Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442470 | AES68615.2 | 76.718 | 524 | 48 | 9 | 75 | 545 | 1 | 503 | 0.0 | 786 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442470 | sp|Q9SLH0|EIL1_ARATH | 50.936 | 267 | 111 | 4 | 30 | 279 | 45 | 308 | 1.97e-91 | 294 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442470 | G7IVH7 | 76.718 | 524 | 48 | 9 | 75 | 545 | 1 | 503 | 0.0 | 786 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0442470 | TF | EIL |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442470 | MtrunA17_Chr3g0080401 | 85.838 | 346 | 34 | 5 | 75 | 418 | 1 | 333 | 0.0 | 604 |
| Msa0442470 | MtrunA17_Chr6g0476301 | 48.907 | 366 | 162 | 7 | 75 | 424 | 1 | 357 | 1.74e-104 | 318 |
| Msa0442470 | MtrunA17_Chr6g0473191 | 60.504 | 238 | 92 | 2 | 75 | 310 | 1 | 238 | 5.90e-95 | 291 |
| Msa0442470 | MtrunA17_Chr3g0118361 | 48.252 | 286 | 132 | 4 | 33 | 305 | 51 | 333 | 1.59e-92 | 296 |
| Msa0442470 | MtrunA17_Chr6g0476291 | 58.403 | 238 | 97 | 2 | 75 | 310 | 1 | 238 | 1.24e-91 | 281 |
| Msa0442470 | MtrunA17_Chr5g0440591 | 48.432 | 287 | 133 | 4 | 30 | 302 | 45 | 330 | 1.68e-91 | 293 |
| Msa0442470 | MtrunA17_Chr2g0329151 | 50.382 | 262 | 108 | 6 | 30 | 274 | 34 | 290 | 6.75e-85 | 275 |
| Msa0442470 | MtrunA17_Chr3g0124291 | 46.586 | 249 | 122 | 3 | 34 | 271 | 32 | 280 | 9.14e-77 | 248 |
| Msa0442470 | MtrunA17_Chr8g0382561 | 48.062 | 258 | 118 | 6 | 27 | 271 | 17 | 271 | 6.49e-71 | 234 |
| Msa0442470 | MtrunA17_Chr7g0260281 | 35.246 | 122 | 66 | 4 | 67 | 177 | 1 | 120 | 2.14e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442470 | AT2G27050.1 | 50.936 | 267 | 111 | 4 | 30 | 279 | 45 | 308 | 2.00e-92 | 294 |
| Msa0442470 | AT3G20770.1 | 49.129 | 287 | 131 | 4 | 30 | 302 | 45 | 330 | 1.92e-91 | 293 |
| Msa0442470 | AT1G73730.2 | 45.928 | 307 | 129 | 7 | 29 | 305 | 16 | 315 | 5.24e-84 | 271 |
| Msa0442470 | AT1G73730.1 | 45.928 | 307 | 129 | 7 | 29 | 305 | 28 | 327 | 5.72e-84 | 272 |
| Msa0442470 | AT5G10120.1 | 42.586 | 263 | 130 | 4 | 27 | 271 | 16 | 275 | 2.96e-70 | 233 |
| Msa0442470 | AT5G21120.3 | 39.446 | 289 | 150 | 4 | 39 | 302 | 53 | 341 | 1.05e-66 | 225 |
| Msa0442470 | AT5G21120.1 | 39.446 | 289 | 150 | 4 | 39 | 302 | 53 | 341 | 1.05e-66 | 225 |
| Msa0442470 | AT5G21120.2 | 39.446 | 289 | 150 | 4 | 39 | 302 | 60 | 348 | 1.26e-66 | 225 |
| Msa0442470 | AT5G65100.1 | 40.647 | 278 | 133 | 5 | 26 | 273 | 32 | 307 | 7.79e-66 | 224 |
Find 109 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCTTGGCCAAACAATAT+TGG | 0.211643 | 3_3:-12006962 | Msa0442470:CDS |
| TGTTGCTGCTTCCTCCTATT+TGG | 0.243104 | 3_3:+12007820 | None:intergenic |
| AGATTTGAGGCTGAAAATTT+TGG | 0.272574 | 3_3:+12007284 | None:intergenic |
| GAAGAATTTAAGAATGATTC+AGG | 0.273405 | 3_3:+12008101 | None:intergenic |
| ATGCTAAGGACACAGCTATT+TGG | 0.278587 | 3_3:-12008169 | Msa0442470:CDS |
| CTCCTGATCTTCTGAAAATT+AGG | 0.282984 | 3_3:+12008230 | None:intergenic |
| CCATTTGAGGCTGCATGTTT+TGG | 0.285639 | 3_3:+12007200 | None:intergenic |
| TCTCTTGGCCAAACAATATT+GGG | 0.290198 | 3_3:-12006961 | Msa0442470:CDS |
| CACATGATTTGAAGAAGGTT+TGG | 0.299071 | 3_3:-12008292 | Msa0442470:CDS |
| TAACTTTGTGTTGCCACATT+AGG | 0.315473 | 3_3:+12006989 | None:intergenic |
| CAACTCCAACCATTTGGAAT+TGG | 0.333568 | 3_3:+12007793 | None:intergenic |
| TTCATCTTTAGATGAGTTGA+TGG | 0.334799 | 3_3:-12007059 | Msa0442470:CDS |
| TATTAATTCCCAATATTGTT+TGG | 0.336531 | 3_3:+12006953 | None:intergenic |
| ACACTACGTGTCAGCTCAAC+GGG | 0.347884 | 3_3:+12008740 | None:intergenic |
| GATGTTCGTGGCTTCGTCTA+TGG | 0.352458 | 3_3:-12008683 | Msa0442470:CDS |
| AGCTTCCAACTCCAACCATT+TGG | 0.359268 | 3_3:+12007787 | None:intergenic |
| ATTGAACCTAATATTGTATC+AGG | 0.373081 | 3_3:+12008467 | None:intergenic |
| ATCATTGATTTGCCATTGTC+AGG | 0.373781 | 3_3:+12008653 | None:intergenic |
| CGAATCATGGTGGAAGGAAA+TGG | 0.374307 | 3_3:-12008354 | Msa0442470:CDS |
| CCTCCACCATGGTGGCCAAC+AGG | 0.377036 | 3_3:-12008380 | Msa0442470:CDS |
| CAAATCAATGATTGGTTGTT+CGG | 0.379664 | 3_3:-12008642 | Msa0442470:CDS |
| AACAATGCAAAACAAGATAA+AGG | 0.381513 | 3_3:-12010395 | Msa0442470:CDS |
| AAGAGAAAGGCTCACCAAAT+AGG | 0.383738 | 3_3:-12007834 | Msa0442470:CDS |
| GACCTACCTGATACAATATT+AGG | 0.387617 | 3_3:-12008473 | Msa0442470:CDS |
| TTCTTAAATTCTTCTTGTGT+TGG | 0.395347 | 3_3:-12008092 | Msa0442470:CDS |
| CACAAAGTTATGATTTCTCT+TGG | 0.396627 | 3_3:-12006976 | Msa0442470:CDS |
| TCATATTTCGCGATTGCAGC+TGG | 0.399940 | 3_3:+12008569 | None:intergenic |
| GTTGGAATCATGTTGGTAAC+TGG | 0.406571 | 3_3:+12007235 | None:intergenic |
| TAGAAATTCTGCTCCATTTG+AGG | 0.408160 | 3_3:+12007187 | None:intergenic |
| ATCATTGAAGTGTAGATTTG+AGG | 0.410822 | 3_3:+12007271 | None:intergenic |
| CCAAAACATGCAGCCTCAAA+TGG | 0.411657 | 3_3:-12007200 | Msa0442470:CDS |
| CCCTCATCACATGATGATAA+AGG | 0.413199 | 3_3:+12007999 | None:intergenic |
| TATTAGTTATGAAGAAAGAT+TGG | 0.415453 | 3_3:-12008138 | Msa0442470:CDS |
| ACCCCAAAGAAAACATCCTT+TGG | 0.424688 | 3_3:-12008414 | Msa0442470:CDS |
| AACATGATTCCTACTCCTTC+TGG | 0.428508 | 3_3:-12007313 | Msa0442470:CDS |
| CAATCTTGTTATTGAGAGTA+GGG | 0.434145 | 3_3:-12007865 | Msa0442470:CDS |
| GGAGTATTGTTAGACATTCC+AGG | 0.438919 | 3_3:-12008211 | Msa0442470:CDS |
| AGGAACTAGAGACAAAGATA+TGG | 0.443648 | 3_3:-12010328 | Msa0442470:CDS |
| TGAAAGTAGTTATGAGTTTG+TGG | 0.453514 | 3_3:-12008069 | Msa0442470:CDS |
| GAAGGAAATGGGATTTAGTA+AGG | 0.462346 | 3_3:-12008342 | Msa0442470:CDS |
| CACCATGATTCGTTCCCTGT+TGG | 0.467429 | 3_3:+12008365 | None:intergenic |
| AAAACCACATGATTTGAAGA+AGG | 0.473630 | 3_3:-12008297 | Msa0442470:CDS |
| CAATTCCAAATGGTTGGAGT+TGG | 0.477252 | 3_3:-12007792 | Msa0442470:CDS |
| CGGAAAATCTACGCGGCTGG+TGG | 0.479055 | 3_3:-12008622 | Msa0442470:CDS |
| TGTTGCTTGATGAGCAAGTA+AGG | 0.486445 | 3_3:-12008511 | Msa0442470:CDS |
| GGCCAACAGGGAACGAATCA+TGG | 0.488109 | 3_3:-12008367 | Msa0442470:CDS |
| ACCAACATGATTCCAACTCC+TGG | 0.488765 | 3_3:-12007229 | Msa0442470:CDS |
| GACAATGGCAAATCAATGAT+TGG | 0.497156 | 3_3:-12008650 | Msa0442470:CDS |
| GCAAAATAAATTCAATGCTA+AGG | 0.497897 | 3_3:-12008183 | Msa0442470:CDS |
| CAAGTAAACTTTGAGGAAAA+CGG | 0.499208 | 3_3:-12008593 | Msa0442470:CDS |
| CCTGTTGGCCACCATGGTGG+AGG | 0.500513 | 3_3:+12008380 | None:intergenic |
| ACATTAACGACTTCAGCATT+AGG | 0.506244 | 3_3:+12007121 | None:intergenic |
| GGTAGGTCATACAAGGAGTA+AGG | 0.514149 | 3_3:+12008488 | None:intergenic |
| GAATCATGGTGGAAGGAAAT+GGG | 0.515364 | 3_3:-12008353 | Msa0442470:CDS |
| GCACCACCGTTATCAACGTT+GGG | 0.515804 | 3_3:+12010422 | None:intergenic |
| TTGGAAAATTTGTGTGTTGA+CGG | 0.518161 | 3_3:-12008273 | Msa0442470:CDS |
| AACAACCAATTCCAAATGGT+TGG | 0.519990 | 3_3:-12007798 | Msa0442470:CDS |
| AGCTGACACGTAGTGTCGAC+AGG | 0.523748 | 3_3:-12008733 | Msa0442470:CDS |
| CAAACCTTCTTCAAATCATG+TGG | 0.527454 | 3_3:+12008293 | None:intergenic |
| CAACAACAACCAATTCCAAA+TGG | 0.529692 | 3_3:-12007802 | Msa0442470:CDS |
| AACCTCCATGATGATTGTCT+TGG | 0.533086 | 3_3:+12007898 | None:intergenic |
| ACCTTTATCATCATGTGATG+AGG | 0.538023 | 3_3:-12008000 | Msa0442470:CDS |
| ACAATCTTGTTATTGAGAGT+AGG | 0.541787 | 3_3:-12007866 | Msa0442470:CDS |
| CCTTTATCATCATGTGATGA+GGG | 0.544805 | 3_3:-12007999 | Msa0442470:CDS |
| CAGAATTTCTATGATCAACA+AGG | 0.550654 | 3_3:-12007175 | Msa0442470:CDS |
| TAGGGGTGCTAATAAGAGAA+AGG | 0.554483 | 3_3:-12007847 | Msa0442470:CDS |
| GTTCGGAAAATCTACGCGGC+TGG | 0.554542 | 3_3:-12008625 | Msa0442470:CDS |
| AGCACCACCGTTATCAACGT+TGG | 0.555643 | 3_3:+12010421 | None:intergenic |
| CTCATCTAAAGATGAATCGA+AGG | 0.557404 | 3_3:+12007066 | None:intergenic |
| ATGCATCCCAACGTTGATAA+CGG | 0.559621 | 3_3:-12010428 | Msa0442470:CDS |
| AATCAGATCACTATTCATGC+AGG | 0.564840 | 3_3:-12007699 | Msa0442470:intron |
| AAACATAGATATGACTATTG+AGG | 0.565786 | 3_3:-12010348 | Msa0442470:CDS |
| ACTTATTGATTCTCCTAATG+TGG | 0.567478 | 3_3:-12007002 | Msa0442470:CDS |
| TCGTTCCCTGTTGGCCACCA+TGG | 0.567749 | 3_3:+12008374 | None:intergenic |
| CAGGTACATGTTAAAGATGG+TGG | 0.568652 | 3_3:-12008714 | Msa0442470:CDS |
| TGATGATTGTCTTGGTAATG+TGG | 0.571675 | 3_3:+12007906 | None:intergenic |
| GAAAGACCAAGTAAACTTTG+AGG | 0.573836 | 3_3:-12008600 | Msa0442470:CDS |
| GGAGGAATGCCGCTTTCCAA+AGG | 0.574058 | 3_3:+12008398 | None:intergenic |
| CTCCACCATGGTGGCCAACA+GGG | 0.575877 | 3_3:-12008379 | Msa0442470:CDS |
| TTCCCTGTTGGCCACCATGG+TGG | 0.581079 | 3_3:+12008377 | None:intergenic |
| TGGTAATCACCAGAAGGAGT+AGG | 0.582343 | 3_3:+12007304 | None:intergenic |
| GACACTACGTGTCAGCTCAA+CGG | 0.583260 | 3_3:+12008739 | None:intergenic |
| TTCAAGTTGATCAACCATGT+TGG | 0.584606 | 3_3:+12007968 | None:intergenic |
| CGACAGGTACATGTTAAAGA+TGG | 0.589384 | 3_3:-12008717 | Msa0442470:CDS |
| GTGATCTGATTTGCAACAGA+AGG | 0.591015 | 3_3:+12007711 | None:intergenic |
| TGTATCAGGTAGGTCATACA+AGG | 0.591621 | 3_3:+12008481 | None:intergenic |
| CATTACCAAGACAATCATCA+TGG | 0.594402 | 3_3:-12007903 | Msa0442470:CDS |
| AGAAAGGCTCACCAAATAGG+AGG | 0.595686 | 3_3:-12007831 | Msa0442470:CDS |
| AGAAAACATCCTTTGGAAAG+CGG | 0.596755 | 3_3:-12008407 | Msa0442470:CDS |
| GCTTGCTCATGTTGGTCAAG+AGG | 0.599308 | 3_3:+12007741 | None:intergenic |
| TCCAGGAGTTGGAATCATGT+TGG | 0.604429 | 3_3:+12007228 | None:intergenic |
| AGGGAACGAATCATGGTGGA+AGG | 0.608968 | 3_3:-12008360 | Msa0442470:CDS |
| GCGAAATATGAAGAAGAATG+TGG | 0.616921 | 3_3:-12008557 | Msa0442470:CDS |
| GTACTGCAGCTTGCTCATGT+TGG | 0.618229 | 3_3:+12007733 | None:intergenic |
| AGAATTTCTATGATCAACAA+GGG | 0.625036 | 3_3:-12007174 | Msa0442470:CDS |
| AATCTTGTTATTGAGAGTAG+GGG | 0.639924 | 3_3:-12007864 | Msa0442470:CDS |
| AGCTCAAAGAATCAACAACA+TGG | 0.679952 | 3_3:-12007768 | Msa0442470:CDS |
| GCGGCATTCCTCCACCATGG+TGG | 0.682914 | 3_3:-12008388 | Msa0442470:CDS |
| AACCTAATATTGTATCAGGT+AGG | 0.686602 | 3_3:+12008471 | None:intergenic |
| GAATTTCTATGATCAACAAG+GGG | 0.696998 | 3_3:-12007173 | Msa0442470:CDS |
| GGAAACAGATGATTATGATG+TGG | 0.698666 | 3_3:-12008048 | Msa0442470:CDS |
| TATGGAGTAGTACCTGACAA+TGG | 0.702873 | 3_3:-12008665 | Msa0442470:CDS |
| AAAGCGGCATTCCTCCACCA+TGG | 0.708484 | 3_3:-12008391 | Msa0442470:CDS |
| CATCCCAACGTTGATAACGG+TGG | 0.725792 | 3_3:-12010425 | Msa0442470:CDS |
| TACCAAGACAATCATCATGG+AGG | 0.740488 | 3_3:-12007900 | Msa0442470:CDS |
| CAACAGGGAACGAATCATGG+TGG | 0.754137 | 3_3:-12008364 | Msa0442470:CDS |
| CACTACGTGTCAGCTCAACG+GGG | 0.769887 | 3_3:+12008741 | None:intergenic |
| GGTTGTTCGGAAAATCTACG+CGG | 0.801495 | 3_3:-12008629 | Msa0442470:CDS |
| TGAGGGTTCTGATACCAACA+TGG | 0.812240 | 3_3:-12007982 | Msa0442470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTATATATTAAATTTAA+AGG | + | chr3_3:12007875-12007894 | None:intergenic | 0.0% |
| !!! | TTAATATATAATATTTTAAA+AGG | - | chr3_3:12007881-12007900 | Msa0442470:CDS | 0.0% |
| !!! | TAATATATAATATTTTAAAA+GGG | - | chr3_3:12007882-12007901 | Msa0442470:CDS | 0.0% |
| !!! | AAATTTTATATTTTAAAATA+GGG | + | chr3_3:12008164-12008183 | None:intergenic | 0.0% |
| !!! | AAAATTTTATATTTTAAAAT+AGG | + | chr3_3:12008165-12008184 | None:intergenic | 0.0% |
| !!! | GAAAATATTAATCTTTAAAA+CGG | + | chr3_3:12007275-12007294 | None:intergenic | 10.0% |
| !!! | GAAAATATTAATCTTTAAAA+CGG | + | chr3_3:12007275-12007294 | None:intergenic | 10.0% |
| !!! | TCAATAGAAATAAAAATTTT+GGG | + | chr3_3:12007409-12007428 | None:intergenic | 10.0% |
| !!! | TTCAATAGAAATAAAAATTT+TGG | + | chr3_3:12007410-12007429 | None:intergenic | 10.0% |
| !! | AAAAATTAGCATAAATTAAA+AGG | - | chr3_3:12007600-12007619 | Msa0442470:intron | 10.0% |
| !! | TGAAGAAAAAAATAAAAAAT+TGG | + | chr3_3:12008006-12008025 | None:intergenic | 10.0% |
| !!! | AAAACAAAAATATTTTTCAA+GGG | - | chr3_3:12008066-12008085 | Msa0442470:CDS | 10.0% |
| !! | TTTACTTCATATTAAAATTA+TGG | + | chr3_3:12008513-12008532 | None:intergenic | 10.0% |
| !!! | TTAAAGATTAATATTTTCAG+AGG | - | chr3_3:12007277-12007296 | Msa0442470:CDS | 15.0% |
| !!! | TTAAAGATTAATATTTTCAG+AGG | - | chr3_3:12007277-12007296 | Msa0442470:CDS | 15.0% |
| !!! | CAATAGAAATAAAAATTTTG+GGG | + | chr3_3:12007408-12007427 | None:intergenic | 15.0% |
| !!! | CAAAAGAAAAATATTTTACA+GGG | + | chr3_3:12007955-12007974 | None:intergenic | 15.0% |
| !!! | TCAAAAGAAAAATATTTTAC+AGG | + | chr3_3:12007956-12007975 | None:intergenic | 15.0% |
| !!! | CAAAACAAAAATATTTTTCA+AGG | - | chr3_3:12008065-12008084 | Msa0442470:CDS | 15.0% |
| !!! | AAACAAAAATATTTTTCAAG+GGG | - | chr3_3:12008067-12008086 | Msa0442470:CDS | 15.0% |
| !!! | ATATTTTAAAATAGGGTTAA+TGG | + | chr3_3:12008157-12008176 | None:intergenic | 15.0% |
| !!! | CCAAATACAAATATTTTTTT+AGG | + | chr3_3:12008194-12008213 | None:intergenic | 15.0% |
| !! | CCTAAAAAAATATTTGTATT+TGG | - | chr3_3:12008191-12008210 | Msa0442470:CDS | 15.0% |
| !!! | TTACTTAAAAACTAGTTTTT+AGG | - | chr3_3:12009816-12009835 | Msa0442470:intron | 15.0% |
| !!! | TACTTAAAAACTAGTTTTTA+GGG | - | chr3_3:12009817-12009836 | Msa0442470:intron | 15.0% |
| !! | TAGCTAAAAATATATTGTTG+GGG | + | chr3_3:12007559-12007578 | None:intergenic | 20.0% |
| !! | GTAGCTAAAAATATATTGTT+GGG | + | chr3_3:12007560-12007579 | None:intergenic | 20.0% |
| !! | TGTTTAATCTCTATAAAACT+AGG | + | chr3_3:12007845-12007864 | None:intergenic | 20.0% |
| !!! | ATTTTTTTCTTCAGAAATTC+TGG | - | chr3_3:12008013-12008032 | Msa0442470:CDS | 20.0% |
| !!! | AACAAAAATATTTTTCAAGG+GGG | - | chr3_3:12008068-12008087 | Msa0442470:CDS | 20.0% |
| !!! | TATTTTAATTCTATCTCTTG+AGG | - | chr3_3:12008250-12008269 | Msa0442470:CDS | 20.0% |
| !!! | ATATTTTAGTTAGTGAACTA+GGG | - | chr3_3:12008337-12008356 | Msa0442470:CDS | 20.0% |
| !! | ATGAAATCAATTCATAAACA+TGG | + | chr3_3:12008553-12008572 | None:intergenic | 20.0% |
| !! | TATTAGTTATGAAGAAAGAT+TGG | - | chr3_3:12009245-12009264 | Msa0442470:intron | 20.0% |
| ! | AACAATGCAAAACAAGATAA+AGG | - | chr3_3:12006988-12007007 | Msa0442470:CDS | 25.0% |
| ! | AAAGGAAAGAAAAAAGAAGA+AGG | - | chr3_3:12007006-12007025 | Msa0442470:CDS | 25.0% |
| ! | AAACATAGATATGACTATTG+AGG | - | chr3_3:12007035-12007054 | Msa0442470:CDS | 25.0% |
| ! | ACAATTGAAAAGAAAGACAA+TGG | - | chr3_3:12007146-12007165 | Msa0442470:CDS | 25.0% |
| !!! | TTTATTTCTATTGAACCACT+AGG | - | chr3_3:12007415-12007434 | Msa0442470:intron | 25.0% |
| ! | CATAATATATACAAAGTCTG+GGG | + | chr3_3:12007470-12007489 | None:intergenic | 25.0% |
| ! | GCATAATATATACAAAGTCT+GGG | + | chr3_3:12007471-12007490 | None:intergenic | 25.0% |
| ! | TGCATAATATATACAAAGTC+TGG | + | chr3_3:12007472-12007491 | None:intergenic | 25.0% |
| ! | AACCACTAGGTATATTAATA+TGG | - | chr3_3:12007526-12007545 | Msa0442470:intron | 25.0% |
| ! | GGTAGCTAAAAATATATTGT+TGG | + | chr3_3:12007561-12007580 | None:intergenic | 25.0% |
| !! | TTTGCAAATGAATTTGTTTG+AGG | + | chr3_3:12007582-12007601 | None:intergenic | 25.0% |
| ! | TTTGTCTTATGTTGACATTT+CGG | - | chr3_3:12007654-12007673 | Msa0442470:intron | 25.0% |
| ! | TCAATAGTCAAACATAATAG+AGG | - | chr3_3:12007722-12007741 | Msa0442470:CDS | 25.0% |
| ! | AAAATGACCTATATTATAGG+GGG | + | chr3_3:12007922-12007941 | None:intergenic | 25.0% |
| ! | GAAAATGACCTATATTATAG+GGG | + | chr3_3:12007923-12007942 | None:intergenic | 25.0% |
| ! | CGAAAATGACCTATATTATA+GGG | + | chr3_3:12007924-12007943 | None:intergenic | 25.0% |
| !!! | CCTATAATATAGGTCATTTT+CGG | - | chr3_3:12007922-12007941 | Msa0442470:CDS | 25.0% |
| !! | AGCTAGAGAAATTTTTACAA+GGG | + | chr3_3:12008219-12008238 | None:intergenic | 25.0% |
| !! | AAGCTAGAGAAATTTTTACA+AGG | + | chr3_3:12008220-12008239 | None:intergenic | 25.0% |
| ! | GATAGAATTAAAATATCCAG+CGG | + | chr3_3:12008245-12008264 | None:intergenic | 25.0% |
| !!! | GGATCATTTTCAAGTTTAAT+TGG | - | chr3_3:12008304-12008323 | Msa0442470:CDS | 25.0% |
| !!! | CATATTTTAGTTAGTGAACT+AGG | - | chr3_3:12008336-12008355 | Msa0442470:CDS | 25.0% |
| ! | AAGTCAAAGTTCTCAAAATT+GGG | + | chr3_3:12008600-12008619 | None:intergenic | 25.0% |
| ! | ATTGAACCTAATATTGTATC+AGG | + | chr3_3:12008919-12008938 | None:intergenic | 25.0% |
| !!! | AAATCATGTGGTTTTTTGTA+TGG | + | chr3_3:12009081-12009100 | None:intergenic | 25.0% |
| ! | GCAAAATAAATTCAATGCTA+AGG | - | chr3_3:12009200-12009219 | Msa0442470:intron | 25.0% |
| ! | GAAGAATTTAAGAATGATTC+AGG | + | chr3_3:12009285-12009304 | None:intergenic | 25.0% |
| ! | TTCTTAAATTCTTCTTGTGT+TGG | - | chr3_3:12009291-12009310 | Msa0442470:intron | 25.0% |
| ! | AGAATTTCTATGATCAACAA+GGG | - | chr3_3:12010209-12010228 | Msa0442470:intron | 25.0% |
| AAGTGACAATAAAACATCAC+TGG | - | chr3_3:12007122-12007141 | Msa0442470:CDS | 30.0% | |
| !!! | TGAACCACTAGGTATTTTTT+TGG | - | chr3_3:12007426-12007445 | Msa0442470:intron | 30.0% |
| AGCCATATTAATATACCTAG+TGG | + | chr3_3:12007531-12007550 | None:intergenic | 30.0% | |
| ! | TGTTTTACCCCCTATAATAT+AGG | - | chr3_3:12007912-12007931 | Msa0442470:CDS | 30.0% |
| CCGAAAATGACCTATATTAT+AGG | + | chr3_3:12007925-12007944 | None:intergenic | 30.0% | |
| ! | TTTTTGAATGACCTATTAGG+GGG | + | chr3_3:12008036-12008055 | None:intergenic | 30.0% |
| ! | GTTTTTGAATGACCTATTAG+GGG | + | chr3_3:12008035-12008054 | None:intergenic | 30.0% |
| ! | GGTTTTTGAATGACCTATTA+GGG | + | chr3_3:12008034-12008053 | None:intergenic | 30.0% |
| ! | TGGTTTTTGAATGACCTATT+AGG | + | chr3_3:12008033-12008052 | None:intergenic | 30.0% |
| ! | TGGTTTTTGAATGACCTATT+AGG | - | chr3_3:12008033-12008052 | Msa0442470:CDS | 30.0% |
| ! | GGTTTTTGAATGACCTATTA+GGG | - | chr3_3:12008034-12008053 | Msa0442470:CDS | 30.0% |
| ! | GTTTTTGAATGACCTATTAG+GGG | - | chr3_3:12008035-12008054 | Msa0442470:CDS | 30.0% |
| ! | TTTTTGAATGACCTATTAGG+GGG | - | chr3_3:12008036-12008055 | Msa0442470:CDS | 30.0% |
| ! | GCTAGAGAAATTTTTACAAG+GGG | + | chr3_3:12008218-12008237 | None:intergenic | 30.0% |
| TTAAACTTGAAAATGATCCC+TGG | + | chr3_3:12008303-12008322 | None:intergenic | 30.0% | |
| CAAGTCAAAGTTCTCAAAAT+TGG | + | chr3_3:12008601-12008620 | None:intergenic | 30.0% | |
| ! | CAAATCAATGATTGGTTGTT+CGG | - | chr3_3:12008741-12008760 | Msa0442470:CDS | 30.0% |
| ! | CAAGTAAACTTTGAGGAAAA+CGG | - | chr3_3:12008790-12008809 | Msa0442470:intron | 30.0% |
| AACCTAATATTGTATCAGGT+AGG | + | chr3_3:12008915-12008934 | None:intergenic | 30.0% | |
| ! | TTCCAAAGGATGTTTTCTTT+GGG | + | chr3_3:12008974-12008993 | None:intergenic | 30.0% |
| ! | TTTCCAAAGGATGTTTTCTT+TGG | + | chr3_3:12008975-12008994 | None:intergenic | 30.0% |
| AAAACCACATGATTTGAAGA+AGG | - | chr3_3:12009086-12009105 | Msa0442470:intron | 30.0% | |
| TTGGAAAATTTGTGTGTTGA+CGG | - | chr3_3:12009110-12009129 | Msa0442470:intron | 30.0% | |
| TGAAAGTAGTTATGAGTTTG+TGG | - | chr3_3:12009314-12009333 | Msa0442470:intron | 30.0% | |
| !! | ACAATCTTGTTATTGAGAGT+AGG | - | chr3_3:12009517-12009536 | Msa0442470:intron | 30.0% |
| !! | CAATCTTGTTATTGAGAGTA+GGG | - | chr3_3:12009518-12009537 | Msa0442470:intron | 30.0% |
| !! | AATCTTGTTATTGAGAGTAG+GGG | - | chr3_3:12009519-12009538 | Msa0442470:intron | 30.0% |
| ATGCATGACAAATGTAGATA+GGG | + | chr3_3:12009776-12009795 | None:intergenic | 30.0% | |
| ! | TTTTTCCTACATAAGTAGCT+CGG | + | chr3_3:12009895-12009914 | None:intergenic | 30.0% |
| ! | AAGGAGAAGATGTTTCTATT+TGG | - | chr3_3:12010023-12010042 | Msa0442470:intron | 30.0% |
| !! | AAATTTTGGTAATCACCAGA+AGG | + | chr3_3:12010088-12010107 | None:intergenic | 30.0% |
| !! | AGATTTGAGGCTGAAAATTT+TGG | + | chr3_3:12010102-12010121 | None:intergenic | 30.0% |
| ATCATTGAAGTGTAGATTTG+AGG | + | chr3_3:12010115-12010134 | None:intergenic | 30.0% | |
| CAGAATTTCTATGATCAACA+AGG | - | chr3_3:12010208-12010227 | Msa0442470:intron | 30.0% | |
| GAATTTCTATGATCAACAAG+GGG | - | chr3_3:12010210-12010229 | Msa0442470:intron | 30.0% | |
| ! | TTCATCTTTAGATGAGTTGA+TGG | - | chr3_3:12010324-12010343 | Msa0442470:CDS | 30.0% |
| !! | ACTTATTGATTCTCCTAATG+TGG | - | chr3_3:12010381-12010400 | Msa0442470:CDS | 30.0% |
| CACAAAGTTATGATTTCTCT+TGG | - | chr3_3:12010407-12010426 | Msa0442470:CDS | 30.0% | |
| GGAAAGAAAAAAGAAGAAGG+TGG | - | chr3_3:12007009-12007028 | Msa0442470:CDS | 35.0% | |
| AGGAACTAGAGACAAAGATA+TGG | - | chr3_3:12007055-12007074 | Msa0442470:CDS | 35.0% | |
| ! | CGAATCCTTTTTGATAGGAT+GGG | - | chr3_3:12007300-12007319 | Msa0442470:CDS | 35.0% |
| ! | GAATCCTTTTTGATAGGATG+GGG | - | chr3_3:12007301-12007320 | Msa0442470:CDS | 35.0% |
| ! | CGAATCCTTTTTGATAGGAT+GGG | - | chr3_3:12007300-12007319 | Msa0442470:CDS | 35.0% |
| ! | GAATCCTTTTTGATAGGATG+GGG | - | chr3_3:12007301-12007320 | Msa0442470:CDS | 35.0% |
| !!! | ACCACTAGGTATTTTTTTGG+TGG | - | chr3_3:12007429-12007448 | Msa0442470:intron | 35.0% |
| ACCACCAAAAAAATACCTAG+TGG | + | chr3_3:12007433-12007452 | None:intergenic | 35.0% | |
| !!! | ACTAGGTATTTTTTTGGTGG+TGG | - | chr3_3:12007432-12007451 | Msa0442470:intron | 35.0% |
| !!! | CTTTTGATTTACCCCCTAAT+AGG | - | chr3_3:12007969-12007988 | Msa0442470:CDS | 35.0% |
| ! | TTTTGAATGACCTATTAGGG+GGG | - | chr3_3:12008037-12008056 | Msa0442470:CDS | 35.0% |
| !!! | TTTTGATTTACCCCCCTAAT+AGG | + | chr3_3:12008050-12008069 | None:intergenic | 35.0% |
| ACCGAAATGACCTATATTAC+AGG | - | chr3_3:12008121-12008140 | Msa0442470:CDS | 35.0% | |
| CCCTGTAATATAGGTCATTT+CGG | + | chr3_3:12008125-12008144 | None:intergenic | 35.0% | |
| CCGAAATGACCTATATTACA+GGG | - | chr3_3:12008122-12008141 | Msa0442470:CDS | 35.0% | |
| CGAAATGACCTATATTACAG+GGG | - | chr3_3:12008123-12008142 | Msa0442470:CDS | 35.0% | |
| GAAATGACCTATATTACAGG+GGG | - | chr3_3:12008124-12008143 | Msa0442470:CDS | 35.0% | |
| AAAATCGCAAGTTAAAGTCC+AGG | - | chr3_3:12008282-12008301 | Msa0442470:CDS | 35.0% | |
| AAATCGCAAGTTAAAGTCCA+GGG | - | chr3_3:12008283-12008302 | Msa0442470:CDS | 35.0% | |
| !! | ATCATTGATTTGCCATTGTC+AGG | + | chr3_3:12008733-12008752 | None:intergenic | 35.0% |
| GACAATGGCAAATCAATGAT+TGG | - | chr3_3:12008733-12008752 | Msa0442470:CDS | 35.0% | |
| GAAAGACCAAGTAAACTTTG+AGG | - | chr3_3:12008783-12008802 | Msa0442470:intron | 35.0% | |
| ! | CGTTTTCCTCAAAGTTTACT+TGG | + | chr3_3:12008792-12008811 | None:intergenic | 35.0% |
| GCGAAATATGAAGAAGAATG+TGG | - | chr3_3:12008826-12008845 | Msa0442470:intron | 35.0% | |
| GACCTACCTGATACAATATT+AGG | - | chr3_3:12008910-12008929 | Msa0442470:intron | 35.0% | |
| ! | TCCAAAGGATGTTTTCTTTG+GGG | + | chr3_3:12008973-12008992 | None:intergenic | 35.0% |
| ! | AGAAAACATCCTTTGGAAAG+CGG | - | chr3_3:12008976-12008995 | Msa0442470:intron | 35.0% |
| GAAGGAAATGGGATTTAGTA+AGG | - | chr3_3:12009041-12009060 | Msa0442470:intron | 35.0% | |
| !!! | TCATGTGGTTTTTTGTATGG+TGG | + | chr3_3:12009078-12009097 | None:intergenic | 35.0% |
| CAAACCTTCTTCAAATCATG+TGG | + | chr3_3:12009093-12009112 | None:intergenic | 35.0% | |
| CACATGATTTGAAGAAGGTT+TGG | - | chr3_3:12009091-12009110 | Msa0442470:intron | 35.0% | |
| ! | CTCCTAATTTTCAGAAGATC+AGG | - | chr3_3:12009151-12009170 | Msa0442470:intron | 35.0% |
| ! | CTCCTGATCTTCTGAAAATT+AGG | + | chr3_3:12009156-12009175 | None:intergenic | 35.0% |
| !!! | GAATTTATTTTGCAAGCTCC+TGG | + | chr3_3:12009193-12009212 | None:intergenic | 35.0% |
| GGAAACAGATGATTATGATG+TGG | - | chr3_3:12009335-12009354 | Msa0442470:intron | 35.0% | |
| ACCTTTATCATCATGTGATG+AGG | - | chr3_3:12009383-12009402 | Msa0442470:intron | 35.0% | |
| CCTTTATCATCATGTGATGA+GGG | - | chr3_3:12009384-12009403 | Msa0442470:intron | 35.0% | |
| !! | TTCAAGTTGATCAACCATGT+TGG | + | chr3_3:12009418-12009437 | None:intergenic | 35.0% |
| !! | TGATGATTGTCTTGGTAATG+TGG | + | chr3_3:12009480-12009499 | None:intergenic | 35.0% |
| CATTACCAAGACAATCATCA+TGG | - | chr3_3:12009480-12009499 | Msa0442470:intron | 35.0% | |
| CAACAACAACCAATTCCAAA+TGG | - | chr3_3:12009581-12009600 | Msa0442470:intron | 35.0% | |
| AACAACCAATTCCAAATGGT+TGG | - | chr3_3:12009585-12009604 | Msa0442470:intron | 35.0% | |
| AGCTCAAAGAATCAACAACA+TGG | - | chr3_3:12009615-12009634 | Msa0442470:intron | 35.0% | |
| AATCAGATCACTATTCATGC+AGG | - | chr3_3:12009684-12009703 | Msa0442470:intron | 35.0% | |
| ACTATTCATGCAGGTAATCA+TGG | - | chr3_3:12009693-12009712 | Msa0442470:intron | 35.0% | |
| GATGCATGACAAATGTAGAT+AGG | + | chr3_3:12009777-12009796 | None:intergenic | 35.0% | |
| ! | TCTTGATTTGATTACCATGC+AGG | - | chr3_3:12009986-12010005 | Msa0442470:intron | 35.0% |
| !! | TTTTGGTTAAATCCAGGAGT+TGG | + | chr3_3:12010169-12010188 | None:intergenic | 35.0% |
| !!! | TGCATGTTTTGGTTAAATCC+AGG | + | chr3_3:12010175-12010194 | None:intergenic | 35.0% |
| TAGAAATTCTGCTCCATTTG+AGG | + | chr3_3:12010199-12010218 | None:intergenic | 35.0% | |
| ACATTAACGACTTCAGCATT+AGG | + | chr3_3:12010265-12010284 | None:intergenic | 35.0% | |
| ! | GTTGAGACATTTTCATGCAT+TGG | + | chr3_3:12010289-12010308 | None:intergenic | 35.0% |
| CTCATCTAAAGATGAATCGA+AGG | + | chr3_3:12010320-12010339 | None:intergenic | 35.0% | |
| TAACTTTGTGTTGCCACATT+AGG | + | chr3_3:12010397-12010416 | None:intergenic | 35.0% | |
| TTCTCTTGGCCAAACAATAT+TGG | - | chr3_3:12010421-12010440 | Msa0442470:CDS | 35.0% | |
| TCTCTTGGCCAAACAATATT+GGG | - | chr3_3:12010422-12010441 | Msa0442470:CDS | 35.0% | |
| ! | ATGCATCCCAACGTTGATAA+CGG | - | chr3_3:12006955-12006974 | Msa0442470:CDS | 40.0% |
| ! | AGAGGCGAATCCTTTTTGAT+AGG | - | chr3_3:12007295-12007314 | Msa0442470:CDS | 40.0% |
| ! | GCGAATCCTTTTTGATAGGA+TGG | - | chr3_3:12007299-12007318 | Msa0442470:CDS | 40.0% |
| ! | AGAGGCGAATCCTTTTTGAT+AGG | - | chr3_3:12007295-12007314 | Msa0442470:CDS | 40.0% |
| ! | GCGAATCCTTTTTGATAGGA+TGG | - | chr3_3:12007299-12007318 | Msa0442470:CDS | 40.0% |
| !!! | GGTATTTTTTTGGTGGTGGT+CGG | - | chr3_3:12007436-12007455 | Msa0442470:intron | 40.0% |
| !!! | GTATTTTTTTGGTGGTGGTC+GGG | - | chr3_3:12007437-12007456 | Msa0442470:intron | 40.0% |
| !!! | TATTTTTTTGGTGGTGGTCG+GGG | - | chr3_3:12007438-12007457 | Msa0442470:intron | 40.0% |
| TGCTTTACCCCCTGTAATAT+AGG | + | chr3_3:12008134-12008153 | None:intergenic | 40.0% | |
| GTGAACTAGGGTAAACTTAC+AGG | - | chr3_3:12008349-12008368 | Msa0442470:CDS | 40.0% | |
| CGACAGGTACATGTTAAAGA+TGG | - | chr3_3:12008666-12008685 | Msa0442470:CDS | 40.0% | |
| CAGGTACATGTTAAAGATGG+TGG | - | chr3_3:12008669-12008688 | Msa0442470:CDS | 40.0% | |
| ! | GTGGAATTTTGTGATGTTCG+TGG | - | chr3_3:12008688-12008707 | Msa0442470:CDS | 40.0% |
| TATGGAGTAGTACCTGACAA+TGG | - | chr3_3:12008718-12008737 | Msa0442470:CDS | 40.0% | |
| ! | TGTTGCTTGATGAGCAAGTA+AGG | - | chr3_3:12008872-12008891 | Msa0442470:intron | 40.0% |
| TGTATCAGGTAGGTCATACA+AGG | + | chr3_3:12008905-12008924 | None:intergenic | 40.0% | |
| !! | AAAGGATGTTTTCTTTGGGG+TGG | + | chr3_3:12008970-12008989 | None:intergenic | 40.0% |
| ACCCCAAAGAAAACATCCTT+TGG | - | chr3_3:12008969-12008988 | Msa0442470:intron | 40.0% | |
| ! | GAATCATGGTGGAAGGAAAT+GGG | - | chr3_3:12009030-12009049 | Msa0442470:intron | 40.0% |
| !!! | GTGGTTTTTTGTATGGTGGT+GGG | + | chr3_3:12009074-12009093 | None:intergenic | 40.0% |
| !!! | TGTGGTTTTTTGTATGGTGG+TGG | + | chr3_3:12009075-12009094 | None:intergenic | 40.0% |
| !! | GGAGTATTGTTAGACATTCC+AGG | - | chr3_3:12009172-12009191 | Msa0442470:intron | 40.0% |
| ATGCTAAGGACACAGCTATT+TGG | - | chr3_3:12009214-12009233 | Msa0442470:intron | 40.0% | |
| CCCTCATCACATGATGATAA+AGG | + | chr3_3:12009387-12009406 | None:intergenic | 40.0% | |
| TACCAAGACAATCATCATGG+AGG | - | chr3_3:12009483-12009502 | Msa0442470:intron | 40.0% | |
| AACCTCCATGATGATTGTCT+TGG | + | chr3_3:12009488-12009507 | None:intergenic | 40.0% | |
| !! | TAGGGGTGCTAATAAGAGAA+AGG | - | chr3_3:12009536-12009555 | Msa0442470:intron | 40.0% |
| AAGAGAAAGGCTCACCAAAT+AGG | - | chr3_3:12009549-12009568 | Msa0442470:intron | 40.0% | |
| ! | CAACTCCAACCATTTGGAAT+TGG | + | chr3_3:12009593-12009612 | None:intergenic | 40.0% |
| CAATTCCAAATGGTTGGAGT+TGG | - | chr3_3:12009591-12009610 | Msa0442470:intron | 40.0% | |
| ! | GTGATCTGATTTGCAACAGA+AGG | + | chr3_3:12009675-12009694 | None:intergenic | 40.0% |
| AACATGATTCCTACTCCTTC+TGG | - | chr3_3:12010070-12010089 | Msa0442470:intron | 40.0% | |
| !! | GTTGGAATCATGTTGGTAAC+TGG | + | chr3_3:12010151-12010170 | None:intergenic | 40.0% |
| ! | GTGCACAAGAGGGCATATTA+AGG | - | chr3_3:12007172-12007191 | Msa0442470:CDS | 45.0% |
| GCTACCCCATCCTATCAAAA+AGG | + | chr3_3:12007308-12007327 | None:intergenic | 45.0% | |
| TTGATAGGATGGGGTAGCAT+TGG | - | chr3_3:12007310-12007329 | Msa0442470:CDS | 45.0% | |
| GCTACCCCATCCTATCAAAA+AGG | + | chr3_3:12007308-12007327 | None:intergenic | 45.0% | |
| TTGATAGGATGGGGTAGCAT+TGG | - | chr3_3:12007310-12007329 | Msa0442470:CDS | 45.0% | |
| ! | TGAGCTTAGCTCAGTTGGTA+TGG | + | chr3_3:12007499-12007518 | None:intergenic | 45.0% |
| TCTTGTGAGCTTAGCTCAGT+TGG | + | chr3_3:12007504-12007523 | None:intergenic | 45.0% | |
| AGCTCACAAGAACAACCACT+AGG | - | chr3_3:12007513-12007532 | Msa0442470:intron | 45.0% | |
| GGTTGTTCGGAAAATCTACG+CGG | - | chr3_3:12008754-12008773 | Msa0442470:CDS | 45.0% | |
| TCATATTTCGCGATTGCAGC+TGG | + | chr3_3:12008817-12008836 | None:intergenic | 45.0% | |
| GGTAGGTCATACAAGGAGTA+AGG | + | chr3_3:12008898-12008917 | None:intergenic | 45.0% | |
| ! | CGAATCATGGTGGAAGGAAA+TGG | - | chr3_3:12009029-12009048 | Msa0442470:intron | 45.0% |
| ! | TGAGGGTTCTGATACCAACA+TGG | - | chr3_3:12009401-12009420 | Msa0442470:intron | 45.0% |
| AGAAAGGCTCACCAAATAGG+AGG | - | chr3_3:12009552-12009571 | Msa0442470:intron | 45.0% | |
| ! | TGTTGCTGCTTCCTCCTATT+TGG | + | chr3_3:12009566-12009585 | None:intergenic | 45.0% |
| AGCTTCCAACTCCAACCATT+TGG | + | chr3_3:12009599-12009618 | None:intergenic | 45.0% | |
| ACCAACCGAGCTACTTATGT+AGG | - | chr3_3:12009887-12009906 | Msa0442470:intron | 45.0% | |
| TCCTACATAAGTAGCTCGGT+TGG | + | chr3_3:12009891-12009910 | None:intergenic | 45.0% | |
| TACCATGCAGGTAATGACTC+AGG | - | chr3_3:12009998-12010017 | Msa0442470:intron | 45.0% | |
| ATGAATCATGTTGTGCCAGC+TGG | - | chr3_3:12010046-12010065 | Msa0442470:intron | 45.0% | |
| TGGTAATCACCAGAAGGAGT+AGG | + | chr3_3:12010082-12010101 | None:intergenic | 45.0% | |
| ACCAACATGATTCCAACTCC+TGG | - | chr3_3:12010154-12010173 | Msa0442470:intron | 45.0% | |
| TCCAGGAGTTGGAATCATGT+TGG | + | chr3_3:12010158-12010177 | None:intergenic | 45.0% | |
| !! | CCATTTGAGGCTGCATGTTT+TGG | + | chr3_3:12010186-12010205 | None:intergenic | 45.0% |
| CCAAAACATGCAGCCTCAAA+TGG | - | chr3_3:12010183-12010202 | Msa0442470:intron | 45.0% | |
| !! | TAAATAAAAAAAAAATTTAC+AGG | - | chr3_3:12008091-12008110 | Msa0442470:CDS | 5.0% |
| !! | AAATAAAAAAAAAATTTACA+GGG | - | chr3_3:12008092-12008111 | Msa0442470:CDS | 5.0% |
| !! | CATCCCAACGTTGATAACGG+TGG | - | chr3_3:12006958-12006977 | Msa0442470:CDS | 50.0% |
| GCACCACCGTTATCAACGTT+GGG | + | chr3_3:12006964-12006983 | None:intergenic | 50.0% | |
| AGCACCACCGTTATCAACGT+TGG | + | chr3_3:12006965-12006984 | None:intergenic | 50.0% | |
| ACAATGGCTCGTGCACAAGA+GGG | - | chr3_3:12007162-12007181 | Msa0442470:CDS | 50.0% | |
| ! | AATTTCTCTAGCTTCGCCGC+TGG | - | chr3_3:12008226-12008245 | Msa0442470:CDS | 50.0% |
| ACACTACGTGTCAGCTCAAC+GGG | + | chr3_3:12008646-12008665 | None:intergenic | 50.0% | |
| GACACTACGTGTCAGCTCAA+CGG | + | chr3_3:12008647-12008666 | None:intergenic | 50.0% | |
| GATGTTCGTGGCTTCGTCTA+TGG | - | chr3_3:12008700-12008719 | Msa0442470:CDS | 50.0% | |
| CACCATGATTCGTTCCCTGT+TGG | + | chr3_3:12009021-12009040 | None:intergenic | 50.0% | |
| CAACAGGGAACGAATCATGG+TGG | - | chr3_3:12009019-12009038 | Msa0442470:intron | 50.0% | |
| ! | AGGGAACGAATCATGGTGGA+AGG | - | chr3_3:12009023-12009042 | Msa0442470:intron | 50.0% |
| GCTTGCTCATGTTGGTCAAG+AGG | + | chr3_3:12009645-12009664 | None:intergenic | 50.0% | |
| ! | GTACTGCAGCTTGCTCATGT+TGG | + | chr3_3:12009653-12009672 | None:intergenic | 50.0% |
| CTCCTGAGTCATTACCTGCA+TGG | + | chr3_3:12010003-12010022 | None:intergenic | 50.0% | |
| GCAGGTAATGACTCAGGAGA+AGG | - | chr3_3:12010004-12010023 | Msa0442470:intron | 50.0% | |
| GTAGGAATCATGTTGCCAGC+TGG | + | chr3_3:12010064-12010083 | None:intergenic | 50.0% | |
| GACAATGGCTCGTGCACAAG+AGG | - | chr3_3:12007161-12007180 | Msa0442470:CDS | 55.0% | |
| CACTACGTGTCAGCTCAACG+GGG | + | chr3_3:12008645-12008664 | None:intergenic | 55.0% | |
| !! | AGCTGACACGTAGTGTCGAC+AGG | - | chr3_3:12008650-12008669 | Msa0442470:CDS | 55.0% |
| GTTCGGAAAATCTACGCGGC+TGG | - | chr3_3:12008758-12008777 | Msa0442470:CDS | 55.0% | |
| !! | GGAGGAATGCCGCTTTCCAA+AGG | + | chr3_3:12008988-12009007 | None:intergenic | 55.0% |
| AAAGCGGCATTCCTCCACCA+TGG | - | chr3_3:12008992-12009011 | Msa0442470:intron | 55.0% | |
| GGCCAACAGGGAACGAATCA+TGG | - | chr3_3:12009016-12009035 | Msa0442470:intron | 55.0% | |
| CGGAAAATCTACGCGGCTGG+TGG | - | chr3_3:12008761-12008780 | Msa0442470:CDS | 60.0% | |
| CTCCACCATGGTGGCCAACA+GGG | - | chr3_3:12009004-12009023 | Msa0442470:intron | 60.0% | |
| TTCCCTGTTGGCCACCATGG+TGG | + | chr3_3:12009009-12009028 | None:intergenic | 60.0% | |
| TCGTTCCCTGTTGGCCACCA+TGG | + | chr3_3:12009012-12009031 | None:intergenic | 60.0% | |
| GCGGCATTCCTCCACCATGG+TGG | - | chr3_3:12008995-12009014 | Msa0442470:intron | 65.0% | |
| CCTGTTGGCCACCATGGTGG+AGG | + | chr3_3:12009006-12009025 | None:intergenic | 65.0% | |
| CCTCCACCATGGTGGCCAAC+AGG | - | chr3_3:12009003-12009022 | Msa0442470:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 12006955 | 12010450 | 12006955 | ID=Msa0442470;Name=Msa0442470 |
| chr3_3 | mRNA | 12006955 | 12010450 | 12006955 | ID=Msa0442470-mRNA-1;Parent=Msa0442470;Name=Msa0442470-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|0.5|0.33|3|0|545 |
| chr3_3 | exon | 12010282 | 12010450 | 12010282 | ID=Msa0442470-mRNA-1:exon:2632;Parent=Msa0442470-mRNA-1 |
| chr3_3 | exon | 12007700 | 12008782 | 12007700 | ID=Msa0442470-mRNA-1:exon:2631;Parent=Msa0442470-mRNA-1 |
| chr3_3 | exon | 12006955 | 12007340 | 12006955 | ID=Msa0442470-mRNA-1:exon:2630;Parent=Msa0442470-mRNA-1 |
| chr3_3 | CDS | 12010282 | 12010450 | 12010282 | ID=Msa0442470-mRNA-1:cds;Parent=Msa0442470-mRNA-1 |
| chr3_3 | CDS | 12007700 | 12008782 | 12007700 | ID=Msa0442470-mRNA-1:cds;Parent=Msa0442470-mRNA-1 |
| chr3_3 | CDS | 12006955 | 12007340 | 12006955 | ID=Msa0442470-mRNA-1:cds;Parent=Msa0442470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
