Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0442630 | XP_003598025.2 | 77.247 | 523 | 114 | 4 | 1 | 520 | 20 | 540 | 0.0 | 813 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0442630 | sp|Q8L3W1|VRN1_ARATH | 27.463 | 335 | 160 | 7 | 269 | 520 | 6 | 340 | 4.75e-28 | 118 |
Msa0442630 | sp|Q8L3W1|VRN1_ARATH | 40.230 | 87 | 52 | 0 | 34 | 120 | 18 | 104 | 9.45e-17 | 85.1 |
Msa0442630 | sp|Q8L3W1|VRN1_ARATH | 37.273 | 110 | 61 | 2 | 141 | 245 | 228 | 334 | 5.10e-11 | 67.8 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0442630 | G7IYE4 | 77.247 | 523 | 114 | 4 | 1 | 520 | 20 | 540 | 0.0 | 813 |
Gene ID | Type | Classification |
---|---|---|
Msa0442630 | TF | B3 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0442630 | MtrunA17_Chr4g0009491 | 83.673 | 441 | 53 | 1 | 36 | 476 | 11 | 432 | 0.0 | 752 |
Msa0442630 | MtrunA17_Chr4g0009491 | 52.113 | 213 | 80 | 1 | 283 | 495 | 11 | 201 | 6.13e-64 | 214 |
Msa0442630 | MtrunA17_Chr4g0009491 | 53.171 | 205 | 73 | 2 | 18 | 199 | 220 | 424 | 1.77e-63 | 213 |
Msa0442630 | MtrunA17_Chr3g0077361 | 71.128 | 523 | 111 | 5 | 1 | 520 | 20 | 505 | 0.0 | 731 |
Msa0442630 | MtrunA17_Chr3g0077381 | 80.587 | 443 | 55 | 3 | 36 | 476 | 34 | 447 | 0.0 | 710 |
Msa0442630 | MtrunA17_Chr3g0077381 | 49.590 | 244 | 77 | 4 | 283 | 524 | 34 | 233 | 4.66e-61 | 207 |
Msa0442630 | MtrunA17_Chr3g0077381 | 51.707 | 205 | 69 | 3 | 18 | 199 | 242 | 439 | 2.14e-57 | 197 |
Msa0442630 | MtrunA17_Chr3g0077411 | 63.158 | 532 | 173 | 7 | 1 | 520 | 1 | 521 | 0.0 | 633 |
Msa0442630 | MtrunA17_Chr3g0077461 | 57.708 | 480 | 167 | 8 | 37 | 514 | 22 | 467 | 0.0 | 518 |
Msa0442630 | MtrunA17_Chr3g0077461 | 49.583 | 240 | 107 | 7 | 18 | 246 | 232 | 468 | 2.04e-59 | 203 |
Msa0442630 | MtrunA17_Chr3g0077451 | 65.833 | 240 | 71 | 2 | 283 | 521 | 10 | 239 | 1.51e-108 | 323 |
Msa0442630 | MtrunA17_Chr3g0077451 | 57.207 | 222 | 82 | 2 | 36 | 244 | 10 | 231 | 2.27e-75 | 238 |
Msa0442630 | MtrunA17_Chr5g0429931 | 65.401 | 237 | 82 | 0 | 284 | 520 | 10 | 246 | 5.43e-105 | 314 |
Msa0442630 | MtrunA17_Chr5g0429931 | 56.522 | 230 | 78 | 1 | 37 | 244 | 10 | 239 | 2.12e-78 | 246 |
Msa0442630 | MtrunA17_Chr3g0077431 | 63.810 | 210 | 65 | 2 | 313 | 521 | 1 | 200 | 1.82e-89 | 273 |
Msa0442630 | MtrunA17_Chr3g0077431 | 54.167 | 192 | 75 | 2 | 66 | 244 | 1 | 192 | 5.20e-58 | 191 |
Msa0442630 | MtrunA17_Chr3g0077421 | 62.381 | 210 | 67 | 2 | 313 | 520 | 1 | 200 | 6.39e-86 | 264 |
Msa0442630 | MtrunA17_Chr3g0077421 | 53.886 | 193 | 75 | 2 | 66 | 244 | 1 | 193 | 1.77e-55 | 185 |
Msa0442630 | MtrunA17_Chr3g0077441 | 62.381 | 210 | 67 | 2 | 313 | 520 | 1 | 200 | 6.39e-86 | 264 |
Msa0442630 | MtrunA17_Chr3g0077441 | 53.886 | 193 | 75 | 2 | 66 | 244 | 1 | 193 | 1.77e-55 | 185 |
Msa0442630 | MtrunA17_Chr3g0131891 | 29.373 | 303 | 171 | 7 | 258 | 519 | 6 | 306 | 3.82e-29 | 117 |
Msa0442630 | MtrunA17_Chr3g0131891 | 27.083 | 288 | 150 | 8 | 16 | 243 | 12 | 299 | 1.27e-19 | 90.1 |
Msa0442630 | MtrunA17_Chr7g0233561 | 27.974 | 311 | 175 | 7 | 261 | 522 | 8 | 318 | 1.81e-26 | 110 |
Msa0442630 | MtrunA17_Chr7g0233561 | 30.286 | 175 | 115 | 4 | 22 | 193 | 17 | 187 | 9.20e-18 | 84.7 |
Msa0442630 | MtrunA17_Chr1g0162441 | 45.455 | 99 | 54 | 0 | 269 | 367 | 7 | 105 | 8.00e-26 | 110 |
Msa0442630 | MtrunA17_Chr1g0162441 | 40.404 | 99 | 58 | 1 | 23 | 120 | 7 | 105 | 5.87e-20 | 92.4 |
Msa0442630 | MtrunA17_Chr8g0390841 | 28.956 | 297 | 158 | 9 | 269 | 516 | 39 | 331 | 1.05e-25 | 110 |
Msa0442630 | MtrunA17_Chr8g0390841 | 35.294 | 85 | 55 | 0 | 36 | 120 | 53 | 137 | 8.93e-14 | 73.9 |
Msa0442630 | MtrunA17_Chr3g0103181 | 29.391 | 279 | 156 | 8 | 268 | 515 | 11 | 279 | 7.27e-25 | 104 |
Msa0442630 | MtrunA17_Chr3g0103181 | 28.044 | 271 | 141 | 8 | 22 | 243 | 11 | 276 | 3.06e-21 | 94.0 |
Msa0442630 | MtrunA17_Chr3g0103171 | 28.358 | 268 | 149 | 6 | 284 | 515 | 5 | 265 | 2.37e-24 | 102 |
Msa0442630 | MtrunA17_Chr3g0103171 | 27.027 | 259 | 136 | 6 | 37 | 243 | 5 | 262 | 1.94e-19 | 88.2 |
Msa0442630 | MtrunA17_Chr1g0208771 | 28.283 | 297 | 148 | 11 | 284 | 525 | 12 | 298 | 8.24e-23 | 101 |
Msa0442630 | MtrunA17_Chr1g0208771 | 33.333 | 84 | 56 | 0 | 37 | 120 | 12 | 95 | 6.36e-12 | 67.8 |
Msa0442630 | MtrunA17_Chr7g0233521 | 29.057 | 265 | 158 | 4 | 285 | 519 | 2 | 266 | 1.01e-22 | 98.2 |
Msa0442630 | MtrunA17_Chr7g0233521 | 34.884 | 86 | 56 | 0 | 38 | 123 | 2 | 87 | 2.85e-15 | 76.3 |
Msa0442630 | MtrunA17_Chr7g0233531 | 27.372 | 274 | 151 | 7 | 285 | 519 | 2 | 266 | 5.98e-22 | 95.9 |
Msa0442630 | MtrunA17_Chr7g0233531 | 23.600 | 250 | 137 | 7 | 38 | 234 | 2 | 250 | 1.31e-14 | 74.3 |
Msa0442630 | MtrunA17_Chr4g0033961 | 41.176 | 102 | 60 | 0 | 266 | 367 | 3 | 104 | 1.18e-21 | 97.4 |
Msa0442630 | MtrunA17_Chr4g0033961 | 21.718 | 419 | 269 | 9 | 9 | 379 | 1 | 408 | 5.67e-17 | 83.2 |
Msa0442630 | MtrunA17_Chr1g0163071 | 28.231 | 294 | 141 | 8 | 285 | 516 | 2 | 287 | 1.56e-20 | 92.4 |
Msa0442630 | MtrunA17_Chr1g0163071 | 37.647 | 85 | 53 | 0 | 38 | 122 | 2 | 86 | 6.80e-14 | 72.8 |
Msa0442630 | MtrunA17_Chr1g0162411 | 39.806 | 103 | 62 | 0 | 269 | 371 | 7 | 109 | 5.77e-20 | 92.8 |
Msa0442630 | MtrunA17_Chr1g0162411 | 33.613 | 119 | 67 | 2 | 23 | 140 | 7 | 114 | 3.97e-14 | 74.7 |
Msa0442630 | MtrunA17_Chr7g0233541 | 27.586 | 290 | 147 | 10 | 285 | 519 | 2 | 283 | 7.73e-20 | 90.1 |
Msa0442630 | MtrunA17_Chr7g0233541 | 31.250 | 112 | 72 | 1 | 38 | 144 | 2 | 113 | 1.97e-15 | 77.0 |
Msa0442630 | MtrunA17_Chr7g0233571 | 35.200 | 125 | 81 | 0 | 268 | 392 | 9 | 133 | 1.75e-19 | 87.4 |
Msa0442630 | MtrunA17_Chr7g0233571 | 34.653 | 101 | 65 | 1 | 22 | 121 | 9 | 109 | 1.31e-15 | 76.3 |
Msa0442630 | MtrunA17_Chr5g0419201 | 34.579 | 107 | 70 | 0 | 261 | 367 | 8 | 114 | 2.39e-19 | 86.3 |
Msa0442630 | MtrunA17_Chr5g0419201 | 36.782 | 87 | 55 | 0 | 34 | 120 | 28 | 114 | 2.13e-16 | 77.8 |
Msa0442630 | MtrunA17_Chr4g0067431 | 28.328 | 293 | 157 | 8 | 268 | 509 | 14 | 304 | 3.35e-19 | 88.6 |
Msa0442630 | MtrunA17_Chr5g0421921 | 39.640 | 111 | 66 | 1 | 410 | 520 | 3 | 112 | 5.57e-19 | 82.8 |
Msa0442630 | MtrunA17_Chr5g0421731 | 39.640 | 111 | 66 | 1 | 410 | 520 | 3 | 112 | 5.57e-19 | 82.8 |
Msa0442630 | MtrunA17_Chr5g0421851 | 36.306 | 157 | 80 | 4 | 383 | 520 | 32 | 187 | 6.36e-19 | 84.7 |
Msa0442630 | MtrunA17_Chr1g0154161 | 24.199 | 281 | 177 | 7 | 268 | 515 | 29 | 306 | 1.79e-17 | 83.6 |
Msa0442630 | MtrunA17_Chr3g0103151 | 42.000 | 100 | 56 | 1 | 268 | 367 | 11 | 108 | 2.01e-17 | 79.7 |
Msa0442630 | MtrunA17_Chr3g0103151 | 37.374 | 99 | 61 | 1 | 22 | 120 | 11 | 108 | 2.68e-15 | 73.6 |
Msa0442630 | MtrunA17_Chr1g0163221 | 26.316 | 285 | 169 | 10 | 268 | 515 | 10 | 290 | 2.73e-17 | 83.6 |
Msa0442630 | MtrunA17_Chr1g0162421 | 48.276 | 58 | 30 | 0 | 283 | 340 | 7 | 64 | 3.13e-16 | 73.2 |
Msa0442630 | MtrunA17_Chr3g0103191 | 41.414 | 99 | 56 | 1 | 269 | 367 | 12 | 108 | 7.66e-16 | 77.4 |
Msa0442630 | MtrunA17_Chr3g0103191 | 37.755 | 98 | 60 | 1 | 23 | 120 | 12 | 108 | 1.91e-14 | 73.2 |
Msa0442630 | MtrunA17_Chr1g0163251 | 26.103 | 272 | 167 | 9 | 278 | 518 | 14 | 282 | 1.81e-15 | 78.6 |
Msa0442630 | MtrunA17_Chr1g0163131 | 24.242 | 297 | 165 | 9 | 268 | 513 | 17 | 304 | 2.53e-15 | 77.0 |
Msa0442630 | MtrunA17_Chr6g0467351 | 32.143 | 140 | 91 | 2 | 268 | 403 | 14 | 153 | 9.19e-14 | 70.9 |
Msa0442630 | MtrunA17_Chr3g0103201 | 27.650 | 217 | 127 | 6 | 328 | 515 | 5 | 220 | 1.15e-13 | 70.5 |
Msa0442630 | MtrunA17_Chr1g0163101 | 29.134 | 127 | 87 | 2 | 263 | 389 | 11 | 134 | 1.45e-12 | 66.2 |
Msa0442630 | MtrunA17_Chr1g0171611 | 24.627 | 268 | 179 | 7 | 267 | 517 | 7 | 268 | 3.59e-12 | 67.4 |
Msa0442630 | MtrunA17_Chr1g0163061 | 34.615 | 104 | 67 | 1 | 268 | 370 | 14 | 117 | 9.50e-12 | 65.9 |
Msa0442630 | MtrunA17_Chr1g0163231 | 23.297 | 279 | 181 | 9 | 267 | 517 | 7 | 280 | 3.60e-11 | 64.3 |
Msa0442630 | MtrunA17_Chr1g0154041 | 30.928 | 97 | 66 | 1 | 268 | 364 | 15 | 110 | 4.20e-11 | 65.5 |
Msa0442630 | MtrunA17_Chr6g0476181 | 36.082 | 97 | 59 | 2 | 285 | 381 | 2 | 95 | 7.06e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0442630 | AT3G18990.1 | 27.463 | 335 | 160 | 7 | 269 | 520 | 6 | 340 | 4.82e-29 | 118 |
Msa0442630 | AT3G18990.1 | 40.230 | 87 | 52 | 0 | 34 | 120 | 18 | 104 | 9.61e-18 | 85.1 |
Msa0442630 | AT3G18990.1 | 37.273 | 110 | 61 | 2 | 141 | 245 | 228 | 334 | 5.18e-12 | 67.8 |
Msa0442630 | AT3G18990.2 | 27.545 | 334 | 159 | 7 | 269 | 519 | 6 | 339 | 1.55e-28 | 117 |
Msa0442630 | AT3G18990.2 | 40.230 | 87 | 52 | 0 | 34 | 120 | 18 | 104 | 1.70e-17 | 84.7 |
Msa0442630 | AT3G18990.2 | 37.273 | 110 | 61 | 2 | 141 | 245 | 228 | 334 | 5.02e-12 | 68.2 |
Msa0442630 | AT3G18960.2 | 38.400 | 125 | 74 | 1 | 245 | 369 | 9 | 130 | 1.20e-18 | 84.7 |
Msa0442630 | AT3G18960.2 | 35.185 | 108 | 69 | 1 | 16 | 122 | 23 | 130 | 2.78e-15 | 75.1 |
Msa0442630 | AT3G18960.1 | 37.500 | 128 | 77 | 1 | 245 | 372 | 9 | 133 | 1.98e-18 | 84.3 |
Msa0442630 | AT3G18960.1 | 35.185 | 108 | 69 | 1 | 16 | 122 | 23 | 130 | 6.83e-15 | 74.3 |
Msa0442630 | AT1G49475.1 | 41.441 | 111 | 64 | 1 | 267 | 377 | 32 | 141 | 2.20e-18 | 84.0 |
Msa0442630 | AT1G49475.1 | 33.813 | 139 | 80 | 3 | 4 | 131 | 5 | 142 | 1.68e-15 | 75.5 |
Msa0442630 | AT4G01580.1 | 34.328 | 134 | 85 | 1 | 239 | 372 | 3 | 133 | 7.69e-18 | 82.0 |
Msa0442630 | AT4G01580.1 | 29.412 | 153 | 94 | 3 | 3 | 154 | 15 | 154 | 6.02e-16 | 76.6 |
Msa0442630 | AT1G26680.6 | 22.222 | 549 | 341 | 21 | 22 | 514 | 14 | 532 | 1.27e-17 | 86.7 |
Msa0442630 | AT1G26680.5 | 22.222 | 549 | 341 | 21 | 22 | 514 | 14 | 532 | 1.33e-17 | 87.0 |
Msa0442630 | AT1G26680.4 | 21.442 | 541 | 344 | 20 | 22 | 509 | 14 | 526 | 1.01e-14 | 77.8 |
Msa0442630 | AT1G26680.1 | 21.442 | 541 | 344 | 20 | 22 | 509 | 14 | 526 | 1.38e-14 | 77.4 |
Msa0442630 | AT3G18960.3 | 38.462 | 91 | 56 | 0 | 282 | 372 | 6 | 96 | 8.17e-14 | 70.1 |
Msa0442630 | AT3G18960.3 | 35.227 | 88 | 57 | 0 | 35 | 122 | 6 | 93 | 2.53e-12 | 65.9 |
Msa0442630 | AT1G26680.3 | 20.727 | 550 | 359 | 21 | 22 | 514 | 14 | 543 | 1.22e-13 | 74.3 |
Msa0442630 | AT1G49480.3 | 36.937 | 111 | 62 | 2 | 141 | 246 | 113 | 220 | 1.01e-12 | 68.2 |
Msa0442630 | AT1G49480.3 | 35.714 | 112 | 62 | 4 | 415 | 520 | 118 | 225 | 4.59e-11 | 63.2 |
Msa0442630 | AT1G49480.1 | 36.937 | 111 | 62 | 2 | 141 | 246 | 113 | 220 | 1.01e-12 | 68.2 |
Msa0442630 | AT1G49480.1 | 35.714 | 112 | 62 | 4 | 415 | 520 | 118 | 225 | 4.59e-11 | 63.2 |
Msa0442630 | AT1G49480.2 | 36.937 | 111 | 62 | 2 | 141 | 246 | 113 | 220 | 1.01e-12 | 68.2 |
Msa0442630 | AT1G49480.2 | 35.714 | 112 | 62 | 4 | 415 | 520 | 118 | 225 | 4.59e-11 | 63.2 |
Msa0442630 | AT2G24645.2 | 22.021 | 386 | 264 | 12 | 20 | 390 | 3 | 366 | 1.45e-12 | 70.1 |
Msa0442630 | AT1G26680.2 | 21.298 | 493 | 316 | 20 | 77 | 514 | 55 | 530 | 8.24e-12 | 68.6 |
Find 84 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATGCTTTCCTTGAGAATTT+TGG | 0.134641 | 3_3:+12548361 | None:intergenic |
GGCAGCACAATTCACTCTTT+TGG | 0.221967 | 3_3:+12549884 | None:intergenic |
ACTGCTTTCCTTGAGAGTTT+TGG | 0.223060 | 3_3:+12549648 | None:intergenic |
GATGAGTTTATAACAAGATT+TGG | 0.242784 | 3_3:-12548956 | Msa0442630:CDS |
TTGTTGTCCTTTACAAATTT+CGG | 0.251174 | 3_3:+12548276 | None:intergenic |
GATGAGTTTATAAATAGATT+TGG | 0.270080 | 3_3:-12550185 | Msa0442630:CDS |
AAATACTATTCGTTAGGATA+TGG | 0.294914 | 3_3:-12548818 | Msa0442630:CDS |
TATGGCTTTCATAAAATGTT+TGG | 0.299040 | 3_3:+12550912 | None:intergenic |
TACTATCTCTTTGTCATGAA+TGG | 0.314672 | 3_3:+12549248 | None:intergenic |
TGTATGATCTGGAGGAAGTA+TGG | 0.327796 | 3_3:+12550894 | None:intergenic |
TTCAAAACTCCAAGTACTAA+TGG | 0.347246 | 3_3:-12549939 | Msa0442630:CDS |
CTTTGATCTCCATTAGTACT+TGG | 0.349576 | 3_3:+12549930 | None:intergenic |
ATTTGCATTGAGAATGATTT+GGG | 0.350230 | 3_3:+12548312 | None:intergenic |
ATGAGTTTATAAATAGATTT+GGG | 0.360502 | 3_3:-12550184 | Msa0442630:CDS |
ATGAGTTTATAACAAGATTT+GGG | 0.367534 | 3_3:-12548955 | Msa0442630:CDS |
TGGAGTGCGATTGGAACATT+TGG | 0.367737 | 3_3:+12548381 | None:intergenic |
CTACTCCTATGAAAAGTTCC+AGG | 0.375640 | 3_3:-12548667 | Msa0442630:CDS |
ATGAATGGGCGAGGGAAGTA+TGG | 0.376143 | 3_3:+12549263 | None:intergenic |
TATTTGCATTGAGAATGATT+TGG | 0.397480 | 3_3:+12548311 | None:intergenic |
AATCTATTTATAAACTCATC+TGG | 0.412994 | 3_3:+12550188 | None:intergenic |
AATCTTGTTATAAACTCATC+TGG | 0.413404 | 3_3:+12548959 | None:intergenic |
GCGACGGAACACATCTTTGC+CGG | 0.419956 | 3_3:+12550959 | None:intergenic |
ATTCTGTAGTACGTTCCTTC+TGG | 0.420347 | 3_3:-12549713 | Msa0442630:intron |
TTTGCAAAATACTATTCGTT+AGG | 0.426106 | 3_3:-12548824 | Msa0442630:CDS |
CAATGACAGAAAACGAAGTA+AGG | 0.437201 | 3_3:-12549308 | Msa0442630:CDS |
GCTGCAACTTGTAGCACAAC+AGG | 0.444299 | 3_3:+12549494 | None:intergenic |
ACTATCTCTTTGTCATGAAT+GGG | 0.448674 | 3_3:+12549249 | None:intergenic |
AAGGGAAAACAATCTATTAG+AGG | 0.448831 | 3_3:-12549552 | Msa0442630:CDS |
TGATGGTCGTGAATGGGAAA+TGG | 0.450553 | 3_3:-12550126 | Msa0442630:CDS |
AATGGAGATCAAAGCATAAA+GGG | 0.451246 | 3_3:-12549921 | Msa0442630:CDS |
TTCTCAATGCAAATAACAAT+GGG | 0.452154 | 3_3:-12548303 | Msa0442630:CDS |
TAATGGAGATCAAAGCATAA+AGG | 0.452714 | 3_3:-12549922 | Msa0442630:CDS |
TTGGAATCTTTCTCCGGTGC+CGG | 0.453652 | 3_3:+12550931 | None:intergenic |
CTGTTCCTGATGGTCGTGAT+TGG | 0.457555 | 3_3:-12548904 | Msa0442630:CDS |
AAATGTTTGGAATCTTTCTC+CGG | 0.458549 | 3_3:+12550925 | None:intergenic |
TATTGTATTTCGAATACAAA+AGG | 0.459107 | 3_3:-12549617 | Msa0442630:CDS |
ATGTTTCGTGCGGTTGACTA+CGG | 0.465735 | 3_3:-12548186 | Msa0442630:CDS |
TCTTTCTCCGGTGCCGGTGA+CGG | 0.473264 | 3_3:+12550937 | None:intergenic |
GGGATTTCCGAAATTTGTAA+AGG | 0.476832 | 3_3:-12548283 | Msa0442630:CDS |
TTGTTCCTGATGGTCGTGAA+TGG | 0.477275 | 3_3:-12550133 | Msa0442630:CDS |
ATTTCCCATTCACGACCATC+AGG | 0.482051 | 3_3:+12550128 | None:intergenic |
CTGTGTGTTTGTTTCTCCAT+TGG | 0.483276 | 3_3:+12548694 | None:intergenic |
AAAATTCTCAAGGAAAGCAT+TGG | 0.485732 | 3_3:-12548359 | Msa0442630:CDS |
TCCGTCGCCGTCACCGGCAC+CGG | 0.490647 | 3_3:-12550944 | Msa0442630:CDS |
CTCTTTGTCATGAATGGGCG+AGG | 0.492559 | 3_3:+12549254 | None:intergenic |
ACTGTTGCCAATTGTTGCTA+AGG | 0.496870 | 3_3:+12550075 | None:intergenic |
GAATACTATTCCATCAGTTA+CGG | 0.500398 | 3_3:-12550047 | Msa0442630:CDS |
ATGTGTTCCGTCGCCGTCAC+CGG | 0.509296 | 3_3:-12550950 | Msa0442630:CDS |
ATTCTCAATGCAAATAACAA+TGG | 0.514820 | 3_3:-12548304 | Msa0442630:CDS |
TGTTCCTGATGGTCGTGAAT+GGG | 0.518981 | 3_3:-12550132 | Msa0442630:CDS |
CTCAAAACTCTAAGTACCAA+TGG | 0.522769 | 3_3:-12548710 | Msa0442630:CDS |
ACTGCCACTTGTTTCAACCC+TGG | 0.525622 | 3_3:+12548649 | None:intergenic |
TCCGGTGCCGGTGACGGCGA+CGG | 0.526161 | 3_3:+12550943 | None:intergenic |
TGAGTTGATCAAGGAGAAGC+CGG | 0.526203 | 3_3:-12548226 | Msa0442630:CDS |
TTGTGTGTTTGAGTTGATCA+AGG | 0.529271 | 3_3:-12548235 | Msa0442630:CDS |
GATGGTCGTGAATGGGAAAT+GGG | 0.538439 | 3_3:-12550125 | Msa0442630:CDS |
GTGGATTCAGTAAATTTGCA+AGG | 0.539955 | 3_3:-12549571 | Msa0442630:CDS |
TATTATATTTGATGTAACTT+CGG | 0.545296 | 3_3:-12548750 | Msa0442630:CDS |
TTTCATTCAAAATCCGTCAA+GGG | 0.556507 | 3_3:-12549834 | Msa0442630:CDS |
TACATATCTTTCAAATACGA+AGG | 0.575333 | 3_3:-12548791 | Msa0442630:CDS |
TTCATGCTCCAAAACTCTCA+AGG | 0.581396 | 3_3:-12549656 | Msa0442630:CDS |
AGGGAAAACAATCTATTAGA+GGG | 0.584707 | 3_3:-12549551 | Msa0442630:CDS |
TGGATTCAGTAAATTTGCAA+GGG | 0.590777 | 3_3:-12549570 | Msa0442630:CDS |
AAAACTCTCAAGGAAAGCAG+TGG | 0.591204 | 3_3:-12549646 | Msa0442630:CDS |
CAATGCAGCCTCCATGCGGA+AGG | 0.592466 | 3_3:-12549341 | Msa0442630:intron |
AATTGCTAAGCGAAATCTTG+TGG | 0.593067 | 3_3:-12548528 | Msa0442630:intron |
GACTGGGCACACCTTCCGCA+TGG | 0.593609 | 3_3:+12549330 | None:intergenic |
ATGTGTTTGAGCTGATCAAG+AGG | 0.597303 | 3_3:-12549520 | Msa0442630:CDS |
AATGACAGAAAACGAAGTAA+GGG | 0.598240 | 3_3:-12549307 | Msa0442630:CDS |
ATCGCACTCCAAAATTCTCA+AGG | 0.598710 | 3_3:-12548369 | Msa0442630:CDS |
ACAAGTTGCAGCAATTTGCA+CGG | 0.599452 | 3_3:-12549483 | Msa0442630:intron |
TACTCCTATGAAAAGTTCCA+GGG | 0.613948 | 3_3:-12548666 | Msa0442630:CDS |
AAGAAACAATGAAGACTCAC+CGG | 0.615286 | 3_3:-12550978 | None:intergenic |
GCTACAGTTACTGTTCCTGA+TGG | 0.628443 | 3_3:-12548914 | Msa0442630:CDS |
AGTTCCAGGGTTGAAACAAG+TGG | 0.632824 | 3_3:-12548653 | Msa0442630:CDS |
TCATCAATGCGAATAACGAG+TGG | 0.633101 | 3_3:-12549590 | Msa0442630:CDS |
AAACTCTCAAGGAAAGCAGT+GGG | 0.637619 | 3_3:-12549645 | Msa0442630:CDS |
GAAATGGGACTGACGAAATG+TGG | 0.643468 | 3_3:-12550110 | Msa0442630:CDS |
TCTTTGTCATGAATGGGCGA+GGG | 0.647829 | 3_3:+12549255 | None:intergenic |
CATTCATCATCACAGTAGAG+AGG | 0.649717 | 3_3:+12548158 | None:intergenic |
AAAAGTCACAATGTTTCGTG+CGG | 0.653466 | 3_3:-12548196 | Msa0442630:CDS |
AAGGACAACAATCTGACACA+TGG | 0.654644 | 3_3:-12548264 | Msa0442630:CDS |
TGGGCACACCTTCCGCATGG+AGG | 0.664596 | 3_3:+12549333 | None:intergenic |
ATTGCAATGCAGCCTCCATG+CGG | 0.701402 | 3_3:-12549345 | Msa0442630:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTTTTTATTCTTATCAT+CGG | + | chr3_3:12549985-12550004 | None:intergenic | 10.0% |
!! | GCATAAAAATATAAAACAAT+AGG | + | chr3_3:12548383-12548402 | None:intergenic | 15.0% |
!! | ATTAATTATTAGTGTATGTT+TGG | - | chr3_3:12548447-12548466 | Msa0442630:intron | 15.0% |
!! | CACAAATTATTTACAAATTT+GGG | + | chr3_3:12548755-12548774 | None:intergenic | 15.0% |
!! | ACACAAATTATTTACAAATT+TGG | + | chr3_3:12548756-12548775 | None:intergenic | 15.0% |
!! | ATGAGTTTATAAATAGATTT+GGG | - | chr3_3:12548953-12548972 | Msa0442630:CDS | 15.0% |
!!! | TTTTTTTTATTCTTATCATC+GGG | + | chr3_3:12549984-12550003 | None:intergenic | 15.0% |
!! | TATTATATTTGATGTAACTT+CGG | - | chr3_3:12550387-12550406 | Msa0442630:intron | 15.0% |
!!! | CAATTTTTGAACAAAAATAA+GGG | + | chr3_3:12550594-12550613 | None:intergenic | 15.0% |
!! | AAATATAAAACAATAGGACT+AGG | + | chr3_3:12548377-12548396 | None:intergenic | 20.0% |
!!! | ATGTTTGAACTAATTTTTGT+GGG | + | chr3_3:12548797-12548816 | None:intergenic | 20.0% |
!! | AATCTATTTATAAACTCATC+TGG | + | chr3_3:12548952-12548971 | None:intergenic | 20.0% |
!! | GATGAGTTTATAAATAGATT+TGG | - | chr3_3:12548952-12548971 | Msa0442630:CDS | 20.0% |
!!! | TTTTTAGATTTCAAGTATGA+AGG | - | chr3_3:12549117-12549136 | Msa0442630:intron | 20.0% |
!!! | TTTTAGATTTCAAGTATGAA+GGG | - | chr3_3:12549118-12549137 | Msa0442630:intron | 20.0% |
!!! | AATGAAAATAAGGGTTTTTT+GGG | + | chr3_3:12549290-12549309 | None:intergenic | 20.0% |
!!! | ATGTTTGAGTTATATACTTA+CGG | - | chr3_3:12549376-12549395 | Msa0442630:intron | 20.0% |
!!! | TAAAAAGTATTTGATGCTAA+TGG | - | chr3_3:12549453-12549472 | Msa0442630:intron | 20.0% |
!! | TATTGTATTTCGAATACAAA+AGG | - | chr3_3:12549520-12549539 | Msa0442630:CDS | 20.0% |
!!! | TTTTTTTATTCTTATCATCG+GGG | + | chr3_3:12549983-12550002 | None:intergenic | 20.0% |
!! | ATGAGTTTATAACAAGATTT+GGG | - | chr3_3:12550182-12550201 | Msa0442630:CDS | 20.0% |
!!! | GCAATTTTTGAACAAAAATA+AGG | + | chr3_3:12550595-12550614 | None:intergenic | 20.0% |
!!! | GAATTTTACTTTGTAGTTTT+TGG | - | chr3_3:12550635-12550654 | Msa0442630:intron | 20.0% |
! | TATGGCTTTCATAAAATGTT+TGG | + | chr3_3:12548228-12548247 | None:intergenic | 25.0% |
!!! | ACTATTTCTTTTGTATGATC+TGG | + | chr3_3:12548257-12548276 | None:intergenic | 25.0% |
!! | CATTTTCTATCTCTCTTTTT+TGG | - | chr3_3:12548283-12548302 | Msa0442630:CDS | 25.0% |
!!! | TTGTATGACTTTTAACTTTG+AGG | - | chr3_3:12548312-12548331 | Msa0442630:CDS | 25.0% |
!! | CATGTTTGAACTAATTTTTG+TGG | + | chr3_3:12548798-12548817 | None:intergenic | 25.0% |
! | ATCAATCAATCTTCAAAAGA+GGG | + | chr3_3:12548885-12548904 | None:intergenic | 25.0% |
!! | TTCATCAGTTTTACTACTAT+AGG | + | chr3_3:12548908-12548927 | None:intergenic | 25.0% |
!!! | GAATGAAAATAAGGGTTTTT+TGG | + | chr3_3:12549291-12549310 | None:intergenic | 25.0% |
!! | CGGATTTTGAATGAAAATAA+GGG | + | chr3_3:12549299-12549318 | None:intergenic | 25.0% |
!! | ACGGATTTTGAATGAAAATA+AGG | + | chr3_3:12549300-12549319 | None:intergenic | 25.0% |
! | ACTACTTCAAAACATCAAAT+TGG | - | chr3_3:12550075-12550094 | Msa0442630:CDS | 25.0% |
! | CTACTTCAAAACATCAAATT+GGG | - | chr3_3:12550076-12550095 | Msa0442630:CDS | 25.0% |
! | TACTTCAAAACATCAAATTG+GGG | - | chr3_3:12550077-12550096 | Msa0442630:CDS | 25.0% |
! | CTATAATACCAAACTTCAAA+AGG | + | chr3_3:12550124-12550143 | None:intergenic | 25.0% |
! | GGTATTATAGTATAACCAAT+AGG | - | chr3_3:12550134-12550153 | Msa0442630:CDS | 25.0% |
!! | AATCTTGTTATAAACTCATC+TGG | + | chr3_3:12550181-12550200 | None:intergenic | 25.0% |
! | GATGAGTTTATAACAAGATT+TGG | - | chr3_3:12550181-12550200 | Msa0442630:CDS | 25.0% |
! | TTTGCAAAATACTATTCGTT+AGG | - | chr3_3:12550313-12550332 | Msa0442630:intron | 25.0% |
! | AAATACTATTCGTTAGGATA+TGG | - | chr3_3:12550319-12550338 | Msa0442630:intron | 25.0% |
! | TACATATCTTTCAAATACGA+AGG | - | chr3_3:12550346-12550365 | Msa0442630:intron | 25.0% |
! | AAAAAGCTCAAAATCAAGTT+TGG | - | chr3_3:12550517-12550536 | Msa0442630:intron | 25.0% |
!!! | GTTTTTTGGATTGAATTCAT+TGG | + | chr3_3:12550572-12550591 | None:intergenic | 25.0% |
!!! | GAACAAAAATAAGGGTTTTT+TGG | + | chr3_3:12550586-12550605 | None:intergenic | 25.0% |
! | ATTTGCATTGAGAATGATTT+GGG | + | chr3_3:12550828-12550847 | None:intergenic | 25.0% |
! | TATTTGCATTGAGAATGATT+TGG | + | chr3_3:12550829-12550848 | None:intergenic | 25.0% |
! | ATTCTCAATGCAAATAACAA+TGG | - | chr3_3:12550833-12550852 | Msa0442630:intron | 25.0% |
! | TTCTCAATGCAAATAACAAT+GGG | - | chr3_3:12550834-12550853 | Msa0442630:intron | 25.0% |
! | TTGTTGTCCTTTACAAATTT+CGG | + | chr3_3:12550864-12550883 | None:intergenic | 25.0% |
! | AAATGTTTGGAATCTTTCTC+CGG | + | chr3_3:12548215-12548234 | None:intergenic | 30.0% |
! | ATTTCTTTTGTATGATCTGG+AGG | + | chr3_3:12548254-12548273 | None:intergenic | 30.0% |
TTAGGATATATTCTTCGAGT+CGG | - | chr3_3:12548686-12548705 | Msa0442630:CDS | 30.0% | |
! | ACAGGTTTAGGATATATTCT+AGG | - | chr3_3:12548713-12548732 | Msa0442630:CDS | 30.0% |
! | TTTGAACTAATTTTTGTGGG+AGG | + | chr3_3:12548794-12548813 | None:intergenic | 30.0% |
TCAATCAATCTTCAAAAGAG+GGG | + | chr3_3:12548884-12548903 | None:intergenic | 30.0% | |
GATCAATCAATCTTCAAAAG+AGG | + | chr3_3:12548886-12548905 | None:intergenic | 30.0% | |
GAATACTATTCCATCAGTTA+CGG | - | chr3_3:12549090-12549109 | Msa0442630:intron | 30.0% | |
TAAAAAACAACCGTAACTGA+TGG | + | chr3_3:12549103-12549122 | None:intergenic | 30.0% | |
!!! | TTAGTACTTGGAGTTTTGAA+TGG | + | chr3_3:12549198-12549217 | None:intergenic | 30.0% |
TTCAAAACTCCAAGTACTAA+TGG | - | chr3_3:12549198-12549217 | Msa0442630:intron | 30.0% | |
TAATGGAGATCAAAGCATAA+AGG | - | chr3_3:12549215-12549234 | Msa0442630:intron | 30.0% | |
AATGGAGATCAAAGCATAAA+GGG | - | chr3_3:12549216-12549235 | Msa0442630:intron | 30.0% | |
! | TTTTCATTCAAAATCCGTCA+AGG | - | chr3_3:12549302-12549321 | Msa0442630:CDS | 30.0% |
TTTCATTCAAAATCCGTCAA+GGG | - | chr3_3:12549303-12549322 | Msa0442630:CDS | 30.0% | |
!! | GATTTCACTTTCTAGTCTTT+TGG | - | chr3_3:12549341-12549360 | Msa0442630:intron | 30.0% |
!! | TACTTTTTAGCAAAACCAGA+AGG | + | chr3_3:12549442-12549461 | None:intergenic | 30.0% |
TGGATTCAGTAAATTTGCAA+GGG | - | chr3_3:12549567-12549586 | Msa0442630:CDS | 30.0% | |
AAGGGAAAACAATCTATTAG+AGG | - | chr3_3:12549585-12549604 | Msa0442630:CDS | 30.0% | |
AGGGAAAACAATCTATTAGA+GGG | - | chr3_3:12549586-12549605 | Msa0442630:CDS | 30.0% | |
! | TCTTTTAATGTCTGAACTGT+TGG | - | chr3_3:12549733-12549752 | Msa0442630:intron | 30.0% |
AATGACAGAAAACGAAGTAA+GGG | - | chr3_3:12549830-12549849 | Msa0442630:CDS | 30.0% | |
!! | GGAATCGAAACATTTTAAGA+AGG | - | chr3_3:12549851-12549870 | Msa0442630:CDS | 30.0% |
ACTATCTCTTTGTCATGAAT+GGG | + | chr3_3:12549891-12549910 | None:intergenic | 30.0% | |
TACTATCTCTTTGTCATGAA+TGG | + | chr3_3:12549892-12549911 | None:intergenic | 30.0% | |
ACAGTAACTCAAAACAGAAA+GGG | + | chr3_3:12549920-12549939 | None:intergenic | 30.0% | |
AACAGTAACTCAAAACAGAA+AGG | + | chr3_3:12549921-12549940 | None:intergenic | 30.0% | |
CTAGACACCTAAATTTGATT+TGG | + | chr3_3:12550033-12550052 | None:intergenic | 30.0% | |
AATACCAAACTTCAAAAGGA+GGG | + | chr3_3:12550120-12550139 | None:intergenic | 30.0% | |
TAATACCAAACTTCAAAAGG+AGG | + | chr3_3:12550121-12550140 | None:intergenic | 30.0% | |
! | ACATTTTCTTTTGCAACGAA+TGG | - | chr3_3:12550284-12550303 | Msa0442630:intron | 30.0% |
! | AATGCTTTCCTTGAGAATTT+TGG | + | chr3_3:12550779-12550798 | None:intergenic | 30.0% |
! | AAAATTCTCAAGGAAAGCAT+TGG | - | chr3_3:12550778-12550797 | Msa0442630:intron | 30.0% |
! | GATTGATTGAGCATGTGTTT+TGG | - | chr3_3:12548503-12548522 | Msa0442630:intron | 35.0% |
!! | GAGCATGTGTTTTGGATTAA+TGG | - | chr3_3:12548511-12548530 | Msa0442630:intron | 35.0% |
ATGCAAAAAACTTCGAGTCA+GGG | - | chr3_3:12548656-12548675 | Msa0442630:CDS | 35.0% | |
TAGGATATATTCTTCGAGTC+GGG | - | chr3_3:12548687-12548706 | Msa0442630:CDS | 35.0% | |
!! | GCTATCATTTTTGTTCCTGA+TGG | - | chr3_3:12548994-12549013 | Msa0442630:intron | 35.0% |
! | ACGTTTTCCTTAGCAACAAT+TGG | - | chr3_3:12549055-12549074 | Msa0442630:intron | 35.0% |
CTTTGATCTCCATTAGTACT+TGG | + | chr3_3:12549210-12549229 | None:intergenic | 35.0% | |
!!! | GTTTTTTGGGTTGAATTCAC+TGG | + | chr3_3:12549277-12549296 | None:intergenic | 35.0% |
GTGGATTCAGTAAATTTGCA+AGG | - | chr3_3:12549566-12549585 | Msa0442630:CDS | 35.0% | |
! | TGAACTGTTGGTGAACTTAA+TGG | - | chr3_3:12549745-12549764 | Msa0442630:intron | 35.0% |
!! | TTCGTTTTCTGTCATTGACT+GGG | + | chr3_3:12549826-12549845 | None:intergenic | 35.0% |
CAATGACAGAAAACGAAGTA+AGG | - | chr3_3:12549829-12549848 | Msa0442630:CDS | 35.0% | |
GACGTGTCCAAATCAAATTT+AGG | - | chr3_3:12550023-12550042 | Msa0442630:CDS | 35.0% | |
!!! | TTGGTACTTAGAGTTTTGAG+TGG | + | chr3_3:12550427-12550446 | None:intergenic | 35.0% |
CTCAAAACTCTAAGTACCAA+TGG | - | chr3_3:12550427-12550446 | Msa0442630:intron | 35.0% | |
TACTCCTATGAAAAGTTCCA+GGG | - | chr3_3:12550471-12550490 | Msa0442630:intron | 35.0% | |
!! | ACATGCTTTTAAAAGTGCAG+AGG | - | chr3_3:12550540-12550559 | Msa0442630:intron | 35.0% |
AATTGCTAAGCGAAATCTTG+TGG | - | chr3_3:12550609-12550628 | Msa0442630:intron | 35.0% | |
GGGATTTCCGAAATTTGTAA+AGG | - | chr3_3:12550854-12550873 | Msa0442630:intron | 35.0% | |
!! | TTGTGTGTTTGAGTTGATCA+AGG | - | chr3_3:12550902-12550921 | Msa0442630:CDS | 35.0% |
! | ATTGTGACTTTTAGCACAAC+CGG | + | chr3_3:12550933-12550952 | None:intergenic | 35.0% |
AAAAGTCACAATGTTTCGTG+CGG | - | chr3_3:12550941-12550960 | Msa0442630:CDS | 35.0% | |
TGTATGATCTGGAGGAAGTA+TGG | + | chr3_3:12548246-12548265 | None:intergenic | 40.0% | |
AGGACTAGGTACACACATAT+AGG | + | chr3_3:12548363-12548382 | None:intergenic | 40.0% | |
TTGAGCCTACAGATCATGTT+TGG | - | chr3_3:12548633-12548652 | Msa0442630:CDS | 40.0% | |
TGCATCCAAACATGATCTGT+AGG | + | chr3_3:12548641-12548660 | None:intergenic | 40.0% | |
GATGCAAAAAACTTCGAGTC+AGG | - | chr3_3:12548655-12548674 | Msa0442630:CDS | 40.0% | |
AGGATATATTCTTCGAGTCG+GGG | - | chr3_3:12548688-12548707 | Msa0442630:CDS | 40.0% | |
ACTGTTGCCAATTGTTGCTA+AGG | + | chr3_3:12549065-12549084 | None:intergenic | 40.0% | |
!!! | ACTCTTTTGGGATCAGAGTT+AGG | + | chr3_3:12549243-12549262 | None:intergenic | 40.0% |
! | GCAGCACAATTCACTCTTTT+GGG | + | chr3_3:12549255-12549274 | None:intergenic | 40.0% |
AGGAACGTACTACAGAATGA+AGG | + | chr3_3:12549422-12549441 | None:intergenic | 40.0% | |
ATTCTGTAGTACGTTCCTTC+TGG | - | chr3_3:12549424-12549443 | Msa0442630:intron | 40.0% | |
!!! | TGAGAGTTTTGGAGCATGAA+CGG | + | chr3_3:12549481-12549500 | None:intergenic | 40.0% |
TTCATGCTCCAAAACTCTCA+AGG | - | chr3_3:12549481-12549500 | Msa0442630:intron | 40.0% | |
! | ACTGCTTTCCTTGAGAGTTT+TGG | + | chr3_3:12549492-12549511 | None:intergenic | 40.0% |
AAAACTCTCAAGGAAAGCAG+TGG | - | chr3_3:12549491-12549510 | Msa0442630:CDS | 40.0% | |
AAACTCTCAAGGAAAGCAGT+GGG | - | chr3_3:12549492-12549511 | Msa0442630:CDS | 40.0% | |
TCATCAATGCGAATAACGAG+TGG | - | chr3_3:12549547-12549566 | Msa0442630:CDS | 40.0% | |
ATGTGTTTGAGCTGATCAAG+AGG | - | chr3_3:12549617-12549636 | Msa0442630:CDS | 40.0% | |
ACAAGTTGCAGCAATTTGCA+CGG | - | chr3_3:12549654-12549673 | Msa0442630:CDS | 40.0% | |
! | CTTCGTTTTCTGTCATTGAC+TGG | + | chr3_3:12549827-12549846 | None:intergenic | 40.0% |
!!! | GTTACCCTCCTTTTGAAGTT+TGG | - | chr3_3:12550113-12550132 | Msa0442630:CDS | 40.0% |
CTGCAGTGATAACAACCTAT+TGG | + | chr3_3:12550152-12550171 | None:intergenic | 40.0% | |
! | ATTTTCCAATCACGACCATC+AGG | + | chr3_3:12550241-12550260 | None:intergenic | 40.0% |
! | CTGTGTGTTTGTTTCTCCAT+TGG | + | chr3_3:12550446-12550465 | None:intergenic | 40.0% |
! | CTGGAACTTTTCATAGGAGT+AGG | + | chr3_3:12550472-12550491 | None:intergenic | 40.0% |
CTACTCCTATGAAAAGTTCC+AGG | - | chr3_3:12550470-12550489 | Msa0442630:intron | 40.0% | |
! | TCAACCCTGGAACTTTTCAT+AGG | + | chr3_3:12550478-12550497 | None:intergenic | 40.0% |
!!! | TGAGAATTTTGGAGTGCGAT+TGG | + | chr3_3:12550768-12550787 | None:intergenic | 40.0% |
ATCGCACTCCAAAATTCTCA+AGG | - | chr3_3:12550768-12550787 | Msa0442630:intron | 40.0% | |
AAGGACAACAATCTGACACA+TGG | - | chr3_3:12550873-12550892 | Msa0442630:intron | 40.0% | |
!!! | GTGGGAGGCAACATTGATTT+TGG | + | chr3_3:12548779-12548798 | None:intergenic | 45.0% |
TTGTTCCTGATGGTCGTGAA+TGG | - | chr3_3:12549004-12549023 | Msa0442630:intron | 45.0% | |
TGTTCCTGATGGTCGTGAAT+GGG | - | chr3_3:12549005-12549024 | Msa0442630:intron | 45.0% | |
ATTTCCCATTCACGACCATC+AGG | + | chr3_3:12549012-12549031 | None:intergenic | 45.0% | |
TGATGGTCGTGAATGGGAAA+TGG | - | chr3_3:12549011-12549030 | Msa0442630:intron | 45.0% | |
GATGGTCGTGAATGGGAAAT+GGG | - | chr3_3:12549012-12549031 | Msa0442630:intron | 45.0% | |
GAAATGGGACTGACGAAATG+TGG | - | chr3_3:12549027-12549046 | Msa0442630:intron | 45.0% | |
! | GGCAGCACAATTCACTCTTT+TGG | + | chr3_3:12549256-12549275 | None:intergenic | 45.0% |
!!! | ATCCGTCAAGGGCATTTTTG+CGG | - | chr3_3:12549314-12549333 | Msa0442630:CDS | 45.0% |
CGTACTACAGAATGAAGGAG+AGG | + | chr3_3:12549417-12549436 | None:intergenic | 45.0% | |
TCTTTGTCATGAATGGGCGA+GGG | + | chr3_3:12549885-12549904 | None:intergenic | 45.0% | |
GCTACAGTTACTGTTCCTGA+TGG | - | chr3_3:12550223-12550242 | Msa0442630:intron | 45.0% | |
AGTTCCAGGGTTGAAACAAG+TGG | - | chr3_3:12550484-12550503 | Msa0442630:intron | 45.0% | |
TGGAGTGCGATTGGAACATT+TGG | + | chr3_3:12550759-12550778 | None:intergenic | 45.0% | |
!! | TGAGTTGATCAAGGAGAAGC+CGG | - | chr3_3:12550911-12550930 | Msa0442630:CDS | 45.0% |
ATGTTTCGTGCGGTTGACTA+CGG | - | chr3_3:12550951-12550970 | Msa0442630:CDS | 45.0% | |
TTGGAATCTTTCTCCGGTGC+CGG | + | chr3_3:12548209-12548228 | None:intergenic | 50.0% | |
TCGAGTCAGGGCTACAAGTT+AGG | - | chr3_3:12548668-12548687 | Msa0442630:CDS | 50.0% | |
CACCGCAAAAATGCCCTTGA+CGG | + | chr3_3:12549319-12549338 | None:intergenic | 50.0% | |
!!! | TCAAGGGCATTTTTGCGGTG+AGG | - | chr3_3:12549319-12549338 | Msa0442630:CDS | 50.0% |
GCTGCAACTTGTAGCACAAC+AGG | + | chr3_3:12549646-12549665 | None:intergenic | 50.0% | |
ATTGCAATGCAGCCTCCATG+CGG | - | chr3_3:12549792-12549811 | Msa0442630:intron | 50.0% | |
ATGAATGGGCGAGGGAAGTA+TGG | + | chr3_3:12549877-12549896 | None:intergenic | 50.0% | |
CTCTTTGTCATGAATGGGCG+AGG | + | chr3_3:12549886-12549905 | None:intergenic | 50.0% | |
CTGTTCCTGATGGTCGTGAT+TGG | - | chr3_3:12550233-12550252 | Msa0442630:intron | 50.0% | |
! | ACTGCCACTTGTTTCAACCC+TGG | + | chr3_3:12550491-12550510 | None:intergenic | 50.0% |
GCGACGGAACACATCTTTGC+CGG | + | chr3_3:12548181-12548200 | None:intergenic | 55.0% | |
ATTCTTCGAGTCGGGGCAAC+AGG | - | chr3_3:12548695-12548714 | Msa0442630:CDS | 55.0% | |
ATGTGTTCCGTCGCCGTCAC+CGG | - | chr3_3:12548187-12548206 | Msa0442630:CDS | 60.0% | |
!! | TCTTTCTCCGGTGCCGGTGA+CGG | + | chr3_3:12548203-12548222 | None:intergenic | 60.0% |
CGAGTCGGGGCAACAGGTTT+AGG | - | chr3_3:12548701-12548720 | Msa0442630:CDS | 60.0% | |
CAATGCAGCCTCCATGCGGA+AGG | - | chr3_3:12549796-12549815 | Msa0442630:intron | 60.0% | |
TGGGCACACCTTCCGCATGG+AGG | + | chr3_3:12549807-12549826 | None:intergenic | 65.0% | |
GACTGGGCACACCTTCCGCA+TGG | + | chr3_3:12549810-12549829 | None:intergenic | 65.0% | |
TCCGTCGCCGTCACCGGCAC+CGG | - | chr3_3:12548193-12548212 | Msa0442630:CDS | 75.0% | |
!! | TCCGGTGCCGGTGACGGCGA+CGG | + | chr3_3:12548197-12548216 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_3 | gene | 12548167 | 12550992 | 12548167 | ID=Msa0442630;Name=Msa0442630 |
chr3_3 | mRNA | 12548167 | 12550992 | 12548167 | ID=Msa0442630-mRNA-1;Parent=Msa0442630;Name=Msa0442630-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.4|0.16|1|1|1|6|0|526 |
chr3_3 | exon | 12550885 | 12550992 | 12550885 | ID=Msa0442630-mRNA-1:exon:2710;Parent=Msa0442630-mRNA-1 |
chr3_3 | exon | 12549824 | 12550216 | 12549824 | ID=Msa0442630-mRNA-1:exon:2709;Parent=Msa0442630-mRNA-1 |
chr3_3 | exon | 12549484 | 12549726 | 12549484 | ID=Msa0442630-mRNA-1:exon:2708;Parent=Msa0442630-mRNA-1 |
chr3_3 | exon | 12549251 | 12549355 | 12549251 | ID=Msa0442630-mRNA-1:exon:2707;Parent=Msa0442630-mRNA-1 |
chr3_3 | exon | 12548529 | 12548987 | 12548529 | ID=Msa0442630-mRNA-1:exon:2706;Parent=Msa0442630-mRNA-1 |
chr3_3 | exon | 12548167 | 12548439 | 12548167 | ID=Msa0442630-mRNA-1:exon:2705;Parent=Msa0442630-mRNA-1 |
chr3_3 | CDS | 12550885 | 12550992 | 12550885 | ID=Msa0442630-mRNA-1:cds;Parent=Msa0442630-mRNA-1 |
chr3_3 | CDS | 12549824 | 12550216 | 12549824 | ID=Msa0442630-mRNA-1:cds;Parent=Msa0442630-mRNA-1 |
chr3_3 | CDS | 12549484 | 12549726 | 12549484 | ID=Msa0442630-mRNA-1:cds;Parent=Msa0442630-mRNA-1 |
chr3_3 | CDS | 12549251 | 12549355 | 12549251 | ID=Msa0442630-mRNA-1:cds;Parent=Msa0442630-mRNA-1 |
chr3_3 | CDS | 12548529 | 12548987 | 12548529 | ID=Msa0442630-mRNA-1:cds;Parent=Msa0442630-mRNA-1 |
chr3_3 | CDS | 12548167 | 12548439 | 12548167 | ID=Msa0442630-mRNA-1:cds;Parent=Msa0442630-mRNA-1 |
Gene Sequence |
Protein sequence |