Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442330 | XP_013459055.1 | 92.593 | 378 | 24 | 1 | 11 | 384 | 16 | 393 | 0.0 | 715 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442330 | A0A072UVJ5 | 92.593 | 378 | 24 | 1 | 11 | 384 | 16 | 393 | 0.0 | 715 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0442330 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442330 | MtrunA17_Chr3g0086321 | 92.593 | 378 | 24 | 1 | 11 | 384 | 16 | 393 | 0.0 | 715 |
| Msa0442330 | MtrunA17_Chr5g0447971 | 69.432 | 229 | 70 | 0 | 156 | 384 | 304 | 532 | 3.77e-103 | 315 |
| Msa0442330 | MtrunA17_Chr5g0447971 | 68.966 | 145 | 36 | 1 | 46 | 190 | 53 | 188 | 5.61e-56 | 192 |
| Msa0442330 | MtrunA17_Chr5g0447971 | 31.602 | 231 | 114 | 9 | 156 | 378 | 240 | 434 | 9.45e-15 | 75.9 |
| Msa0442330 | MtrunA17_Chr5g0447971 | 29.457 | 129 | 69 | 3 | 113 | 220 | 397 | 524 | 7.19e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442330 | AT5G61190.10 | 30.412 | 194 | 104 | 4 | 189 | 382 | 240 | 402 | 9.89e-22 | 97.8 |
| Msa0442330 | AT5G61190.10 | 24.201 | 219 | 118 | 6 | 112 | 284 | 289 | 505 | 1.44e-12 | 69.7 |
| Msa0442330 | AT5G61190.10 | 24.296 | 284 | 165 | 9 | 119 | 374 | 242 | 503 | 4.41e-12 | 68.2 |
| Msa0442330 | AT5G61190.7 | 30.412 | 194 | 104 | 4 | 189 | 382 | 146 | 308 | 1.07e-21 | 97.8 |
| Msa0442330 | AT5G61190.7 | 24.215 | 223 | 113 | 7 | 112 | 284 | 195 | 411 | 1.91e-12 | 69.3 |
| Msa0442330 | AT5G61190.7 | 24.296 | 284 | 165 | 9 | 119 | 374 | 148 | 409 | 5.51e-12 | 68.2 |
| Msa0442330 | AT5G61190.3 | 30.412 | 194 | 104 | 4 | 189 | 382 | 146 | 308 | 1.07e-21 | 97.8 |
| Msa0442330 | AT5G61190.3 | 24.215 | 223 | 113 | 7 | 112 | 284 | 195 | 411 | 1.91e-12 | 69.3 |
| Msa0442330 | AT5G61190.3 | 24.296 | 284 | 165 | 9 | 119 | 374 | 148 | 409 | 5.51e-12 | 68.2 |
| Msa0442330 | AT5G61190.1 | 30.412 | 194 | 104 | 4 | 189 | 382 | 240 | 402 | 1.14e-21 | 97.8 |
| Msa0442330 | AT5G61190.1 | 25.118 | 211 | 118 | 6 | 112 | 284 | 289 | 497 | 1.89e-13 | 72.4 |
| Msa0442330 | AT5G61190.1 | 25.442 | 283 | 155 | 10 | 119 | 374 | 242 | 495 | 8.68e-13 | 70.5 |
| Msa0442330 | AT5G61190.11 | 30.412 | 194 | 104 | 4 | 189 | 382 | 240 | 402 | 1.35e-21 | 97.4 |
| Msa0442330 | AT5G61190.11 | 24.201 | 219 | 118 | 6 | 112 | 284 | 289 | 505 | 1.91e-12 | 69.3 |
| Msa0442330 | AT5G61190.11 | 24.296 | 284 | 165 | 9 | 119 | 374 | 242 | 503 | 4.65e-12 | 68.2 |
| Msa0442330 | AT5G61190.9 | 30.412 | 194 | 104 | 4 | 189 | 382 | 240 | 402 | 1.35e-21 | 97.4 |
| Msa0442330 | AT5G61190.9 | 24.201 | 219 | 118 | 6 | 112 | 284 | 289 | 505 | 1.91e-12 | 69.3 |
| Msa0442330 | AT5G61190.9 | 24.296 | 284 | 165 | 9 | 119 | 374 | 242 | 503 | 5.21e-12 | 68.2 |
| Msa0442330 | AT5G61190.6 | 30.412 | 194 | 104 | 4 | 189 | 382 | 240 | 402 | 1.36e-21 | 97.4 |
| Msa0442330 | AT5G61190.6 | 24.201 | 219 | 118 | 6 | 112 | 284 | 289 | 505 | 1.97e-12 | 69.3 |
| Msa0442330 | AT5G61190.6 | 24.296 | 284 | 165 | 9 | 119 | 374 | 242 | 503 | 5.28e-12 | 68.2 |
| Msa0442330 | AT5G61190.5 | 30.412 | 194 | 104 | 4 | 189 | 382 | 240 | 402 | 1.39e-21 | 97.4 |
| Msa0442330 | AT5G61190.5 | 24.201 | 219 | 118 | 6 | 112 | 284 | 289 | 505 | 2.11e-12 | 69.3 |
| Msa0442330 | AT5G61190.5 | 24.296 | 284 | 165 | 9 | 119 | 374 | 242 | 503 | 5.62e-12 | 68.2 |
| Msa0442330 | AT5G61190.8 | 30.412 | 194 | 104 | 4 | 189 | 382 | 240 | 402 | 2.29e-21 | 96.7 |
| Msa0442330 | AT5G61190.8 | 24.201 | 219 | 118 | 6 | 112 | 284 | 289 | 505 | 2.23e-12 | 69.3 |
| Msa0442330 | AT5G61190.8 | 22.776 | 281 | 173 | 7 | 119 | 374 | 242 | 503 | 4.74e-12 | 68.2 |
| Msa0442330 | AT5G61190.4 | 30.412 | 194 | 104 | 4 | 189 | 382 | 240 | 402 | 2.54e-21 | 96.3 |
| Msa0442330 | AT5G61190.4 | 24.201 | 219 | 118 | 6 | 112 | 284 | 289 | 505 | 2.19e-12 | 68.9 |
| Msa0442330 | AT5G61190.4 | 22.776 | 281 | 173 | 7 | 119 | 374 | 242 | 503 | 4.48e-12 | 68.2 |
| Msa0442330 | AT5G61190.2 | 30.412 | 194 | 104 | 4 | 189 | 382 | 240 | 402 | 2.54e-21 | 96.3 |
| Msa0442330 | AT5G61190.2 | 24.201 | 219 | 118 | 6 | 112 | 284 | 289 | 505 | 2.19e-12 | 68.9 |
| Msa0442330 | AT5G61190.2 | 22.776 | 281 | 173 | 7 | 119 | 374 | 242 | 503 | 4.48e-12 | 68.2 |
Find 109 sgRNAs with CRISPR-Local
Find 298 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACCATAGCAGCATGTTTC+TGG | 0.170828 | 3_3:-11861991 | None:intergenic |
| TCTGATGCCTTCTTTGGTTT+TGG | 0.255884 | 3_3:-11861842 | None:intergenic |
| ACATGGCCACCACAAATTTA+TGG | 0.268191 | 3_3:+11859482 | Msa0442330:CDS |
| ACTTATTACTGTTTGTGTTT+TGG | 0.270098 | 3_3:+11862171 | Msa0442330:three_prime_UTR |
| TCAAGTTCTGATGCCTTCTT+TGG | 0.274301 | 3_3:-11861848 | None:intergenic |
| ACCGCAACAAATACTTTAAT+CGG | 0.278525 | 3_3:+11861791 | Msa0442330:CDS |
| ATGCAGTTTGTCATTGCTTA+TGG | 0.315656 | 3_3:+11862091 | Msa0442330:three_prime_UTR |
| CGCTTGAATTCGGCAATAGA+TGG | 0.316684 | 3_3:-11861572 | None:intergenic |
| TTGTTGTTGAGGGTACATTT+TGG | 0.325588 | 3_3:-11857604 | None:intergenic |
| GTTCCTGTAACACAAGTAAA+AGG | 0.331034 | 3_3:-11862150 | None:intergenic |
| GCAGAATCAACCTGTTTCTT+AGG | 0.337690 | 3_3:-11859746 | None:intergenic |
| TGGGAGGTGTAAAGAGAAAC+AGG | 0.338861 | 3_3:-11857750 | None:intergenic |
| GTTCTTCAAGTGTTTCTTAC+CGG | 0.356623 | 3_3:-11861711 | None:intergenic |
| ACAAATTGGGTAAGAATTCA+TGG | 0.359847 | 3_3:-11857454 | None:intergenic |
| AACACCGTTACGCTTGAATT+CGG | 0.361255 | 3_3:-11861582 | None:intergenic |
| AAGCTTTGGTGACTTTGGTT+TGG | 0.371601 | 3_3:-11859532 | None:intergenic |
| ATACAAGGACAAGGGTTAAT+TGG | 0.382675 | 3_3:+11859701 | Msa0442330:CDS |
| CACGCAGAAGGTAAACTTGC+AGG | 0.393751 | 3_3:-11859452 | None:intergenic |
| AACCAACAGATTATCACAAT+TGG | 0.400223 | 3_3:+11857772 | Msa0442330:CDS |
| GGAGGATGAAGTGAAGGATC+AGG | 0.403946 | 3_3:-11857687 | None:intergenic |
| GCAATCCGAGCCTAAGAAAC+AGG | 0.404268 | 3_3:+11859736 | Msa0442330:CDS |
| TCTCAAAGCTTTGGTGACTT+TGG | 0.404347 | 3_3:-11859537 | None:intergenic |
| TAAAGTATTTGTTGCGGTGG+CGG | 0.415658 | 3_3:-11861786 | None:intergenic |
| GCATATATCAAACATCTTGC+TGG | 0.416947 | 3_3:+11859812 | Msa0442330:CDS |
| CACTTCACATCTCAAAGCTT+TGG | 0.420423 | 3_3:-11859546 | None:intergenic |
| TGTAAAGTTGTGAATCAAAA+GGG | 0.423591 | 3_3:-11857532 | None:intergenic |
| TTGTTGTTGCTGGAAATTGT+AGG | 0.427790 | 3_3:-11857640 | None:intergenic |
| TGTTATCTAGACTTGGAGAC+AGG | 0.439144 | 3_3:+11862057 | Msa0442330:three_prime_UTR |
| GCAAGATTAATTGTAACAGC+AGG | 0.443520 | 3_3:+11861666 | Msa0442330:CDS |
| GTTGCCTTGATGTCTAATAA+TGG | 0.452518 | 3_3:+11861542 | Msa0442330:CDS |
| TGGGAGAAAGCATGCTGCTC+AGG | 0.459949 | 3_3:+11859832 | Msa0442330:CDS |
| ATCAACCTGTTTCTTAGGCT+CGG | 0.472485 | 3_3:-11859741 | None:intergenic |
| GGTGAAAATTGAAAACTGTC+TGG | 0.474169 | 3_3:-11861961 | None:intergenic |
| GTCTCGTTGCCATAAATTTG+TGG | 0.477870 | 3_3:-11859491 | None:intergenic |
| CTTCTAATATTGCAGGCTGT+TGG | 0.480500 | 3_3:+11859404 | Msa0442330:intron |
| GAGCTTGGTATTGTTGTTGA+GGG | 0.489208 | 3_3:-11857614 | None:intergenic |
| GGCTCGGATTGCTTGACTAC+GGG | 0.489539 | 3_3:-11859725 | None:intergenic |
| AGTATTTGTTGCGGTGGCGG+TGG | 0.490137 | 3_3:-11861783 | None:intergenic |
| TTTGCAAGTGGGTCAGTGCC+AGG | 0.495030 | 3_3:-11857708 | None:intergenic |
| GTGTAAAGTTGTGAATCAAA+AGG | 0.500025 | 3_3:-11857533 | None:intergenic |
| TGAGCTTGGTATTGTTGTTG+AGG | 0.503622 | 3_3:-11857615 | None:intergenic |
| TTGGTGACTTTGGTTTGGTT+AGG | 0.506602 | 3_3:-11859527 | None:intergenic |
| CATATATCAAACATCTTGCT+GGG | 0.508931 | 3_3:+11859813 | Msa0442330:CDS |
| AGGCTCGGATTGCTTGACTA+CGG | 0.513657 | 3_3:-11859726 | None:intergenic |
| GAAGGAGGAGCTGCAGTTGA+TGG | 0.516170 | 3_3:+11861899 | Msa0442330:CDS |
| AAGAAGGCAGGGTCAGTCAC+TGG | 0.516327 | 3_3:+11862013 | Msa0442330:CDS |
| TATCTGATGGGTTCAGATTG+AGG | 0.517150 | 3_3:-11857801 | None:intergenic |
| TGTTGTTGCTGGAAATTGTA+GGG | 0.518373 | 3_3:-11857639 | None:intergenic |
| GTTTAATTGCTAAGTGGTAG+AGG | 0.519708 | 3_3:+11862243 | Msa0442330:three_prime_UTR |
| TCTTATGAAAGTCACATAGC+TGG | 0.520481 | 3_3:+11859596 | Msa0442330:CDS |
| TTGTAAACCTCAATGCATCA+TGG | 0.520640 | 3_3:-11862215 | None:intergenic |
| GAATTCAAGCGTAACGGTGT+TGG | 0.521387 | 3_3:+11861584 | Msa0442330:CDS |
| GATCCTTCACTTCATCCTCC+TGG | 0.522615 | 3_3:+11857690 | Msa0442330:CDS |
| ACATGCTGCTATGGTGAAGA+AGG | 0.523999 | 3_3:+11861997 | Msa0442330:CDS |
| AATTGTGATAATCTGTTGGT+TGG | 0.524110 | 3_3:-11857770 | None:intergenic |
| TTCGCATGAGATGTAATAGT+AGG | 0.525742 | 3_3:-11859656 | None:intergenic |
| CGATCAACCAAAACCAAAGA+AGG | 0.528394 | 3_3:+11861835 | Msa0442330:CDS |
| GTCATTGTGTTATCTAGACT+TGG | 0.528868 | 3_3:+11862050 | Msa0442330:three_prime_UTR |
| AATGCCATTATTAGACATCA+AGG | 0.532248 | 3_3:-11861546 | None:intergenic |
| GCAGGGTCAGTCACTGGCTG+AGG | 0.532286 | 3_3:+11862019 | Msa0442330:CDS |
| CAAATTGGGTAAGAATTCAT+GGG | 0.534818 | 3_3:-11857453 | None:intergenic |
| CTTCTGCGTGGAATGGTACA+TGG | 0.535273 | 3_3:+11859465 | Msa0442330:CDS |
| GCTTGAATTCGGCAATAGAT+GGG | 0.537412 | 3_3:-11861571 | None:intergenic |
| GCTGCTATGGTGAAGAAGGC+AGG | 0.537781 | 3_3:+11862001 | Msa0442330:CDS |
| ATTGTGATAATCTGTTGGTT+GGG | 0.539629 | 3_3:-11857769 | None:intergenic |
| CCGCAACAAATACTTTAATC+GGG | 0.541756 | 3_3:+11861792 | Msa0442330:CDS |
| CAGCATGTTTCTGGCCAACA+AGG | 0.542850 | 3_3:-11861982 | None:intergenic |
| AAATGAGTTTAATTGCTAAG+TGG | 0.543494 | 3_3:+11862237 | Msa0442330:three_prime_UTR |
| ACTTACAAGATCATATCTGA+TGG | 0.547707 | 3_3:-11857814 | None:intergenic |
| TAAGAAACACTTGAAGAACT+TGG | 0.549430 | 3_3:+11861715 | Msa0442330:CDS |
| ATCTACATTACACACTTAGC+CGG | 0.550310 | 3_3:+11861692 | Msa0442330:CDS |
| AGTTTACCTTCTGCGTGGAA+TGG | 0.550393 | 3_3:+11859458 | Msa0442330:CDS |
| CAAGATTAATTGTAACAGCA+GGG | 0.550872 | 3_3:+11861667 | Msa0442330:CDS |
| AAAAGCTGCCAAGAAAATCA+AGG | 0.552640 | 3_3:+11861616 | Msa0442330:CDS |
| AAAATCGATGTCGGCACTAG+TGG | 0.557209 | 3_3:+11861755 | Msa0442330:CDS |
| CCCGATTAAAGTATTTGTTG+CGG | 0.558626 | 3_3:-11861792 | None:intergenic |
| TTGATGTCTAATAATGGCAT+TGG | 0.569058 | 3_3:+11861548 | Msa0442330:CDS |
| GTGATAATCTGTTGGTTGGG+AGG | 0.571099 | 3_3:-11857766 | None:intergenic |
| GTCAAAGAAACGTAAAGTTG+TGG | 0.571297 | 3_3:+11861877 | Msa0442330:CDS |
| GTAAAGTTGTGAATCAAAAG+GGG | 0.574785 | 3_3:-11857531 | None:intergenic |
| ATAACTTCCATGATGCATTG+AGG | 0.576340 | 3_3:+11862208 | Msa0442330:three_prime_UTR |
| TTTAATTGCTAAGTGGTAGA+GGG | 0.576975 | 3_3:+11862244 | Msa0442330:three_prime_UTR |
| GAAACAGGTTGATTCTGCAA+CGG | 0.579888 | 3_3:+11859751 | Msa0442330:CDS |
| ATCCAATTGTGATAATCTGT+TGG | 0.584557 | 3_3:-11857774 | None:intergenic |
| TCAAGGTTGCTCAGTCTGCA+TGG | 0.588753 | 3_3:+11861633 | Msa0442330:CDS |
| GATTAAAGTATTTGTTGCGG+TGG | 0.590642 | 3_3:-11861789 | None:intergenic |
| GGAAATTGTAGGGTTGAGCT+TGG | 0.593362 | 3_3:-11857629 | None:intergenic |
| GTGCCAGGAGGATGAAGTGA+AGG | 0.595047 | 3_3:-11857693 | None:intergenic |
| ACTGACACAAGTAGTATACA+AGG | 0.597057 | 3_3:+11859686 | Msa0442330:CDS |
| TGGCCAGAAACATGCTGCTA+TGG | 0.598112 | 3_3:+11861988 | Msa0442330:CDS |
| ATCGGGCCACAAGAAAAGCC+AGG | 0.598973 | 3_3:+11861809 | Msa0442330:CDS |
| CATGTACCATTCCACGCAGA+AGG | 0.601401 | 3_3:-11859464 | None:intergenic |
| GAGGATGAAGTGAAGGATCA+GGG | 0.602017 | 3_3:-11857686 | None:intergenic |
| GTTATCTAGACTTGGAGACA+GGG | 0.612409 | 3_3:+11862058 | Msa0442330:three_prime_UTR |
| CTGCTATGGTGAAGAAGGCA+GGG | 0.613128 | 3_3:+11862002 | Msa0442330:CDS |
| CTTACAAGATCATATCTGAT+GGG | 0.617080 | 3_3:-11857813 | None:intergenic |
| AAGAAACGTAAAGTTGTGGA+AGG | 0.617548 | 3_3:+11861881 | Msa0442330:CDS |
| AAAGATGTTGAATTTGCAAG+TGG | 0.619628 | 3_3:-11857720 | None:intergenic |
| AAACGTAAAGTTGTGGAAGG+AGG | 0.636655 | 3_3:+11861884 | Msa0442330:CDS |
| TCGTTGCCATAAATTTGTGG+TGG | 0.644262 | 3_3:-11859488 | None:intergenic |
| AAGATGTTGAATTTGCAAGT+GGG | 0.649561 | 3_3:-11857719 | None:intergenic |
| ACAAGTAGTATACAAGGACA+AGG | 0.651454 | 3_3:+11859692 | Msa0442330:CDS |
| CTGCAAGTTTACCTTCTGCG+TGG | 0.655416 | 3_3:+11859453 | Msa0442330:CDS |
| TAAAGTTGTGAATCAAAAGG+GGG | 0.684433 | 3_3:-11857530 | None:intergenic |
| ATTGCCGAATTCAAGCGTAA+CGG | 0.711887 | 3_3:+11861578 | Msa0442330:CDS |
| GCAAGTGGGTCAGTGCCAGG+AGG | 0.726366 | 3_3:-11857705 | None:intergenic |
| CAAGTAGTATACAAGGACAA+GGG | 0.731447 | 3_3:+11859693 | Msa0442330:CDS |
| AATGTGCACATTATGCAATG+TGG | 0.739375 | 3_3:+11861928 | Msa0442330:CDS |
| GAGGTGTAAAGAGAAACAGG+AGG | 0.817855 | 3_3:-11857747 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAACATTTTTTAAAAATG+TGG | + | chr3_3:11859164-11859183 | Msa0442330:intron | 10.0% |
| !! | AAGAAAAAAATCAACAAATT+GGG | - | chr3_3:11857470-11857489 | None:intergenic | 15.0% |
| !! | AAAGAAAAAAATCAACAAAT+TGG | - | chr3_3:11857471-11857490 | None:intergenic | 15.0% |
| !!! | ATAATTAGGGTTTTTAAAAT+GGG | + | chr3_3:11858509-11858528 | Msa0442330:intron | 15.0% |
| !! | TAATACAAATAATTGTCAAA+TGG | + | chr3_3:11858725-11858744 | Msa0442330:intron | 15.0% |
| !! | TAATACAAATAATTGTCAAA+TGG | + | chr3_3:11858725-11858744 | Msa0442330:intron | 15.0% |
| !! | TCATATATTGTAAATAGAAT+TGG | + | chr3_3:11859246-11859265 | Msa0442330:intron | 15.0% |
| !! | AAAAGTGAGAATAATAAAAT+AGG | + | chr3_3:11859291-11859310 | Msa0442330:intron | 15.0% |
| !! | AAAGTGAGAATAATAAAATA+GGG | + | chr3_3:11859292-11859311 | Msa0442330:intron | 15.0% |
| !! | AATATTAAAAGGATGAAAAT+TGG | + | chr3_3:11860044-11860063 | Msa0442330:intron | 15.0% |
| !! | TCCAATTAAGATAAAAATAA+CGG | - | chr3_3:11860110-11860129 | None:intergenic | 15.0% |
| !! | TATAATATCAATTGTTAATC+AGG | + | chr3_3:11860713-11860732 | Msa0442330:intron | 15.0% |
| !! | TGATAAATAAATATCATATG+TGG | + | chr3_3:11861144-11861163 | Msa0442330:intron | 15.0% |
| !!! | ATTAAGTAAAAATAGTCTTT+TGG | + | chr3_3:11861190-11861209 | Msa0442330:intron | 15.0% |
| !!! | TTAAGTAAAAATAGTCTTTT+GGG | + | chr3_3:11861191-11861210 | Msa0442330:intron | 15.0% |
| !! | TTCAAAAACAACAATCAAAA+GGG | - | chr3_3:11857848-11857867 | None:intergenic | 20.0% |
| !! | ATTCAAAAACAACAATCAAA+AGG | - | chr3_3:11857849-11857868 | None:intergenic | 20.0% |
| !!! | TTTTCTTATGTTTTTTCATC+TGG | + | chr3_3:11857887-11857906 | Msa0442330:intron | 20.0% |
| !!! | TTTCTTATGTTTTTTCATCT+GGG | + | chr3_3:11857888-11857907 | Msa0442330:intron | 20.0% |
| !! | TATGAAAACTAAGAACAAAA+GGG | - | chr3_3:11858043-11858062 | None:intergenic | 20.0% |
| !! | ATATGAAAACTAAGAACAAA+AGG | - | chr3_3:11858044-11858063 | None:intergenic | 20.0% |
| !!! | TTTTCTTATGTTTTGTCATT+TGG | + | chr3_3:11858082-11858101 | Msa0442330:intron | 20.0% |
| !!! | TTTCTTATGTTTTGTCATTT+GGG | + | chr3_3:11858083-11858102 | Msa0442330:intron | 20.0% |
| !!! | CTTAATTAAGGTCTTTAAAA+TGG | + | chr3_3:11858272-11858291 | Msa0442330:intron | 20.0% |
| !!! | CATAATTAGGGTTTTTAAAA+TGG | + | chr3_3:11858508-11858527 | Msa0442330:intron | 20.0% |
| !! | ATTGTCTACAATATAGAATA+AGG | - | chr3_3:11859928-11859947 | None:intergenic | 20.0% |
| !!! | ACCGTTATTTTTATCTTAAT+TGG | + | chr3_3:11860106-11860125 | Msa0442330:intron | 20.0% |
| !!! | GGTTTTTAAAAGTTGAAAAA+AGG | - | chr3_3:11860799-11860818 | None:intergenic | 20.0% |
| !!! | GAATAAGTTGAATACAATAA+TGG | - | chr3_3:11860944-11860963 | None:intergenic | 20.0% |
| !! | CAAAATAAATAAAGAACAAG+TGG | - | chr3_3:11861021-11861040 | None:intergenic | 20.0% |
| !! | AAAAAATACTTGTTTGTTCA+AGG | - | chr3_3:11861294-11861313 | None:intergenic | 20.0% |
| !! | TTATCTATAGATATACATCA+AGG | - | chr3_3:11861385-11861404 | None:intergenic | 20.0% |
| ! | TGTAAAGTTGTGAATCAAAA+GGG | - | chr3_3:11857535-11857554 | None:intergenic | 25.0% |
| !!! | TTCATTTTAACGTAGTTGTT+TGG | + | chr3_3:11857992-11858011 | Msa0442330:intron | 25.0% |
| !!! | TTCTTATGTTTTGTCATTTG+GGG | + | chr3_3:11858084-11858103 | Msa0442330:intron | 25.0% |
| !!! | TTTTGTTGTAGCATTAGTTT+TGG | + | chr3_3:11858190-11858209 | Msa0442330:intron | 25.0% |
| ! | GTTGGAATTCATCTTAATTA+AGG | + | chr3_3:11858260-11858279 | Msa0442330:intron | 25.0% |
| !!! | TCATAGTTAGAGTTTTAAGA+TGG | + | chr3_3:11858316-11858335 | Msa0442330:intron | 25.0% |
| !! | TCGTAATTAGGGTTTTTAAA+TGG | + | chr3_3:11858412-11858431 | Msa0442330:intron | 25.0% |
| ! | TACAAATAATTGTCAAATGG+TGG | + | chr3_3:11858728-11858747 | Msa0442330:intron | 25.0% |
| !!! | TCGTTTCTTTTTTGTTAATG+TGG | + | chr3_3:11858918-11858937 | Msa0442330:intron | 25.0% |
| ! | TACAAATAATTGTCAAATGG+TGG | + | chr3_3:11858728-11858747 | Msa0442330:intron | 25.0% |
| ! | GATATCTATATTGTCCTATT+CGG | - | chr3_3:11859057-11859076 | None:intergenic | 25.0% |
| ! | ATAGGACAATATAGATATCA+TGG | + | chr3_3:11859058-11859077 | Msa0442330:intron | 25.0% |
| ! | AATTCAAAACCCTAACATAA+GGG | - | chr3_3:11859341-11859360 | None:intergenic | 25.0% |
| ! | AAATTCAAAACCCTAACATA+AGG | - | chr3_3:11859342-11859361 | None:intergenic | 25.0% |
| !!! | GTTAGGGTTTTGAATTTTAT+TGG | + | chr3_3:11859345-11859364 | Msa0442330:intron | 25.0% |
| ! | GACAGAACAAGAATATTAAA+AGG | + | chr3_3:11860033-11860052 | Msa0442330:intron | 25.0% |
| ! | CTACAGAGTTAATTAGTAAA+TGG | - | chr3_3:11860184-11860203 | None:intergenic | 25.0% |
| ! | CATTTACTAATTAACTCTGT+AGG | + | chr3_3:11860182-11860201 | Msa0442330:intron | 25.0% |
| !!! | TTACATGCATTTTAGCTAAA+TGG | - | chr3_3:11860208-11860227 | None:intergenic | 25.0% |
| !! | AACAACAATAGTCTTTTAGT+AGG | + | chr3_3:11860657-11860676 | Msa0442330:intron | 25.0% |
| ! | TGTTTCAAAGAAATGAAGTT+TGG | - | chr3_3:11861108-11861127 | None:intergenic | 25.0% |
| ! | ACAAATAAAATGAGCAACTT+GGG | - | chr3_3:11861444-11861463 | None:intergenic | 25.0% |
| ! | AACAAATAAAATGAGCAACT+TGG | - | chr3_3:11861445-11861464 | None:intergenic | 25.0% |
| !! | ACTTATTACTGTTTGTGTTT+TGG | + | chr3_3:11862171-11862190 | Msa0442330:three_prime_UTR | 25.0% |
| ! | AAATGAGTTTAATTGCTAAG+TGG | + | chr3_3:11862237-11862256 | Msa0442330:three_prime_UTR | 25.0% |
| CAAATTGGGTAAGAATTCAT+GGG | - | chr3_3:11857456-11857475 | None:intergenic | 30.0% | |
| ACAAATTGGGTAAGAATTCA+TGG | - | chr3_3:11857457-11857476 | None:intergenic | 30.0% | |
| TAAAGTTGTGAATCAAAAGG+GGG | - | chr3_3:11857533-11857552 | None:intergenic | 30.0% | |
| GTAAAGTTGTGAATCAAAAG+GGG | - | chr3_3:11857534-11857553 | None:intergenic | 30.0% | |
| GTGTAAAGTTGTGAATCAAA+AGG | - | chr3_3:11857536-11857555 | None:intergenic | 30.0% | |
| AAGATGTTGAATTTGCAAGT+GGG | - | chr3_3:11857722-11857741 | None:intergenic | 30.0% | |
| AAAGATGTTGAATTTGCAAG+TGG | - | chr3_3:11857723-11857742 | None:intergenic | 30.0% | |
| ! | ATTGTGATAATCTGTTGGTT+GGG | - | chr3_3:11857772-11857791 | None:intergenic | 30.0% |
| AATTGTGATAATCTGTTGGT+TGG | - | chr3_3:11857773-11857792 | None:intergenic | 30.0% | |
| AACCAACAGATTATCACAAT+TGG | + | chr3_3:11857772-11857791 | Msa0442330:CDS | 30.0% | |
| ATCCAATTGTGATAATCTGT+TGG | - | chr3_3:11857777-11857796 | None:intergenic | 30.0% | |
| CTTACAAGATCATATCTGAT+GGG | - | chr3_3:11857816-11857835 | None:intergenic | 30.0% | |
| ACTTACAAGATCATATCTGA+TGG | - | chr3_3:11857817-11857836 | None:intergenic | 30.0% | |
| TAATGTGAAGTTCTGTTAAG+TGG | + | chr3_3:11858235-11858254 | Msa0442330:intron | 30.0% | |
| AATGTGAAGTTCTGTTAAGT+GGG | + | chr3_3:11858236-11858255 | Msa0442330:intron | 30.0% | |
| TGATTAGGGTTGCAAAATAA+AGG | + | chr3_3:11858465-11858484 | Msa0442330:intron | 30.0% | |
| ATGGTGTGATTGTCATAATT+AGG | + | chr3_3:11858495-11858514 | Msa0442330:intron | 30.0% | |
| TGGTGTGATTGTCATAATTA+GGG | + | chr3_3:11858496-11858515 | Msa0442330:intron | 30.0% | |
| CAACACTGAATAGTACAATA+TGG | + | chr3_3:11858803-11858822 | Msa0442330:intron | 30.0% | |
| AAAAAGAAACGACATACAAG+TGG | - | chr3_3:11858910-11858929 | None:intergenic | 30.0% | |
| AAGATGAATGATGATAGTCA+GGG | + | chr3_3:11859191-11859210 | Msa0442330:intron | 30.0% | |
| GTGAGAATAATAAAATAGGG+AGG | + | chr3_3:11859295-11859314 | Msa0442330:intron | 30.0% | |
| ! | TTGATTTGATCCCTTATGTT+AGG | + | chr3_3:11859328-11859347 | Msa0442330:intron | 30.0% |
| TGATTTGATCCCTTATGTTA+GGG | + | chr3_3:11859329-11859348 | Msa0442330:intron | 30.0% | |
| TTCAATGCTTCTAATATTGC+AGG | + | chr3_3:11859397-11859416 | Msa0442330:intron | 30.0% | |
| CATATATCAAACATCTTGCT+GGG | + | chr3_3:11859813-11859832 | Msa0442330:CDS | 30.0% | |
| GTTGCATGTAATCTTACAAA+AGG | - | chr3_3:11859878-11859897 | None:intergenic | 30.0% | |
| GTTTAGCTAATTAACACTGT+AGG | + | chr3_3:11860158-11860177 | Msa0442330:intron | 30.0% | |
| TAAAATGCATGTAAGATAGC+TGG | + | chr3_3:11860214-11860233 | Msa0442330:intron | 30.0% | |
| GTATGAAAATAAGAGAACCA+TGG | - | chr3_3:11860330-11860349 | None:intergenic | 30.0% | |
| !! | GGAAATAAAAAGTGTTCTTC+TGG | + | chr3_3:11860406-11860425 | Msa0442330:intron | 30.0% |
| AACACAACACTAAACTCATT+TGG | - | chr3_3:11860472-11860491 | None:intergenic | 30.0% | |
| TTTAGTAGGAGTAGATTACA+TGG | + | chr3_3:11860671-11860690 | Msa0442330:intron | 30.0% | |
| ATAATTCAGGGATAACAGAA+GGG | + | chr3_3:11860741-11860760 | Msa0442330:intron | 30.0% | |
| !! | CAACTTTTAAAAACCATTGC+CGG | + | chr3_3:11860804-11860823 | Msa0442330:intron | 30.0% |
| TGCTTAGAAATTCTGTACTT+CGG | + | chr3_3:11861080-11861099 | Msa0442330:intron | 30.0% | |
| !! | TAATTTTGACGACAACAATG+AGG | + | chr3_3:11861218-11861237 | Msa0442330:intron | 30.0% |
| AACAATGAGGACCTTATATA+CGG | + | chr3_3:11861231-11861250 | Msa0442330:intron | 30.0% | |
| CAAATAAAATGAGCAACTTG+GGG | - | chr3_3:11861443-11861462 | None:intergenic | 30.0% | |
| ACTCAGAAACATTCAACTAA+TGG | - | chr3_3:11861499-11861518 | None:intergenic | 30.0% | |
| AATGCCATTATTAGACATCA+AGG | - | chr3_3:11861549-11861568 | None:intergenic | 30.0% | |
| TTGATGTCTAATAATGGCAT+TGG | + | chr3_3:11861548-11861567 | Msa0442330:CDS | 30.0% | |
| CAAGATTAATTGTAACAGCA+GGG | + | chr3_3:11861667-11861686 | Msa0442330:CDS | 30.0% | |
| TAAGAAACACTTGAAGAACT+TGG | + | chr3_3:11861715-11861734 | Msa0442330:CDS | 30.0% | |
| TCAAATCCAAAAATCGATGT+CGG | + | chr3_3:11861746-11861765 | Msa0442330:CDS | 30.0% | |
| ACCGCAACAAATACTTTAAT+CGG | + | chr3_3:11861791-11861810 | Msa0442330:CDS | 30.0% | |
| ! | GTTTTCAATTTTCACCTTGT+TGG | + | chr3_3:11861968-11861987 | Msa0442330:CDS | 30.0% |
| TTTAATTGCTAAGTGGTAGA+GGG | + | chr3_3:11862244-11862263 | Msa0442330:three_prime_UTR | 30.0% | |
| !!! | TTGAGGGTACATTTTGGTTT+TGG | - | chr3_3:11857601-11857620 | None:intergenic | 35.0% |
| !! | TTGTTGTTGAGGGTACATTT+TGG | - | chr3_3:11857607-11857626 | None:intergenic | 35.0% |
| TGTTGTTGCTGGAAATTGTA+GGG | - | chr3_3:11857642-11857661 | None:intergenic | 35.0% | |
| ! | TTGTTGTTGCTGGAAATTGT+AGG | - | chr3_3:11857643-11857662 | None:intergenic | 35.0% |
| AAAATGGACATGATTGTGTG+TGG | + | chr3_3:11858288-11858307 | Msa0442330:intron | 35.0% | |
| AAATGGACATGATTGTGTGT+GGG | + | chr3_3:11858289-11858308 | Msa0442330:intron | 35.0% | |
| ATTCATGGTTCGCAAATGAA+AGG | + | chr3_3:11858370-11858389 | Msa0442330:intron | 35.0% | |
| ATGGCGTGATTATCGTAATT+AGG | + | chr3_3:11858400-11858419 | Msa0442330:intron | 35.0% | |
| TGGCGTGATTATCGTAATTA+GGG | + | chr3_3:11858401-11858420 | Msa0442330:intron | 35.0% | |
| ATGGAAAGATATCGCAATTC+TGG | + | chr3_3:11858431-11858450 | Msa0442330:intron | 35.0% | |
| CTATTCAGTGTTGTCAGTAA+CGG | - | chr3_3:11858796-11858815 | None:intergenic | 35.0% | |
| !! | TATTCGGTGTTGTCAATAAC+GGG | - | chr3_3:11859041-11859060 | None:intergenic | 35.0% |
| !! | CTATTCGGTGTTGTCAATAA+CGG | - | chr3_3:11859042-11859061 | None:intergenic | 35.0% |
| GAAGATGAATGATGATAGTC+AGG | + | chr3_3:11859190-11859209 | Msa0442330:intron | 35.0% | |
| TCTTATGAAAGTCACATAGC+TGG | + | chr3_3:11859596-11859615 | Msa0442330:CDS | 35.0% | |
| TTCGCATGAGATGTAATAGT+AGG | - | chr3_3:11859659-11859678 | None:intergenic | 35.0% | |
| ACTGACACAAGTAGTATACA+AGG | + | chr3_3:11859686-11859705 | Msa0442330:CDS | 35.0% | |
| ACAAGTAGTATACAAGGACA+AGG | + | chr3_3:11859692-11859711 | Msa0442330:CDS | 35.0% | |
| CAAGTAGTATACAAGGACAA+GGG | + | chr3_3:11859693-11859712 | Msa0442330:CDS | 35.0% | |
| ATACAAGGACAAGGGTTAAT+TGG | + | chr3_3:11859701-11859720 | Msa0442330:CDS | 35.0% | |
| GCATATATCAAACATCTTGC+TGG | + | chr3_3:11859812-11859831 | Msa0442330:CDS | 35.0% | |
| ACATAATGCACACACTTGTA+TGG | + | chr3_3:11859966-11859985 | Msa0442330:intron | 35.0% | |
| TGTACCTATTCTCTTGTTCA+TGG | + | chr3_3:11860074-11860093 | Msa0442330:intron | 35.0% | |
| AGAACCATGAACAAGAGAAT+AGG | - | chr3_3:11860081-11860100 | None:intergenic | 35.0% | |
| TTATCTTAATTGGACCCACA+AGG | + | chr3_3:11860116-11860135 | Msa0442330:intron | 35.0% | |
| ! | TTGTGGCTTTTGCAAAATCA+CGG | - | chr3_3:11860289-11860308 | None:intergenic | 35.0% |
| ! | CAAAAGCCACAAAGTGATTT+TGG | + | chr3_3:11860297-11860316 | Msa0442330:intron | 35.0% |
| GAAAATAAGAGAACCATGGT+GGG | - | chr3_3:11860326-11860345 | None:intergenic | 35.0% | |
| TGAAAATAAGAGAACCATGG+TGG | - | chr3_3:11860327-11860346 | None:intergenic | 35.0% | |
| ! | TTTTTCGCAGTGGATAAGTA+AGG | - | chr3_3:11860380-11860399 | None:intergenic | 35.0% |
| AGATGAAGACAGGCTATAAA+TGG | + | chr3_3:11860429-11860448 | Msa0442330:intron | 35.0% | |
| !!! | CTATAAATGGAGGGCATTTT+GGG | + | chr3_3:11860442-11860461 | Msa0442330:intron | 35.0% |
| TAATCAGGTCTCCATAATTC+AGG | + | chr3_3:11860728-11860747 | Msa0442330:intron | 35.0% | |
| AATCAGGTCTCCATAATTCA+GGG | + | chr3_3:11860729-11860748 | Msa0442330:intron | 35.0% | |
| CTTCTGTTATCCCTGAATTA+TGG | - | chr3_3:11860742-11860761 | None:intergenic | 35.0% | |
| CATAATTCAGGGATAACAGA+AGG | + | chr3_3:11860740-11860759 | Msa0442330:intron | 35.0% | |
| GCTTAGAAATTCTGTACTTC+GGG | + | chr3_3:11861081-11861100 | Msa0442330:intron | 35.0% | |
| !!! | TATTTTTTGCGATCCACGAT+TGG | + | chr3_3:11861306-11861325 | Msa0442330:intron | 35.0% |
| GTTGCCTTGATGTCTAATAA+TGG | + | chr3_3:11861542-11861561 | Msa0442330:CDS | 35.0% | |
| !! | TTCTTGGCAGCTTTTTGAAA+TGG | - | chr3_3:11861611-11861630 | None:intergenic | 35.0% |
| AAAAGCTGCCAAGAAAATCA+AGG | + | chr3_3:11861616-11861635 | Msa0442330:CDS | 35.0% | |
| GCAAGATTAATTGTAACAGC+AGG | + | chr3_3:11861666-11861685 | Msa0442330:CDS | 35.0% | |
| ATCTACATTACACACTTAGC+CGG | + | chr3_3:11861692-11861711 | Msa0442330:CDS | 35.0% | |
| GTTCTTCAAGTGTTTCTTAC+CGG | - | chr3_3:11861714-11861733 | None:intergenic | 35.0% | |
| ! | GATTAAAGTATTTGTTGCGG+TGG | - | chr3_3:11861792-11861811 | None:intergenic | 35.0% |
| ! | CCCGATTAAAGTATTTGTTG+CGG | - | chr3_3:11861795-11861814 | None:intergenic | 35.0% |
| CCGCAACAAATACTTTAATC+GGG | + | chr3_3:11861792-11861811 | Msa0442330:CDS | 35.0% | |
| !!! | CTTCTTTGGTTTTGGTTGAT+CGG | - | chr3_3:11861837-11861856 | None:intergenic | 35.0% |
| GTCAAAGAAACGTAAAGTTG+TGG | + | chr3_3:11861877-11861896 | Msa0442330:CDS | 35.0% | |
| AAGAAACGTAAAGTTGTGGA+AGG | + | chr3_3:11861881-11861900 | Msa0442330:CDS | 35.0% | |
| AATGTGCACATTATGCAATG+TGG | + | chr3_3:11861928-11861947 | Msa0442330:CDS | 35.0% | |
| GGTGAAAATTGAAAACTGTC+TGG | - | chr3_3:11861964-11861983 | None:intergenic | 35.0% | |
| GTCATTGTGTTATCTAGACT+TGG | + | chr3_3:11862050-11862069 | Msa0442330:three_prime_UTR | 35.0% | |
| ATGCAGTTTGTCATTGCTTA+TGG | + | chr3_3:11862091-11862110 | Msa0442330:three_prime_UTR | 35.0% | |
| ! | TAGCCTTTTACTTGTGTTAC+AGG | + | chr3_3:11862147-11862166 | Msa0442330:three_prime_UTR | 35.0% |
| GTTCCTGTAACACAAGTAAA+AGG | - | chr3_3:11862153-11862172 | None:intergenic | 35.0% | |
| ATAACTTCCATGATGCATTG+AGG | + | chr3_3:11862208-11862227 | Msa0442330:three_prime_UTR | 35.0% | |
| TTGTAAACCTCAATGCATCA+TGG | - | chr3_3:11862218-11862237 | None:intergenic | 35.0% | |
| GTTTAATTGCTAAGTGGTAG+AGG | + | chr3_3:11862243-11862262 | Msa0442330:three_prime_UTR | 35.0% | |
| AATCAAAAGGGGGTGGAAAA+TGG | - | chr3_3:11857523-11857542 | None:intergenic | 40.0% | |
| ! | GAGCTTGGTATTGTTGTTGA+GGG | - | chr3_3:11857617-11857636 | None:intergenic | 40.0% |
| ! | TGAGCTTGGTATTGTTGTTG+AGG | - | chr3_3:11857618-11857637 | None:intergenic | 40.0% |
| !! | AAGCTTGTTGTTGTTGTTGC+TGG | - | chr3_3:11857653-11857672 | None:intergenic | 40.0% |
| !! | TATCTGATGGGTTCAGATTG+AGG | - | chr3_3:11857804-11857823 | None:intergenic | 40.0% |
| ACTAAGAACAAAAGGGTGAG+TGG | - | chr3_3:11858036-11858055 | None:intergenic | 40.0% | |
| AAGTTCTGTTAAGTGGGTGT+TGG | + | chr3_3:11858242-11858261 | Msa0442330:intron | 40.0% | |
| ATGGAATGATATCGCGATTG+TGG | + | chr3_3:11858335-11858354 | Msa0442330:intron | 40.0% | |
| TGGCGTGATTGTCATATTCA+TGG | + | chr3_3:11858355-11858374 | Msa0442330:intron | 40.0% | |
| GCAAATGAAAGGTGAGACAA+TGG | + | chr3_3:11858381-11858400 | Msa0442330:intron | 40.0% | |
| TGGCGTGATTGTCATGATTA+GGG | + | chr3_3:11858451-11858470 | Msa0442330:intron | 40.0% | |
| AGGGTTGCAAAATAAAGGTG+AGG | + | chr3_3:11858470-11858489 | Msa0442330:intron | 40.0% | |
| GCAAAATAAAGGTGAGGCAA+TGG | + | chr3_3:11858476-11858495 | Msa0442330:intron | 40.0% | |
| ! | AGTGTTTCAAGTCGTGATTG+TGG | - | chr3_3:11858648-11858667 | None:intergenic | 40.0% |
| ATAACTAGAAGCCAAACTCG+TGG | + | chr3_3:11858845-11858864 | Msa0442330:intron | 40.0% | |
| GTTAATGATTGCCACGAGTT+TGG | - | chr3_3:11858859-11858878 | None:intergenic | 40.0% | |
| CGTTATTGACAACACCGAAT+AGG | + | chr3_3:11859040-11859059 | Msa0442330:intron | 40.0% | |
| ACACTCACAGTCATACTCAT+AGG | - | chr3_3:11859091-11859110 | None:intergenic | 40.0% | |
| CTTCTAATATTGCAGGCTGT+TGG | + | chr3_3:11859404-11859423 | Msa0442330:intron | 40.0% | |
| ACATGGCCACCACAAATTTA+TGG | + | chr3_3:11859482-11859501 | Msa0442330:CDS | 40.0% | |
| TCGTTGCCATAAATTTGTGG+TGG | - | chr3_3:11859491-11859510 | None:intergenic | 40.0% | |
| GTCTCGTTGCCATAAATTTG+TGG | - | chr3_3:11859494-11859513 | None:intergenic | 40.0% | |
| !! | TTGGTGACTTTGGTTTGGTT+AGG | - | chr3_3:11859530-11859549 | None:intergenic | 40.0% |
| ! | AAGCTTTGGTGACTTTGGTT+TGG | - | chr3_3:11859535-11859554 | None:intergenic | 40.0% |
| ! | TCTCAAAGCTTTGGTGACTT+TGG | - | chr3_3:11859540-11859559 | None:intergenic | 40.0% |
| CACTTCACATCTCAAAGCTT+TGG | - | chr3_3:11859549-11859568 | None:intergenic | 40.0% | |
| ! | ATCAACCTGTTTCTTAGGCT+CGG | - | chr3_3:11859744-11859763 | None:intergenic | 40.0% |
| ! | GCAGAATCAACCTGTTTCTT+AGG | - | chr3_3:11859749-11859768 | None:intergenic | 40.0% |
| !! | GAAACAGGTTGATTCTGCAA+CGG | + | chr3_3:11859751-11859770 | Msa0442330:CDS | 40.0% |
| TAGCTGGTTATGTGCATGTT+TGG | + | chr3_3:11860230-11860249 | Msa0442330:intron | 40.0% | |
| ATCCACTGCGAAAAAGTTAC+TGG | + | chr3_3:11860385-11860404 | Msa0442330:intron | 40.0% | |
| !!! | TTCCAGTAACTTTTTCGCAG+TGG | - | chr3_3:11860390-11860409 | None:intergenic | 40.0% |
| TGAAGACAGGCTATAAATGG+AGG | + | chr3_3:11860432-11860451 | Msa0442330:intron | 40.0% | |
| GAAGACAGGCTATAAATGGA+GGG | + | chr3_3:11860433-11860452 | Msa0442330:intron | 40.0% | |
| !!! | GCTATAAATGGAGGGCATTT+TGG | + | chr3_3:11860441-11860460 | Msa0442330:intron | 40.0% |
| CCATGTCATAGTCAAATTGC+TGG | - | chr3_3:11860508-11860527 | None:intergenic | 40.0% | |
| CCAGCAATTTGACTATGACA+TGG | + | chr3_3:11860505-11860524 | Msa0442330:intron | 40.0% | |
| TATACCTCTGTAGTTAGCAG+AGG | - | chr3_3:11860637-11860656 | None:intergenic | 40.0% | |
| CGATCTTTCTTGAAAGCTGT+AGG | + | chr3_3:11860896-11860915 | Msa0442330:intron | 40.0% | |
| TTCCTGTATGGCCGTATATA+AGG | - | chr3_3:11861245-11861264 | None:intergenic | 40.0% | |
| GAGTGCTATCATTTCCTGTA+TGG | - | chr3_3:11861257-11861276 | None:intergenic | 40.0% | |
| CTTTACCCTATTGAACTGCA+AGG | + | chr3_3:11861466-11861485 | Msa0442330:intron | 40.0% | |
| TTACGCCTTGCAGTTCAATA+GGG | - | chr3_3:11861474-11861493 | None:intergenic | 40.0% | |
| TTTACGCCTTGCAGTTCAAT+AGG | - | chr3_3:11861475-11861494 | None:intergenic | 40.0% | |
| AACCTACGAGTCACAAAAAG+TGG | - | chr3_3:11861525-11861544 | None:intergenic | 40.0% | |
| GCTTGAATTCGGCAATAGAT+GGG | - | chr3_3:11861574-11861593 | None:intergenic | 40.0% | |
| ATTGCCGAATTCAAGCGTAA+CGG | + | chr3_3:11861578-11861597 | Msa0442330:CDS | 40.0% | |
| AACACCGTTACGCTTGAATT+CGG | - | chr3_3:11861585-11861604 | None:intergenic | 40.0% | |
| ! | CTGAGCAACCTTGATTTTCT+TGG | - | chr3_3:11861627-11861646 | None:intergenic | 40.0% |
| ! | TAAAGTATTTGTTGCGGTGG+CGG | - | chr3_3:11861789-11861808 | None:intergenic | 40.0% |
| CGATCAACCAAAACCAAAGA+AGG | + | chr3_3:11861835-11861854 | Msa0442330:CDS | 40.0% | |
| !! | TCTGATGCCTTCTTTGGTTT+TGG | - | chr3_3:11861845-11861864 | None:intergenic | 40.0% |
| ! | TCAAGTTCTGATGCCTTCTT+TGG | - | chr3_3:11861851-11861870 | None:intergenic | 40.0% |
| AAACGTAAAGTTGTGGAAGG+AGG | + | chr3_3:11861884-11861903 | Msa0442330:CDS | 40.0% | |
| TGTTATCTAGACTTGGAGAC+AGG | + | chr3_3:11862057-11862076 | Msa0442330:three_prime_UTR | 40.0% | |
| GTTATCTAGACTTGGAGACA+GGG | + | chr3_3:11862058-11862077 | Msa0442330:three_prime_UTR | 40.0% | |
| AGTTGTGAATCAAAAGGGGG+TGG | - | chr3_3:11857530-11857549 | None:intergenic | 45.0% | |
| GGAAATTGTAGGGTTGAGCT+TGG | - | chr3_3:11857632-11857651 | None:intergenic | 45.0% | |
| GAGGATGAAGTGAAGGATCA+GGG | - | chr3_3:11857689-11857708 | None:intergenic | 45.0% | |
| GAGGTGTAAAGAGAAACAGG+AGG | - | chr3_3:11857750-11857769 | None:intergenic | 45.0% | |
| ! | TGGGAGGTGTAAAGAGAAAC+AGG | - | chr3_3:11857753-11857772 | None:intergenic | 45.0% |
| ! | GTGATAATCTGTTGGTTGGG+AGG | - | chr3_3:11857769-11857788 | None:intergenic | 45.0% |
| CTGGCGTGATTGTCATGATT+AGG | + | chr3_3:11858450-11858469 | Msa0442330:intron | 45.0% | |
| ! | CAAATGGTGGCTTTTGTTCG+TGG | + | chr3_3:11858741-11858760 | Msa0442330:intron | 45.0% |
| GTGTTGTCAGTAACGGTTTG+CGG | - | chr3_3:11858789-11858808 | None:intergenic | 45.0% | |
| AGTTTACCTTCTGCGTGGAA+TGG | + | chr3_3:11859458-11859477 | Msa0442330:CDS | 45.0% | |
| GTGATCCTATCTTGCCTTGT+GGG | - | chr3_3:11860133-11860152 | None:intergenic | 45.0% | |
| AGTGATCCTATCTTGCCTTG+TGG | - | chr3_3:11860134-11860153 | None:intergenic | 45.0% | |
| AAGGCAAGATAGGATCACTG+TGG | + | chr3_3:11860135-11860154 | Msa0442330:intron | 45.0% | |
| AGGCAAGATAGGATCACTGT+GGG | + | chr3_3:11860136-11860155 | Msa0442330:intron | 45.0% | |
| GGGTTGCCAAAATCACTTTG+TGG | - | chr3_3:11860306-11860325 | None:intergenic | 45.0% | |
| ! | GTTCTTCTGGAGATGAAGAC+AGG | + | chr3_3:11860419-11860438 | Msa0442330:intron | 45.0% |
| GCTAGACACTACTGAAATCG+AGG | - | chr3_3:11860576-11860595 | None:intergenic | 45.0% | |
| !! | CTGTAGCGGATATAATGTCG+TGG | - | chr3_3:11860614-11860633 | None:intergenic | 45.0% |
| AGAAGATGCAGCTCCAAAAG+GGG | - | chr3_3:11860830-11860849 | None:intergenic | 45.0% | |
| CAGAAGATGCAGCTCCAAAA+GGG | - | chr3_3:11860831-11860850 | None:intergenic | 45.0% | |
| TCAGAAGATGCAGCTCCAAA+AGG | - | chr3_3:11860832-11860851 | None:intergenic | 45.0% | |
| GACCTTATATACGGCCATAC+AGG | + | chr3_3:11861240-11861259 | Msa0442330:intron | 45.0% | |
| AAAACCAGTGTTGCCAATCG+TGG | - | chr3_3:11861322-11861341 | None:intergenic | 45.0% | |
| GAGCAACTTGGGGAAAATGT+AGG | - | chr3_3:11861433-11861452 | None:intergenic | 45.0% | |
| !!! | GACCACTTTTTGTGACTCGT+AGG | + | chr3_3:11861520-11861539 | Msa0442330:intron | 45.0% |
| CGCTTGAATTCGGCAATAGA+TGG | - | chr3_3:11861575-11861594 | None:intergenic | 45.0% | |
| GAATTCAAGCGTAACGGTGT+TGG | + | chr3_3:11861584-11861603 | Msa0442330:CDS | 45.0% | |
| !!! | CTAGTGCCGACATCGATTTT+TGG | - | chr3_3:11861755-11861774 | None:intergenic | 45.0% |
| AAAATCGATGTCGGCACTAG+TGG | + | chr3_3:11861755-11861774 | Msa0442330:CDS | 45.0% | |
| TCACCATAGCAGCATGTTTC+TGG | - | chr3_3:11861994-11862013 | None:intergenic | 45.0% | |
| ACATGCTGCTATGGTGAAGA+AGG | + | chr3_3:11861997-11862016 | Msa0442330:CDS | 45.0% | |
| GGAGGATGAAGTGAAGGATC+AGG | - | chr3_3:11857690-11857709 | None:intergenic | 50.0% | |
| GATCCTTCACTTCATCCTCC+TGG | + | chr3_3:11857690-11857709 | Msa0442330:CDS | 50.0% | |
| TGTAGCCACAGTCGCAGTAT+CGG | - | chr3_3:11858535-11858554 | None:intergenic | 50.0% | |
| TTCGATCTCTGCTGCAAACG+AGG | + | chr3_3:11858566-11858585 | Msa0442330:intron | 50.0% | |
| GACGCTTCTGACTTTCACTC+TGG | + | chr3_3:11859367-11859386 | Msa0442330:intron | 50.0% | |
| CACGCAGAAGGTAAACTTGC+AGG | - | chr3_3:11859455-11859474 | None:intergenic | 50.0% | |
| CTGCAAGTTTACCTTCTGCG+TGG | + | chr3_3:11859453-11859472 | Msa0442330:CDS | 50.0% | |
| CATGTACCATTCCACGCAGA+AGG | - | chr3_3:11859467-11859486 | None:intergenic | 50.0% | |
| CTTCTGCGTGGAATGGTACA+TGG | + | chr3_3:11859465-11859484 | Msa0442330:CDS | 50.0% | |
| AGGCTCGGATTGCTTGACTA+CGG | - | chr3_3:11859729-11859748 | None:intergenic | 50.0% | |
| GCAATCCGAGCCTAAGAAAC+AGG | + | chr3_3:11859736-11859755 | Msa0442330:CDS | 50.0% | |
| TTGGACCCACAAGGCAAGAT+AGG | + | chr3_3:11860125-11860144 | Msa0442330:intron | 50.0% | |
| !! | ATGTGCATGTTTGGTGTCGC+TGG | + | chr3_3:11860239-11860258 | Msa0442330:intron | 50.0% |
| !! | TGTGCATGTTTGGTGTCGCT+GGG | + | chr3_3:11860240-11860259 | Msa0442330:intron | 50.0% |
| !! | GTGATTTTGGCAACCCACCA+TGG | + | chr3_3:11860310-11860329 | Msa0442330:intron | 50.0% |
| AATGTCGTGGCGTGTCATAG+CGG | - | chr3_3:11860601-11860620 | None:intergenic | 50.0% | |
| GTAGTTAGCAGAGGCTGTAG+CGG | - | chr3_3:11860628-11860647 | None:intergenic | 50.0% | |
| ACAGCCTCTGCTAACTACAG+AGG | + | chr3_3:11860630-11860649 | Msa0442330:intron | 50.0% | |
| TCAAGGTTGCTCAGTCTGCA+TGG | + | chr3_3:11861633-11861652 | Msa0442330:CDS | 50.0% | |
| !! | TCGGTACCTGGCTTTTCTTG+TGG | - | chr3_3:11861818-11861837 | None:intergenic | 50.0% |
| !!! | GGTTTTGGTTGATCGGTACC+TGG | - | chr3_3:11861830-11861849 | None:intergenic | 50.0% |
| !! | CAGCATGTTTCTGGCCAACA+AGG | - | chr3_3:11861985-11862004 | None:intergenic | 50.0% |
| TGGCCAGAAACATGCTGCTA+TGG | + | chr3_3:11861988-11862007 | Msa0442330:CDS | 50.0% | |
| CTGCTATGGTGAAGAAGGCA+GGG | + | chr3_3:11862002-11862021 | Msa0442330:CDS | 50.0% | |
| GTGCCAGGAGGATGAAGTGA+AGG | - | chr3_3:11857696-11857715 | None:intergenic | 55.0% | |
| TTTGCAAGTGGGTCAGTGCC+AGG | - | chr3_3:11857711-11857730 | None:intergenic | 55.0% | |
| CGAGTGTGAGTGTCTTCACG+TGG | + | chr3_3:11858881-11858900 | Msa0442330:intron | 55.0% | |
| GGCTCGGATTGCTTGACTAC+GGG | - | chr3_3:11859728-11859747 | None:intergenic | 55.0% | |
| ! | TGGGAGAAAGCATGCTGCTC+AGG | + | chr3_3:11859832-11859851 | Msa0442330:CDS | 55.0% |
| GTTGCAACGCTGACCACCAT+GGG | + | chr3_3:11860527-11860546 | Msa0442330:intron | 55.0% | |
| ! | TTTTGACGTAGCGCCCATGG+TGG | - | chr3_3:11860543-11860562 | None:intergenic | 55.0% |
| !! | GCATTTTGACGTAGCGCCCA+TGG | - | chr3_3:11860546-11860565 | None:intergenic | 55.0% |
| ! | AAACCATTGCCGGCCCCTTT+TGG | + | chr3_3:11860814-11860833 | Msa0442330:intron | 55.0% |
| ATACAGTGCACACCTGCGAC+AGG | + | chr3_3:11860867-11860886 | Msa0442330:intron | 55.0% | |
| AGATCGTACAAGCCTGTCGC+AGG | - | chr3_3:11860882-11860901 | None:intergenic | 55.0% | |
| CGATCCACGATTGGCAACAC+TGG | + | chr3_3:11861315-11861334 | Msa0442330:intron | 55.0% | |
| ! | AGTATTTGTTGCGGTGGCGG+TGG | - | chr3_3:11861786-11861805 | None:intergenic | 55.0% |
| ATCGGGCCACAAGAAAAGCC+AGG | + | chr3_3:11861809-11861828 | Msa0442330:CDS | 55.0% | |
| GAAGGAGGAGCTGCAGTTGA+TGG | + | chr3_3:11861899-11861918 | Msa0442330:CDS | 55.0% | |
| GCTGCTATGGTGAAGAAGGC+AGG | + | chr3_3:11862001-11862020 | Msa0442330:CDS | 55.0% | |
| AAGAAGGCAGGGTCAGTCAC+TGG | + | chr3_3:11862013-11862032 | Msa0442330:CDS | 55.0% | |
| ATGGGCCGATACTGCGACTG+TGG | + | chr3_3:11858527-11858546 | Msa0442330:intron | 60.0% | |
| GGTTGCAACGCTGACCACCA+TGG | + | chr3_3:11860526-11860545 | Msa0442330:intron | 60.0% | |
| GATGCAGCTCCAAAAGGGGC+CGG | - | chr3_3:11860826-11860845 | None:intergenic | 60.0% | |
| GCAAGTGGGTCAGTGCCAGG+AGG | - | chr3_3:11857708-11857727 | None:intergenic | 65.0% | |
| GCTCCAAAAGGGGCCGGCAA+TGG | - | chr3_3:11860820-11860839 | None:intergenic | 65.0% | |
| ! | GCAGGGTCAGTCACTGGCTG+AGG | + | chr3_3:11862019-11862038 | Msa0442330:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 11857434 | 11862283 | 11857434 | ID=Msa0442330;Name=Msa0442330 |
| chr3_3 | mRNA | 11857434 | 11862283 | 11857434 | ID=Msa0442330-mRNA-1;Parent=Msa0442330;Name=Msa0442330-mRNA-1;_AED=0.16;_eAED=0.16;_QI=175|1|1|1|1|1|3|244|384 |
| chr3_3 | exon | 11857434 | 11857830 | 11857434 | ID=Msa0442330-mRNA-1:exon:2528;Parent=Msa0442330-mRNA-1 |
| chr3_3 | exon | 11859419 | 11859853 | 11859419 | ID=Msa0442330-mRNA-1:exon:2529;Parent=Msa0442330-mRNA-1 |
| chr3_3 | exon | 11861542 | 11862283 | 11861542 | ID=Msa0442330-mRNA-1:exon:2530;Parent=Msa0442330-mRNA-1 |
| chr3_3 | five_prime_UTR | 11857434 | 11857608 | 11857434 | ID=Msa0442330-mRNA-1:five_prime_utr;Parent=Msa0442330-mRNA-1 |
| chr3_3 | CDS | 11857609 | 11857830 | 11857609 | ID=Msa0442330-mRNA-1:cds;Parent=Msa0442330-mRNA-1 |
| chr3_3 | CDS | 11859419 | 11859853 | 11859419 | ID=Msa0442330-mRNA-1:cds;Parent=Msa0442330-mRNA-1 |
| chr3_3 | CDS | 11861542 | 11862039 | 11861542 | ID=Msa0442330-mRNA-1:cds;Parent=Msa0442330-mRNA-1 |
| chr3_3 | three_prime_UTR | 11862040 | 11862283 | 11862040 | ID=Msa0442330-mRNA-1:three_prime_utr;Parent=Msa0442330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
