACTTGCATGTCAGCATGA+GGG + chr3_3:10401223-10401242 None:intergenic 50.0%
TCCACTTGCATGTCAGCATG+AGG + chr3_3:10401224-10401243 None:intergenic 50.0%
TCCTGAACATGGTGAACCAC+AGG - chr3_3:10401247-10401266 Msa0441870:intron 50.0%
CCTGAACATGGTGAACCACA+GGG - chr3_3:10401248-10401267 Msa0441870:intron 50.0%
TCTGTACATTAGCCCAGCCT+AGG + chr3_3:10401289-10401308 None:intergenic 50.0%
AGGCTGGGCTAATGTACAGA+AGG - chr3_3:10401289-10401308 Msa0441870:intron 50.0%
GGCTGGGCTAATGTACAGAA+GGG - chr3_3:10401290-10401309 Msa0441870:intron 50.0%
!! TGGATTGGTTACCGTATCCG+GGG + chr3_3:10401376-10401395 None:intergenic 50.0%
! GAAGACGATCAAGGCACTCA+TGG - chr3_3:10401482-10401501 Msa0441870:CDS 50.0%
AACAACTCTAGGCTCGCGAA+TGG + chr3_3:10401699-10401718 None:intergenic 50.0%
! TCCTCGATGATGGTTATCGG+TGG - chr3_3:10401744-10401763 Msa0441870:CDS 50.0%
! TCGATGATGGTTATCGGTGG+CGG - chr3_3:10401747-10401766 Msa0441870:CDS 50.0%
!! GGTTATCGGTGGCGGAAATA+TGG - chr3_3:10401755-10401774 Msa0441870:CDS 50.0%
! GTGCACTGTAAGGAAGCATG+TGG - chr3_3:10401963-10401982 Msa0441870:intron 50.0%
! ATTCGCATTGACGTGACTGC+TGG + chr3_3:10402067-10402086 None:intergenic 50.0%
CTCAAGTTCACAACGGCATG+AGG - chr3_3:10402154-10402173 Msa0441870:intron 50.0%
AGGTTGAACGAACCAAGCGA+AGG + chr3_3:10402180-10402199 None:intergenic 50.0%
! CTTGGTTCGTTCAACCTTCC+CGG - chr3_3:10402183-10402202 Msa0441870:intron 50.0%
! TTGGTTCGTTCAACCTTCCC+GGG - chr3_3:10402184-10402203 Msa0441870:intron 50.0%
TTCATGCCGAAGAAGCCATG+CGG + chr3_3:10402228-10402247 None:intergenic 50.0%
CCTGTCGAACCTTGCAATGT+CGG - chr3_3:10402254-10402273 Msa0441870:intron 50.0%
CTGTCGAACCTTGCAATGTC+GGG - chr3_3:10402255-10402274 Msa0441870:intron 50.0%
GAACCTTGCAATGTCGGGAT+TGG - chr3_3:10402260-10402279 Msa0441870:intron 50.0%
GAAGCTTTGCTTGCGAGGAA+GGG + chr3_3:10402287-10402306 None:intergenic 50.0%
CAACGCGCCGCAAATGAAAT+GGG - chr3_3:10402348-10402367 Msa0441870:intron 50.0%
GGCGGCCTTAACATGCAAAA+TGG - chr3_3:10402420-10402439 Msa0441870:intron 50.0%
AGGGACCTTGGACTTGGACT+AGG + chr3_3:10398960-10398979 None:intergenic 55.0%
!! TGCAATCTTGGTGACGGCTG+CGG - chr3_3:10399500-10399519 Msa0441870:CDS 55.0%
GCACAGCCATCTCCAACAAC+AGG - chr3_3:10399895-10399914 Msa0441870:CDS 55.0%
GAGGGCCCTGAATCTGTTGT+AGG + chr3_3:10400039-10400058 None:intergenic 55.0%
! AACGGAGACTCGTTGGTTGC+TGG - chr3_3:10400966-10400985 Msa0441870:intron 55.0%
! GACTCGTTGGTTGCTGGTGT+TGG - chr3_3:10400972-10400991 Msa0441870:intron 55.0%
! TCGTTGGTTGCTGGTGTTGG+CGG - chr3_3:10400975-10400994 Msa0441870:intron 55.0%
!! TGGTGTTGGCGGTACTCCAT+CGG - chr3_3:10400986-10401005 Msa0441870:intron 55.0%
CCCTCATGCTGACATGCAAG+TGG - chr3_3:10401220-10401239 Msa0441870:intron 55.0%
CCCTGTGGTTCACCATGTTC+AGG + chr3_3:10401251-10401270 None:intergenic 55.0%
GAACATGGTGAACCACAGGG+TGG - chr3_3:10401251-10401270 Msa0441870:intron 55.0%
GCAACATCAGCTGTCAACCC+CGG - chr3_3:10401356-10401375 Msa0441870:intron 55.0%
TCAGCTGTCAACCCCGGATA+CGG - chr3_3:10401362-10401381 Msa0441870:intron 55.0%
GCCACCGATAACCATCATCG+AGG + chr3_3:10401748-10401767 None:intergenic 55.0%
CCTTACAGTGCACCCTGCAT+TGG + chr3_3:10401956-10401975 None:intergenic 55.0%
CCAATGCAGGGTGCACTGTA+AGG - chr3_3:10401953-10401972 Msa0441870:intron 55.0%
GCAGCTCAAGGACAAGCTTC+TGG - chr3_3:10402096-10402115 Msa0441870:intron 55.0%
ATGACCTAGCTGCTGTCTCC+CGG + chr3_3:10402205-10402224 None:intergenic 55.0%
GGTCATCCGCATGGCTTCTT+CGG - chr3_3:10402219-10402238 Msa0441870:intron 55.0%
CCGACATTGCAAGGTTCGAC+AGG + chr3_3:10402257-10402276 None:intergenic 55.0%
GGAAGCTTTGCTTGCGAGGA+AGG + chr3_3:10402288-10402307 None:intergenic 55.0%
TCCTCGCAAGCAAAGCTTCC+TGG - chr3_3:10402288-10402307 Msa0441870:intron 55.0%
TCCAGGAAGCTTTGCTTGCG+AGG + chr3_3:10402292-10402311 None:intergenic 55.0%
GCAACGCGCCGCAAATGAAA+TGG - chr3_3:10402347-10402366 Msa0441870:intron 55.0%
GTGGACGCTAATCCTGAACG+CGG - chr3_3:10402399-10402418 Msa0441870:intron 55.0%
TGTTGGCGGTACTCCATCGG+AGG - chr3_3:10400989-10401008 Msa0441870:intron 60.0%
GACTTGGAGGAGGTTTCGGG+TGG + chr3_3:10401175-10401194 None:intergenic 60.0%
! GGCGACTTGGAGGAGGTTTC+GGG + chr3_3:10401178-10401197 None:intergenic 60.0%
! CGGCGACTTGGAGGAGGTTT+CGG + chr3_3:10401179-10401198 None:intergenic 60.0%
CGAAACCTCCTCCAAGTCGC+CGG - chr3_3:10401177-10401196 Msa0441870:intron 60.0%
CAAGTCGCCGGTCAGGCATA+GGG - chr3_3:10401189-10401208 Msa0441870:intron 60.0%
TGACTGCTGGAACGAGCAGC+GGG + chr3_3:10402054-10402073 None:intergenic 60.0%
GTGACTGCTGGAACGAGCAG+CGG + chr3_3:10402055-10402074 None:intergenic 60.0%
AACGGCATGAGGCCTTCGCT+TGG - chr3_3:10402165-10402184 Msa0441870:intron 60.0%
TGACCTAGCTGCTGTCTCCC+GGG + chr3_3:10402204-10402223 None:intergenic 60.0%
CAGCAGCTAGGTCATCCGCA+TGG - chr3_3:10402210-10402229 Msa0441870:intron 60.0%
GGCCCAATCCCGACATTGCA+AGG + chr3_3:10402266-10402285 None:intergenic 60.0%
GACGCTAATCCTGAACGCGG+CGG - chr3_3:10402402-10402421 Msa0441870:intron 60.0%
ATGTTAAGGCCGCCGCGTTC+AGG + chr3_3:10402414-10402433 None:intergenic 60.0%
! TGGGTCGGGTTCGGGTTCCT+CGG - chr3_3:10398201-10398220 Msa0441870:three_prime_UTR 65.0%
GGCGGTACTCCATCGGAGGA+TGG - chr3_3:10400993-10401012 Msa0441870:intron 65.0%
! ATGCCTGACCGGCGACTTGG+AGG + chr3_3:10401188-10401207 None:intergenic 65.0%
CCTATGCCTGACCGGCGACT+TGG + chr3_3:10401191-10401210 None:intergenic 65.0%
CCAAGTCGCCGGTCAGGCAT+AGG - chr3_3:10401188-10401207 Msa0441870:intron 65.0%
GGTGAACCACAGGGTGGCAG+TGG - chr3_3:10401257-10401276 Msa0441870:intron 65.0%
GAACCACAGGGTGGCAGTGG+CGG - chr3_3:10401260-10401279 Msa0441870:intron 65.0%
CAGTGGCGGTGACCTAGGCT+GGG - chr3_3:10401274-10401293 Msa0441870:intron 65.0%
GACTGCTGGAACGAGCAGCG+GGG + chr3_3:10402053-10402072 None:intergenic 65.0%
CTAGCTGCTGTCTCCCGGGA+AGG + chr3_3:10402200-10402219 None:intergenic 65.0%
CTTCCCGGGAGACAGCAGCT+AGG - chr3_3:10402198-10402217 Msa0441870:intron 65.0%
! CCTGACCGGCGACTTGGAGG+AGG + chr3_3:10401185-10401204 None:intergenic 70.0%
CCTCCTCCAAGTCGCCGGTC+AGG - chr3_3:10401182-10401201 Msa0441870:intron 70.0%
TCACCGCCACTGCCACCCTG+TGG + chr3_3:10401266-10401285 None:intergenic 70.0%
GGTGGCAGTGGCGGTGACCT+AGG - chr3_3:10401269-10401288 Msa0441870:intron 70.0%
GCAGTGGCGGTGACCTAGGC+TGG - chr3_3:10401273-10401292 Msa0441870:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 10398075 10402699 10398075 ID=Msa0441870;Name=Msa0441870
chr3_3 mRNA 10398075 10402699 10398075 ID=Msa0441870-mRNA-1;Parent=Msa0441870;Name=Msa0441870-mRNA-1;_AED=0.07;_eAED=0.07;_QI=278|1|1|1|0.8|0.66|6|199|702
chr3_3 exon 10398075 10398838 10398075 ID=Msa0441870-mRNA-1:exon:2299;Parent=Msa0441870-mRNA-1
chr3_3 exon 10398964 10399119 10398964 ID=Msa0441870-mRNA-1:exon:2298;Parent=Msa0441870-mRNA-1
chr3_3 exon 10399216 10400009 10399216 ID=Msa0441870-mRNA-1:exon:2297;Parent=Msa0441870-mRNA-1
chr3_3 exon 10400691 10400879 10400691 ID=Msa0441870-mRNA-1:exon:2296;Parent=Msa0441870-mRNA-1
chr3_3 exon 10401461 10401895 10401461 ID=Msa0441870-mRNA-1:exon:2295;Parent=Msa0441870-mRNA-1
chr3_3 exon 10402452 10402699 10402452 ID=Msa0441870-mRNA-1:exon:2294;Parent=Msa0441870-mRNA-1
chr3_3 five_prime_UTR 10402452 10402699 10402452 ID=Msa0441870-mRNA-1:five_prime_utr;Parent=Msa0441870-mRNA-1
chr3_3 five_prime_UTR 10401866 10401895 10401866 ID=Msa0441870-mRNA-1:five_prime_utr;Parent=Msa0441870-mRNA-1
chr3_3 CDS 10401461 10401865 10401461 ID=Msa0441870-mRNA-1:cds;Parent=Msa0441870-mRNA-1
chr3_3 CDS 10400691 10400879 10400691 ID=Msa0441870-mRNA-1:cds;Parent=Msa0441870-mRNA-1
chr3_3 CDS 10399216 10400009 10399216 ID=Msa0441870-mRNA-1:cds;Parent=Msa0441870-mRNA-1
chr3_3 CDS 10398964 10399119 10398964 ID=Msa0441870-mRNA-1:cds;Parent=Msa0441870-mRNA-1
chr3_3 CDS 10398274 10398838 10398274 ID=Msa0441870-mRNA-1:cds;Parent=Msa0441870-mRNA-1
chr3_3 three_prime_UTR 10398075 10398273 10398075 ID=Msa0441870-mRNA-1:three_prime_utr;Parent=Msa0441870-mRNA-1
Gene Sequence

>Msa0441870

ATGGCTGGGATTGATGAAAATCTTGCACTAAATGGTGATTGGGGTCTACCTAGTCCAAGTCCAAGGTCCCTTTTTTCTAGACTGCTAGAAGAAGATAATAATAATGTAATACGTCCGAATTCAGAACATTCGGGAAGTGGTAGAACTGAGGGACAAGATGGTGATTCCGGTACCCACTTGAGCGATACAAGTTATCCAACCGAGAACAAGTCGAGTTCTCGAGGTGGTCTTGTTGATAGAATTGCTGCTCGAACTGGATTTAATGCTCCAAGGTTGAATACAGAGAGCATTAGATCTACTGAACTCTCACTCAATTCTGAGATTCAGTCACCTTACTTGACTATACCGCCTGGTCTTAGTCCTACTACACTTTTAGATTCTCCCGTGTTCCTTGCAAATTCATTGGCACAGCCATCTCCAACAACAGGAAAGTTTCCATTTGTTTCAAATGGCAACATCCGCAGCTCAGAATTATCATCAGATGTTCAAGAAAAATCTAAACATAATGGCTTTAATGATATTTATGCATCGTCCTTCGCTTTCAAGCCTACAACAGATTCAGGGCCCTCTTTTTATCAAGGTGCTGGTAGAAATATGAATACAACTACACTTTCTCAGCAATCCCTTCATGGTGTTGAAGCTTCAGTTCAATCTCAAAGAGTTGATGCGGTCAATGTTCAAACTGAGAACAAAAGTAGCCTCCATCTTAAGGCAGAGTTTTCCGACTCGCCACCTCAAAAAGACAATTCTACACATTTGGAAGAGCAAGCAGATGAAGAGGGAGAACAAAGAGTCAACGGAGACTCGTTGGTTGCTGGTGTTGGCGGTACTCCATCGGAGGATGGATATAATTGGAGAAAATATGGCCAAAAGCAAGTTAAGGGTAGCGAGTACCCTCGAAGTTACTACAAGTGTACTCATTCAAATTGTCCGGTTAAAAAGAAAGTAGAACGTTCTCATGAGGGCCATATAACGGAGATAATCTATAAGGGGGCACACAACCACCCGAAACCTCCTCCAAGTCGCCGGTCAGGCATAGGGTCAACTAACCCTCATGCTGACATGCAAGTGGACAATCCTGAACATGGTGAACCACAGGGTGGCAGTGGCGGTGACCTAGGCTGGGCTAATGTACAGAAGGGAAATATAGCTGGAGCTGGTAATTGGAAGCATGACAACCTTGAAGCAACATCAGCTGTCAACCCCGGATACGGTAACCAATCCAACAATTTGCAAACTCAAAATGGTACTACTCACATTGATTCAGGAGATGCAGTGGATCGCTCGTCTACATTTTCAAATGAAGAAGAGGAAGACGATCAAGGCACTCATGGTAGTGTATCATTGGGTTATGATGCGGAAGGAGATGAATCAGAGTCTAAAAGAAGGAAACTGGAATCATATGCCGAGATGAGTGGAGCTACTAGAGCCATTCGCGAGCCTAGAGTTGTTGTTCAGACTACCAGCGAAGTAGATATCCTCGATGATGGTTATCGGTGGCGGAAATATGGACAGAAAGTTGTCAAAGGAAATCCCAACCCAAGGAGTTACTACAAGTGCACCAATGCAGGGTGCACTGTAAGGAAGCATGTGGAGAGAGCATCACATGACCTTAAATCTGTGATCACTACATACGAGGGAAAGCACAATCACGATGTCCCCGCTGCTCGTTCCAGCAGTCACGTCAATGCGAATGCTTCTAACGCAGCTCAAGGACAAGCTTCTGGTCTTCTTCAAAACCATATGCATAGACCTGAACCATCTCAAGTTCACAACGGCATGAGGCCTTCGCTTGGTTCGTTCAACCTTCCCGGGAGACAGCAGCTAGGTCATCCGCATGGCTTCTTCGGCATGAATCAACACCTGTCGAACCTTGCAATGTCGGGATTGGGCCCTTCCTCGCAAGCAAAGCTTCCTGGAATGCCTATGAACCCATTCATGATGCAGCAACAACAGCAACGCGCCGCAAATGAAATGGGATTCATGTTACCAAAGGGAGAACCAAATGTGGACGCTAATCCTGAACGCGGCGGCCTTAACATGCAAAATGGCTCATCATCAATGTATCAAGATATTATGAATCACATGCCTCTTGGACCTCACATGTAA
Protein sequence

>Msa0441870

MAGIDENLALNGDWGLPSPSPRSLFSRLLEEDNNNVIRPNSEHSGSGRTEGQDGDSGTHLSDTSYPTENKSSSRGGLVDRIAARTGFNAPRLNTESIRSTELSLNSEIQSPYLTIPPGLSPTTLLDSPVFLANSLAQPSPTTGKFPFVSNGNIRSSELSSDVQEKSKHNGFNDIYASSFAFKPTTDSGPSFYQGAGRNMNTTTLSQQSLHGVEASVQSQRVDAVNVQTENKSSLHLKAEFSDSPPQKDNSTHLEEQADEEGEQRVNGDSLVAGVGGTPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHSNCPVKKKVERSHEGHITEIIYKGAHNHPKPPPSRRSGIGSTNPHADMQVDNPEHGEPQGGSGGDLGWANVQKGNIAGAGNWKHDNLEATSAVNPGYGNQSNNLQTQNGTTHIDSGDAVDRSSTFSNEEEEDDQGTHGSVSLGYDAEGDESESKRRKLESYAEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARSSSHVNANASNAAQGQASGLLQNHMHRPEPSQVHNGMRPSLGSFNLPGRQQLGHPHGFFGMNQHLSNLAMSGLGPSSQAKLPGMPMNPFMMQQQQQRAANEMGFMLPKGEPNVDANPERGGLNMQNGSSSMYQDIMNHMPLGPHM*