Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0441970 | KEH33239.1 | 86.093 | 151 | 18 | 1 | 1 | 151 | 8 | 155 | 2.55e-86 | 259 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0441970 | sp|Q9FKI4|NAA10_ARATH | 45.455 | 154 | 73 | 4 | 6 | 148 | 2 | 155 | 3.27e-29 | 108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0441970 | A0A072UTR7 | 86.093 | 151 | 18 | 1 | 1 | 151 | 8 | 155 | 1.22e-86 | 259 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0441970 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0441970 | MtrunA17_Chr3g0088851 | 85.567 | 97 | 14 | 0 | 1 | 97 | 1 | 97 | 3.17e-56 | 172 |
| Msa0441970 | MtrunA17_Chr3g0090311 | 48.387 | 155 | 69 | 4 | 6 | 149 | 2 | 156 | 2.34e-34 | 118 |
| Msa0441970 | MtrunA17_Chr3g0098461 | 38.710 | 155 | 86 | 5 | 1 | 149 | 1 | 152 | 8.57e-21 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0441970 | AT5G13780.1 | 45.455 | 154 | 73 | 4 | 6 | 148 | 2 | 155 | 3.32e-30 | 108 |
Find 69 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGAGTTCAATAGTTTAA+TGG | 0.211916 | 3_3:-10762046 | None:intergenic |
| TCACACAATGTGCCAATATT+CGG | 0.301530 | 3_3:+10764461 | None:intergenic |
| CGCGTTAATCTTCAGTTTCA+AGG | 0.332996 | 3_3:-10764807 | Msa0441970:five_prime_UTR |
| CACACAATGTGCCAATATTC+GGG | 0.341666 | 3_3:+10764462 | None:intergenic |
| GAGCTGCAGAGTTGCTCTTC+CGG | 0.345662 | 3_3:+10763619 | None:intergenic |
| AATCCTTAACACCTAATCTA+TGG | 0.347939 | 3_3:+10762201 | None:intergenic |
| TCTTGGTTTGTTTGAAAAGA+TGG | 0.363394 | 3_3:-10763598 | Msa0441970:CDS |
| GATTTAACATGTAGTACTTC+GGG | 0.365914 | 3_3:-10762182 | Msa0441970:three_prime_UTR |
| CTTGTTACTCGCCCGAATAT+TGG | 0.371742 | 3_3:-10764473 | Msa0441970:CDS |
| CTGAGTAATGAGAGGAAATA+TGG | 0.402178 | 3_3:-10762115 | Msa0441970:three_prime_UTR |
| TAACCATAGATTAGGTGTTA+AGG | 0.408808 | 3_3:-10762204 | Msa0441970:three_prime_UTR |
| TTCAGTTTCAGGTGTCAAAC+AGG | 0.420133 | 3_3:-10762392 | Msa0441970:intron |
| TTCTTCGGCCAGTCAAGATT+AGG | 0.424158 | 3_3:-10762343 | Msa0441970:intron |
| ATTTGATATAACCATAGATT+AGG | 0.426119 | 3_3:-10762212 | Msa0441970:three_prime_UTR |
| CTCCTCATCATCAAAATACT+TGG | 0.430558 | 3_3:+10763551 | None:intergenic |
| CTCAATTATCACGGATTCAC+AGG | 0.434552 | 3_3:+10762078 | None:intergenic |
| CGCCGAAAACACCATGGAAC+AGG | 0.435090 | 3_3:-10764282 | Msa0441970:intron |
| ATTGTGTGAAAAGCTTATTC+AGG | 0.437024 | 3_3:-10764447 | Msa0441970:CDS |
| TGTATAAGAGTCGCAACAAT+TGG | 0.448437 | 3_3:-10764527 | Msa0441970:CDS |
| GTTGCTTACCTCCTCTCTAA+AGG | 0.454440 | 3_3:-10764398 | Msa0441970:CDS |
| CTTGGTTTGTTTGAAAAGAT+GGG | 0.459057 | 3_3:-10763597 | Msa0441970:CDS |
| AAGAGCAACTCTGCAGCTCT+TGG | 0.462439 | 3_3:-10763615 | Msa0441970:CDS |
| CAATTGGAGACGTATTAGAT+TGG | 0.472024 | 3_3:-10764511 | Msa0441970:CDS |
| AGATTAACGCGGCAGCGGTA+TGG | 0.482608 | 3_3:+10764819 | None:intergenic |
| CGTAAACGTGGTATCGCTAC+TGG | 0.485343 | 3_3:-10764317 | Msa0441970:CDS |
| GGATTTAACATGTAGTACTT+CGG | 0.485711 | 3_3:-10762183 | Msa0441970:three_prime_UTR |
| AAGACGTCTCAGTGCACGTC+CGG | 0.493597 | 3_3:-10763638 | Msa0441970:CDS |
| GTCTTGAGGAAGATACTCAA+TGG | 0.508440 | 3_3:-10763519 | Msa0441970:CDS |
| CCTTAAAACCTAATCTTGAC+TGG | 0.512563 | 3_3:+10762335 | None:intergenic |
| AGGAGGAGGAAGACCTTCTT+CGG | 0.515337 | 3_3:-10762358 | Msa0441970:three_prime_UTR |
| AGGAATTCTCCTGCAGGAGG+AGG | 0.521007 | 3_3:-10762372 | Msa0441970:three_prime_UTR |
| CTTCCTCTTCACCTTTAGAG+AGG | 0.526944 | 3_3:+10764387 | None:intergenic |
| TAATCTTGACTGGCCGAAGA+AGG | 0.527365 | 3_3:+10762345 | None:intergenic |
| GGTGGCTCTGCTCCGAGCAA+TGG | 0.529753 | 3_3:+10764852 | None:intergenic |
| ATATTCCTTCTCAATTATCA+CGG | 0.533917 | 3_3:+10762069 | None:intergenic |
| ACTGAAGATTAACGCGGCAG+CGG | 0.535458 | 3_3:+10764814 | None:intergenic |
| AGTAACAATGTCGTCAAAGA+AGG | 0.537395 | 3_3:-10764552 | Msa0441970:exon |
| CCTCTTCACCTTTAGAGAGG+AGG | 0.539853 | 3_3:+10764390 | None:intergenic |
| CCTCCTCTCTAAAGGTGAAG+AGG | 0.541904 | 3_3:-10764390 | Msa0441970:CDS |
| GAAGGTCTTCCTCCTCCTGC+AGG | 0.542231 | 3_3:+10762363 | None:intergenic |
| TCTTGAGGAAGATACTCAAT+GGG | 0.545420 | 3_3:-10763518 | Msa0441970:CDS |
| GCGTTAATCTTCAGTTTCAA+GGG | 0.547826 | 3_3:-10764806 | Msa0441970:intron |
| CTCTCTAAAGGTGAAGAGGA+AGG | 0.549289 | 3_3:-10764386 | Msa0441970:CDS |
| GCATACTTCAAAATATTCAC+AGG | 0.554625 | 3_3:+10762153 | None:intergenic |
| TGGTCTCTTTACAACAGAGA+AGG | 0.557902 | 3_3:-10764882 | Msa0441970:five_prime_UTR |
| ATAGGTATGGTGAACAAAGA+GGG | 0.575631 | 3_3:+10764340 | None:intergenic |
| GTTCATAAGACATACTTCAA+AGG | 0.585016 | 3_3:+10762236 | None:intergenic |
| TCAAACAGGAATTCTCCTGC+AGG | 0.585715 | 3_3:-10762378 | Msa0441970:three_prime_UTR |
| AACAAACCTAACCTGTTCCA+TGG | 0.593695 | 3_3:+10764271 | None:intergenic |
| TGAAAAGCTTATTCAGGTCG+CGG | 0.594058 | 3_3:-10764441 | Msa0441970:CDS |
| CAGCGGTATGGTCTCCGACA+CGG | 0.595128 | 3_3:+10764831 | None:intergenic |
| TGAATCCGTGATAATTGAGA+AGG | 0.596929 | 3_3:-10762074 | Msa0441970:three_prime_UTR |
| AACCGCCGCCGAAAACACCA+TGG | 0.598598 | 3_3:-10764288 | Msa0441970:CDS |
| TCTCTAAAGGTGAAGAGGAA+GGG | 0.603620 | 3_3:-10764385 | Msa0441970:CDS |
| GATAGGTATGGTGAACAAAG+AGG | 0.607709 | 3_3:+10764339 | None:intergenic |
| AGGAGGACGCTATTGTCTTG+AGG | 0.615172 | 3_3:-10763533 | Msa0441970:CDS |
| AAAGGTGAAGAGGAAGGGAA+TGG | 0.618992 | 3_3:-10764380 | Msa0441970:CDS |
| TTACACACTTCATGAGGTGA+AGG | 0.620811 | 3_3:-10763574 | Msa0441970:CDS |
| CACCATACCTATCGTAAACG+TGG | 0.628725 | 3_3:-10764329 | Msa0441970:CDS |
| GAGTGGGTCTCACAGTTAGG+TGG | 0.634645 | 3_3:+10763485 | None:intergenic |
| AACAGGAATTCTCCTGCAGG+AGG | 0.644166 | 3_3:-10762375 | Msa0441970:three_prime_UTR |
| AGTGAGTGCTGAGTAATGAG+AGG | 0.647864 | 3_3:-10762123 | Msa0441970:three_prime_UTR |
| TACCACGTTTACGATAGGTA+TGG | 0.651983 | 3_3:+10764327 | None:intergenic |
| CAGGTCGCGGACGATTGCAG+CGG | 0.655833 | 3_3:-10764428 | Msa0441970:CDS |
| GATGGGTTACACACTTCATG+AGG | 0.658895 | 3_3:-10763580 | Msa0441970:CDS |
| TCGGAGCAGAGCCACCGTGT+CGG | 0.672783 | 3_3:-10764845 | Msa0441970:five_prime_UTR |
| AGCGATACCACGTTTACGAT+AGG | 0.681782 | 3_3:+10764322 | None:intergenic |
| CTTGAAACTGAAGATTAACG+CGG | 0.722674 | 3_3:+10764808 | None:intergenic |
| CGGTATGGTCTCCGACACGG+TGG | 0.735199 | 3_3:+10764834 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAACTTAGAAAGAAATTA+GGG | + | chr3_3:10762260-10762279 | None:intergenic | 15.0% |
| !! | GAAAATAATTTAAACTTTGA+TGG | - | chr3_3:10763511-10763530 | Msa0441970:CDS | 15.0% |
| !! | CATAAACTTAGAAAGAAATT+AGG | + | chr3_3:10762261-10762280 | None:intergenic | 20.0% |
| !!! | AAGAAGTGCATTTTTTTAAT+TGG | - | chr3_3:10762291-10762310 | Msa0441970:three_prime_UTR | 20.0% |
| !!! | TTTGGAATTTTAAAGAGAAT+GGG | + | chr3_3:10762327-10762346 | None:intergenic | 20.0% |
| !!! | TTTTGGAATTTTAAAGAGAA+TGG | + | chr3_3:10762328-10762347 | None:intergenic | 20.0% |
| !!! | TTCTAAACATTGTTATGTTT+TGG | + | chr3_3:10762345-10762364 | None:intergenic | 20.0% |
| !!! | TCTGTTATAATTTTGTGTTT+TGG | - | chr3_3:10762698-10762717 | Msa0441970:intron | 20.0% |
| !!! | ATAATTTTGTGTTTTGGAAT+AGG | - | chr3_3:10762704-10762723 | Msa0441970:intron | 20.0% |
| !!! | TTGATAGTCACTAATATTTA+GGG | - | chr3_3:10763610-10763629 | Msa0441970:CDS | 20.0% |
| !! | CAATAAATTAACAGAACAAA+TGG | + | chr3_3:10764306-10764325 | None:intergenic | 20.0% |
| !! | CATTTGTTCTGTTAATTTAT+TGG | - | chr3_3:10764304-10764323 | Msa0441970:CDS | 20.0% |
| !!! | ACTTTGTATATTTTGTAGTA+TGG | - | chr3_3:10764641-10764660 | Msa0441970:intron | 20.0% |
| !! | ATTTGATATAACCATAGATT+AGG | - | chr3_3:10764727-10764746 | Msa0441970:intron | 20.0% |
| !! | GGGTTTCAATAGAAATTTTT+GGG | + | chr3_3:10762209-10762228 | None:intergenic | 25.0% |
| !! | AGGGTTTCAATAGAAATTTT+TGG | + | chr3_3:10762210-10762229 | None:intergenic | 25.0% |
| !! | TTTCTTCTTGTTAGTGATTT+TGG | - | chr3_3:10763070-10763089 | Msa0441970:intron | 25.0% |
| ! | GAAAACCAAAAGAAAAATCT+CGG | + | chr3_3:10763154-10763173 | None:intergenic | 25.0% |
| !!! | TTTTCTTGTTTCCTAATCTT+GGG | - | chr3_3:10763169-10763188 | Msa0441970:intron | 25.0% |
| !! | ACATTGTAACAGACTTTTAA+TGG | + | chr3_3:10763256-10763275 | None:intergenic | 25.0% |
| ! | TCAAGAAAATGGAAAAAGAT+GGG | + | chr3_3:10763482-10763501 | None:intergenic | 25.0% |
| ! | TTCAAGAAAATGGAAAAAGA+TGG | + | chr3_3:10763483-10763502 | None:intergenic | 25.0% |
| ! | TCACAATACATTCAAGAAAA+TGG | + | chr3_3:10763493-10763512 | None:intergenic | 25.0% |
| !! | ATAATTTAAACTTTGATGGC+TGG | - | chr3_3:10763515-10763534 | Msa0441970:CDS | 25.0% |
| !! | CTTGATAGTCACTAATATTT+AGG | - | chr3_3:10763609-10763628 | Msa0441970:CDS | 25.0% |
| !!! | TGTTGCTTATTGATTTCAAA+TGG | - | chr3_3:10763909-10763928 | Msa0441970:intron | 25.0% |
| ! | TAACATTGTGTAAAGTAACA+TGG | + | chr3_3:10763954-10763973 | None:intergenic | 25.0% |
| ! | AAATATACTGTTTGAGTATG+TGG | + | chr3_3:10764042-10764061 | None:intergenic | 25.0% |
| !! | TGATGAAGTCTAAAATCAAA+GGG | + | chr3_3:10764199-10764218 | None:intergenic | 25.0% |
| !! | TTGATGAAGTCTAAAATCAA+AGG | + | chr3_3:10764200-10764219 | None:intergenic | 25.0% |
| !! | TTTGTCTTACAGATATTTTC+AGG | - | chr3_3:10764246-10764265 | Msa0441970:intron | 25.0% |
| !! | TTGTCTTACAGATATTTTCA+GGG | - | chr3_3:10764247-10764266 | Msa0441970:intron | 25.0% |
| ! | GAAAATACGTAAGTAGTAAA+AGG | + | chr3_3:10764435-10764454 | None:intergenic | 25.0% |
| !!! | TTAGGTTTTAAGGATTTATC+AGG | - | chr3_3:10764614-10764633 | Msa0441970:intron | 25.0% |
| !!! | AGTATGGTATCTTTTAAAGT+AGG | - | chr3_3:10764657-10764676 | Msa0441970:intron | 25.0% |
| !!! | GTATGGTATCTTTTAAAGTA+GGG | - | chr3_3:10764658-10764677 | Msa0441970:intron | 25.0% |
| !!! | TATGGTATCTTTTAAAGTAG+GGG | - | chr3_3:10764659-10764678 | Msa0441970:intron | 25.0% |
| ! | ATATTCCTTCTCAATTATCA+CGG | + | chr3_3:10764873-10764892 | None:intergenic | 25.0% |
| TGATTTCTCACTCAAAATGA+GGG | + | chr3_3:10762229-10762248 | None:intergenic | 30.0% | |
| ATGATTTCTCACTCAAAATG+AGG | + | chr3_3:10762230-10762249 | None:intergenic | 30.0% | |
| ATTGTGTGAAAAGCTTATTC+AGG | - | chr3_3:10762492-10762511 | Msa0441970:intron | 30.0% | |
| TCCATACATAACCAGTTAAA+AGG | + | chr3_3:10762769-10762788 | None:intergenic | 30.0% | |
| ! | TATGTATGGAGTTGGTTTAA+TGG | - | chr3_3:10762779-10762798 | Msa0441970:intron | 30.0% |
| ATTCTACCAGAAAATCATCA+CGG | + | chr3_3:10762908-10762927 | None:intergenic | 30.0% | |
| !! | GTTTTCTTGTTTCCTAATCT+TGG | - | chr3_3:10763168-10763187 | Msa0441970:intron | 30.0% |
| ! | TTTCTTGTTTCCTAATCTTG+GGG | - | chr3_3:10763170-10763189 | Msa0441970:intron | 30.0% |
| ACAATGTGTAATTTGACTGA+AGG | - | chr3_3:10763269-10763288 | Msa0441970:intron | 30.0% | |
| !! | TCTTGGTTTGTTTGAAAAGA+TGG | - | chr3_3:10763341-10763360 | Msa0441970:intron | 30.0% |
| !! | CTTGGTTTGTTTGAAAAGAT+GGG | - | chr3_3:10763342-10763361 | Msa0441970:intron | 30.0% |
| AAGAAAATGGAAAAAGATGG+GGG | + | chr3_3:10763480-10763499 | None:intergenic | 30.0% | |
| CAAGAAAATGGAAAAAGATG+GGG | + | chr3_3:10763481-10763500 | None:intergenic | 30.0% | |
| CTGGTTTAATATTGACATGA+TGG | - | chr3_3:10763534-10763553 | Msa0441970:CDS | 30.0% | |
| ATTATCCAAGGATGAAAAGT+CGG | + | chr3_3:10763695-10763714 | None:intergenic | 30.0% | |
| ! | TGTAAAGAGCATATTATCCA+AGG | + | chr3_3:10763707-10763726 | None:intergenic | 30.0% |
| TGGATAATATGCTCTTTACA+TGG | - | chr3_3:10763707-10763726 | Msa0441970:intron | 30.0% | |
| !! | TTTCTTGAGTGTAGTTCTAA+TGG | - | chr3_3:10763820-10763839 | Msa0441970:intron | 30.0% |
| !! | TTCTTGAGTGTAGTTCTAAT+GGG | - | chr3_3:10763821-10763840 | Msa0441970:intron | 30.0% |
| !! | TGCTTATTGATTTCAAATGG+AGG | - | chr3_3:10763912-10763931 | Msa0441970:intron | 30.0% |
| TCTAAAAAGTCGTCCTTATA+AGG | + | chr3_3:10763986-10764005 | None:intergenic | 30.0% | |
| AAGCATAAAAGGATTAAAGC+TGG | + | chr3_3:10764132-10764151 | None:intergenic | 30.0% | |
| ! | TTAATCCTTTTATGCTTCCT+TGG | - | chr3_3:10764135-10764154 | Msa0441970:intron | 30.0% |
| ! | TAATCCTTTTATGCTTCCTT+GGG | - | chr3_3:10764136-10764155 | Msa0441970:intron | 30.0% |
| ! | TGTCTTACAGATATTTTCAG+GGG | - | chr3_3:10764248-10764267 | Msa0441970:intron | 30.0% |
| TAATATGTTGCTCATTATCG+AGG | - | chr3_3:10764334-10764353 | Msa0441970:CDS | 30.0% | |
| ATTATCGAGGATTCAGATTA+GGG | - | chr3_3:10764347-10764366 | Msa0441970:CDS | 30.0% | |
| ! | TGCTGAAGTTGATTAAATCA+TGG | - | chr3_3:10764513-10764532 | Msa0441970:CDS | 30.0% |
| ! | GATTAAATCATGGTGTTTTC+TGG | - | chr3_3:10764523-10764542 | Msa0441970:CDS | 30.0% |
| GTTCATAAGACATACTTCAA+AGG | + | chr3_3:10764706-10764725 | None:intergenic | 30.0% | |
| TAACCATAGATTAGGTGTTA+AGG | - | chr3_3:10764735-10764754 | Msa0441970:intron | 30.0% | |
| AATCCTTAACACCTAATCTA+TGG | + | chr3_3:10764741-10764760 | None:intergenic | 30.0% | |
| GGATTTAACATGTAGTACTT+CGG | - | chr3_3:10764756-10764775 | Msa0441970:intron | 30.0% | |
| GATTTAACATGTAGTACTTC+GGG | - | chr3_3:10764757-10764776 | Msa0441970:intron | 30.0% | |
| GCATACTTCAAAATATTCAC+AGG | + | chr3_3:10764789-10764808 | None:intergenic | 30.0% | |
| CTTGAAACTGAAGATTAACG+CGG | + | chr3_3:10762134-10762153 | None:intergenic | 35.0% | |
| GCGTTAATCTTCAGTTTCAA+GGG | - | chr3_3:10762133-10762152 | Msa0441970:three_prime_UTR | 35.0% | |
| AAGCATAGCAGACGAATTTA+AGG | + | chr3_3:10762173-10762192 | None:intergenic | 35.0% | |
| TTGTACCTGTTTCATGGTTA+GGG | + | chr3_3:10762368-10762387 | None:intergenic | 35.0% | |
| ! | TGTTACTTGTACCTGTTTCA+TGG | + | chr3_3:10762374-10762393 | None:intergenic | 35.0% |
| AGTAACAATGTCGTCAAAGA+AGG | - | chr3_3:10762387-10762406 | Msa0441970:intron | 35.0% | |
| TGTATAAGAGTCGCAACAAT+TGG | - | chr3_3:10762412-10762431 | Msa0441970:intron | 35.0% | |
| CAATTGGAGACGTATTAGAT+TGG | - | chr3_3:10762428-10762447 | Msa0441970:intron | 35.0% | |
| TCACACAATGTGCCAATATT+CGG | + | chr3_3:10762481-10762500 | None:intergenic | 35.0% | |
| ATAGGTATGGTGAACAAAGA+GGG | + | chr3_3:10762602-10762621 | None:intergenic | 35.0% | |
| !! | GCCTTTTAACTGGTTATGTA+TGG | - | chr3_3:10762765-10762784 | Msa0441970:intron | 35.0% |
| TAACTGGTTATGTATGGAGT+TGG | - | chr3_3:10762771-10762790 | Msa0441970:intron | 35.0% | |
| ! | ATGGAGTTGGTTTAATGGTT+AGG | - | chr3_3:10762784-10762803 | Msa0441970:intron | 35.0% |
| TAATGGTTAGGTATGAAGCT+TGG | - | chr3_3:10762796-10762815 | Msa0441970:intron | 35.0% | |
| TTCTACCAGAAAATCATCAC+GGG | + | chr3_3:10762907-10762926 | None:intergenic | 35.0% | |
| CTAGGATTATCTTCTATTCC+TGG | - | chr3_3:10762942-10762961 | Msa0441970:intron | 35.0% | |
| TTATCTTCTATTCCTGGAAG+TGG | - | chr3_3:10762948-10762967 | Msa0441970:intron | 35.0% | |
| ! | CTTCTTGTTAGTGATTTTGG+TGG | - | chr3_3:10763073-10763092 | Msa0441970:intron | 35.0% |
| !! | TTGTTAGTGATTTTGGTGGT+TGG | - | chr3_3:10763077-10763096 | Msa0441970:intron | 35.0% |
| AACCAAAAGAAAAATCTCGG+AGG | + | chr3_3:10763151-10763170 | None:intergenic | 35.0% | |
| ! | TCTCTCTACCTTGATGTTTT+TGG | - | chr3_3:10763211-10763230 | Msa0441970:intron | 35.0% |
| ATTGACGACCAAAAACATCA+AGG | + | chr3_3:10763222-10763241 | None:intergenic | 35.0% | |
| ATGTGTAATTTGACTGAAGG+TGG | - | chr3_3:10763272-10763291 | Msa0441970:intron | 35.0% | |
| TGTGTAATTTGACTGAAGGT+GGG | - | chr3_3:10763273-10763292 | Msa0441970:intron | 35.0% | |
| CTCCTCATCATCAAAATACT+TGG | + | chr3_3:10763391-10763410 | None:intergenic | 35.0% | |
| !!! | CAAGTATTTTGATGATGAGG+AGG | - | chr3_3:10763389-10763408 | Msa0441970:intron | 35.0% |
| TCTTGAGGAAGATACTCAAT+GGG | - | chr3_3:10763421-10763440 | Msa0441970:intron | 35.0% | |
| AGAAAATGGAAAAAGATGGG+GGG | + | chr3_3:10763479-10763498 | None:intergenic | 35.0% | |
| ! | TTTTGATCGCTATCTTTGTG+TGG | - | chr3_3:10763647-10763666 | Msa0441970:CDS | 35.0% |
| AGTCGGTTAAATACTTGCAT+TGG | + | chr3_3:10763678-10763697 | None:intergenic | 35.0% | |
| !! | TTTAACCGACTTTTCATCCT+TGG | - | chr3_3:10763687-10763706 | Msa0441970:intron | 35.0% |
| CAGTGCTTTCTATTTCATTG+TGG | - | chr3_3:10763873-10763892 | Msa0441970:intron | 35.0% | |
| GTTAACTACGAGACCTTATA+AGG | - | chr3_3:10763970-10763989 | Msa0441970:intron | 35.0% | |
| ! | AAGGACGACTTTTTAGATAG+TGG | - | chr3_3:10763989-10764008 | Msa0441970:intron | 35.0% |
| CATTATCGAGGATTCAGATT+AGG | - | chr3_3:10764346-10764365 | Msa0441970:CDS | 35.0% | |
| TACTCGCAATTCATTAAACG+AGG | + | chr3_3:10764460-10764479 | None:intergenic | 35.0% | |
| ! | TGTTTTCTGGATTCAGTTTC+AGG | - | chr3_3:10764536-10764555 | Msa0441970:CDS | 35.0% |
| CCTTAAAACCTAATCTTGAC+TGG | + | chr3_3:10764607-10764626 | None:intergenic | 35.0% | |
| ! | CCAGTCAAGATTAGGTTTTA+AGG | - | chr3_3:10764604-10764623 | Msa0441970:intron | 35.0% |
| CTGAGTAATGAGAGGAAATA+TGG | - | chr3_3:10764824-10764843 | Msa0441970:five_prime_UTR | 35.0% | |
| TGAATCCGTGATAATTGAGA+AGG | - | chr3_3:10764865-10764884 | Msa0441970:five_prime_UTR | 35.0% | |
| TGGTCTCTTTACAACAGAGA+AGG | - | chr3_3:10762057-10762076 | Msa0441970:three_prime_UTR | 40.0% | |
| !!! | GAAGGTTTTGTTCCATTGCT+CGG | - | chr3_3:10762075-10762094 | Msa0441970:three_prime_UTR | 40.0% |
| CGCGTTAATCTTCAGTTTCA+AGG | - | chr3_3:10762132-10762151 | Msa0441970:three_prime_UTR | 40.0% | |
| TAGAACCCTAACCATGAAAC+AGG | - | chr3_3:10762360-10762379 | Msa0441970:three_prime_UTR | 40.0% | |
| CTTGTACCTGTTTCATGGTT+AGG | + | chr3_3:10762369-10762388 | None:intergenic | 40.0% | |
| CACACAATGTGCCAATATTC+GGG | + | chr3_3:10762480-10762499 | None:intergenic | 40.0% | |
| TGAAAAGCTTATTCAGGTCG+CGG | - | chr3_3:10762498-10762517 | Msa0441970:intron | 40.0% | |
| ! | TCTCTAAAGGTGAAGAGGAA+GGG | - | chr3_3:10762554-10762573 | Msa0441970:intron | 40.0% |
| GATAGGTATGGTGAACAAAG+AGG | + | chr3_3:10762603-10762622 | None:intergenic | 40.0% | |
| TACCACGTTTACGATAGGTA+TGG | + | chr3_3:10762615-10762634 | None:intergenic | 40.0% | |
| ! | AACCTGTTCCATGGTGTTTT+CGG | + | chr3_3:10762662-10762681 | None:intergenic | 40.0% |
| AAAACACCATGGAACAGGTT+AGG | - | chr3_3:10762662-10762681 | Msa0441970:intron | 40.0% | |
| AACAAACCTAACCTGTTCCA+TGG | + | chr3_3:10762671-10762690 | None:intergenic | 40.0% | |
| ! | TGGAATAGGTTTGTCACTTG+TGG | - | chr3_3:10762718-10762737 | Msa0441970:intron | 40.0% |
| ! | GGAATAGGTTTGTCACTTGT+GGG | - | chr3_3:10762719-10762738 | Msa0441970:intron | 40.0% |
| ! | TGTGGTATAGGCCTTTTAAC+TGG | - | chr3_3:10762755-10762774 | Msa0441970:intron | 40.0% |
| GTTAGGTATGAAGCTTGGTT+GGG | - | chr3_3:10762801-10762820 | Msa0441970:intron | 40.0% | |
| ! | TTGGTTGGGTTGTTTCGTTA+GGG | - | chr3_3:10762815-10762834 | Msa0441970:intron | 40.0% |
| ! | GAAAACCCGTGATGATTTTC+TGG | - | chr3_3:10762899-10762918 | Msa0441970:intron | 40.0% |
| TGGTAGAATCTGAGTTCACT+AGG | - | chr3_3:10762919-10762938 | Msa0441970:intron | 40.0% | |
| TATTCCTGGAAGTGGTTCTT+CGG | - | chr3_3:10762956-10762975 | Msa0441970:intron | 40.0% | |
| AAAGGGAGTGGCAATGATTA+GGG | + | chr3_3:10762988-10763007 | None:intergenic | 40.0% | |
| AAAAGGGAGTGGCAATGATT+AGG | + | chr3_3:10762989-10763008 | None:intergenic | 40.0% | |
| AAACACTTCCCACAGAGAAT+TGG | + | chr3_3:10763028-10763047 | None:intergenic | 40.0% | |
| !!! | TTCTCTGTGGGAAGTGTTTT+TGG | - | chr3_3:10763029-10763048 | Msa0441970:intron | 40.0% |
| !! | TTTCCGTAGTTAGTCTTGTC+TGG | - | chr3_3:10763112-10763131 | Msa0441970:intron | 40.0% |
| !! | TTCCGTAGTTAGTCTTGTCT+GGG | - | chr3_3:10763113-10763132 | Msa0441970:intron | 40.0% |
| ! | GTCCTCCGAGATTTTTCTTT+TGG | - | chr3_3:10763146-10763165 | Msa0441970:intron | 40.0% |
| TTACACACTTCATGAGGTGA+AGG | - | chr3_3:10763365-10763384 | Msa0441970:intron | 40.0% | |
| !!! | GGCCAAGTATTTTGATGATG+AGG | - | chr3_3:10763386-10763405 | Msa0441970:intron | 40.0% |
| GTCTTGAGGAAGATACTCAA+TGG | - | chr3_3:10763420-10763439 | Msa0441970:intron | 40.0% | |
| TATGTGCAGTTTAGCTGTGT+AGG | - | chr3_3:10763747-10763766 | Msa0441970:intron | 40.0% | |
| ATGTGCAGTTTAGCTGTGTA+GGG | - | chr3_3:10763748-10763767 | Msa0441970:intron | 40.0% | |
| ! | CAAACCCAAGGAAGCATAAA+AGG | + | chr3_3:10764143-10764162 | None:intergenic | 40.0% |
| !! | CTTCCTTGGGTTTGTTTTTC+TGG | - | chr3_3:10764149-10764168 | Msa0441970:intron | 40.0% |
| GTACCAGAAAAACAAACCCA+AGG | + | chr3_3:10764155-10764174 | None:intergenic | 40.0% | |
| TTCTGGTACTCTGCACTTAT+TGG | - | chr3_3:10764166-10764185 | Msa0441970:intron | 40.0% | |
| GTTGGACTTAGACTAACACT+TGG | - | chr3_3:10764379-10764398 | Msa0441970:CDS | 40.0% | |
| ACTTGGAGTAAAAAGTCCTG+AGG | - | chr3_3:10764396-10764415 | Msa0441970:CDS | 40.0% | |
| ! | TTCAGTTTCAGGTGTCAAAC+AGG | - | chr3_3:10764547-10764566 | Msa0441970:CDS | 40.0% |
| !!! | GGTATCTTTTAAAGTAGGGG+TGG | - | chr3_3:10764662-10764681 | Msa0441970:intron | 40.0% |
| CTCAATTATCACGGATTCAC+AGG | + | chr3_3:10764864-10764883 | None:intergenic | 40.0% | |
| CTTGTTACTCGCCCGAATAT+TGG | - | chr3_3:10762466-10762485 | Msa0441970:intron | 45.0% | |
| GTTGCTTACCTCCTCTCTAA+AGG | - | chr3_3:10762541-10762560 | Msa0441970:intron | 45.0% | |
| ! | CTTCCTCTTCACCTTTAGAG+AGG | + | chr3_3:10762555-10762574 | None:intergenic | 45.0% |
| ! | CTCTCTAAAGGTGAAGAGGA+AGG | - | chr3_3:10762553-10762572 | Msa0441970:intron | 45.0% |
| AAAGGTGAAGAGGAAGGGAA+TGG | - | chr3_3:10762559-10762578 | Msa0441970:intron | 45.0% | |
| CACCATACCTATCGTAAACG+TGG | - | chr3_3:10762610-10762629 | Msa0441970:intron | 45.0% | |
| AGCGATACCACGTTTACGAT+AGG | + | chr3_3:10762620-10762639 | None:intergenic | 45.0% | |
| !! | TCACTTGTGGGTTAGCGTAT+AGG | - | chr3_3:10762731-10762750 | Msa0441970:intron | 45.0% |
| !! | CACTTGTGGGTTAGCGTATA+GGG | - | chr3_3:10762732-10762751 | Msa0441970:intron | 45.0% |
| TAGCGTATAGGGTGTGGTAT+AGG | - | chr3_3:10762743-10762762 | Msa0441970:intron | 45.0% | |
| GGTTAGGTATGAAGCTTGGT+TGG | - | chr3_3:10762800-10762819 | Msa0441970:intron | 45.0% | |
| ! | CTTGGTTGGGTTGTTTCGTT+AGG | - | chr3_3:10762814-10762833 | Msa0441970:intron | 45.0% |
| ! | TGGTTGGGTTGTTTCGTTAG+GGG | - | chr3_3:10762816-10762835 | Msa0441970:intron | 45.0% |
| GAATCTGAGTTCACTAGGCT+AGG | - | chr3_3:10762924-10762943 | Msa0441970:intron | 45.0% | |
| !! | ATTGCCACTCCCTTTTTGAG+TGG | - | chr3_3:10762993-10763012 | Msa0441970:intron | 45.0% |
| !!! | TTGCCACTCCCTTTTTGAGT+GGG | - | chr3_3:10762994-10763013 | Msa0441970:intron | 45.0% |
| TTTCGCCTCCCACTCAAAAA+GGG | + | chr3_3:10763005-10763024 | None:intergenic | 45.0% | |
| AGGCGAAACCAATTCTCTGT+GGG | - | chr3_3:10763017-10763036 | Msa0441970:intron | 45.0% | |
| !! | TCCGTAGTTAGTCTTGTCTG+GGG | - | chr3_3:10763114-10763133 | Msa0441970:intron | 45.0% |
| TCCCCAGACAAGACTAACTA+CGG | + | chr3_3:10763118-10763137 | None:intergenic | 45.0% | |
| TGTTTCCTAATCTTGGGGTG+CGG | - | chr3_3:10763175-10763194 | Msa0441970:intron | 45.0% | |
| AAAATCCGCACCCCAAGATT+AGG | + | chr3_3:10763183-10763202 | None:intergenic | 45.0% | |
| !! | GATGGGTTACACACTTCATG+AGG | - | chr3_3:10763359-10763378 | Msa0441970:intron | 45.0% |
| ATTAAAGCTGGACCAGACAG+AGG | + | chr3_3:10764120-10764139 | None:intergenic | 45.0% | |
| ATCGAGGATTCAGATTAGGG+TGG | - | chr3_3:10764350-10764369 | Msa0441970:CDS | 45.0% | |
| TCGAGGATTCAGATTAGGGT+GGG | - | chr3_3:10764351-10764370 | Msa0441970:CDS | 45.0% | |
| !! | AGATTAGGGTGGGGTTTTGT+TGG | - | chr3_3:10764361-10764380 | Msa0441970:CDS | 45.0% |
| AGTCCTGAGGATCATAGCTA+TGG | - | chr3_3:10764409-10764428 | Msa0441970:CDS | 45.0% | |
| TCAAACAGGAATTCTCCTGC+AGG | - | chr3_3:10764561-10764580 | Msa0441970:intron | 45.0% | |
| ! | TAATCTTGACTGGCCGAAGA+AGG | + | chr3_3:10764597-10764616 | None:intergenic | 45.0% |
| TTCTTCGGCCAGTCAAGATT+AGG | - | chr3_3:10764596-10764615 | Msa0441970:intron | 45.0% | |
| !! | AGTGAGTGCTGAGTAATGAG+AGG | - | chr3_3:10764816-10764835 | Msa0441970:five_prime_UTR | 45.0% |
| ACTGAAGATTAACGCGGCAG+CGG | + | chr3_3:10762128-10762147 | None:intergenic | 50.0% | |
| ! | CCTCTTCACCTTTAGAGAGG+AGG | + | chr3_3:10762552-10762571 | None:intergenic | 50.0% |
| ! | CCTCCTCTCTAAAGGTGAAG+AGG | - | chr3_3:10762549-10762568 | Msa0441970:intron | 50.0% |
| CGTAAACGTGGTATCGCTAC+TGG | - | chr3_3:10762622-10762641 | Msa0441970:intron | 50.0% | |
| ! | CTGTTCCATGGTGTTTTCGG+CGG | + | chr3_3:10762659-10762678 | None:intergenic | 50.0% |
| ! | TTGGGTTGTTTCGTTAGGGG+TGG | - | chr3_3:10762819-10762838 | Msa0441970:intron | 50.0% |
| ! | TGGGTTGTTTCGTTAGGGGT+GGG | - | chr3_3:10762820-10762839 | Msa0441970:intron | 50.0% |
| TTGTTTCGTTAGGGGTGGGA+AGG | - | chr3_3:10762824-10762843 | Msa0441970:intron | 50.0% | |
| TTCACCGAAGAACCACTTCC+AGG | + | chr3_3:10762963-10762982 | None:intergenic | 50.0% | |
| GTTTCGCCTCCCACTCAAAA+AGG | + | chr3_3:10763006-10763025 | None:intergenic | 50.0% | |
| GAGGCGAAACCAATTCTCTG+TGG | - | chr3_3:10763016-10763035 | Msa0441970:intron | 50.0% | |
| ! | TTGGGGTGCGGATTTTCTCT+AGG | - | chr3_3:10763187-10763206 | Msa0441970:intron | 50.0% |
| AAGAGCAACTCTGCAGCTCT+TGG | - | chr3_3:10763324-10763343 | Msa0441970:intron | 50.0% | |
| AGGAGGACGCTATTGTCTTG+AGG | - | chr3_3:10763406-10763425 | Msa0441970:intron | 50.0% | |
| TGGAAAAAGATGGGGGGAGT+GGG | + | chr3_3:10763473-10763492 | None:intergenic | 50.0% | |
| ATGGAAAAAGATGGGGGGAG+TGG | + | chr3_3:10763474-10763493 | None:intergenic | 50.0% | |
| TGCAGTTTAGCTGTGTAGGG+TGG | - | chr3_3:10763751-10763770 | Msa0441970:intron | 50.0% | |
| GCAGTTTAGCTGTGTAGGGT+GGG | - | chr3_3:10763752-10763771 | Msa0441970:intron | 50.0% | |
| CTGTTCATTGTGCCTCTGTC+TGG | - | chr3_3:10764105-10764124 | Msa0441970:intron | 50.0% | |
| CGAGGATTCAGATTAGGGTG+GGG | - | chr3_3:10764352-10764371 | Msa0441970:CDS | 50.0% | |
| AGGCCATAGCTATGATCCTC+AGG | + | chr3_3:10764415-10764434 | None:intergenic | 50.0% | |
| AACAGGAATTCTCCTGCAGG+AGG | - | chr3_3:10764564-10764583 | Msa0441970:intron | 50.0% | |
| AGGAGGAGGAAGACCTTCTT+CGG | - | chr3_3:10764581-10764600 | Msa0441970:intron | 50.0% | |
| AGATTAACGCGGCAGCGGTA+TGG | + | chr3_3:10762123-10762142 | None:intergenic | 55.0% | |
| ! | TTCCATGGTGTTTTCGGCGG+CGG | + | chr3_3:10762656-10762675 | None:intergenic | 55.0% |
| CGCCGAAAACACCATGGAAC+AGG | - | chr3_3:10762657-10762676 | Msa0441970:intron | 55.0% | |
| !! | GTGGGTTAGCGTATAGGGTG+TGG | - | chr3_3:10762737-10762756 | Msa0441970:intron | 55.0% |
| CCTCCCACTCAAAAAGGGAG+TGG | + | chr3_3:10763000-10763019 | None:intergenic | 55.0% | |
| !!! | CCACTCCCTTTTTGAGTGGG+AGG | - | chr3_3:10762997-10763016 | Msa0441970:intron | 55.0% |
| AAGACGTCTCAGTGCACGTC+CGG | - | chr3_3:10763301-10763320 | Msa0441970:intron | 55.0% | |
| GAGCTGCAGAGTTGCTCTTC+CGG | + | chr3_3:10763323-10763342 | None:intergenic | 55.0% | |
| GAGTGGGTCTCACAGTTAGG+TGG | + | chr3_3:10763457-10763476 | None:intergenic | 55.0% | |
| AGGAATTCTCCTGCAGGAGG+AGG | - | chr3_3:10764567-10764586 | Msa0441970:intron | 55.0% | |
| CAGCGGTATGGTCTCCGACA+CGG | + | chr3_3:10762111-10762130 | None:intergenic | 60.0% | |
| AACCGCCGCCGAAAACACCA+TGG | - | chr3_3:10762651-10762670 | Msa0441970:intron | 60.0% | |
| TAGGGGTGGGAAGGCAGAGT+AGG | - | chr3_3:10762833-10762852 | Msa0441970:intron | 60.0% | |
| GTGGGAAGGCAGAGTAGGCT+AGG | - | chr3_3:10762838-10762857 | Msa0441970:intron | 60.0% | |
| !! | GTCTTGTCTGGGGAGCGTTC+TGG | - | chr3_3:10763124-10763143 | Msa0441970:intron | 60.0% |
| GGGGAGTGGGTCTCACAGTT+AGG | + | chr3_3:10763460-10763479 | None:intergenic | 60.0% | |
| ! | GTGGGCGCGAGGTCAGATTT+TGG | - | chr3_3:10763770-10763789 | Msa0441970:intron | 60.0% |
| GAAGGTCTTCCTCCTCCTGC+AGG | + | chr3_3:10764579-10764598 | None:intergenic | 60.0% | |
| ! | GGTGGCTCTGCTCCGAGCAA+TGG | + | chr3_3:10762090-10762109 | None:intergenic | 65.0% |
| TCGGAGCAGAGCCACCGTGT+CGG | - | chr3_3:10762094-10762113 | Msa0441970:three_prime_UTR | 65.0% | |
| CGGTATGGTCTCCGACACGG+TGG | + | chr3_3:10762108-10762127 | None:intergenic | 65.0% | |
| CAGGTCGCGGACGATTGCAG+CGG | - | chr3_3:10762511-10762530 | Msa0441970:intron | 65.0% | |
| AGCTGTGTAGGGTGGGCGCG+AGG | - | chr3_3:10763759-10763778 | Msa0441970:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 10762047 | 10764914 | 10762047 | ID=Msa0441970;Name=Msa0441970 |
| chr3_3 | mRNA | 10762047 | 10764914 | 10762047 | ID=Msa0441970-mRNA-1;Parent=Msa0441970;Name=Msa0441970-mRNA-1;_AED=0.09;_eAED=0.09;_QI=120|1|1|1|0.25|0|5|337|151 |
| chr3_3 | exon | 10762047 | 10762321 | 10762047 | ID=Msa0441970-mRNA-1:exon:2333;Parent=Msa0441970-mRNA-1 |
| chr3_3 | exon | 10762344 | 10762403 | 10762344 | ID=Msa0441970-mRNA-1:exon:2332;Parent=Msa0441970-mRNA-1 |
| chr3_3 | exon | 10763498 | 10763670 | 10763498 | ID=Msa0441970-mRNA-1:exon:2331;Parent=Msa0441970-mRNA-1 |
| chr3_3 | exon | 10764283 | 10764579 | 10764283 | ID=Msa0441970-mRNA-1:exon:2330;Parent=Msa0441970-mRNA-1 |
| chr3_3 | exon | 10764807 | 10764914 | 10764807 | ID=Msa0441970-mRNA-1:exon:2329;Parent=Msa0441970-mRNA-1 |
| chr3_3 | five_prime_UTR | 10764807 | 10764914 | 10764807 | ID=Msa0441970-mRNA-1:five_prime_utr;Parent=Msa0441970-mRNA-1 |
| chr3_3 | five_prime_UTR | 10764568 | 10764579 | 10764568 | ID=Msa0441970-mRNA-1:five_prime_utr;Parent=Msa0441970-mRNA-1 |
| chr3_3 | CDS | 10764283 | 10764567 | 10764283 | ID=Msa0441970-mRNA-1:cds;Parent=Msa0441970-mRNA-1 |
| chr3_3 | CDS | 10763500 | 10763670 | 10763500 | ID=Msa0441970-mRNA-1:cds;Parent=Msa0441970-mRNA-1 |
| chr3_3 | three_prime_UTR | 10763498 | 10763499 | 10763498 | ID=Msa0441970-mRNA-1:three_prime_utr;Parent=Msa0441970-mRNA-1 |
| chr3_3 | three_prime_UTR | 10762344 | 10762403 | 10762344 | ID=Msa0441970-mRNA-1:three_prime_utr;Parent=Msa0441970-mRNA-1 |
| chr3_3 | three_prime_UTR | 10762047 | 10762321 | 10762047 | ID=Msa0441970-mRNA-1:three_prime_utr;Parent=Msa0441970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
