AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0442140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0442140 MtrunA17_Chr3g0080101 98.753 802 10 0 1 802 1 802 0.0 1634
Msa0442140 MtrunA17_Chr7g0266031 50.794 882 348 19 1 802 1 876 0.0 741
Msa0442140 MtrunA17_Chr1g0179101 69.892 465 132 5 342 802 399 859 0.0 666
Msa0442140 MtrunA17_Chr2g0290691 58.650 474 182 6 342 802 132 604 0.0 569
Msa0442140 MtrunA17_Chr7g0250631 62.785 395 133 5 379 769 331 715 1.81e-178 531
Msa0442140 MtrunA17_Chr7g0227331 61.485 431 157 5 345 769 163 590 5.29e-178 525
Msa0442140 MtrunA17_Chr6g0449401 54.959 484 159 8 337 769 176 651 2.69e-176 523
Msa0442140 MtrunA17_Chr8g0335351 63.613 393 130 5 379 767 337 720 7.03e-175 522
Msa0442140 MtrunA17_Chr2g0309421 56.236 441 170 8 354 787 116 540 1.99e-159 475
Msa0442140 MtrunA17_Chr8g0356291 51.173 469 195 9 356 802 68 524 2.96e-153 458
Msa0442140 MtrunA17_Chr4g0063311 50.627 399 176 8 387 768 63 457 2.33e-134 408
Msa0442140 MtrunA17_Chr2g0321101 53.050 377 152 6 398 761 70 434 1.66e-129 394
Msa0442140 MtrunA17_Chr8g0381091 49.367 395 161 10 390 768 52 423 8.56e-121 371
Msa0442140 MtrunA17_Chr2g0285711 47.980 396 168 9 390 771 57 428 6.04e-120 369
Msa0442140 MtrunA17_Chr2g0312641 46.005 413 176 10 370 767 39 419 2.13e-114 355
Msa0442140 MtrunA17_Chr2g0327561 46.032 378 165 2 390 767 601 939 1.67e-107 352
Msa0442140 MtrunA17_Chr4g0030361 44.180 378 161 3 390 767 282 609 7.70e-105 336
Msa0442140 MtrunA17_Chr8g0369091 44.709 378 162 3 390 767 572 902 1.53e-103 340
Msa0442140 MtrunA17_Chr4g0032761 38.060 402 211 11 412 792 10 394 3.86e-76 253
Msa0442140 MtrunA17_Chr2g0329011 38.692 367 184 7 411 774 11 339 1.56e-75 250
Msa0442140 MtrunA17_Chr8g0338741 38.043 368 196 11 412 768 15 361 4.39e-70 237
Msa0442140 MtrunA17_Chr7g0234641 35.389 373 207 9 409 769 3 353 5.39e-67 228
Msa0442140 MtrunA17_Chr5g0428981 34.302 344 178 5 414 756 760 1056 2.71e-55 206
Msa0442140 MtrunA17_Chr4g0018201 34.012 344 179 5 414 756 756 1052 3.36e-55 206
Msa0442140 MtrunA17_Chr6g0478601 35.191 341 174 6 417 756 111 405 3.52e-54 196
Msa0442140 MtrunA17_Chr3g0135951 32.081 346 196 9 417 756 94 406 1.52e-46 174
Msa0442140 MtrunA17_Chr1g0153321 29.805 359 210 7 405 759 96 416 2.18e-44 168
Msa0442140 MtrunA17_Chr1g0187581 30.238 420 229 14 359 767 69 435 8.52e-42 160
Msa0442140 MtrunA17_Chr1g0183651 29.459 370 221 6 405 772 108 439 6.09e-41 158
Msa0442140 MtrunA17_Chr2g0299781 30.814 344 203 8 417 756 113 425 2.03e-40 156
Msa0442140 MtrunA17_Chr1g0167351 27.409 467 287 12 320 772 3 431 2.28e-40 156
Msa0442140 MtrunA17_Chr7g0261491 30.000 360 204 9 405 756 108 427 1.41e-39 155
Msa0442140 MtrunA17_Chr1g0167311 29.189 370 223 9 405 772 103 435 4.67e-39 152
Msa0442140 MtrunA17_Chr1g0197721 37.791 172 97 3 401 572 38 199 9.95e-28 118
Msa0442140 MtrunA17_Chr1g0197721 35.099 151 92 3 638 784 203 351 1.77e-13 73.9
Msa0442140 MtrunA17_Chr7g0245031 37.500 168 95 4 404 564 129 293 1.65e-26 114
Msa0442140 MtrunA17_Chr7g0245031 45.238 126 64 3 647 771 301 422 2.09e-23 104
Msa0442140 MtrunA17_Chr4g0059751 39.241 158 81 5 417 564 89 241 4.58e-26 112
Msa0442140 MtrunA17_Chr4g0059751 40.000 140 73 4 647 785 249 378 1.91e-23 103
Msa0442140 MtrunA17_Chr3g0125381 44.144 111 58 1 642 752 101 207 2.12e-24 102
Msa0442140 MtrunA17_Chr3g0125381 32.231 121 69 2 467 587 2 109 1.38e-11 65.1
Msa0442140 MtrunA17_Chr8g0351491 27.666 347 168 9 406 752 5 268 1.75e-22 98.2
Msa0442140 MtrunA17_Chr3g0140631 33.523 176 115 1 390 565 10 183 9.38e-21 93.6
Msa0442140 MtrunA17_Chr8g0379091 25.784 287 137 5 411 696 20 231 1.46e-19 93.2
Msa0442140 MtrunA17_Chr2g0284031 25.784 287 137 5 406 691 20 231 5.38e-19 91.3
Msa0442140 MtrunA17_Chr1g0205421 35.625 160 96 3 407 564 2 156 8.61e-19 90.1
Msa0442140 MtrunA17_Chr4g0013131 30.380 158 107 1 407 564 2 156 2.03e-18 89.0
Msa0442140 MtrunA17_Chr8g0353621 41.346 104 57 1 647 750 161 260 7.75e-18 84.3
Msa0442140 MtrunA17_Chr8g0353621 33.333 150 98 1 417 566 10 157 1.43e-17 83.6
Msa0442140 MtrunA17_Chr3g0107011 30.519 154 104 1 411 564 8 158 1.25e-17 86.7
Msa0442140 MtrunA17_Chr3g0114511 32.258 155 100 1 410 564 25 174 2.18e-17 85.9
Msa0442140 MtrunA17_Chr7g0244521 30.968 155 104 1 410 564 5 156 4.66e-17 84.7
Msa0442140 MtrunA17_Chr2g0304111 29.319 191 108 3 376 564 3 168 2.11e-16 82.8
Msa0442140 MtrunA17_Chr2g0286501 35.065 154 90 3 414 566 46 190 2.16e-16 84.3
Msa0442140 MtrunA17_Chr4g0074111 31.293 147 98 1 417 563 18 161 5.58e-16 80.9
Msa0442140 MtrunA17_Chr1g0188031 32.075 159 92 4 414 564 17 167 5.70e-16 81.3
Msa0442140 MtrunA17_Chr3g0107051 33.108 148 96 1 417 564 21 165 5.92e-16 81.3
Msa0442140 MtrunA17_Chr2g0302431 30.719 153 104 1 412 564 15 165 7.88e-16 80.9
Msa0442140 MtrunA17_Chr5g0432471 28.947 152 103 2 414 564 9 156 2.06e-15 79.7
Msa0442140 MtrunA17_Chr2g0284011 28.387 155 108 1 410 564 5 156 2.71e-15 79.3
Msa0442140 MtrunA17_Chr4g0001331 29.114 158 109 1 407 564 10 164 3.04e-15 79.3
Msa0442140 MtrunA17_Chr1g0150321 30.625 160 108 1 405 564 1 157 6.49e-15 77.8
Msa0442140 MtrunA17_Chr6g0453681 30.818 159 102 3 410 564 10 164 6.70e-15 78.2
Msa0442140 MtrunA17_Chr6g0486661 34.109 129 77 4 644 767 909 1034 7.53e-15 79.0
Msa0442140 MtrunA17_Chr6g0468751 30.818 159 102 3 410 564 10 164 9.18e-15 77.8
Msa0442140 MtrunA17_Chr3g0132591 38.776 147 80 3 423 568 118 255 1.41e-14 77.0
Msa0442140 MtrunA17_Chr3g0091311 32.075 159 97 4 410 564 5 156 1.57e-14 74.3
Msa0442140 MtrunA17_Chr5g0428031 27.703 148 105 1 417 564 9 154 2.26e-14 76.3
Msa0442140 MtrunA17_Chr7g0272841 32.653 147 92 3 423 564 74 218 2.71e-14 77.0
Msa0442140 MtrunA17_Chr5g0419441 31.373 153 100 3 417 568 239 387 4.03e-14 76.6
Msa0442140 MtrunA17_Chr5g0441011 29.054 148 103 1 417 564 13 158 4.18e-14 75.5
Msa0442140 MtrunA17_Chr8g0386981 32.639 144 93 2 423 564 414 555 4.66e-14 76.3
Msa0442140 MtrunA17_Chr8g0346071 27.703 148 105 1 417 564 17 162 4.76e-14 75.1
Msa0442140 MtrunA17_Chr1g0202831 30.556 144 96 2 423 564 417 558 8.06e-14 75.5
Msa0442140 MtrunA17_Chr8g0346081 26.351 148 107 1 417 564 17 162 1.07e-13 74.3
Msa0442140 MtrunA17_Chr4g0061141 32.749 171 106 5 399 564 85 251 1.93e-13 74.3
Msa0442140 MtrunA17_Chr8g0385341 33.987 153 95 3 417 565 30 180 2.25e-13 73.6
Msa0442140 MtrunA17_Chr1g0200601 34.839 155 93 4 416 565 29 180 2.64e-13 73.2
Msa0442140 MtrunA17_Chr3g0130151 32.192 146 91 3 423 564 250 391 4.35e-13 72.8
Msa0442140 MtrunA17_Chr3g0091281 30.220 182 105 6 410 576 5 179 4.36e-13 69.7
Msa0442140 MtrunA17_Chr1g0188991 23.611 360 184 12 413 767 11 284 4.59e-13 73.2
Msa0442140 MtrunA17_Chr1g0176751 34.746 118 64 4 649 764 283 389 5.59e-13 72.4
Msa0442140 MtrunA17_Chr3g0132671 29.787 188 96 5 410 564 10 194 6.37e-13 72.0
Msa0442140 MtrunA17_Chr1g0205931 32.000 150 95 3 423 567 61 208 6.41e-13 72.4
Msa0442140 MtrunA17_Chr1g0166101 28.947 152 105 2 414 564 21 170 6.83e-13 71.6
Msa0442140 MtrunA17_Chr2g0333821 28.931 159 110 1 406 564 3 158 1.05e-12 71.2
Msa0442140 MtrunA17_Chr5g0432491 31.081 148 100 1 417 564 23 168 1.19e-12 70.9
Msa0442140 MtrunA17_Chr8g0384301 31.613 155 100 4 413 564 295 446 2.05e-12 70.9
Msa0442140 MtrunA17_Chr6g0450571 30.968 155 101 4 412 564 11 161 2.58e-12 70.5
Msa0442140 MtrunA17_Chr7g0274941 34.579 107 63 3 647 750 171 273 2.92e-12 68.2
Msa0442140 MtrunA17_Chr7g0274941 28.947 152 103 3 412 561 11 159 3.90e-11 65.1
Msa0442140 MtrunA17_Chr8g0345801 31.783 129 85 2 422 550 20 145 5.32e-12 67.0
Msa0442140 MtrunA17_Chr4g0038501 27.632 152 109 1 417 568 20 170 5.40e-12 70.1
Msa0442140 MtrunA17_Chr4g0063881 28.472 144 101 1 421 564 15 156 5.54e-12 68.9
Msa0442140 MtrunA17_Chr5g0409421 27.500 160 107 4 414 571 1 153 6.22e-12 68.6
Msa0442140 MtrunA17_Chr2g0330211 30.201 149 101 2 417 564 18 164 8.89e-12 68.6
Msa0442140 MtrunA17_Chr2g0321841 27.922 154 105 3 414 564 1 151 9.89e-12 68.9
Msa0442140 MtrunA17_Chr3g0091421 29.375 160 102 4 409 564 4 156 1.03e-11 65.9
Msa0442140 MtrunA17_Chr4g0040141 32.667 150 96 4 417 564 129 275 1.06e-11 68.6
Msa0442140 MtrunA17_Chr2g0299991 27.670 206 140 5 360 564 17 214 1.09e-11 67.4
Msa0442140 MtrunA17_Chr7g0218071 31.250 176 114 5 399 570 100 272 1.20e-11 68.6
Msa0442140 MtrunA17_Chr3g0131861 31.788 151 96 5 417 564 97 243 1.39e-11 67.8
Msa0442140 MtrunA17_Chr1g0190831 27.273 154 106 3 414 564 1 151 1.43e-11 68.2
Msa0442140 MtrunA17_Chr1g0170551 32.075 106 66 2 650 755 162 261 1.49e-11 68.6
Msa0442140 MtrunA17_Chr6g0453711 29.379 177 116 6 399 570 90 262 1.59e-11 67.8
Msa0442140 MtrunA17_Chr4g0047191 31.148 122 82 1 445 564 73 194 1.69e-11 66.6
Msa0442140 MtrunA17_Chr4g0038091 27.632 152 109 1 417 568 20 170 2.03e-11 68.2
Msa0442140 MtrunA17_Chr4g0047211 31.148 122 82 1 445 564 68 189 2.36e-11 66.2
Msa0442140 MtrunA17_Chr4g0000431 28.000 150 104 3 416 564 23 169 2.62e-11 67.4
Msa0442140 MtrunA17_Chr2g0317501 31.126 151 97 5 417 564 134 280 2.63e-11 67.4
Msa0442140 MtrunA17_Chr2g0317001 30.065 153 101 4 417 568 15 162 3.34e-11 67.0
Msa0442140 MtrunA17_Chr1g0170281 29.940 167 108 5 404 565 106 268 4.45e-11 66.2
Msa0442140 MtrunA17_Chr3g0091291 35.514 107 60 3 462 564 3 104 4.73e-11 63.2
Msa0442140 MtrunA17_Chr6g0453671 28.758 153 103 2 414 564 16 164 7.97e-11 64.7
Msa0442140 MtrunA17_Chr1g0162301 30.667 150 88 4 409 550 10 151 8.38e-11 64.7
Msa0442140 MtrunA17_Chr1g0173541 32.051 156 100 3 414 565 49 202 8.58e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0442140 AT3G52890.2 66.173 473 147 6 341 802 464 934 0.0 636
Msa0442140 AT3G52890.4 66.173 473 147 6 341 802 464 934 0.0 636
Msa0442140 AT3G52890.1 66.173 473 147 6 341 802 464 934 0.0 636
Msa0442140 AT3G52890.3 66.173 473 147 6 341 802 464 934 0.0 636
Msa0442140 AT2G36350.1 64.807 466 153 4 346 802 486 949 0.0 613
Msa0442140 AT2G36350.1 34.161 161 77 3 1 132 1 161 1.70e-14 78.2
Msa0442140 AT5G03640.2 57.326 546 192 10 282 802 397 926 0.0 595
Msa0442140 AT5G03640.1 57.326 546 192 10 282 802 397 926 0.0 595
Msa0442140 AT5G47750.1 61.135 458 165 6 356 802 131 586 0.0 558
Msa0442140 AT4G26610.1 58.197 488 185 10 290 773 6 478 0.0 542
Msa0442140 AT5G55910.2 58.225 462 186 6 346 802 39 498 0.0 528
Msa0442140 AT5G55910.1 58.225 462 186 6 346 802 39 498 0.0 528
Msa0442140 AT2G44830.2 54.581 513 195 11 279 769 219 715 3.85e-175 523
Msa0442140 AT2G44830.3 54.581 513 195 11 279 769 219 715 3.85e-175 523
Msa0442140 AT2G44830.1 54.581 513 195 11 279 769 219 715 3.85e-175 523
Msa0442140 AT3G27580.2 60.714 392 138 6 387 769 150 534 1.32e-166 494
Msa0442140 AT3G27580.1 60.714 392 138 6 387 769 150 534 1.32e-166 494
Msa0442140 AT3G12690.1 48.619 543 250 5 249 788 30 546 6.09e-166 493
Msa0442140 AT3G12690.3 48.619 543 250 5 249 788 30 546 6.09e-166 493
Msa0442140 AT3G12690.2 48.619 543 250 5 249 788 30 546 6.09e-166 493
Msa0442140 AT5G40030.1 61.979 384 134 8 390 769 86 461 3.27e-159 473
Msa0442140 AT1G79250.1 57.073 410 164 4 381 782 110 515 8.47e-159 473
Msa0442140 AT1G79250.3 57.073 410 164 4 381 782 110 515 8.47e-159 473
Msa0442140 AT1G79250.2 57.073 410 164 4 381 782 110 515 8.47e-159 473
Msa0442140 AT1G79250.4 57.073 410 164 4 381 782 110 515 8.47e-159 473
Msa0442140 AT1G16440.1 57.254 386 150 4 390 773 86 458 6.22e-150 449
Msa0442140 AT2G26700.1 44.643 448 199 7 369 769 38 483 1.73e-127 392
Msa0442140 AT2G34650.1 50.370 405 162 8 372 768 38 411 3.00e-127 388
Msa0442140 AT3G44610.1 53.973 365 136 7 417 761 71 423 6.89e-127 387
Msa0442140 AT5G58140.6 43.596 406 173 5 391 795 551 901 2.62e-108 353
Msa0442140 AT5G58140.7 43.596 406 173 5 391 795 551 901 2.62e-108 353
Msa0442140 AT5G58140.5 43.596 406 173 5 391 795 551 901 2.62e-108 353
Msa0442140 AT5G58140.2 43.596 406 173 5 391 795 551 901 2.62e-108 353
Msa0442140 AT5G58140.1 43.596 406 173 5 391 795 551 901 2.62e-108 353
Msa0442140 AT3G14370.1 46.094 384 165 6 392 766 61 411 5.93e-108 339
Msa0442140 AT5G58140.3 44.865 370 157 3 391 760 551 873 1.31e-105 345
Msa0442140 AT3G45780.2 41.439 403 183 4 390 792 636 985 5.73e-100 332
Msa0442140 AT3G45780.1 41.439 403 183 4 390 792 636 985 5.73e-100 332
Msa0442140 AT1G53700.1 44.619 381 176 7 392 767 66 416 7.12e-99 315
Msa0442140 AT1G51170.1 39.314 379 184 11 411 774 16 363 3.52e-75 250
Msa0442140 AT3G20830.1 39.153 378 186 11 412 774 16 364 3.04e-71 239
Msa0442140 AT4G13000.1 37.845 362 184 9 412 768 15 340 2.82e-70 236
Msa0442140 AT3G25250.1 33.753 397 224 6 406 793 6 372 2.42e-66 227
Msa0442140 AT1G45160.2 33.744 406 204 10 412 802 665 1020 2.04e-54 204
Msa0442140 AT5G62310.1 33.504 391 201 9 414 795 751 1091 2.27e-54 204
Msa0442140 AT1G45160.1 35.655 359 177 8 412 766 665 973 3.85e-54 203
Msa0442140 AT1G48490.4 34.971 346 172 6 412 756 824 1117 4.30e-53 200
Msa0442140 AT1G48490.3 34.971 346 172 6 412 756 823 1116 4.34e-53 200
Msa0442140 AT1G48490.2 34.971 346 172 6 412 756 823 1116 4.34e-53 200
Msa0442140 AT1G48490.1 34.971 346 172 6 412 756 823 1116 4.34e-53 200
Msa0442140 AT1G30640.3 31.565 377 213 11 402 771 12 350 1.09e-47 176
Msa0442140 AT1G30640.2 32.075 371 207 11 408 771 111 443 1.19e-47 178
Msa0442140 AT1G30640.1 32.075 371 207 11 408 771 111 443 1.19e-47 178
Msa0442140 AT5G09890.2 32.584 356 200 8 405 756 90 409 2.90e-47 176
Msa0442140 AT5G09890.1 32.584 356 200 8 405 756 90 409 2.99e-47 176
Msa0442140 AT4G14350.3 30.749 374 212 10 405 772 107 439 6.27e-43 164
Msa0442140 AT4G14350.2 30.749 374 212 10 405 772 107 439 7.63e-43 164
Msa0442140 AT4G14350.1 30.749 374 212 10 405 772 107 439 7.63e-43 164
Msa0442140 AT4G14350.4 30.749 374 212 10 405 772 107 439 7.63e-43 164
Msa0442140 AT1G03920.2 31.183 372 212 8 405 772 12 343 8.85e-43 162
Msa0442140 AT1G03920.1 31.117 376 207 9 405 772 125 456 1.02e-42 164
Msa0442140 AT1G03920.3 31.117 376 207 9 405 772 125 456 1.02e-42 164
Msa0442140 AT4G33080.1 29.609 358 214 9 405 756 82 407 1.81e-42 162
Msa0442140 AT4G33080.2 29.609 358 214 9 405 756 82 407 2.20e-42 162
Msa0442140 AT2G20470.3 30.352 369 212 8 408 772 115 442 2.71e-42 162
Msa0442140 AT2G20470.2 29.839 372 216 7 405 772 112 442 3.39e-42 162
Msa0442140 AT2G20470.1 29.839 372 216 7 405 772 112 442 3.39e-42 162
Msa0442140 AT3G23310.1 30.481 374 215 12 405 772 108 442 5.23e-41 159
Msa0442140 AT2G19400.1 31.594 345 201 9 417 756 105 419 2.02e-39 154
Msa0442140 AT5G58140.4 44.275 131 73 0 391 521 551 681 1.52e-31 132
Msa0442140 AT5G04510.3 36.979 192 108 3 381 572 14 192 5.64e-28 115
Msa0442140 AT5G04510.2 39.506 162 91 2 411 572 38 192 6.36e-28 117
Msa0442140 AT5G04510.2 35.821 134 80 3 638 767 196 327 2.90e-17 85.5
Msa0442140 AT5G04510.1 36.979 192 108 3 381 572 14 192 1.09e-27 118
Msa0442140 AT5G04510.1 35.821 134 80 3 638 767 196 327 2.70e-17 86.3
Msa0442140 AT3G08730.1 46.094 128 63 4 645 771 285 407 1.10e-27 117
Msa0442140 AT3G08730.1 39.103 156 91 3 410 564 127 279 1.78e-26 114
Msa0442140 AT3G08730.2 46.094 128 63 4 645 771 285 407 1.10e-27 117
Msa0442140 AT3G08730.2 39.103 156 91 3 410 564 127 279 1.78e-26 114
Msa0442140 AT3G10540.1 38.372 172 96 3 401 572 32 193 4.24e-27 116
Msa0442140 AT3G10540.1 36.567 134 79 3 638 767 197 328 9.18e-18 87.8
Msa0442140 AT3G17850.1 41.558 154 88 1 417 570 882 1033 4.98e-27 119
Msa0442140 AT3G17850.1 44.144 111 60 2 647 756 1067 1176 6.91e-23 105
Msa0442140 AT3G08720.1 39.103 156 91 3 410 564 133 285 7.37e-27 115
Msa0442140 AT3G08720.1 48.673 113 54 3 645 756 291 400 9.29e-26 112
Msa0442140 AT3G08720.3 39.103 156 91 3 410 564 133 285 7.37e-27 115
Msa0442140 AT3G08720.3 48.673 113 54 3 645 756 291 400 9.29e-26 112
Msa0442140 AT3G08720.4 39.103 156 91 3 410 564 133 285 7.37e-27 115
Msa0442140 AT3G08720.4 48.673 113 54 3 645 756 291 400 9.29e-26 112
Msa0442140 AT3G08720.2 39.103 156 91 3 410 564 133 285 7.37e-27 115
Msa0442140 AT3G08720.2 48.673 113 54 3 645 756 291 400 9.29e-26 112
Msa0442140 AT2G45490.1 45.045 111 56 3 641 751 168 273 1.64e-20 93.2
Msa0442140 AT2G45490.1 35.256 156 97 2 414 568 19 171 1.99e-19 90.1
Msa0442140 AT2G20050.2 40.870 115 64 2 647 759 931 1043 7.64e-20 95.9
Msa0442140 AT2G20050.1 40.870 115 64 2 647 759 934 1046 7.79e-20 95.9
Msa0442140 AT5G18700.1 37.748 151 86 3 414 564 1 143 9.13e-20 95.5
Msa0442140 AT2G45490.2 35.256 156 97 2 414 568 19 171 2.34e-19 89.0
Msa0442140 AT2G45490.2 43.182 88 49 1 641 728 168 254 5.16e-15 76.3
Msa0442140 AT5G45810.1 26.132 287 136 5 406 691 17 228 4.44e-19 91.7
Msa0442140 AT5G45820.1 32.484 157 103 1 408 564 3 156 9.90e-19 90.1
Msa0442140 AT4G18700.1 25.979 281 132 5 412 691 21 226 1.58e-18 90.1
Msa0442140 AT4G32830.1 26.562 320 156 8 417 736 31 271 3.24e-18 86.7
Msa0442140 AT2G25880.3 31.841 201 115 3 365 565 54 232 6.76e-18 86.7
Msa0442140 AT2G25880.3 39.252 107 61 1 644 750 234 336 1.14e-16 82.8
Msa0442140 AT2G25880.1 36.242 149 93 1 417 565 25 171 7.36e-18 85.5
Msa0442140 AT2G25880.1 38.889 108 62 1 644 751 173 276 4.04e-17 83.2
Msa0442140 AT2G25880.4 36.242 149 93 1 417 565 38 184 8.84e-18 85.5
Msa0442140 AT2G25880.4 39.252 107 61 1 644 750 186 288 3.51e-17 83.6
Msa0442140 AT1G12680.1 35.714 154 89 3 421 573 111 255 1.70e-17 86.7
Msa0442140 AT5G25110.1 30.818 159 107 1 406 564 32 187 1.88e-17 86.7
Msa0442140 AT2G25880.2 39.252 107 61 1 644 750 141 243 2.38e-17 83.2
Msa0442140 AT5G01810.1 31.013 158 106 1 407 564 2 156 3.57e-17 85.1
Msa0442140 AT5G01810.2 31.013 158 106 1 407 564 2 156 3.57e-17 85.1
Msa0442140 AT5G10930.1 34.000 150 93 4 417 564 12 157 3.79e-17 85.5
Msa0442140 AT1G29230.1 32.468 154 101 1 411 564 68 218 5.77e-17 85.5
Msa0442140 AT5G01810.3 31.013 158 106 1 407 564 2 156 5.84e-17 84.0
Msa0442140 AT2G25090.1 34.000 150 94 3 417 564 15 161 1.50e-16 84.0
Msa0442140 AT4G14580.1 32.051 156 103 2 410 564 14 167 1.95e-16 83.2
Msa0442140 AT1G54960.1 32.680 153 96 3 417 564 68 218 2.19e-16 84.0
Msa0442140 AT1G54960.2 32.680 153 96 3 417 564 68 218 2.19e-16 84.0
Msa0442140 AT3G17510.1 31.169 154 104 1 411 564 14 165 4.61e-16 82.0
Msa0442140 AT2G34180.1 30.120 166 113 1 400 565 40 202 4.98e-16 82.4
Msa0442140 AT4G24400.1 30.667 150 98 2 417 564 9 154 5.30e-16 82.0
Msa0442140 AT5G57630.2 29.936 157 103 2 410 564 5 156 6.61e-16 81.3
Msa0442140 AT5G57630.1 29.936 157 103 2 410 564 5 156 7.35e-16 81.3
Msa0442140 AT4G24400.2 30.667 150 98 2 417 564 9 154 8.18e-16 80.9
Msa0442140 AT2G30360.1 24.405 336 174 9 417 751 21 277 1.06e-15 80.9
Msa0442140 AT1G09000.1 32.680 153 96 3 417 564 69 219 1.21e-15 81.6
Msa0442140 AT1G09000.2 32.680 153 96 3 417 564 69 219 1.43e-15 81.3
Msa0442140 AT3G29160.3 32.026 153 98 2 414 564 17 165 1.90e-15 79.3
Msa0442140 AT3G23000.1 33.750 160 87 4 414 564 22 171 2.69e-15 79.7
Msa0442140 AT3G06030.1 34.014 147 90 3 423 564 74 218 3.18e-15 80.1
Msa0442140 AT3G29160.1 32.026 153 98 2 414 564 17 165 3.23e-15 79.7
Msa0442140 AT3G29160.2 32.026 153 98 2 414 564 17 165 3.23e-15 79.7
Msa0442140 AT3G01090.3 32.680 153 97 2 414 564 16 164 4.24e-15 79.3
Msa0442140 AT3G01090.1 32.680 153 97 2 414 564 16 164 4.24e-15 79.3
Msa0442140 AT3G01090.2 32.680 153 97 2 414 564 39 187 4.51e-15 79.3
Msa0442140 AT1G30270.1 29.054 148 103 1 417 564 31 176 1.06e-14 78.2
Msa0442140 AT2G26980.1 29.730 148 102 1 417 564 14 159 1.31e-14 77.0
Msa0442140 AT5G21326.1 23.313 326 163 7 417 736 13 257 1.36e-14 77.4
Msa0442140 AT2G26980.3 29.730 148 102 1 417 564 14 159 1.41e-14 77.4
Msa0442140 AT1G30270.2 29.054 148 103 1 417 564 31 176 1.57e-14 77.4
Msa0442140 AT2G26980.4 29.730 148 102 1 417 564 24 169 1.62e-14 77.4
Msa0442140 AT4G24100.1 24.042 287 144 8 406 691 22 235 2.65e-14 77.4
Msa0442140 AT4G24100.2 24.042 287 144 8 406 691 22 235 2.71e-14 77.4
Msa0442140 AT2G26980.5 29.730 148 102 1 417 564 14 159 3.10e-14 76.3
Msa0442140 AT1G35670.1 30.622 209 126 6 416 617 25 221 3.11e-14 76.6
Msa0442140 AT4G30960.1 33.108 148 96 1 417 564 24 168 3.16e-14 76.3
Msa0442140 AT4G24100.4 24.042 287 144 8 406 691 38 251 3.23e-14 77.0
Msa0442140 AT4G24100.3 24.042 287 144 8 406 691 38 251 3.51e-14 77.0
Msa0442140 AT2G26980.2 29.730 148 102 1 417 564 14 159 3.63e-14 73.9
Msa0442140 AT4G04720.2 32.484 157 96 4 415 565 78 230 3.72e-14 76.6
Msa0442140 AT4G04720.2 32.381 105 64 3 651 753 241 340 4.63e-11 66.6
Msa0442140 AT4G04720.1 32.484 157 96 4 415 565 78 230 3.72e-14 76.6
Msa0442140 AT4G04720.1 32.381 105 64 3 651 753 241 340 4.63e-11 66.6
Msa0442140 AT5G39440.1 31.373 153 99 2 414 564 16 164 3.79e-14 76.3
Msa0442140 AT1G69220.1 27.317 205 133 3 377 568 196 397 6.84e-14 76.3
Msa0442140 AT5G58380.1 29.861 144 98 1 421 564 16 156 1.05e-13 74.7
Msa0442140 AT2G41860.1 33.987 153 95 3 417 565 54 204 1.06e-13 75.1
Msa0442140 AT2G41860.2 33.987 153 95 3 417 565 54 204 1.12e-13 75.1
Msa0442140 AT4G09570.1 30.144 209 127 6 416 617 24 220 1.60e-13 74.3
Msa0442140 AT5G14720.1 32.258 155 99 4 412 564 11 161 1.63e-13 74.7
Msa0442140 AT5G14720.2 32.258 155 99 4 412 564 11 161 1.63e-13 74.7
Msa0442140 AT1G53570.7 33.103 145 91 4 423 564 220 361 1.80e-13 74.3
Msa0442140 AT1G53570.6 33.103 145 91 4 423 564 220 361 1.83e-13 74.3
Msa0442140 AT1G63700.1 31.507 146 96 2 421 564 404 547 1.89e-13 74.7
Msa0442140 AT1G63700.2 31.507 146 96 2 421 564 404 547 1.89e-13 74.7
Msa0442140 AT1G53570.1 33.103 145 91 4 423 564 220 361 1.97e-13 74.3
Msa0442140 AT1G53570.2 33.103 145 91 4 423 564 220 361 1.98e-13 74.3
Msa0442140 AT1G53570.3 33.103 145 91 4 423 564 220 361 1.98e-13 74.3
Msa0442140 AT1G53570.4 33.103 145 91 4 423 564 220 361 2.08e-13 74.3
Msa0442140 AT1G01140.3 28.571 168 113 2 397 564 4 164 3.56e-13 73.2
Msa0442140 AT1G01140.1 28.571 168 113 2 397 564 4 164 3.56e-13 73.2
Msa0442140 AT1G01140.2 28.571 168 113 2 397 564 4 164 3.96e-13 72.8
Msa0442140 AT1G48260.1 31.081 148 100 1 417 564 11 156 4.42e-13 72.8
Msa0442140 AT5G28290.1 28.289 152 107 2 414 564 1 151 4.94e-13 73.2
Msa0442140 AT5G28290.2 28.289 152 107 2 414 564 1 151 4.94e-13 73.2
Msa0442140 AT2G38490.1 33.333 159 96 5 417 571 28 180 4.98e-13 72.4
Msa0442140 AT5G28290.3 28.289 152 107 2 414 564 1 151 5.10e-13 73.2
Msa0442140 AT5G39420.1 32.941 170 107 5 399 564 85 251 6.04e-13 72.8
Msa0442140 AT1G70430.3 32.903 155 98 4 412 564 11 161 1.23e-12 72.0
Msa0442140 AT1G70430.4 32.903 155 98 4 412 564 11 161 1.24e-12 72.0
Msa0442140 AT3G04810.2 26.974 152 109 2 414 564 1 151 1.24e-12 72.0
Msa0442140 AT3G04810.1 26.974 152 109 2 414 564 1 151 1.24e-12 72.0
Msa0442140 AT3G04810.3 26.974 152 109 2 414 564 1 151 1.24e-12 72.0
Msa0442140 AT1G70430.1 32.903 155 98 4 412 564 11 161 1.33e-12 71.6
Msa0442140 AT5G35410.2 27.586 145 101 2 421 564 15 156 4.20e-12 69.3
Msa0442140 AT1G69220.2 30.625 160 105 3 409 568 217 370 4.71e-12 70.5
Msa0442140 AT1G32320.1 32.867 143 86 3 423 564 54 187 5.00e-12 68.2
Msa0442140 AT3G61960.2 31.298 131 83 3 422 550 15 140 5.74e-12 69.7
Msa0442140 AT3G61960.1 30.882 136 87 3 417 550 10 140 5.94e-12 69.7
Msa0442140 AT2G17290.1 32.335 167 106 5 409 571 76 239 7.24e-12 69.3
Msa0442140 AT2G17290.2 32.335 167 106 5 409 571 76 239 7.24e-12 69.3
Msa0442140 AT3G10660.2 30.851 188 112 8 389 565 156 336 7.69e-12 69.3
Msa0442140 AT3G10660.1 30.851 188 112 8 389 565 156 336 7.69e-12 69.3
Msa0442140 AT4G14480.1 30.519 154 104 2 412 564 10 161 8.32e-12 68.9
Msa0442140 AT1G50700.3 31.461 178 109 6 394 565 53 223 8.90e-12 68.9
Msa0442140 AT5G35410.1 27.586 145 101 2 421 564 15 156 9.68e-12 68.6
Msa0442140 AT4G35310.2 30.952 168 107 5 409 571 88 251 1.12e-11 68.6
Msa0442140 AT4G35310.1 30.952 168 107 5 409 571 88 251 1.12e-11 68.6
Msa0442140 AT1G53050.2 31.788 151 96 5 417 564 134 280 1.13e-11 68.9
Msa0442140 AT1G53050.1 31.788 151 96 5 417 564 134 280 1.13e-11 68.9
Msa0442140 AT1G50700.1 31.461 178 109 6 394 565 53 223 1.36e-11 68.2
Msa0442140 AT3G15220.1 31.169 154 100 4 416 568 14 162 1.54e-11 68.6
Msa0442140 AT3G07980.1 26.974 152 110 1 417 568 20 170 1.75e-11 68.6
Msa0442140 AT3G07980.2 26.974 152 110 1 417 568 20 170 1.88e-11 68.6
Msa0442140 AT1G50700.2 31.461 178 109 6 394 565 53 223 2.21e-11 67.8
Msa0442140 AT1G61950.1 33.548 155 94 5 417 565 98 249 2.40e-11 67.8
Msa0442140 AT5G01820.1 31.690 142 94 1 423 564 28 166 3.75e-11 66.6
Msa0442140 AT4G10010.2 32.895 152 93 6 417 564 156 302 3.76e-11 67.0
Msa0442140 AT4G21940.2 33.333 105 63 3 651 753 263 362 4.07e-11 67.0
Msa0442140 AT1G54510.4 26.623 154 107 3 414 564 1 151 4.09e-11 67.0
Msa0442140 AT1G54510.2 26.623 154 107 3 414 564 1 151 4.09e-11 67.0
Msa0442140 AT1G54510.1 26.623 154 107 3 414 564 1 151 4.09e-11 67.0
Msa0442140 AT1G54510.3 26.623 154 107 3 414 564 1 151 4.09e-11 67.0
Msa0442140 AT4G21940.3 33.333 105 63 3 651 753 263 362 4.19e-11 66.6
Msa0442140 AT1G08650.1 33.333 108 64 3 648 752 172 274 4.55e-11 65.1
Msa0442140 AT4G21940.1 33.333 105 63 3 651 753 263 362 4.62e-11 66.6
Msa0442140 AT2G17890.1 29.469 207 117 8 423 616 114 304 6.49e-11 66.2
Msa0442140 AT5G23580.1 33.121 157 99 3 416 568 21 175 7.53e-11 65.9
Msa0442140 AT1G73500.1 31.034 145 89 4 423 564 53 189 9.96e-11 64.3
Msa0442140 AT1G53165.1 30.675 163 104 5 407 568 8 162 9.99e-11 65.9

Find 197 sgRNAs with CRISPR-Local

Find 367 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCCCAAGTTTCGCGATTT+TGG 0.148878 3_3:+11433662 Msa0442140:CDS
GTCTAAAGTGCCTCAAATTT+AGG 0.249798 3_3:-11431321 None:intergenic
GTTTGTCCGTCTCAGGCTTC+TGG 0.251704 3_3:+11430317 Msa0442140:CDS
CCTTCTTTGAAGGCCTCAAC+TGG 0.257721 3_3:+11433609 Msa0442140:CDS
GTTTATCTTGCAGAACTAAT+TGG 0.264923 3_3:+11431379 Msa0442140:CDS
CCAGAGATATCTACACTTTC+CGG 0.270119 3_3:+11430503 Msa0442140:CDS
AGAGCTTAGTCGTAGTAATA+TGG 0.275471 3_3:-11431534 None:intergenic
CATGAACTTCCTTAAGAAAA+AGG 0.286513 3_3:+11430874 Msa0442140:CDS
TAGAAGTTGCAAATGGATTA+AGG 0.303372 3_3:+11433921 Msa0442140:three_prime_UTR
TGGAACTAGTGCTCCATCTA+TGG 0.306658 3_3:+11433682 Msa0442140:CDS
TAAGCTCTCTTGCTTGGTTA+TGG 0.306787 3_3:+11431549 Msa0442140:CDS
CCATAACTTTCAGTGCAAAA+AGG 0.316784 3_3:-11431411 None:intergenic
GTTCCTACAAATCAGGAAAA+AGG 0.319893 3_3:+11430180 Msa0442140:CDS
AATCGATTAGGTTCGATAAA+AGG 0.321850 3_3:+11433563 Msa0442140:CDS
TGCATTCATATTTGATGATT+CGG 0.323747 3_3:-11430075 None:intergenic
TCCTTCTGTGCAGCCATAGA+TGG 0.323977 3_3:-11433695 None:intergenic
CGCAACAGAGTTCTCTTAAA+AGG 0.324295 3_3:+11430285 Msa0442140:CDS
AAGTTCATGTTATTGAATAT+TGG 0.333214 3_3:-11430860 None:intergenic
TGCTACATCGGGAAATTTAC+CGG 0.345376 3_3:-11430522 None:intergenic
GGAGAATGCAAATGATTTAG+AGG 0.354434 3_3:+11433715 Msa0442140:CDS
AAAGAGGAACAATTTGATCT+TGG 0.357600 3_3:-11430625 None:intergenic
TTAACTCAATTAATGTTAGT+AGG 0.372455 3_3:+11431035 Msa0442140:CDS
TTCTTTGCGGCATCTGCATC+GGG 0.378589 3_3:-11433098 None:intergenic
GATAATGTATCATCATTTGA+TGG 0.378789 3_3:-11433443 None:intergenic
TCGGAGAGCCTTAAGTTTCC+AGG 0.381408 3_3:+11433476 Msa0442140:CDS
GCTCCTATTCTATTGTCTCC+CGG 0.388519 3_3:+11433197 Msa0442140:CDS
TTCATGCAAGAGATTTGATC+AGG 0.391727 3_3:+11433516 Msa0442140:CDS
GATCAGGGGATTGTTGATAA+AGG 0.391927 3_3:+11433532 Msa0442140:CDS
TGCTTGCCAGCTTCAACCTC+AGG 0.397955 3_3:-11430650 None:intergenic
CGTGTGAGATAGTGGAATAC+AGG 0.400447 3_3:+11430108 Msa0442140:CDS
CAGTTCTTCAATGCCGGATA+AGG 0.400698 3_3:+11430739 Msa0442140:CDS
AAACAGCATCCCTTCTTTGA+AGG 0.402283 3_3:+11433599 Msa0442140:CDS
AAAATCAAGATCAAAGGAAA+AGG 0.405263 3_3:+11431129 Msa0442140:CDS
AGTTCCAAAATCGCGAAACT+TGG 0.408752 3_3:-11433666 None:intergenic
GAATATAGTGTAGGAAGAAA+TGG 0.410692 3_3:-11431511 None:intergenic
ATGGAAAATAATAAGCTTAG+AGG 0.411097 3_3:-11429331 None:intergenic
CTCAAGCCTTAGCACATGTT+TGG 0.411685 3_3:+11430832 Msa0442140:CDS
ATCATTTGATGGACCTTTGA+AGG 0.413604 3_3:-11433432 None:intergenic
GATTAAAGTTTGTCCGTCTC+AGG 0.419899 3_3:+11430310 Msa0442140:CDS
TTTCTTTGCGGCATCTGCAT+CGG 0.420081 3_3:-11433099 None:intergenic
CTCCTATTCTATTGTCTCCC+GGG 0.422640 3_3:+11433198 Msa0442140:CDS
AGTGCCTGCTTTAAACTAAC+AGG 0.422731 3_3:-11430356 None:intergenic
AGTAGTTGTTCCTACAAATC+AGG 0.427686 3_3:+11430173 Msa0442140:CDS
AAAACCTCCAATCCTTGCTC+AGG 0.437304 3_3:+11433119 Msa0442140:CDS
TGAGACGGACAAACTTTAAT+CGG 0.438910 3_3:-11430308 None:intergenic
CATCTCTCAGGCATCAGAAA+TGG 0.441355 3_3:+11430391 Msa0442140:CDS
AAGAGGAACAATTTGATCTT+GGG 0.443105 3_3:-11430624 None:intergenic
AGGAAATACGATGATGTCTT+GGG 0.444414 3_3:+11433941 Msa0442140:three_prime_UTR
AAGGATCCTGAAAATCGATT+AGG 0.446350 3_3:+11433551 Msa0442140:CDS
CCGTCTCAGGCTTCTGGAAT+CGG 0.446466 3_3:+11430323 Msa0442140:CDS
GAAGATGGTTTGACTAACAT+TGG 0.447639 3_3:-11433074 None:intergenic
GCTGTAGATTGGTGGACTTT+CGG 0.448197 3_3:+11433374 Msa0442140:CDS
CTTGCATGAAAACTGACTAT+AGG 0.448357 3_3:-11433503 None:intergenic
AAGGAAATACGATGATGTCT+TGG 0.449768 3_3:+11433940 Msa0442140:three_prime_UTR
CCTTGAGTATTTGCACATGA+TGG 0.456761 3_3:+11432950 Msa0442140:CDS
CTTTCACCTGAGGTTGAAGC+TGG 0.459307 3_3:+11430644 Msa0442140:CDS
TTGGTTATGGAGTATTGTCC+AGG 0.460122 3_3:+11431562 Msa0442140:CDS
AGTTTAAAGCAGGCACTTAG+AGG 0.460496 3_3:+11430362 Msa0442140:CDS
AATTAGTTCTGCAAGATAAA+CGG 0.460739 3_3:-11431377 None:intergenic
TACGACTAAGCTCTCTTGCT+TGG 0.462506 3_3:+11431543 Msa0442140:CDS
TGAGGCACTTTAGACTGATA+AGG 0.462629 3_3:+11431329 Msa0442140:CDS
TAGCAATACGTGTGAGATAG+TGG 0.463837 3_3:+11430100 Msa0442140:CDS
GTTCCAAAATCGCGAAACTT+GGG 0.464333 3_3:-11433665 None:intergenic
AAGCACGAAACTTGCCAATC+CGG 0.464839 3_3:-11433173 None:intergenic
TAACTCAATTAATGTTAGTA+GGG 0.466488 3_3:+11431036 Msa0442140:CDS
AGTAGTTTCAACAAGGAGAA+TGG 0.472113 3_3:+11430935 Msa0442140:CDS
CCTAGTTCTAGCAATGATAG+TGG 0.472374 3_3:+11430797 Msa0442140:CDS
TAGAGGATTGTGCATCTCTC+AGG 0.474171 3_3:+11430379 Msa0442140:CDS
TATGTCCATCTTCGCGTACT+AGG 0.475120 3_3:-11433007 None:intergenic
ACACCCTTTCTGTCTCCAAC+CGG 0.476097 3_3:+11433154 Msa0442140:CDS
TCACTCAATTCTGCTCAATC+CGG 0.476655 3_3:+11429958 Msa0442140:five_prime_UTR
ACTTAACTAGAAGTTGCAAA+TGG 0.478762 3_3:+11433914 Msa0442140:three_prime_UTR
GCACGGTCTAACTCCTTCGT+TGG 0.485875 3_3:+11433299 Msa0442140:CDS
GGCAAAATCTCGAAAGATGA+AGG 0.485968 3_3:+11433220 Msa0442140:CDS
TAGGAGTACCTGGAAACTTA+AGG 0.486452 3_3:-11433484 None:intergenic
CTTTCTGTCTCCAACCGGAT+TGG 0.486624 3_3:+11433159 Msa0442140:CDS
CCAGTTGAGGCCTTCAAAGA+AGG 0.487068 3_3:-11433609 None:intergenic
ATGGATGATCCAACATTTGA+AGG 0.487176 3_3:-11431492 None:intergenic
TCGCGAAACTTGGGGAGCTC+CGG 0.490812 3_3:-11433656 None:intergenic
AGCCCCTGAGCAAGGATTGG+AGG 0.492521 3_3:-11433123 None:intergenic
GACATGGAAACGCTGTAGAT+TGG 0.493784 3_3:+11433363 Msa0442140:CDS
AATATCCTAGTACGCGAAGA+TGG 0.496440 3_3:+11433002 Msa0442140:CDS
TTGTCTCAGTTCTTCAATGC+CGG 0.496819 3_3:+11430733 Msa0442140:CDS
GCCTCAACTGGGCTCTAATA+CGG 0.497805 3_3:+11433621 Msa0442140:CDS
AATAATAAGCTTAGAGGTGA+AGG 0.498273 3_3:-11429325 None:intergenic
TCCATCTATGGCTGCACAGA+AGG 0.498516 3_3:+11433694 Msa0442140:CDS
AGTGTTACAAGGATGAAAAC+AGG 0.498859 3_3:-11433824 None:intergenic
CCGGAAAGTGTAGATATCTC+TGG 0.499119 3_3:-11430503 None:intergenic
TCAATCCGGAGGATCCTTTG+TGG 0.501810 3_3:+11429972 Msa0442140:five_prime_UTR
GACAGAGATGATAGTGAATG+AGG 0.502866 3_3:-11429244 None:intergenic
CTGATAAGGAAGCTTGGTAG+TGG 0.502895 3_3:+11431343 Msa0442140:CDS
GCCCCGGGAGACAATAGAAT+AGG 0.508020 3_3:-11433200 None:intergenic
GTGTAGATATCTCTGGCACT+AGG 0.508864 3_3:-11430496 None:intergenic
GAGCTTAGTCGTAGTAATAT+GGG 0.509342 3_3:-11431533 None:intergenic
ACTAGCCCCTGAGCAAGGAT+TGG 0.510788 3_3:-11433126 None:intergenic
GGAGCCTGTTAGTTTAAAGC+AGG 0.512003 3_3:+11430352 Msa0442140:CDS
AAGCTTGTTGCATTGACCAC+AGG 0.515232 3_3:-11430575 None:intergenic
CTTCAATGCCGGATAAGGAC+CGG 0.517529 3_3:+11430744 Msa0442140:CDS
AAGAGAGATCCTTCAAATGT+TGG 0.520430 3_3:+11431483 Msa0442140:CDS
CAAGATTTACTCGACGTAGC+AGG 0.521864 3_3:-11430713 None:intergenic
TGATTTGAACTGCACGGAGA+TGG 0.522640 3_3:-11431001 None:intergenic
AATACGGTGTGCGGCACCAC+CGG 0.523412 3_3:+11433637 Msa0442140:CDS
CTTCTTTGAAGGCCTCAACT+GGG 0.523669 3_3:+11433610 Msa0442140:CDS
AGTTAAACTTATGTTGGGAA+GGG 0.523851 3_3:+11433771 Msa0442140:exon
TATGGAAAGACTCCCTTCAA+AGG 0.526777 3_3:+11433419 Msa0442140:CDS
AAATCAAGATCAAAGGAAAA+GGG 0.528192 3_3:+11431130 Msa0442140:CDS
CTGAAATTCAAACTAAAACC+AGG 0.528779 3_3:-11431070 None:intergenic
CGAAACTTGGGGAGCTCCGG+TGG 0.530434 3_3:-11433653 None:intergenic
GCATCTGCATCGGGTGAAGA+TGG 0.530836 3_3:-11433089 None:intergenic
ACATGTCAAAACACTCGAGA+TGG 0.531457 3_3:+11431263 Msa0442140:CDS
GAATTAACTTGAAACTGACT+TGG 0.531524 3_3:+11433793 Msa0442140:three_prime_UTR
ATATTGAAGAGGGTATTCCT+AGG 0.531676 3_3:-11429297 None:intergenic
AACATATGAATATCTTGCTC+CGG 0.532760 3_3:+11433322 Msa0442140:CDS
GGTTGGCACGGTAAAGAAGT+TGG 0.534422 3_3:+11430463 Msa0442140:CDS
TAGTTAAACTTATGTTGGGA+AGG 0.535873 3_3:+11433770 Msa0442140:exon
TTTAGACTGATAAGGAAGCT+TGG 0.536813 3_3:+11431337 Msa0442140:CDS
AAAATCCACAAAGGATCCTC+CGG 0.537227 3_3:-11429977 None:intergenic
CCACTATCATTGCTAGAACT+AGG 0.538741 3_3:-11430797 None:intergenic
AGTAGGGATTCAAGTAAACC+TGG 0.539458 3_3:+11431052 Msa0442140:CDS
TCAACTACAAGCTGTGGAAG+TGG 0.540222 3_3:-11433266 None:intergenic
GAGTTAGACCGTGCATTGGT+AGG 0.541228 3_3:-11433290 None:intergenic
TCTGACCTCTAGCACTTCCT+CGG 0.541286 3_3:-11430684 None:intergenic
AGTGAAGAGAGCAATCTTAG+TGG 0.541738 3_3:+11431214 Msa0442140:CDS
TCATTTGATGGACCTTTGAA+GGG 0.546753 3_3:-11433431 None:intergenic
CTTGAGTATTTGCACATGAT+GGG 0.550096 3_3:+11432951 Msa0442140:CDS
CAATCCGGTTGGAGACAGAA+AGG 0.550974 3_3:-11433158 None:intergenic
GCTTCAACCTCAGGTGAAAG+AGG 0.551282 3_3:-11430641 None:intergenic
AATTGTTCCTCTTTCACCTG+AGG 0.552900 3_3:+11430634 Msa0442140:CDS
CAGTTGAGGCCTTCAAAGAA+GGG 0.554044 3_3:-11433608 None:intergenic
TACATTATCAAATGTTGTGT+CGG 0.554976 3_3:+11433457 Msa0442140:CDS
GAAGGTTGAAATATTGAAGA+GGG 0.555189 3_3:-11429307 None:intergenic
AAACCTCCAATCCTTGCTCA+GGG 0.562220 3_3:+11433120 Msa0442140:CDS
ATGGAAACGCTGTAGATTGG+TGG 0.562974 3_3:+11433366 Msa0442140:CDS
CATGCAAGAGATTTGATCAG+GGG 0.564160 3_3:+11433518 Msa0442140:CDS
GTAATATGGGAATATAGTGT+AGG 0.564957 3_3:-11431520 None:intergenic
CCATCATGTGCAAATACTCA+AGG 0.565740 3_3:-11432950 None:intergenic
TGAACTCGATATTGCTACAT+CGG 0.566690 3_3:-11430534 None:intergenic
TCTAGCAATGATAGTGGAGT+GGG 0.567828 3_3:+11430803 Msa0442140:CDS
GAACTCGATATTGCTACATC+GGG 0.570695 3_3:-11430533 None:intergenic
TTCAATGCCGGATAAGGACC+GGG 0.572791 3_3:+11430745 Msa0442140:CDS
ACAAAATCCAAAGGAATGTG+AGG 0.576460 3_3:-11429389 None:intergenic
AGCATGGTAACCTAAATTTG+AGG 0.577285 3_3:+11431311 Msa0442140:CDS
AAACTGACTATAGGAGTACC+TGG 0.581665 3_3:-11433494 None:intergenic
TCATCAAGAGTATCAGAGGT+TGG 0.582375 3_3:+11430446 Msa0442140:CDS
AAGCTTGGTAGTGGAGACAT+TGG 0.583300 3_3:+11431352 Msa0442140:CDS
TGTAGATATCTCTGGCACTA+GGG 0.585695 3_3:-11430495 None:intergenic
AGCACATGCAGATCACCGCC+TGG 0.586843 3_3:-11431580 None:intergenic
CTAGAGGTCATAGTACTTCG+CGG 0.588895 3_3:+11430261 Msa0442140:CDS
TATTGAAGAGGGTATTCCTA+GGG 0.590043 3_3:-11429296 None:intergenic
CTCAATTCTGCTCAATCCGG+AGG 0.590845 3_3:+11429961 Msa0442140:five_prime_UTR
AATCCGGTTGGAGACAGAAA+GGG 0.591341 3_3:-11433157 None:intergenic
GCTTAACAGAAATGACAACT+AGG 0.592360 3_3:+11430594 Msa0442140:CDS
CGCTACTAGTAGTTTCAACA+AGG 0.593597 3_3:+11430928 Msa0442140:CDS
TGCTAATCATTCTATTCCTG+TGG 0.594286 3_3:+11430559 Msa0442140:CDS
TCATGCAAGAGATTTGATCA+GGG 0.596246 3_3:+11433517 Msa0442140:CDS
GAGATTAAAAGTTCATCTAG+AGG 0.597129 3_3:+11430245 Msa0442140:CDS
ATGCTATGATTTGAACTGCA+CGG 0.599211 3_3:-11431007 None:intergenic
ACGAAACTTGCCAATCCGGT+TGG 0.599224 3_3:-11433169 None:intergenic
ATGCAACTAGCCCCTGAGCA+AGG 0.600007 3_3:-11433131 None:intergenic
TGAAGGTTGAAATATTGAAG+AGG 0.601156 3_3:-11429308 None:intergenic
CAGCTCATCAAGAGTATCAG+AGG 0.602114 3_3:+11430442 Msa0442140:CDS
TTCCAAAATCGCGAAACTTG+GGG 0.602237 3_3:-11433664 None:intergenic
TTCTAGCAATGATAGTGGAG+TGG 0.602696 3_3:+11430802 Msa0442140:CDS
TCCTATTCTATTGTCTCCCG+GGG 0.604566 3_3:+11433199 Msa0442140:CDS
AAGCTATACTAAGTGTTACA+AGG 0.604959 3_3:-11433835 None:intergenic
TGCGACAGAAGCAAACATAC+AGG 0.607992 3_3:+11431602 Msa0442140:CDS
GTAGGCTCAACTACAAGCTG+TGG 0.608343 3_3:-11433272 None:intergenic
CATGTCAAAACACTCGAGAT+GGG 0.608358 3_3:+11431264 Msa0442140:CDS
GCTGACATAGCTGCTCAAGT+TGG 0.612275 3_3:+11433242 Msa0442140:CDS
CCGGAGATCATCAAAAGTGA+GGG 0.616865 3_3:+11433341 Msa0442140:CDS
GAAGGAGTTAGACCGTGCAT+TGG 0.619839 3_3:-11433294 None:intergenic
CAAAATCCAAAGGAATGTGA+GGG 0.622924 3_3:-11429388 None:intergenic
TGTATATCGAGATCTAAAGC+CGG 0.625042 3_3:+11432977 Msa0442140:CDS
ATCATCAAAAGTGAGGGACA+TGG 0.626030 3_3:+11433347 Msa0442140:CDS
CAAGCAAACGCTACGAACCG+AGG 0.626592 3_3:+11430667 Msa0442140:CDS
TCCGGAGATCATCAAAAGTG+AGG 0.628843 3_3:+11433340 Msa0442140:CDS
GACTCACATAGATAATTGCA+AGG 0.629263 3_3:-11430005 None:intergenic
ACGAACCGAGGAAGTGCTAG+AGG 0.641215 3_3:+11430679 Msa0442140:CDS
TTACCTGAAACAAAATCCAA+AGG 0.643656 3_3:-11429398 None:intergenic
GTGTGAGATAGTGGAATACA+GGG 0.643810 3_3:+11430109 Msa0442140:CDS
GGCTTCTGGAATCGGCATCG+CGG 0.644254 3_3:+11430331 Msa0442140:CDS
CATCATGTGCAAATACTCAA+GGG 0.648325 3_3:-11432949 None:intergenic
CGTGCGATTCAACAGCAGCA+TGG 0.649464 3_3:+11431295 Msa0442140:CDS
AAGAGTATCAGAGGTTGGCA+CGG 0.653143 3_3:+11430451 Msa0442140:CDS
CTTAGTGGTTCGAGTCGCAG+TGG 0.654632 3_3:+11431229 Msa0442140:CDS
CCGATTCCAGAAGCCTGAGA+CGG 0.655932 3_3:-11430323 None:intergenic
CAAGTAAAATAGTGTAACTG+CGG 0.656906 3_3:-11429135 None:intergenic
TAGTTGAGCCTACCAATGCA+CGG 0.658606 3_3:+11433282 Msa0442140:CDS
AAGGAAATCAAAATCCACAA+AGG 0.666787 3_3:-11429986 None:intergenic
ACTACTAGTAGCGCAGCTTG+AGG 0.673996 3_3:-11430918 None:intergenic
CTATCATTGCTAGAACTAGG+TGG 0.677249 3_3:-11430794 None:intergenic
ATATTCATATGTTCCAACGA+AGG 0.681950 3_3:-11433312 None:intergenic
TTGTAGGAACAACTACTCTG+AGG 0.686360 3_3:-11430167 None:intergenic
CTGGGCTCTAATACGGTGTG+CGG 0.688622 3_3:+11433628 Msa0442140:CDS
AACCTCCAATCCTTGCTCAG+GGG 0.694679 3_3:+11433121 Msa0442140:CDS
ACCGTATTAGAGCCCAGTTG+AGG 0.696795 3_3:-11433622 None:intergenic
GTTATGGAGTATTGTCCAGG+CGG 0.701926 3_3:+11431565 Msa0442140:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAGAAAATATGAAAA+TGG - chr3_3:11429353-11429372 None:intergenic 10.0%
!!! ATTTTCATATTTTCTATTTT+TGG + chr3_3:11429352-11429371 Msa0442140:five_prime_UTR 10.0%
!!! ATTTATTTATTTTGTTTTTG+AGG + chr3_3:11429486-11429505 Msa0442140:intron 10.0%
!! AGTTAATTAATTATTAAGCA+GGG - chr3_3:11429447-11429466 None:intergenic 15.0%
!! AAGTTAATTAATTATTAAGC+AGG - chr3_3:11429448-11429467 None:intergenic 15.0%
!! TTAATCCATCAATTATAAAA+GGG - chr3_3:11429610-11429629 None:intergenic 15.0%
!! GAAAATACAAGATATTATAT+AGG + chr3_3:11432249-11432268 Msa0442140:intron 15.0%
!!! TTTTTTAGTTAAACTTATGT+TGG + chr3_3:11433765-11433784 Msa0442140:exon 15.0%
!!! TTTTTAGTTAAACTTATGTT+GGG + chr3_3:11433766-11433785 Msa0442140:exon 15.0%
!! AAGAAAGAAAAATATAGAGT+AGG + chr3_3:11429086-11429105 Msa0442140:five_prime_UTR 20.0%
!!! GGGTTAATTCTTTTATTTTT+TGG + chr3_3:11429517-11429536 Msa0442140:intron 20.0%
!!! TTTTAGCTTTACAATTAACT+TGG - chr3_3:11429553-11429572 None:intergenic 20.0%
!! CTTAATCCATCAATTATAAA+AGG - chr3_3:11429611-11429630 None:intergenic 20.0%
!!! TTTTTCCTATTTATTCAATC+TGG + chr3_3:11429704-11429723 Msa0442140:intron 20.0%
!! TAAATCCAGATTGAATAAAT+AGG - chr3_3:11429712-11429731 None:intergenic 20.0%
!! ATTACTATTACTACAATTTC+AGG + chr3_3:11429893-11429912 Msa0442140:intron 20.0%
!! AAGTTCATGTTATTGAATAT+TGG - chr3_3:11430863-11430882 None:intergenic 20.0%
!! TTAACTCAATTAATGTTAGT+AGG + chr3_3:11431035-11431054 Msa0442140:CDS 20.0%
!! TAACTCAATTAATGTTAGTA+GGG + chr3_3:11431036-11431055 Msa0442140:CDS 20.0%
!! ATATTGCAAAAAGTTATTCA+GGG - chr3_3:11432711-11432730 None:intergenic 20.0%
!! AATATTGCAAAAAGTTATTC+AGG - chr3_3:11432712-11432731 None:intergenic 20.0%
!!! ATTTTGGAATATTGATAATG+TGG + chr3_3:11432739-11432758 Msa0442140:intron 20.0%
!! GATACAATATTACAATTTCA+AGG + chr3_3:11432773-11432792 Msa0442140:intron 20.0%
!! TCGAAAAATACAACATTTAT+CGG - chr3_3:11432816-11432835 None:intergenic 20.0%
!!! ATGTTGTATTTTTCGATAAA+TGG + chr3_3:11432820-11432839 Msa0442140:intron 20.0%
!!! TTTTTGTTTGAGCTTTTATA+TGG + chr3_3:11433401-11433420 Msa0442140:CDS 20.0%
! AGGAAAGAGAAAAACATAAA+AGG - chr3_3:11429227-11429246 None:intergenic 25.0%
! ATGGAAAATAATAAGCTTAG+AGG - chr3_3:11429334-11429353 None:intergenic 25.0%
! ATTATTAAGCAGGGAAAAAA+GGG - chr3_3:11429438-11429457 None:intergenic 25.0%
! AATTATTAAGCAGGGAAAAA+AGG - chr3_3:11429439-11429458 None:intergenic 25.0%
!! TTGCTATTAATTATGATCCA+TGG + chr3_3:11429639-11429658 Msa0442140:intron 25.0%
!!! CTTGGTTTTACATTGTTAAA+GGG + chr3_3:11429924-11429943 Msa0442140:five_prime_UTR 25.0%
!! TGCATTCATATTTGATGATT+CGG - chr3_3:11430078-11430097 None:intergenic 25.0%
!! CTTTCTTTACCTTTTTCTTA+AGG - chr3_3:11430886-11430905 None:intergenic 25.0%
! AAAATCAAGATCAAAGGAAA+AGG + chr3_3:11431129-11431148 Msa0442140:CDS 25.0%
! AAATCAAGATCAAAGGAAAA+GGG + chr3_3:11431130-11431149 Msa0442140:CDS 25.0%
!!! AATTAGTTCTGCAAGATAAA+CGG - chr3_3:11431380-11431399 None:intergenic 25.0%
!! AGTTATGGACAATGAATTTT+TGG + chr3_3:11431426-11431445 Msa0442140:CDS 25.0%
!!! TTTTGAAACTTAATCTTGCT+TGG + chr3_3:11431704-11431723 Msa0442140:intron 25.0%
!! TATGTGATTTATTTCTCTTG+GGG - chr3_3:11431754-11431773 None:intergenic 25.0%
!! CTATGTGATTTATTTCTCTT+GGG - chr3_3:11431755-11431774 None:intergenic 25.0%
!! TCTATGTGATTTATTTCTCT+TGG - chr3_3:11431756-11431775 None:intergenic 25.0%
!!! CAAAACTGTATTGATTAATG+TGG + chr3_3:11431782-11431801 Msa0442140:intron 25.0%
!! GCACATAAAGACTATTATTT+TGG - chr3_3:11431808-11431827 None:intergenic 25.0%
! ATCATATTATACCTAAGAAG+TGG - chr3_3:11432361-11432380 None:intergenic 25.0%
!! TAGGTATAATATGATCCTTT+TGG + chr3_3:11432366-11432385 Msa0442140:intron 25.0%
!! AGGTATAATATGATCCTTTT+GGG + chr3_3:11432367-11432386 Msa0442140:intron 25.0%
! AGATTGAGTCCAATAAAATA+GGG - chr3_3:11432396-11432415 None:intergenic 25.0%
!!! ATTTTGGTATACTGATAATG+TGG - chr3_3:11432538-11432557 None:intergenic 25.0%
!! TCTAATTTTGTAGCTCATTT+TGG - chr3_3:11432554-11432573 None:intergenic 25.0%
! TACAGTCCTTACAAATATTA+AGG + chr3_3:11432680-11432699 Msa0442140:intron 25.0%
! ACAGTCCTTACAAATATTAA+GGG + chr3_3:11432681-11432700 Msa0442140:intron 25.0%
!! TGCAATATTAGAGATCATTT+TGG + chr3_3:11432723-11432742 Msa0442140:intron 25.0%
! TTATCGGTAAATATCCAATT+TGG - chr3_3:11432800-11432819 None:intergenic 25.0%
! GATAATGTATCATCATTTGA+TGG - chr3_3:11433446-11433465 None:intergenic 25.0%
! TACATTATCAAATGTTGTGT+CGG + chr3_3:11433457-11433476 Msa0442140:CDS 25.0%
CAAGTAAAATAGTGTAACTG+CGG - chr3_3:11429138-11429157 None:intergenic 30.0%
GAAGGTTGAAATATTGAAGA+GGG - chr3_3:11429310-11429329 None:intergenic 30.0%
TGAAGGTTGAAATATTGAAG+AGG - chr3_3:11429311-11429330 None:intergenic 30.0%
AATAATAAGCTTAGAGGTGA+AGG - chr3_3:11429328-11429347 None:intergenic 30.0%
!! ATTCCTTTGGATTTTGTTTC+AGG + chr3_3:11429395-11429414 Msa0442140:five_prime_UTR 30.0%
TTACCTGAAACAAAATCCAA+AGG - chr3_3:11429401-11429420 None:intergenic 30.0%
TTATTAAGCAGGGAAAAAAG+GGG - chr3_3:11429437-11429456 None:intergenic 30.0%
! AGCTACCCTTTTATAATTGA+TGG + chr3_3:11429602-11429621 Msa0442140:intron 30.0%
GAGAATAATTATAGTCACCA+TGG - chr3_3:11429659-11429678 None:intergenic 30.0%
!!! GCTTGGTTTTACATTGTTAA+AGG + chr3_3:11429923-11429942 Msa0442140:five_prime_UTR 30.0%
AAGGAAATCAAAATCCACAA+AGG - chr3_3:11429989-11430008 None:intergenic 30.0%
! TGATATTGATCGTCTTTTCA+AGG + chr3_3:11430217-11430236 Msa0442140:CDS 30.0%
GAGATTAAAAGTTCATCTAG+AGG + chr3_3:11430245-11430264 Msa0442140:CDS 30.0%
AAGAGGAACAATTTGATCTT+GGG - chr3_3:11430627-11430646 None:intergenic 30.0%
AAAGAGGAACAATTTGATCT+TGG - chr3_3:11430628-11430647 None:intergenic 30.0%
! CACAATGAAAATTTTTCTCC+CGG - chr3_3:11430766-11430785 None:intergenic 30.0%
CATGAACTTCCTTAAGAAAA+AGG + chr3_3:11430874-11430893 Msa0442140:CDS 30.0%
CTGAAATTCAAACTAAAACC+AGG - chr3_3:11431073-11431092 None:intergenic 30.0%
TGACGAAAAATCAAGATCAA+AGG + chr3_3:11431123-11431142 Msa0442140:CDS 30.0%
GTTTATCTTGCAGAACTAAT+TGG + chr3_3:11431379-11431398 Msa0442140:CDS 30.0%
GAATATAGTGTAGGAAGAAA+TGG - chr3_3:11431514-11431533 None:intergenic 30.0%
GTAATATGGGAATATAGTGT+AGG - chr3_3:11431523-11431542 None:intergenic 30.0%
AAACTTAATCTTGCTTGGAA+AGG + chr3_3:11431709-11431728 Msa0442140:intron 30.0%
AACTTAATCTTGCTTGGAAA+GGG + chr3_3:11431710-11431729 Msa0442140:intron 30.0%
AAAAAACTAGTCCAATAGGT+GGG - chr3_3:11431983-11432002 None:intergenic 30.0%
!!! ACCTATTGGACTAGTTTTTT+GGG + chr3_3:11431983-11432002 Msa0442140:intron 30.0%
GAGATTGAGTCCAATAAAAT+AGG - chr3_3:11432397-11432416 None:intergenic 30.0%
GTTCTTATTCAAGTATAAGC+TGG + chr3_3:11432459-11432478 Msa0442140:intron 30.0%
TCAATTCTATGGACCAATTA+GGG - chr3_3:11432493-11432512 None:intergenic 30.0%
TTCAATTCTATGGACCAATT+AGG - chr3_3:11432494-11432513 None:intergenic 30.0%
TAATTGGTCCATAGAATTGA+AGG + chr3_3:11432493-11432512 Msa0442140:intron 30.0%
AATACAGTCCTTCAATTCTA+TGG - chr3_3:11432504-11432523 None:intergenic 30.0%
ATAGAATTGAAGGACTGTAT+TGG + chr3_3:11432503-11432522 Msa0442140:intron 30.0%
TAGAATTGAAGGACTGTATT+GGG + chr3_3:11432504-11432523 Msa0442140:intron 30.0%
TATTAACAGATCCAAACAGA+GGG - chr3_3:11432596-11432615 None:intergenic 30.0%
TCGAATGTGAATTGAAACTA+CGG - chr3_3:11432640-11432659 None:intergenic 30.0%
GTTGTCCCTTAATATTTGTA+AGG - chr3_3:11432689-11432708 None:intergenic 30.0%
!! TTGGAATATTGATAATGTGG+AGG + chr3_3:11432742-11432761 Msa0442140:intron 30.0%
TACAATTTCAAGGACCAAAT+TGG + chr3_3:11432783-11432802 Msa0442140:intron 30.0%
ATATTCATATGTTCCAACGA+AGG - chr3_3:11433315-11433334 None:intergenic 30.0%
AACATATGAATATCTTGCTC+CGG + chr3_3:11433322-11433341 Msa0442140:CDS 30.0%
AATCGATTAGGTTCGATAAA+AGG + chr3_3:11433563-11433582 Msa0442140:CDS 30.0%
TAGTTAAACTTATGTTGGGA+AGG + chr3_3:11433770-11433789 Msa0442140:exon 30.0%
AGTTAAACTTATGTTGGGAA+GGG + chr3_3:11433771-11433790 Msa0442140:exon 30.0%
! GAATTAACTTGAAACTGACT+TGG + chr3_3:11433793-11433812 Msa0442140:three_prime_UTR 30.0%
AAGCTATACTAAGTGTTACA+AGG - chr3_3:11433838-11433857 None:intergenic 30.0%
ACTTAACTAGAAGTTGCAAA+TGG + chr3_3:11433914-11433933 Msa0442140:three_prime_UTR 30.0%
!! TAGAAGTTGCAAATGGATTA+AGG + chr3_3:11433921-11433940 Msa0442140:three_prime_UTR 30.0%
! CTTCAAACTTTTCTAACCCT+AGG + chr3_3:11429280-11429299 Msa0442140:five_prime_UTR 35.0%
!! TATTGAAGAGGGTATTCCTA+GGG - chr3_3:11429299-11429318 None:intergenic 35.0%
!! ATATTGAAGAGGGTATTCCT+AGG - chr3_3:11429300-11429319 None:intergenic 35.0%
CAAAATCCAAAGGAATGTGA+GGG - chr3_3:11429391-11429410 None:intergenic 35.0%
ACAAAATCCAAAGGAATGTG+AGG - chr3_3:11429392-11429411 None:intergenic 35.0%
!!! TTTGTTTTTGAGGTGTTTGC+TGG + chr3_3:11429496-11429515 Msa0442140:intron 35.0%
!!! TTGTTTTTGAGGTGTTTGCT+GGG + chr3_3:11429497-11429516 Msa0442140:intron 35.0%
AACTATCTAACCTCTTCAGT+TGG + chr3_3:11429835-11429854 Msa0442140:intron 35.0%
!!! CAATTTCAGGTTTTGATGCT+TGG + chr3_3:11429906-11429925 Msa0442140:intron 35.0%
GACTCACATAGATAATTGCA+AGG - chr3_3:11430008-11430027 None:intergenic 35.0%
! TTTTCATCTGTTTCGAACTC+GGG - chr3_3:11430146-11430165 None:intergenic 35.0%
! CTTTTCATCTGTTTCGAACT+CGG - chr3_3:11430147-11430166 None:intergenic 35.0%
AGTAGTTGTTCCTACAAATC+AGG + chr3_3:11430173-11430192 Msa0442140:CDS 35.0%
GTTCCTACAAATCAGGAAAA+AGG + chr3_3:11430180-11430199 Msa0442140:CDS 35.0%
!! GTACCTTTTTCCTGATTTGT+AGG - chr3_3:11430186-11430205 None:intergenic 35.0%
TGAGACGGACAAACTTTAAT+CGG - chr3_3:11430311-11430330 None:intergenic 35.0%
TGAACTCGATATTGCTACAT+CGG - chr3_3:11430537-11430556 None:intergenic 35.0%
TGCTAATCATTCTATTCCTG+TGG + chr3_3:11430559-11430578 Msa0442140:CDS 35.0%
GCTTAACAGAAATGACAACT+AGG + chr3_3:11430594-11430613 Msa0442140:CDS 35.0%
AGTAGTTTCAACAAGGAGAA+TGG + chr3_3:11430935-11430954 Msa0442140:CDS 35.0%
ATGCTATGATTTGAACTGCA+CGG - chr3_3:11431010-11431029 None:intergenic 35.0%
AGCATGGTAACCTAAATTTG+AGG + chr3_3:11431311-11431330 Msa0442140:CDS 35.0%
! GTCTAAAGTGCCTCAAATTT+AGG - chr3_3:11431324-11431343 None:intergenic 35.0%
TTTAGACTGATAAGGAAGCT+TGG + chr3_3:11431337-11431356 Msa0442140:CDS 35.0%
CCATAACTTTCAGTGCAAAA+AGG - chr3_3:11431414-11431433 None:intergenic 35.0%
! CCTTTTTGCACTGAAAGTTA+TGG + chr3_3:11431411-11431430 Msa0442140:CDS 35.0%
!!! ACAATGAATTTTTGGCTAGC+AGG + chr3_3:11431434-11431453 Msa0442140:CDS 35.0%
AAGAGAGATCCTTCAAATGT+TGG + chr3_3:11431483-11431502 Msa0442140:CDS 35.0%
ATGGATGATCCAACATTTGA+AGG - chr3_3:11431495-11431514 None:intergenic 35.0%
GAGCTTAGTCGTAGTAATAT+GGG - chr3_3:11431536-11431555 None:intergenic 35.0%
AGAGCTTAGTCGTAGTAATA+TGG - chr3_3:11431537-11431556 None:intergenic 35.0%
GCTGATTAGGTATACTAGAT+TGG + chr3_3:11431845-11431864 Msa0442140:intron 35.0%
! TACACGTTGTAGAGTTTGTT+AGG + chr3_3:11431901-11431920 Msa0442140:intron 35.0%
CACTTTGATATACTCGATGT+TGG - chr3_3:11431930-11431949 None:intergenic 35.0%
! GTATATCAAAGTGCTTGATG+TGG + chr3_3:11431937-11431956 Msa0442140:intron 35.0%
CAAAAAACTAGTCCAATAGG+TGG - chr3_3:11431984-11432003 None:intergenic 35.0%
!!! CACCTATTGGACTAGTTTTT+TGG + chr3_3:11431982-11432001 Msa0442140:intron 35.0%
ACCCAAAAAACTAGTCCAAT+AGG - chr3_3:11431987-11432006 None:intergenic 35.0%
!!! TTGGACTAGTTTTTTGGGTT+TGG + chr3_3:11431988-11432007 Msa0442140:intron 35.0%
!! CAATGAAAGCACCAATTGTT+AGG - chr3_3:11432034-11432053 None:intergenic 35.0%
TTCACTCACCTATCAGTATT+CGG - chr3_3:11432107-11432126 None:intergenic 35.0%
AAAAAGGAAATGGCTACCAT+CGG + chr3_3:11432133-11432152 Msa0442140:intron 35.0%
! GATGACTCACTAGTTTATGA+AGG - chr3_3:11432291-11432310 None:intergenic 35.0%
TCATAGTCATTCCACTTCTT+AGG + chr3_3:11432347-11432366 Msa0442140:intron 35.0%
TTGAGTCCAATAAAATAGGG+AGG - chr3_3:11432393-11432412 None:intergenic 35.0%
GATATGAGCTACATTGAAGT+AGG - chr3_3:11432424-11432443 None:intergenic 35.0%
! ATCAAGTTTTTCCCTCTGTT+TGG + chr3_3:11432582-11432601 Msa0442140:intron 35.0%
GTATTAACAGATCCAAACAG+AGG - chr3_3:11432597-11432616 None:intergenic 35.0%
AAACTACGGGAATAATGTCA+GGG - chr3_3:11432626-11432645 None:intergenic 35.0%
CGAATGTGAATTGAAACTAC+GGG - chr3_3:11432639-11432658 None:intergenic 35.0%
GGACTGTAATGACATTAAGT+TGG - chr3_3:11432668-11432687 None:intergenic 35.0%
! TTTTCGATAAATGGTTTCCC+TGG + chr3_3:11432829-11432848 Msa0442140:intron 35.0%
!! TTGCATTAGTTTGTCATCCA+GGG - chr3_3:11432849-11432868 None:intergenic 35.0%
ACTTTAGTCAGGAAAATGAC+TGG - chr3_3:11432884-11432903 None:intergenic 35.0%
GCAATGACATTACTTTAGTC+AGG - chr3_3:11432895-11432914 None:intergenic 35.0%
AGTAATGTCATTGCATTTCC+AGG + chr3_3:11432901-11432920 Msa0442140:intron 35.0%
AACTTCAGCAACATAAAACC+TGG - chr3_3:11432922-11432941 None:intergenic 35.0%
CATCATGTGCAAATACTCAA+GGG - chr3_3:11432952-11432971 None:intergenic 35.0%
CTTGAGTATTTGCACATGAT+GGG + chr3_3:11432951-11432970 Msa0442140:CDS 35.0%
! TGTATATCGAGATCTAAAGC+CGG + chr3_3:11432977-11432996 Msa0442140:CDS 35.0%
GAAGATGGTTTGACTAACAT+TGG - chr3_3:11433077-11433096 None:intergenic 35.0%
! TCATTTGATGGACCTTTGAA+GGG - chr3_3:11433434-11433453 None:intergenic 35.0%
! ATCATTTGATGGACCTTTGA+AGG - chr3_3:11433435-11433454 None:intergenic 35.0%
CTTGCATGAAAACTGACTAT+AGG - chr3_3:11433506-11433525 None:intergenic 35.0%
TTCATGCAAGAGATTTGATC+AGG + chr3_3:11433516-11433535 Msa0442140:CDS 35.0%
TCATGCAAGAGATTTGATCA+GGG + chr3_3:11433517-11433536 Msa0442140:CDS 35.0%
AAGGATCCTGAAAATCGATT+AGG + chr3_3:11433551-11433570 Msa0442140:CDS 35.0%
!! ATCGAACCTAATCGATTTTC+AGG - chr3_3:11433560-11433579 None:intergenic 35.0%
GGAGAATGCAAATGATTTAG+AGG + chr3_3:11433715-11433734 Msa0442140:CDS 35.0%
AGTGTTACAAGGATGAAAAC+AGG - chr3_3:11433827-11433846 None:intergenic 35.0%
AAGGAAATACGATGATGTCT+TGG + chr3_3:11433940-11433959 Msa0442140:three_prime_UTR 35.0%
AGGAAATACGATGATGTCTT+GGG + chr3_3:11433941-11433960 Msa0442140:three_prime_UTR 35.0%
! GACAGAGATGATAGTGAATG+AGG - chr3_3:11429247-11429266 None:intergenic 40.0%
! AGTTTTCCCTCACATTCCTT+TGG + chr3_3:11429382-11429401 Msa0442140:five_prime_UTR 40.0%
GAATTTCAGTCCAACTGAAG+AGG - chr3_3:11429848-11429867 None:intergenic 40.0%
TCACTCAATTCTGCTCAATC+CGG + chr3_3:11429958-11429977 Msa0442140:five_prime_UTR 40.0%
AAAATCCACAAAGGATCCTC+CGG - chr3_3:11429980-11429999 None:intergenic 40.0%
TAGCAATACGTGTGAGATAG+TGG + chr3_3:11430100-11430119 Msa0442140:CDS 40.0%
!! GTGTGAGATAGTGGAATACA+GGG + chr3_3:11430109-11430128 Msa0442140:CDS 40.0%
TTGTAGGAACAACTACTCTG+AGG - chr3_3:11430170-11430189 None:intergenic 40.0%
!! AGGAAAAAGGTACTCGATTG+AGG + chr3_3:11430193-11430212 Msa0442140:CDS 40.0%
CGCAACAGAGTTCTCTTAAA+AGG + chr3_3:11430285-11430304 Msa0442140:CDS 40.0%
GATTAAAGTTTGTCCGTCTC+AGG + chr3_3:11430310-11430329 Msa0442140:CDS 40.0%
! AGTGCCTGCTTTAAACTAAC+AGG - chr3_3:11430359-11430378 None:intergenic 40.0%
! AGTTTAAAGCAGGCACTTAG+AGG + chr3_3:11430362-11430381 Msa0442140:CDS 40.0%
!! TCATCAAGAGTATCAGAGGT+TGG + chr3_3:11430446-11430465 Msa0442140:CDS 40.0%
TGTAGATATCTCTGGCACTA+GGG - chr3_3:11430498-11430517 None:intergenic 40.0%
CCAGAGATATCTACACTTTC+CGG + chr3_3:11430503-11430522 Msa0442140:CDS 40.0%
TGCTACATCGGGAAATTTAC+CGG - chr3_3:11430525-11430544 None:intergenic 40.0%
GAACTCGATATTGCTACATC+GGG - chr3_3:11430536-11430555 None:intergenic 40.0%
AATTGTTCCTCTTTCACCTG+AGG + chr3_3:11430634-11430653 Msa0442140:CDS 40.0%
TTGTCTCAGTTCTTCAATGC+CGG + chr3_3:11430733-11430752 Msa0442140:CDS 40.0%
CTATCATTGCTAGAACTAGG+TGG - chr3_3:11430797-11430816 None:intergenic 40.0%
CCACTATCATTGCTAGAACT+AGG - chr3_3:11430800-11430819 None:intergenic 40.0%
!! CCTAGTTCTAGCAATGATAG+TGG + chr3_3:11430797-11430816 Msa0442140:CDS 40.0%
!! TTCTAGCAATGATAGTGGAG+TGG + chr3_3:11430802-11430821 Msa0442140:CDS 40.0%
!! TCTAGCAATGATAGTGGAGT+GGG + chr3_3:11430803-11430822 Msa0442140:CDS 40.0%
! GTTTTGCCAAACATGTGCTA+AGG - chr3_3:11430841-11430860 None:intergenic 40.0%
CGCTACTAGTAGTTTCAACA+AGG + chr3_3:11430928-11430947 Msa0442140:CDS 40.0%
AGTAGGGATTCAAGTAAACC+TGG + chr3_3:11431052-11431071 Msa0442140:CDS 40.0%
TCAGAGCTCAAAAAGTAGCA+TGG + chr3_3:11431162-11431181 Msa0442140:CDS 40.0%
CAGAGCTCAAAAAGTAGCAT+GGG + chr3_3:11431163-11431182 Msa0442140:CDS 40.0%
AGTGAAGAGAGCAATCTTAG+TGG + chr3_3:11431214-11431233 Msa0442140:CDS 40.0%
ACATGTCAAAACACTCGAGA+TGG + chr3_3:11431263-11431282 Msa0442140:CDS 40.0%
CATGTCAAAACACTCGAGAT+GGG + chr3_3:11431264-11431283 Msa0442140:CDS 40.0%
! TGAGGCACTTTAGACTGATA+AGG + chr3_3:11431329-11431348 Msa0442140:CDS 40.0%
TAAGCTCTCTTGCTTGGTTA+TGG + chr3_3:11431549-11431568 Msa0442140:CDS 40.0%
!! TTGGTTATGGAGTATTGTCC+AGG + chr3_3:11431562-11431581 Msa0442140:CDS 40.0%
! GCAAACATACAGGAGCTTTT+CGG + chr3_3:11431612-11431631 Msa0442140:CDS 40.0%
TAATCTTGCTTGGAAAGGGA+TGG + chr3_3:11431714-11431733 Msa0442140:intron 40.0%
TGGGCTTAAGTCCTAACAAT+TGG + chr3_3:11432020-11432039 Msa0442140:intron 40.0%
! TTGGTGCTTTCATTGAGAGT+TGG + chr3_3:11432039-11432058 Msa0442140:intron 40.0%
TTTCATTGAGAGTTGGACCA+CGG + chr3_3:11432046-11432065 Msa0442140:intron 40.0%
AACACCTTAATCCAGCCTAT+AGG - chr3_3:11432081-11432100 None:intergenic 40.0%
GTGTTTCACCGAATACTGAT+AGG + chr3_3:11432096-11432115 Msa0442140:intron 40.0%
! GATGGTAGCCATTTCCTTTT+TGG - chr3_3:11432134-11432153 None:intergenic 40.0%
AAAAGGAAATGGCTACCATC+GGG + chr3_3:11432134-11432153 Msa0442140:intron 40.0%
ATAAAATAGGGAGGCCCAAA+AGG - chr3_3:11432384-11432403 None:intergenic 40.0%
! TTTGGGCCTCCCTATTTTAT+TGG + chr3_3:11432384-11432403 Msa0442140:intron 40.0%
GAGCTACATTGAAGTAGGAT+TGG - chr3_3:11432419-11432438 None:intergenic 40.0%
TAAGAACTCTGATACGAGCA+AGG - chr3_3:11432446-11432465 None:intergenic 40.0%
GCTGGAGTAAATACCCTAAT+TGG + chr3_3:11432477-11432496 Msa0442140:intron 40.0%
GAAACTACGGGAATAATGTC+AGG - chr3_3:11432627-11432646 None:intergenic 40.0%
!! CTTGCATTAGTTTGTCATCC+AGG - chr3_3:11432850-11432869 None:intergenic 40.0%
CCATCATGTGCAAATACTCA+AGG - chr3_3:11432953-11432972 None:intergenic 40.0%
CCTTGAGTATTTGCACATGA+TGG + chr3_3:11432950-11432969 Msa0442140:CDS 40.0%
! TCGCGTACTAGGATATTTTC+CGG - chr3_3:11432999-11433018 None:intergenic 40.0%
AATATCCTAGTACGCGAAGA+TGG + chr3_3:11433002-11433021 Msa0442140:CDS 40.0%
! AGGATTGGAGGTTTTCTTTG+CGG - chr3_3:11433114-11433133 None:intergenic 40.0%
GGCAAAATCTCGAAAGATGA+AGG + chr3_3:11433220-11433239 Msa0442140:CDS 40.0%
ATCATCAAAAGTGAGGGACA+TGG + chr3_3:11433347-11433366 Msa0442140:CDS 40.0%
TATGGAAAGACTCCCTTCAA+AGG + chr3_3:11433419-11433438 Msa0442140:CDS 40.0%
!! TAGGAGTACCTGGAAACTTA+AGG - chr3_3:11433487-11433506 None:intergenic 40.0%
!! AAACTGACTATAGGAGTACC+TGG - chr3_3:11433497-11433516 None:intergenic 40.0%
CATGCAAGAGATTTGATCAG+GGG + chr3_3:11433518-11433537 Msa0442140:CDS 40.0%
! GATCAGGGGATTGTTGATAA+AGG + chr3_3:11433532-11433551 Msa0442140:CDS 40.0%
AAACAGCATCCCTTCTTTGA+AGG + chr3_3:11433599-11433618 Msa0442140:CDS 40.0%
TTCCAAAATCGCGAAACTTG+GGG - chr3_3:11433667-11433686 None:intergenic 40.0%
GTTCCAAAATCGCGAAACTT+GGG - chr3_3:11433668-11433687 None:intergenic 40.0%
AGTTCCAAAATCGCGAAACT+TGG - chr3_3:11433669-11433688 None:intergenic 40.0%
!! CGTGTGAGATAGTGGAATAC+AGG + chr3_3:11430108-11430127 Msa0442140:CDS 45.0%
CTAGAGGTCATAGTACTTCG+CGG + chr3_3:11430261-11430280 Msa0442140:CDS 45.0%
! GGAGCCTGTTAGTTTAAAGC+AGG + chr3_3:11430352-11430371 Msa0442140:CDS 45.0%
TAGAGGATTGTGCATCTCTC+AGG + chr3_3:11430379-11430398 Msa0442140:CDS 45.0%
CATCTCTCAGGCATCAGAAA+TGG + chr3_3:11430391-11430410 Msa0442140:CDS 45.0%
!! CAGCTCATCAAGAGTATCAG+AGG + chr3_3:11430442-11430461 Msa0442140:CDS 45.0%
!! AAGAGTATCAGAGGTTGGCA+CGG + chr3_3:11430451-11430470 Msa0442140:CDS 45.0%
GTGTAGATATCTCTGGCACT+AGG - chr3_3:11430499-11430518 None:intergenic 45.0%
! CCGGAAAGTGTAGATATCTC+TGG - chr3_3:11430506-11430525 None:intergenic 45.0%
!! AAGCTTGTTGCATTGACCAC+AGG - chr3_3:11430578-11430597 None:intergenic 45.0%
CAAGATTTACTCGACGTAGC+AGG - chr3_3:11430716-11430735 None:intergenic 45.0%
CAGTTCTTCAATGCCGGATA+AGG + chr3_3:11430739-11430758 Msa0442140:CDS 45.0%
! TTTTTCTCCCGGTCCTTATC+CGG - chr3_3:11430755-11430774 None:intergenic 45.0%
CTCAAGCCTTAGCACATGTT+TGG + chr3_3:11430832-11430851 Msa0442140:CDS 45.0%
TGATTTGAACTGCACGGAGA+TGG - chr3_3:11431004-11431023 None:intergenic 45.0%
!!! CTCGAGTGTTTTGACATGTG+CGG - chr3_3:11431262-11431281 None:intergenic 45.0%
CTGATAAGGAAGCTTGGTAG+TGG + chr3_3:11431343-11431362 Msa0442140:CDS 45.0%
!! AAGCTTGGTAGTGGAGACAT+TGG + chr3_3:11431352-11431371 Msa0442140:CDS 45.0%
TACGACTAAGCTCTCTTGCT+TGG + chr3_3:11431543-11431562 Msa0442140:CDS 45.0%
!! GTTATGGAGTATTGTCCAGG+CGG + chr3_3:11431565-11431584 Msa0442140:CDS 45.0%
TGCGACAGAAGCAAACATAC+AGG + chr3_3:11431602-11431621 Msa0442140:CDS 45.0%
AAGCAGCTAGGTAGGGTTTA+TGG + chr3_3:11431638-11431657 Msa0442140:intron 45.0%
TTATGTGCCTGAAACTCAGC+AGG + chr3_3:11431820-11431839 Msa0442140:intron 45.0%
! AACTCAGCAGGATGCTGATT+AGG + chr3_3:11431832-11431851 Msa0442140:intron 45.0%
GATGTGGTACTTAAGCCTTG+AGG + chr3_3:11431953-11431972 Msa0442140:intron 45.0%
TGTTAGGACTTAAGCCCATG+AGG - chr3_3:11432018-11432037 None:intergenic 45.0%
GCTACCTATAGGCTGGATTA+AGG + chr3_3:11432074-11432093 Msa0442140:intron 45.0%
TGAAGCCGCCAAAAAGGAAA+TGG + chr3_3:11432123-11432142 Msa0442140:intron 45.0%
! GGTAGCCATTTCCTTTTTGG+CGG - chr3_3:11432131-11432150 None:intergenic 45.0%
TATGTCCATCTTCGCGTACT+AGG - chr3_3:11433010-11433029 None:intergenic 45.0%
TTTCTTTGCGGCATCTGCAT+CGG - chr3_3:11433102-11433121 None:intergenic 45.0%
AAAACCTCCAATCCTTGCTC+AGG + chr3_3:11433119-11433138 Msa0442140:CDS 45.0%
AAACCTCCAATCCTTGCTCA+GGG + chr3_3:11433120-11433139 Msa0442140:CDS 45.0%
AATCCGGTTGGAGACAGAAA+GGG - chr3_3:11433160-11433179 None:intergenic 45.0%
AAGCACGAAACTTGCCAATC+CGG - chr3_3:11433176-11433195 None:intergenic 45.0%
GCTCCTATTCTATTGTCTCC+CGG + chr3_3:11433197-11433216 Msa0442140:CDS 45.0%
CTCCTATTCTATTGTCTCCC+GGG + chr3_3:11433198-11433217 Msa0442140:CDS 45.0%
TCCTATTCTATTGTCTCCCG+GGG + chr3_3:11433199-11433218 Msa0442140:CDS 45.0%
! ATCTTTCGAGATTTTGCCCC+GGG - chr3_3:11433218-11433237 None:intergenic 45.0%
! CATCTTTCGAGATTTTGCCC+CGG - chr3_3:11433219-11433238 None:intergenic 45.0%
TCAACTACAAGCTGTGGAAG+TGG - chr3_3:11433269-11433288 None:intergenic 45.0%
TAGTTGAGCCTACCAATGCA+CGG + chr3_3:11433282-11433301 Msa0442140:CDS 45.0%
TCCGGAGATCATCAAAAGTG+AGG + chr3_3:11433340-11433359 Msa0442140:CDS 45.0%
!! CCCTCACTTTTGATGATCTC+CGG - chr3_3:11433344-11433363 None:intergenic 45.0%
CCGGAGATCATCAAAAGTGA+GGG + chr3_3:11433341-11433360 Msa0442140:CDS 45.0%
GACATGGAAACGCTGTAGAT+TGG + chr3_3:11433363-11433382 Msa0442140:CDS 45.0%
ATGGAAACGCTGTAGATTGG+TGG + chr3_3:11433366-11433385 Msa0442140:CDS 45.0%
!! GCTGTAGATTGGTGGACTTT+CGG + chr3_3:11433374-11433393 Msa0442140:CDS 45.0%
CAGTTGAGGCCTTCAAAGAA+GGG - chr3_3:11433611-11433630 None:intergenic 45.0%
! CTTCTTTGAAGGCCTCAACT+GGG + chr3_3:11433610-11433629 Msa0442140:CDS 45.0%
TGGAACTAGTGCTCCATCTA+TGG + chr3_3:11433682-11433701 Msa0442140:CDS 45.0%
TGAGAGAGAGAGAGAGAGAG+AGG - chr3_3:11429179-11429198 None:intergenic 50.0%
CTCAATTCTGCTCAATCCGG+AGG + chr3_3:11429961-11429980 Msa0442140:five_prime_UTR 50.0%
TCAATCCGGAGGATCCTTTG+TGG + chr3_3:11429972-11429991 Msa0442140:five_prime_UTR 50.0%
GGTTGGCACGGTAAAGAAGT+TGG + chr3_3:11430463-11430482 Msa0442140:CDS 50.0%
GCTTCAACCTCAGGTGAAAG+AGG - chr3_3:11430644-11430663 None:intergenic 50.0%
CTTTCACCTGAGGTTGAAGC+TGG + chr3_3:11430644-11430663 Msa0442140:CDS 50.0%
TCTGACCTCTAGCACTTCCT+CGG - chr3_3:11430687-11430706 None:intergenic 50.0%
CTTCAATGCCGGATAAGGAC+CGG + chr3_3:11430744-11430763 Msa0442140:CDS 50.0%
TTCAATGCCGGATAAGGACC+GGG + chr3_3:11430745-11430764 Msa0442140:CDS 50.0%
ACTACTAGTAGCGCAGCTTG+AGG - chr3_3:11430921-11430940 None:intergenic 50.0%
!! GTTTTGACATGTGCGGTCGT+TGG - chr3_3:11431255-11431274 None:intergenic 50.0%
CTTGCTTGGAAAGGGATGGA+AGG + chr3_3:11431718-11431737 Msa0442140:intron 50.0%
TGGAAAGGGATGGAAGGTCA+TGG + chr3_3:11431724-11431743 Msa0442140:intron 50.0%
GGAAAGGGATGGAAGGTCAT+GGG + chr3_3:11431725-11431744 Msa0442140:intron 50.0%
TCAGCATCCTGCTGAGTTTC+AGG - chr3_3:11431830-11431849 None:intergenic 50.0%
CAATAGGTGGGAGAACCTCA+AGG - chr3_3:11431971-11431990 None:intergenic 50.0%
CTTGAGGTTCTCCCACCTAT+TGG + chr3_3:11431969-11431988 Msa0442140:intron 50.0%
!! TTTGGGTTTGGCTCTCCTCA+TGG + chr3_3:11432000-11432019 Msa0442140:intron 50.0%
!! TTGGGTTTGGCTCTCCTCAT+GGG + chr3_3:11432001-11432020 Msa0442140:intron 50.0%
TTGAGAGTTGGACCACGGAA+AGG + chr3_3:11432051-11432070 Msa0442140:intron 50.0%
TGAGAGTTGGACCACGGAAA+GGG + chr3_3:11432052-11432071 Msa0442140:intron 50.0%
CTCTATTGACACTGACCCGA+TGG - chr3_3:11432152-11432171 None:intergenic 50.0%
TTCTTTGCGGCATCTGCATC+GGG - chr3_3:11433101-11433120 None:intergenic 50.0%
AACCTCCAATCCTTGCTCAG+GGG + chr3_3:11433121-11433140 Msa0442140:CDS 50.0%
ACACCCTTTCTGTCTCCAAC+CGG + chr3_3:11433154-11433173 Msa0442140:CDS 50.0%
CAATCCGGTTGGAGACAGAA+AGG - chr3_3:11433161-11433180 None:intergenic 50.0%
CTTTCTGTCTCCAACCGGAT+TGG + chr3_3:11433159-11433178 Msa0442140:CDS 50.0%
ACGAAACTTGCCAATCCGGT+TGG - chr3_3:11433172-11433191 None:intergenic 50.0%
GCTGACATAGCTGCTCAAGT+TGG + chr3_3:11433242-11433261 Msa0442140:CDS 50.0%
GTAGGCTCAACTACAAGCTG+TGG - chr3_3:11433275-11433294 None:intergenic 50.0%
! GAGTTAGACCGTGCATTGGT+AGG - chr3_3:11433293-11433312 None:intergenic 50.0%
GAAGGAGTTAGACCGTGCAT+TGG - chr3_3:11433297-11433316 None:intergenic 50.0%
TCGGAGAGCCTTAAGTTTCC+AGG + chr3_3:11433476-11433495 Msa0442140:CDS 50.0%
CCAGTTGAGGCCTTCAAAGA+AGG - chr3_3:11433612-11433631 None:intergenic 50.0%
! CCTTCTTTGAAGGCCTCAAC+TGG + chr3_3:11433609-11433628 Msa0442140:CDS 50.0%
! GCCTCAACTGGGCTCTAATA+CGG + chr3_3:11433621-11433640 Msa0442140:CDS 50.0%
ACCGTATTAGAGCCCAGTTG+AGG - chr3_3:11433625-11433644 None:intergenic 50.0%
! CTCCCCAAGTTTCGCGATTT+TGG + chr3_3:11433662-11433681 Msa0442140:CDS 50.0%
TCCATCTATGGCTGCACAGA+AGG + chr3_3:11433694-11433713 Msa0442140:CDS 50.0%
TCCTTCTGTGCAGCCATAGA+TGG - chr3_3:11433698-11433717 None:intergenic 50.0%
GTTTGTCCGTCTCAGGCTTC+TGG + chr3_3:11430317-11430336 Msa0442140:CDS 55.0%
CCGATTCCAGAAGCCTGAGA+CGG - chr3_3:11430326-11430345 None:intergenic 55.0%
!! CCGTCTCAGGCTTCTGGAAT+CGG + chr3_3:11430323-11430342 Msa0442140:CDS 55.0%
TGCTTGCCAGCTTCAACCTC+AGG - chr3_3:11430653-11430672 None:intergenic 55.0%
CAAGCAAACGCTACGAACCG+AGG + chr3_3:11430667-11430686 Msa0442140:CDS 55.0%
!! ACGAACCGAGGAAGTGCTAG+AGG + chr3_3:11430679-11430698 Msa0442140:CDS 55.0%
CTTAGTGGTTCGAGTCGCAG+TGG + chr3_3:11431229-11431248 Msa0442140:CDS 55.0%
CGTGCGATTCAACAGCAGCA+TGG + chr3_3:11431295-11431314 Msa0442140:CDS 55.0%
! GCTTTTCGGAGCAAGCAGCT+AGG + chr3_3:11431626-11431645 Msa0442140:CDS 55.0%
TTCGGAGCAAGCAGCTAGGT+AGG + chr3_3:11431630-11431649 Msa0442140:intron 55.0%
TCGGAGCAAGCAGCTAGGTA+GGG + chr3_3:11431631-11431650 Msa0442140:intron 55.0%
CCTATAGGTAGCCCTTTCCG+TGG - chr3_3:11432066-11432085 None:intergenic 55.0%
CCACGGAAAGGGCTACCTAT+AGG + chr3_3:11432063-11432082 Msa0442140:intron 55.0%
GGAAAGGGCTACCTATAGGC+TGG + chr3_3:11432067-11432086 Msa0442140:intron 55.0%
GGTGAGTGAAGCCGCCAAAA+AGG + chr3_3:11432117-11432136 Msa0442140:intron 55.0%
CAATAGAGTGAAAGCCGCCG+TGG + chr3_3:11432164-11432183 Msa0442140:intron 55.0%
! CCTTTAAGAGCCGACGTCCA+CGG - chr3_3:11432184-11432203 None:intergenic 55.0%
GCATCTGCATCGGGTGAAGA+TGG - chr3_3:11433092-11433111 None:intergenic 55.0%
ACTAGCCCCTGAGCAAGGAT+TGG - chr3_3:11433129-11433148 None:intergenic 55.0%
ATGCAACTAGCCCCTGAGCA+AGG - chr3_3:11433134-11433153 None:intergenic 55.0%
GCCCCGGGAGACAATAGAAT+AGG - chr3_3:11433203-11433222 None:intergenic 55.0%
GCACGGTCTAACTCCTTCGT+TGG + chr3_3:11433299-11433318 Msa0442140:CDS 55.0%
! CTGGGCTCTAATACGGTGTG+CGG + chr3_3:11433628-11433647 Msa0442140:CDS 55.0%
!! GGCTTCTGGAATCGGCATCG+CGG + chr3_3:11430331-11430350 Msa0442140:CDS 60.0%
AGCACATGCAGATCACCGCC+TGG - chr3_3:11431583-11431602 None:intergenic 60.0%
TTAAGAGCCGACGTCCACGG+CGG - chr3_3:11432181-11432200 None:intergenic 60.0%
!! CCGTGGACGTCGGCTCTTAA+AGG + chr3_3:11432181-11432200 Msa0442140:intron 60.0%
AGCCCCTGAGCAAGGATTGG+AGG - chr3_3:11433126-11433145 None:intergenic 60.0%
AATACGGTGTGCGGCACCAC+CGG + chr3_3:11433637-11433656 Msa0442140:CDS 60.0%
TCGCGAAACTTGGGGAGCTC+CGG - chr3_3:11433659-11433678 None:intergenic 60.0%
GTGAAAGCCGCCGTGGACGT+CGG + chr3_3:11432171-11432190 Msa0442140:intron 65.0%
CGAAACTTGGGGAGCTCCGG+TGG - chr3_3:11433656-11433675 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 11429064 11433967 11429064 ID=Msa0442140;Name=Msa0442140
chr3_3 mRNA 11429064 11433967 11429064 ID=Msa0442140-mRNA-1;Parent=Msa0442140;Name=Msa0442140-mRNA-1;_AED=0.02;_eAED=0.02;_QI=527|1|1|1|0.5|0.33|3|195|802
chr3_3 exon 11429064 11429416 11429064 ID=Msa0442140-mRNA-1:exon:2407;Parent=Msa0442140-mRNA-1
chr3_3 exon 11429915 11431647 11429915 ID=Msa0442140-mRNA-1:exon:2408;Parent=Msa0442140-mRNA-1
chr3_3 exon 11432923 11433967 11432923 ID=Msa0442140-mRNA-1:exon:2409;Parent=Msa0442140-mRNA-1
chr3_3 five_prime_UTR 11429064 11429416 11429064 ID=Msa0442140-mRNA-1:five_prime_utr;Parent=Msa0442140-mRNA-1
chr3_3 five_prime_UTR 11429915 11430088 11429915 ID=Msa0442140-mRNA-1:five_prime_utr;Parent=Msa0442140-mRNA-1
chr3_3 CDS 11430089 11431647 11430089 ID=Msa0442140-mRNA-1:cds;Parent=Msa0442140-mRNA-1
chr3_3 CDS 11432923 11433772 11432923 ID=Msa0442140-mRNA-1:cds;Parent=Msa0442140-mRNA-1
chr3_3 three_prime_UTR 11433773 11433967 11433773 ID=Msa0442140-mRNA-1:three_prime_utr;Parent=Msa0442140-mRNA-1
Gene Sequence

>Msa0442140

ATGAATGCATCTAGCAATACGTGTGAGATAGTGGAATACAGGGAAGAGATATTTCCCGAGTTCGAAACAGATGAAAAGCCTCAGAGTAGTTGTTCCTACAAATCAGGAAAAAGGTACTCGATTGAGGCTGATATTGATCGTCTTTTCAAGGCTATTGAGATTAAAAGTTCATCTAGAGGTCATAGTACTTCGCGGTCGCAACAGAGTTCTCTTAAAAGGCCGATTAAAGTTTGTCCGTCTCAGGCTTCTGGAATCGGCATCGCGGAGCCTGTTAGTTTAAAGCAGGCACTTAGAGGATTGTGCATCTCTCAGGCATCAGAAATGGCTGCATTGAAGAGAGTATCAAAGCAATGCAGCTCATCAAGAGTATCAGAGGTTGGCACGGTAAAGAAGTTGGTTGAAATCTCCCTAGTGCCAGAGATATCTACACTTTCCGGTAAATTTCCCGATGTAGCAATATCGAGTTCAAGTGCTAATCATTCTATTCCTGTGGTCAATGCAACAAGCTTAACAGAAATGACAACTAGGTTTGTGTCCCAAGATCAAATTGTTCCTCTTTCACCTGAGGTTGAAGCTGGCAAGCAAACGCTACGAACCGAGGAAGTGCTAGAGGTCAGAATGAATCCTGCTACGTCGAGTAAATCTTGTCTCAGTTCTTCAATGCCGGATAAGGACCGGGAGAAAAATTTTCATTGTGCATCTTGTCCACCTAGTTCTAGCAATGATAGTGGAGTGGGCAAAAACTCAAGCCTTAGCACATGTTTGGCAAAACCAATATTCAATAACATGAACTTCCTTAAGAAAAAGGTAAAGAAAGATCAATGTTCTGCCTCAAGCTGCGCTACTAGTAGTTTCAACAAGGAGAATGGAAATTCTGATCTTAAGCATGATATTAAAGAAAATGATGATAAACCATCTCCGTGCAGTTCAAATCATAGCATTGAAGTTAACTCAATTAATGTTAGTAGGGATTCAAGTAAACCTGGTTTTAGTTTGAATTTCAGTAAGAAAACTAAGTTTCTTGTTACAAAAGTTGACGAAAAATCAAGATCAAAGGAAAAGGGTGAGTTCTCTCAGAGCTCAAAAAGTAGCATGGGTGAGTATAGTACTAGTAGCACAAGTATCAGTGAAGAGAGCAATCTTAGTGGTTCGAGTCGCAGTGGCCAACGACCGCACATGTCAAAACACTCGAGATGGGAAGCTATTCGTGCGATTCAACAGCAGCATGGTAACCTAAATTTGAGGCACTTTAGACTGATAAGGAAGCTTGGTAGTGGAGACATTGGAACCGTTTATCTTGCAGAACTAATTGGTACTAGTTGCCTTTTTGCACTGAAAGTTATGGACAATGAATTTTTGGCTAGCAGGAAGAAAACATTTAGAGTTCAAACTGAAAGAGAGATCCTTCAAATGTTGGATCATCCATTTCTTCCTACACTATATTCCCATATTACTACGACTAAGCTCTCTTGCTTGGTTATGGAGTATTGTCCAGGCGGTGATCTGCATGTGCTGCGACAGAAGCAAACATACAGGAGCTTTTCGGAGCAAGCAGCTAGGTTTTATGTTGCTGAAGTTCTTCTTGCCCTTGAGTATTTGCACATGATGGGAGTTGTATATCGAGATCTAAAGCCGGAAAATATCCTAGTACGCGAAGATGGACATATTATGCTGACAGATTTTGACTTGTCACTCAGATGTTCTGTCAATCCAATGTTAGTCAAACCATCTTCACCCGATGCAGATGCCGCAAAGAAAACCTCCAATCCTTGCTCAGGGGCTAGTTGCATACACCCTTTCTGTCTCCAACCGGATTGGCAAGTTTCGTGCTTTGCTCCTATTCTATTGTCTCCCGGGGCAAAATCTCGAAAGATGAAGGCTGACATAGCTGCTCAAGTTGGTCCACTTCCACAGCTTGTAGTTGAGCCTACCAATGCACGGTCTAACTCCTTCGTTGGAACATATGAATATCTTGCTCCGGAGATCATCAAAAGTGAGGGACATGGAAACGCTGTAGATTGGTGGACTTTCGGTATATTTTTGTTTGAGCTTTTATATGGAAAGACTCCCTTCAAAGGTCCATCAAATGATGATACATTATCAAATGTTGTGTCGGAGAGCCTTAAGTTTCCAGGTACTCCTATAGTCAGTTTTCATGCAAGAGATTTGATCAGGGGATTGTTGATAAAGGATCCTGAAAATCGATTAGGTTCGATAAAAGGTGCTGCAGAAATAAAACAGCATCCCTTCTTTGAAGGCCTCAACTGGGCTCTAATACGGTGTGCGGCACCACCGGAGCTCCCCAAGTTTCGCGATTTTGGAACTAGTGCTCCATCTATGGCTGCACAGAAGGAGAATGCAAATGATTTAGAGGATATAGATGATTGTGAAGAGTTTGAGCTTTTTTAG
Protein sequence

>Msa0442140

MNASSNTCEIVEYREEIFPEFETDEKPQSSCSYKSGKRYSIEADIDRLFKAIEIKSSSRGHSTSRSQQSSLKRPIKVCPSQASGIGIAEPVSLKQALRGLCISQASEMAALKRVSKQCSSSRVSEVGTVKKLVEISLVPEISTLSGKFPDVAISSSSANHSIPVVNATSLTEMTTRFVSQDQIVPLSPEVEAGKQTLRTEEVLEVRMNPATSSKSCLSSSMPDKDREKNFHCASCPPSSSNDSGVGKNSSLSTCLAKPIFNNMNFLKKKVKKDQCSASSCATSSFNKENGNSDLKHDIKENDDKPSPCSSNHSIEVNSINVSRDSSKPGFSLNFSKKTKFLVTKVDEKSRSKEKGEFSQSSKSSMGEYSTSSTSISEESNLSGSSRSGQRPHMSKHSRWEAIRAIQQQHGNLNLRHFRLIRKLGSGDIGTVYLAELIGTSCLFALKVMDNEFLASRKKTFRVQTEREILQMLDHPFLPTLYSHITTTKLSCLVMEYCPGGDLHVLRQKQTYRSFSEQAARFYVAEVLLALEYLHMMGVVYRDLKPENILVREDGHIMLTDFDLSLRCSVNPMLVKPSSPDADAAKKTSNPCSGASCIHPFCLQPDWQVSCFAPILLSPGAKSRKMKADIAAQVGPLPQLVVEPTNARSNSFVGTYEYLAPEIIKSEGHGNAVDWWTFGIFLFELLYGKTPFKGPSNDDTLSNVVSESLKFPGTPIVSFHARDLIRGLLIKDPENRLGSIKGAAEIKQHPFFEGLNWALIRCAAPPELPKFRDFGTSAPSMAAQKENANDLEDIDDCEEFELF*