Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442960 | AFK49677.1 | 92.466 | 292 | 5 | 1 | 1 | 275 | 1 | 292 | 0.0 | 548 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442960 | sp|Q2YDP3|NC2A_BOVIN | 44.030 | 134 | 68 | 2 | 2 | 135 | 5 | 131 | 1.71e-30 | 116 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442960 | I3TAY5 | 92.466 | 292 | 5 | 1 | 1 | 275 | 1 | 292 | 0.0 | 548 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0442960 | TF | NF-YC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442960 | MtrunA17_Chr3g0081161 | 92.123 | 292 | 6 | 1 | 1 | 275 | 1 | 292 | 0.0 | 545 |
| Msa0442960 | MtrunA17_Chr8g0354151 | 63.514 | 296 | 73 | 8 | 1 | 263 | 1 | 294 | 2.76e-108 | 315 |
| Msa0442960 | MtrunA17_Chr5g0441241 | 41.754 | 285 | 114 | 9 | 18 | 262 | 1 | 273 | 8.66e-51 | 168 |
| Msa0442960 | MtrunA17_Chr5g0420401 | 85.393 | 89 | 13 | 0 | 154 | 242 | 51 | 139 | 4.76e-49 | 159 |
| Msa0442960 | MtrunA17_Chr2g0288481 | 40.449 | 89 | 50 | 1 | 1 | 86 | 75 | 163 | 1.63e-12 | 65.9 |
| Msa0442960 | MtrunA17_Chr3g0132191 | 40.506 | 79 | 47 | 0 | 8 | 86 | 55 | 133 | 4.99e-12 | 63.9 |
| Msa0442960 | MtrunA17_Chr1g0191681 | 39.744 | 78 | 47 | 0 | 9 | 86 | 102 | 179 | 5.46e-12 | 64.3 |
| Msa0442960 | MtrunA17_Chr7g0272991 | 39.744 | 78 | 47 | 0 | 9 | 86 | 102 | 179 | 7.89e-12 | 63.9 |
| Msa0442960 | MtrunA17_Chr2g0310741 | 41.026 | 78 | 46 | 0 | 9 | 86 | 104 | 181 | 4.78e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442960 | AT3G12480.1 | 47.959 | 294 | 110 | 11 | 1 | 263 | 1 | 282 | 2.75e-67 | 211 |
| Msa0442960 | AT5G19490.1 | 69.091 | 110 | 28 | 2 | 1 | 110 | 1 | 104 | 7.22e-47 | 157 |
| Msa0442960 | AT1G54830.2 | 41.026 | 78 | 46 | 0 | 9 | 86 | 71 | 148 | 2.69e-12 | 65.1 |
| Msa0442960 | AT1G54830.3 | 41.026 | 78 | 46 | 0 | 9 | 86 | 71 | 148 | 2.69e-12 | 65.1 |
| Msa0442960 | AT1G54830.1 | 41.026 | 78 | 46 | 0 | 9 | 86 | 71 | 148 | 2.69e-12 | 65.1 |
| Msa0442960 | AT1G08970.3 | 41.026 | 78 | 46 | 0 | 9 | 86 | 81 | 158 | 6.49e-12 | 64.3 |
| Msa0442960 | AT1G08970.4 | 41.026 | 78 | 46 | 0 | 9 | 86 | 81 | 158 | 6.49e-12 | 64.3 |
| Msa0442960 | AT1G08970.2 | 41.026 | 78 | 46 | 0 | 9 | 86 | 81 | 158 | 6.49e-12 | 64.3 |
| Msa0442960 | AT1G08970.1 | 41.026 | 78 | 46 | 0 | 9 | 86 | 81 | 158 | 6.49e-12 | 64.3 |
| Msa0442960 | AT3G48590.1 | 40.506 | 79 | 47 | 0 | 8 | 86 | 65 | 143 | 8.10e-12 | 63.9 |
| Msa0442960 | AT5G63470.2 | 40.506 | 79 | 47 | 0 | 8 | 86 | 78 | 156 | 8.26e-12 | 64.3 |
| Msa0442960 | AT5G63470.1 | 40.506 | 79 | 47 | 0 | 8 | 86 | 78 | 156 | 8.26e-12 | 64.3 |
| Msa0442960 | AT1G56170.1 | 41.026 | 78 | 46 | 0 | 9 | 86 | 77 | 154 | 1.64e-11 | 62.4 |
| Msa0442960 | AT1G56170.2 | 41.026 | 78 | 46 | 0 | 9 | 86 | 77 | 154 | 1.64e-11 | 62.4 |
Find 95 sgRNAs with CRISPR-Local
Find 345 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTTCATGGCATTAAAT+TGG | 0.132989 | 3_3:+13366938 | None:intergenic |
| CTAGTACATGATTTACTTCT+TGG | 0.159971 | 3_3:-13362307 | Msa0442960:three_prime_UTR |
| TTGCAGCAGGCTCAGGCAAT+GGG | 0.298692 | 3_3:+13362648 | None:intergenic |
| AGGGGAAGAGGAAGGGGTAG+AGG | 0.303468 | 3_3:-13362944 | Msa0442960:CDS |
| TTACAAATGCAATGCATTCA+TGG | 0.332233 | 3_3:+13364159 | None:intergenic |
| GGTATCAAGCTTCTTCTTCA+TGG | 0.333154 | 3_3:+13366927 | None:intergenic |
| TTGCAGCAAACCTTGGTAAT+AGG | 0.333492 | 3_3:-13362547 | Msa0442960:CDS |
| CTTCTTCATGGCATTAAATT+GGG | 0.337521 | 3_3:+13366939 | None:intergenic |
| CCTACGAAGTGTCGATTTGC+CGG | 0.344437 | 3_3:+13367063 | None:intergenic |
| TGGACTTCGAACCTTCTCTT+TGG | 0.350657 | 3_3:+13363524 | None:intergenic |
| GATTTACTTCTTGGTAAAGT+TGG | 0.356333 | 3_3:-13362298 | Msa0442960:three_prime_UTR |
| TAAATGGATATTGTTGTTGT+AGG | 0.378021 | 3_3:-13362344 | Msa0442960:three_prime_UTR |
| ACTCGTACGAACGCATATTC+CGG | 0.387293 | 3_3:-13367082 | Msa0442960:five_prime_UTR |
| ATTAAATTGGGAAATTGAAC+AGG | 0.390671 | 3_3:+13366951 | None:intergenic |
| GTTGCAGCAGGCTCAGGCAA+TGG | 0.392246 | 3_3:+13362647 | None:intergenic |
| TGGCATTCAGATCAATGTTT+CGG | 0.398272 | 3_3:+13362726 | None:intergenic |
| ACAAGTATGGCAATAGATAA+TGG | 0.399112 | 3_3:-13362812 | Msa0442960:CDS |
| GTAGAGTTATTTCATAAGTT+CGG | 0.415756 | 3_3:+13364197 | None:intergenic |
| AGCAACTCACAAACTAAAAC+AGG | 0.421254 | 3_3:+13364340 | None:intergenic |
| AGAGGAAGAGGCCGCGGTCG+AGG | 0.425950 | 3_3:-13362926 | Msa0442960:CDS |
| GAGACATGATTTCCACCTTA+AGG | 0.425952 | 3_3:+13362476 | None:intergenic |
| AGATTCAACCTGCTGATGTA+AGG | 0.427032 | 3_3:+13362880 | None:intergenic |
| AGACGTCCGCAATACAAGTA+TGG | 0.427604 | 3_3:-13362825 | Msa0442960:CDS |
| TTTAAGATATTGTCTGTCAA+TGG | 0.428927 | 3_3:-13362247 | Msa0442960:three_prime_UTR |
| AGAGGAAGGGGTAGAGGAAG+AGG | 0.428938 | 3_3:-13362938 | Msa0442960:CDS |
| CTAGTATCTACACAGGTCAT+TGG | 0.436437 | 3_3:+13362411 | None:intergenic |
| GTTTGATTACAGCTTGAGTT+GGG | 0.437970 | 3_3:-13362986 | Msa0442960:intron |
| TCAGGCAATGGGGCCTGAGC+AGG | 0.439755 | 3_3:+13362659 | None:intergenic |
| CCACACTGGCGGTACTGGTA+GGG | 0.444180 | 3_3:-13362963 | Msa0442960:CDS |
| GAAGAGTAGCTAACACCTTA+AGG | 0.446150 | 3_3:-13362491 | Msa0442960:exon |
| TTGGGCCACACTGGCGGTAC+TGG | 0.449291 | 3_3:-13362968 | Msa0442960:CDS |
| GGCGGTACTGGTAGGGGAAG+AGG | 0.449384 | 3_3:-13362956 | Msa0442960:CDS |
| ATGCAACATGAAGAAATTCC+AGG | 0.456390 | 3_3:-13362617 | Msa0442960:CDS |
| TGTTTGATTACAGCTTGAGT+TGG | 0.458715 | 3_3:-13362987 | Msa0442960:intron |
| AAAACAACAATGAAACCAAC+TGG | 0.460380 | 3_3:+13362271 | None:intergenic |
| ACTGGTAGGGGAAGAGGAAG+GGG | 0.463619 | 3_3:-13362950 | Msa0442960:CDS |
| AAAACTTACAGCAGGAAAAC+GGG | 0.465658 | 3_3:+13366906 | None:intergenic |
| TTTCTGTCCCACACTACCTT+CGG | 0.475603 | 3_3:-13367040 | Msa0442960:five_prime_UTR |
| TGCATATCTGTTGTTGCAGC+AGG | 0.476096 | 3_3:+13362635 | None:intergenic |
| AGGGGTAGAGGAAGAGGCCG+CGG | 0.479703 | 3_3:-13362932 | Msa0442960:CDS |
| AAGAGAAACCTTACATCAGC+AGG | 0.497349 | 3_3:-13362888 | Msa0442960:CDS |
| GCCACACTGGCGGTACTGGT+AGG | 0.501008 | 3_3:-13362964 | Msa0442960:CDS |
| GGACATGGCCATTCTGAGGC+TGG | 0.501930 | 3_3:-13363566 | Msa0442960:CDS |
| AAAGCAAAGGAAGGGGTGAA+TGG | 0.502976 | 3_3:+13367004 | None:intergenic |
| CACACTGGCGGTACTGGTAG+GGG | 0.503334 | 3_3:-13362962 | Msa0442960:CDS |
| TCTGTTGTTGCAGCAGGCTC+AGG | 0.507661 | 3_3:+13362641 | None:intergenic |
| GAGGAAGAGGCCGCGGTCGA+GGG | 0.509630 | 3_3:-13362925 | Msa0442960:CDS |
| CCATGTCCGTGGCTATAGTC+AGG | 0.512389 | 3_3:+13363581 | None:intergenic |
| CTGCAGCTTGCAGCAAACCT+TGG | 0.517052 | 3_3:-13362554 | Msa0442960:CDS |
| TGAAGAAGATTATGATGAGG+AGG | 0.517959 | 3_3:-13362513 | Msa0442960:CDS |
| GGAAATTTGAAAGCAAAGGA+AGG | 0.521410 | 3_3:+13366995 | None:intergenic |
| CATCAGCGCCAGCCTCAGAA+TGG | 0.533148 | 3_3:+13363558 | None:intergenic |
| CCATCTTGTCGACATCAGAA+AGG | 0.538115 | 3_3:+13362588 | None:intergenic |
| AAGCACAGATATACCTGCTC+AGG | 0.539470 | 3_3:-13362672 | Msa0442960:CDS |
| GAAGGGAAATTTGAAAGCAA+AGG | 0.546958 | 3_3:+13366991 | None:intergenic |
| TACTGGTAGGGGAAGAGGAA+GGG | 0.550796 | 3_3:-13362951 | Msa0442960:CDS |
| CCGGCAAATCGACACTTCGT+AGG | 0.550850 | 3_3:-13367063 | Msa0442960:five_prime_UTR |
| ATGCAAGCAGACGAGGATGT+TGG | 0.554702 | 3_3:-13364382 | Msa0442960:CDS |
| CCTTTCTGATGTCGACAAGA+TGG | 0.555115 | 3_3:-13362588 | Msa0442960:CDS |
| GGTAAAGTTGGATTACCAGT+TGG | 0.556258 | 3_3:-13362286 | Msa0442960:three_prime_UTR |
| CAGCTTGAGTTGGGCCACAC+TGG | 0.562286 | 3_3:-13362977 | Msa0442960:CDS |
| CATCTTGTCGACATCAGAAA+GGG | 0.562835 | 3_3:+13362589 | None:intergenic |
| AGGAAGAGGCCGCGGTCGAG+GGG | 0.567783 | 3_3:-13362924 | Msa0442960:CDS |
| AGGGATCATTCATTTAGCAT+CGG | 0.572515 | 3_3:+13362454 | None:intergenic |
| CTATTGCCATACTTGTATTG+CGG | 0.574433 | 3_3:+13362819 | None:intergenic |
| AGATAATGGTTCAGAACCAA+AGG | 0.574615 | 3_3:-13362798 | Msa0442960:CDS |
| GAAATTTGAAAGCAAAGGAA+GGG | 0.575104 | 3_3:+13366996 | None:intergenic |
| CCTCATCTAGCCTATTACCA+AGG | 0.583547 | 3_3:+13362537 | None:intergenic |
| TGTAAGATCCGAAGGTAGTG+TGG | 0.584836 | 3_3:+13367032 | None:intergenic |
| TTTGAGAGACATTGTCAGCA+GGG | 0.585914 | 3_3:-13363606 | Msa0442960:CDS |
| GGATGAAGAAGATTATGATG+AGG | 0.588674 | 3_3:-13362516 | Msa0442960:CDS |
| ACATCAGAAAGGGACCAACC+TGG | 0.595072 | 3_3:+13362599 | None:intergenic |
| ACACAGGTCATTGGTATACC+AGG | 0.598138 | 3_3:+13362420 | None:intergenic |
| GTACTGGTAGGGGAAGAGGA+AGG | 0.602926 | 3_3:-13362952 | Msa0442960:CDS |
| AGAACCAAAGGAGTTATCAA+AGG | 0.605334 | 3_3:-13362786 | Msa0442960:CDS |
| ATCGTGCTGTTCCAAAGAGA+AGG | 0.608205 | 3_3:-13363535 | Msa0442960:CDS |
| TGCAGCAGGCTCAGGCAATG+GGG | 0.617358 | 3_3:+13362649 | None:intergenic |
| CCACGGACATGGCCATTCTG+AGG | 0.617948 | 3_3:-13363570 | Msa0442960:CDS |
| CCTGACTATAGCCACGGACA+TGG | 0.621947 | 3_3:-13363581 | Msa0442960:CDS |
| AAATTTGAAAGCAAAGGAAG+GGG | 0.622601 | 3_3:+13366997 | None:intergenic |
| GAAGATAATGCAAGCAGACG+AGG | 0.624666 | 3_3:-13364389 | Msa0442960:CDS |
| CCTTGGTAATAGGCTAGATG+AGG | 0.626019 | 3_3:-13362537 | Msa0442960:CDS |
| CTTGAGTTGGGCCACACTGG+CGG | 0.626402 | 3_3:-13362974 | Msa0442960:CDS |
| GTTTGCTGAATAGAAGTGCA+AGG | 0.627861 | 3_3:+13362854 | None:intergenic |
| GGATGTTGGAAAGATAGCAC+TGG | 0.629786 | 3_3:-13364368 | Msa0442960:CDS |
| GTAAGATCCGAAGGTAGTGT+GGG | 0.633991 | 3_3:+13367033 | None:intergenic |
| GAGTAGCTAACACCTTAAGG+TGG | 0.636532 | 3_3:-13362488 | Msa0442960:exon |
| AGGGTTCCTGACTATAGCCA+CGG | 0.641831 | 3_3:-13363587 | Msa0442960:CDS |
| TGGTGTGATGTAAGATCCGA+AGG | 0.643129 | 3_3:+13367024 | None:intergenic |
| AACATGAAGAAATTCCAGGT+TGG | 0.648140 | 3_3:-13362613 | Msa0442960:CDS |
| CCTCAGAATGGCCATGTCCG+TGG | 0.649675 | 3_3:+13363570 | None:intergenic |
| CAGTTCGAGCCCCTCGACCG+CGG | 0.651823 | 3_3:+13362915 | None:intergenic |
| CCCTACCAGTACCGCCAGTG+TGG | 0.652289 | 3_3:+13362963 | None:intergenic |
| AAATTTGCTAGTATCTACAC+AGG | 0.676117 | 3_3:+13362404 | None:intergenic |
| TATGAAATAACTCTACAGAG+AGG | 0.722734 | 3_3:-13364190 | Msa0442960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTGAAGAA+AGG | + | chr3_3:13362237-13362256 | None:intergenic | 10.0% |
| !!! | ATAGTTTTTTTTTTTTTTGA+AGG | + | chr3_3:13362274-13362293 | None:intergenic | 10.0% |
| !!! | GATTATAATTTGAAATATAT+AGG | - | chr3_3:13363492-13363511 | Msa0442960:intron | 10.0% |
| !!! | TTATTTCTTAGTTAAATTTT+GGG | - | chr3_3:13365100-13365119 | Msa0442960:intron | 10.0% |
| !!! | AATTATAAAATAAGTGATTT+TGG | - | chr3_3:13365551-13365570 | Msa0442960:intron | 10.0% |
| !!! | TAATTGAGCTTTTTTTAATT+TGG | - | chr3_3:13362622-13362641 | Msa0442960:CDS | 15.0% |
| !!! | AATTGAGCTTTTTTTAATTT+GGG | - | chr3_3:13362623-13362642 | Msa0442960:CDS | 15.0% |
| !!! | TGATGATAAATTGATAATTT+AGG | - | chr3_3:13362648-13362667 | Msa0442960:CDS | 15.0% |
| !!! | GATGATAAATTGATAATTTA+GGG | - | chr3_3:13362649-13362668 | Msa0442960:CDS | 15.0% |
| !!! | TTGAACTTTGTTTATTTATT+TGG | - | chr3_3:13362889-13362908 | Msa0442960:CDS | 15.0% |
| !!! | TGAACTTTGTTTATTTATTT+GGG | - | chr3_3:13362890-13362909 | Msa0442960:CDS | 15.0% |
| !!! | GTATTTTCTCAAATTATTAT+CGG | + | chr3_3:13363287-13363306 | None:intergenic | 15.0% |
| !! | CTTAAATAGATTATTTGAAA+AGG | + | chr3_3:13364940-13364959 | None:intergenic | 15.0% |
| !!! | GTTATTTCTTAGTTAAATTT+TGG | - | chr3_3:13365099-13365118 | Msa0442960:intron | 15.0% |
| !!! | TATTTTCTATATTTTTCTTG+AGG | - | chr3_3:13365290-13365309 | Msa0442960:intron | 15.0% |
| !! | TTTAGATTTCACAAACTAAA+GGG | + | chr3_3:13363982-13364001 | None:intergenic | 20.0% |
| !! | ATTTAGATTTCACAAACTAA+AGG | + | chr3_3:13363983-13364002 | None:intergenic | 20.0% |
| !!! | ATTTTTTATCACAAGGTTAT+AGG | - | chr3_3:13364155-13364174 | Msa0442960:intron | 20.0% |
| !! | AATCATAAATGTATTCCAAT+AGG | + | chr3_3:13364509-13364528 | None:intergenic | 20.0% |
| !! | GATTTAATGATTAAGAATTG+AGG | - | chr3_3:13365375-13365394 | Msa0442960:intron | 20.0% |
| !!! | TTTTATAATTCGTAACAAAC+AGG | + | chr3_3:13365541-13365560 | None:intergenic | 20.0% |
| !! | AATAAAAAGATAAAAGCTAC+TGG | + | chr3_3:13365911-13365930 | None:intergenic | 20.0% |
| !!! | ATTGTTTTCATACAAGTTAT+AGG | - | chr3_3:13366148-13366167 | Msa0442960:intron | 20.0% |
| !! | ACTTATTTGAATTTATCTAC+TGG | + | chr3_3:13366255-13366274 | None:intergenic | 20.0% |
| !! | AAAAATTGTAAGAAACTAGA+AGG | - | chr3_3:13366347-13366366 | Msa0442960:intron | 20.0% |
| !!! | ATTTAGTTTCATCACTTTTT+AGG | - | chr3_3:13367042-13367061 | Msa0442960:five_prime_UTR | 20.0% |
| !!! | TTTAGTTTCATCACTTTTTA+GGG | - | chr3_3:13367043-13367062 | Msa0442960:five_prime_UTR | 20.0% |
| ! | ATTAAATTGGGAAATTGAAC+AGG | + | chr3_3:13362464-13362483 | None:intergenic | 25.0% |
| !! | AATTGATAATTTAGGGTTTC+TGG | - | chr3_3:13362656-13362675 | Msa0442960:CDS | 25.0% |
| !! | ATTGATAATTTAGGGTTTCT+GGG | - | chr3_3:13362657-13362676 | Msa0442960:CDS | 25.0% |
| ! | GTATCTACGCAAATTATTAT+CGG | + | chr3_3:13362814-13362833 | None:intergenic | 25.0% |
| !! | TATTTGGGTTTGATGATAAT+AGG | - | chr3_3:13362905-13362924 | Msa0442960:CDS | 25.0% |
| !! | ATTTGGGTTTGATGATAATA+GGG | - | chr3_3:13362906-13362925 | Msa0442960:CDS | 25.0% |
| !! | GGAATTTTTGTATGATTCAT+AGG | - | chr3_3:13362981-13363000 | Msa0442960:intron | 25.0% |
| !! | TTAGGTTTGATGATAATTGA+GGG | - | chr3_3:13363155-13363174 | Msa0442960:intron | 25.0% |
| ! | TGGAATTTAGTAAAGTTCAT+AGG | - | chr3_3:13363451-13363470 | Msa0442960:intron | 25.0% |
| ! | ATTGCCCTAATAGAAAAATT+AGG | - | chr3_3:13363608-13363627 | Msa0442960:CDS | 25.0% |
| !! | CTGTCCTAATTTTTCTATTA+GGG | + | chr3_3:13363615-13363634 | None:intergenic | 25.0% |
| ! | ACTATAACACTATATCATAG+AGG | + | chr3_3:13363670-13363689 | None:intergenic | 25.0% |
| !! | AATACTTGTTTAAGCCTTTT+TGG | - | chr3_3:13363712-13363731 | Msa0442960:intron | 25.0% |
| ! | TGTTAGTATCAAAATAAGTG+AGG | - | chr3_3:13363764-13363783 | Msa0442960:intron | 25.0% |
| ! | ATTAGGATAATTCAAATGGA+AGG | + | chr3_3:13363860-13363879 | None:intergenic | 25.0% |
| ! | AGGATCATCTAATTTACAAA+CGG | + | chr3_3:13363912-13363931 | None:intergenic | 25.0% |
| ! | TTAGATTTCACAAACTAAAG+GGG | + | chr3_3:13363981-13364000 | None:intergenic | 25.0% |
| ! | TGTGATAAAAAATAACGTTC+TGG | + | chr3_3:13364148-13364167 | None:intergenic | 25.0% |
| !!! | GAACGTTATTTTTTATCACA+AGG | - | chr3_3:13364148-13364167 | Msa0442960:intron | 25.0% |
| ! | AAATAATGTAATCAGAGAGA+TGG | - | chr3_3:13364272-13364291 | Msa0442960:intron | 25.0% |
| ! | GTATGTGTAACTTATACAAT+TGG | - | chr3_3:13364432-13364451 | Msa0442960:intron | 25.0% |
| ! | TAAATGTATTCCAATAGGTT+TGG | + | chr3_3:13364504-13364523 | None:intergenic | 25.0% |
| ! | AATACATTTATGATTACACC+CGG | - | chr3_3:13364514-13364533 | Msa0442960:intron | 25.0% |
| ! | AAAAACTATTCCACAAAACA+TGG | + | chr3_3:13364642-13364661 | None:intergenic | 25.0% |
| !!! | TCATGAAAACATTAATTTGC+AGG | - | chr3_3:13364990-13365009 | Msa0442960:intron | 25.0% |
| !! | GTAGAGTTATTTCATAAGTT+CGG | + | chr3_3:13365218-13365237 | None:intergenic | 25.0% |
| !! | ACCTTAAATGTAAAGCATTT+GGG | - | chr3_3:13365466-13365485 | Msa0442960:intron | 25.0% |
| !! | AATTTTCCCAAAACTCTATT+GGG | + | chr3_3:13365508-13365527 | None:intergenic | 25.0% |
| !! | AAATTTTCCCAAAACTCTAT+TGG | + | chr3_3:13365509-13365528 | None:intergenic | 25.0% |
| !! | TATCTAAAATCTGCTTTGAA+TGG | + | chr3_3:13365695-13365714 | None:intergenic | 25.0% |
| !! | TGTATAGGTTTTCGATAAAA+GGG | + | chr3_3:13366058-13366077 | None:intergenic | 25.0% |
| !! | TTGTATAGGTTTTCGATAAA+AGG | + | chr3_3:13366059-13366078 | None:intergenic | 25.0% |
| !! | TTTTATCGAAAACCTATACA+AGG | - | chr3_3:13366058-13366077 | Msa0442960:intron | 25.0% |
| ! | TTATTTCCATATGCTCATTA+GGG | + | chr3_3:13366190-13366209 | None:intergenic | 25.0% |
| ! | TAAAAGCAGTGTATTTCATA+AGG | - | chr3_3:13366212-13366231 | Msa0442960:intron | 25.0% |
| ! | ATTCCCAATTATAAGGTTAT+AGG | + | chr3_3:13366308-13366327 | None:intergenic | 25.0% |
| ! | ACATTTGATTCCCAATTATA+AGG | + | chr3_3:13366315-13366334 | None:intergenic | 25.0% |
| !!! | ATCACTTTTTAGGGTTTAAA+TGG | - | chr3_3:13367052-13367071 | Msa0442960:five_prime_UTR | 25.0% |
| !! | TAAATGGATATTGTTGTTGT+AGG | - | chr3_3:13367068-13367087 | Msa0442960:five_prime_UTR | 25.0% |
| !! | TTTAAGATATTGTCTGTCAA+TGG | - | chr3_3:13367165-13367184 | Msa0442960:five_prime_UTR | 25.0% |
| AAATTTGAAAGCAAAGGAAG+GGG | + | chr3_3:13362418-13362437 | None:intergenic | 30.0% | |
| GAAATTTGAAAGCAAAGGAA+GGG | + | chr3_3:13362419-13362438 | None:intergenic | 30.0% | |
| ! | AAGAACGTGACAATTTTGAA+GGG | + | chr3_3:13362441-13362460 | None:intergenic | 30.0% |
| CTTCTTCATGGCATTAAATT+GGG | + | chr3_3:13362476-13362495 | None:intergenic | 30.0% | |
| TCTTCTTCATGGCATTAAAT+TGG | + | chr3_3:13362477-13362496 | None:intergenic | 30.0% | |
| AAAAACTTACAGCAGGAAAA+CGG | + | chr3_3:13362510-13362529 | None:intergenic | 30.0% | |
| ! | TTGATGATAATAGGGTTTCT+AGG | - | chr3_3:13362914-13362933 | Msa0442960:CDS | 30.0% |
| TATAATGACATGTGTCAATG+TGG | - | chr3_3:13363088-13363107 | Msa0442960:intron | 30.0% | |
| ! | CTTAGGTTTGATGATAATTG+AGG | - | chr3_3:13363154-13363173 | Msa0442960:intron | 30.0% |
| TCAATTGAGCTTTGCTTATT+TGG | - | chr3_3:13363358-13363377 | Msa0442960:intron | 30.0% | |
| CAATTGAGCTTTGCTTATTT+GGG | - | chr3_3:13363359-13363378 | Msa0442960:intron | 30.0% | |
| ! | TTTGGGTTTGATGATAATTG+AGG | - | chr3_3:13363376-13363395 | Msa0442960:intron | 30.0% |
| ! | TTGGGTTTGATGATAATTGA+GGG | - | chr3_3:13363377-13363396 | Msa0442960:intron | 30.0% |
| ! | GCTGTCCTAATTTTTCTATT+AGG | + | chr3_3:13363616-13363635 | None:intergenic | 30.0% |
| ! | AAACAAGTATTGTCAAGTAG+CGG | + | chr3_3:13363703-13363722 | None:intergenic | 30.0% |
| ! | TTACGATGGGTATGTTTTAT+TGG | - | chr3_3:13363816-13363835 | Msa0442960:intron | 30.0% |
| !! | TACGATGGGTATGTTTTATT+GGG | - | chr3_3:13363817-13363836 | Msa0442960:intron | 30.0% |
| GAGCATTAGGATAATTCAAA+TGG | + | chr3_3:13363864-13363883 | None:intergenic | 30.0% | |
| TTTGAATTATCCTAATGCTC+TGG | - | chr3_3:13363864-13363883 | Msa0442960:intron | 30.0% | |
| ! | ATTAGATGATCCTTTTGTGA+TGG | - | chr3_3:13363919-13363938 | Msa0442960:intron | 30.0% |
| TTCAAGCAATTGGGATAATA+TGG | + | chr3_3:13364208-13364227 | None:intergenic | 30.0% | |
| CTTCTATAACCATCTTCATT+CGG | + | chr3_3:13364308-13364327 | None:intergenic | 30.0% | |
| TTTCATACATGGATAACTGT+AGG | + | chr3_3:13364469-13364488 | None:intergenic | 30.0% | |
| ! | CAAAGCAAACTTTTCATACA+TGG | + | chr3_3:13364480-13364499 | None:intergenic | 30.0% |
| GATTTAATGCTGTAGCAAAA+TGG | - | chr3_3:13364612-13364631 | Msa0442960:intron | 30.0% | |
| !! | AAAACATTAATTTGCAGGCT+CGG | - | chr3_3:13364995-13365014 | Msa0442960:intron | 30.0% |
| CTGTAAAAAAATCAAGACTG+AGG | + | chr3_3:13365158-13365177 | None:intergenic | 30.0% | |
| !!! | TTTTTTTACAGCAAAAGCTC+TGG | - | chr3_3:13365167-13365186 | Msa0442960:intron | 30.0% |
| TATGAAATAACTCTACAGAG+AGG | - | chr3_3:13365222-13365241 | Msa0442960:intron | 30.0% | |
| TTACAAATGCAATGCATTCA+TGG | + | chr3_3:13365256-13365275 | None:intergenic | 30.0% | |
| ! | CACCTTAAATGTAAAGCATT+TGG | - | chr3_3:13365465-13365484 | Msa0442960:intron | 30.0% |
| ACCCAAATGCTTTACATTTA+AGG | + | chr3_3:13365470-13365489 | None:intergenic | 30.0% | |
| ! | TATATCTCCCAATAGAGTTT+TGG | - | chr3_3:13365498-13365517 | Msa0442960:intron | 30.0% |
| ! | ATATCTCCCAATAGAGTTTT+GGG | - | chr3_3:13365499-13365518 | Msa0442960:intron | 30.0% |
| !!! | GTTTTGGGAAAATTTACTGT+CGG | - | chr3_3:13365514-13365533 | Msa0442960:intron | 30.0% |
| !! | TTTTGGGAAAATTTACTGTC+GGG | - | chr3_3:13365515-13365534 | Msa0442960:intron | 30.0% |
| CTTATTTCCATATGCTCATT+AGG | + | chr3_3:13366191-13366210 | None:intergenic | 30.0% | |
| ATAGGTGCTTATGAATAAAG+AGG | + | chr3_3:13366290-13366309 | None:intergenic | 30.0% | |
| AGCACCTATAACCTTATAAT+TGG | - | chr3_3:13366301-13366320 | Msa0442960:intron | 30.0% | |
| GCACCTATAACCTTATAATT+GGG | - | chr3_3:13366302-13366321 | Msa0442960:intron | 30.0% | |
| TGGGAATCAAATGTTTATCT+CGG | - | chr3_3:13366321-13366340 | Msa0442960:intron | 30.0% | |
| ACAAGTATGGCAATAGATAA+TGG | - | chr3_3:13366600-13366619 | Msa0442960:intron | 30.0% | |
| !! | TTTTCCTTTGATAACTCCTT+TGG | + | chr3_3:13366633-13366652 | None:intergenic | 30.0% |
| ATACCAGGCAAAGAAAAAAA+GGG | + | chr3_3:13366980-13366999 | None:intergenic | 30.0% | |
| TATACCAGGCAAAGAAAAAA+AGG | + | chr3_3:13366981-13367000 | None:intergenic | 30.0% | |
| !! | AAATTTGCTAGTATCTACAC+AGG | + | chr3_3:13367011-13367030 | None:intergenic | 30.0% |
| CTAGTACATGATTTACTTCT+TGG | - | chr3_3:13367105-13367124 | Msa0442960:five_prime_UTR | 30.0% | |
| GATTTACTTCTTGGTAAAGT+TGG | - | chr3_3:13367114-13367133 | Msa0442960:five_prime_UTR | 30.0% | |
| AAAACAACAATGAAACCAAC+TGG | + | chr3_3:13367144-13367163 | None:intergenic | 30.0% | |
| GGAAATTTGAAAGCAAAGGA+AGG | + | chr3_3:13362420-13362439 | None:intergenic | 35.0% | |
| GAAGGGAAATTTGAAAGCAA+AGG | + | chr3_3:13362424-13362443 | None:intergenic | 35.0% | |
| ! | GAAGAACGTGACAATTTTGA+AGG | + | chr3_3:13362442-13362461 | None:intergenic | 35.0% |
| AAAACTTACAGCAGGAAAAC+GGG | + | chr3_3:13362509-13362528 | None:intergenic | 35.0% | |
| AAGCAGAAAAAACTTACAGC+AGG | + | chr3_3:13362517-13362536 | None:intergenic | 35.0% | |
| ! | ATAATAGGGTTTCTAGGTTG+TGG | - | chr3_3:13362920-13362939 | Msa0442960:CDS | 35.0% |
| ! | TAATAGGGTTTCTAGGTTGT+GGG | - | chr3_3:13362921-13362940 | Msa0442960:CDS | 35.0% |
| CTAAGTAACCAAAGCTCAAT+TGG | + | chr3_3:13363139-13363158 | None:intergenic | 35.0% | |
| ! | CAATTGAGCTTTGGTTACTT+AGG | - | chr3_3:13363137-13363156 | Msa0442960:intron | 35.0% |
| ! | TAATTGAGGGTTACTGATTG+TGG | - | chr3_3:13363168-13363187 | Msa0442960:intron | 35.0% |
| ! | AATTGAGGGTTACTGATTGT+GGG | - | chr3_3:13363169-13363188 | Msa0442960:intron | 35.0% |
| AATTTGGTAAAGTGGCATGA+TGG | - | chr3_3:13363198-13363217 | Msa0442960:intron | 35.0% | |
| ATTTGGTAAAGTGGCATGAT+GGG | - | chr3_3:13363199-13363218 | Msa0442960:intron | 35.0% | |
| TGATGATAATTGAGGGTTTC+TGG | - | chr3_3:13363384-13363403 | Msa0442960:intron | 35.0% | |
| GATGATAATTGAGGGTTTCT+GGG | - | chr3_3:13363385-13363404 | Msa0442960:intron | 35.0% | |
| TAAGTGAGGAATGCATTCAT+TGG | - | chr3_3:13363778-13363797 | Msa0442960:intron | 35.0% | |
| AAGTGAGGAATGCATTCATT+GGG | - | chr3_3:13363779-13363798 | Msa0442960:intron | 35.0% | |
| ATTGGGTTAACATTCCTCTT+TGG | - | chr3_3:13363834-13363853 | Msa0442960:intron | 35.0% | |
| ! | CTTCAAATTTCCAGAGCATT+AGG | + | chr3_3:13363877-13363896 | None:intergenic | 35.0% |
| ! | TGATCCTTTTGTGATGGTTA+TGG | - | chr3_3:13363925-13363944 | Msa0442960:intron | 35.0% |
| CTAACCATAACCATCACAAA+AGG | + | chr3_3:13363932-13363951 | None:intergenic | 35.0% | |
| GGTTATGGTTAGAGAGATAT+AGG | - | chr3_3:13363940-13363959 | Msa0442960:intron | 35.0% | |
| GATAATATGGAAAACGTGCA+AGG | + | chr3_3:13364195-13364214 | None:intergenic | 35.0% | |
| AAGCTTCACTTCAAGCAATT+GGG | + | chr3_3:13364217-13364236 | None:intergenic | 35.0% | |
| ATGTAATCAGAGAGATGGAT+CGG | - | chr3_3:13364277-13364296 | Msa0442960:intron | 35.0% | |
| CTGAAGTCTTTCATAAGTGT+AGG | - | chr3_3:13364344-13364363 | Msa0442960:intron | 35.0% | |
| ATATATATGACAGCAGCAAC+TGG | + | chr3_3:13364386-13364405 | None:intergenic | 35.0% | |
| TTTGCTTTGACCAAACCTAT+TGG | - | chr3_3:13364491-13364510 | Msa0442960:intron | 35.0% | |
| TTGCAAAGTGGAAAGAATGA+AGG | + | chr3_3:13364576-13364595 | None:intergenic | 35.0% | |
| ! | CATAGAACACTTTTGCAAAG+TGG | + | chr3_3:13364588-13364607 | None:intergenic | 35.0% |
| ! | AAATGGATGACCATGTTTTG+TGG | - | chr3_3:13364629-13364648 | Msa0442960:intron | 35.0% |
| TCTATAGCACTATAGTGTAG+CGG | - | chr3_3:13364767-13364786 | Msa0442960:intron | 35.0% | |
| CAACACTTTATACTAGATCG+CGG | + | chr3_3:13364816-13364835 | None:intergenic | 35.0% | |
| ! | TCGTGGATTGTAGGAAATAA+CGG | + | chr3_3:13364876-13364895 | None:intergenic | 35.0% |
| AGCAACTCACAAACTAAAAC+AGG | + | chr3_3:13365075-13365094 | None:intergenic | 35.0% | |
| TGCATTGCATTTGTAAGTTG+TGG | - | chr3_3:13365260-13365279 | Msa0442960:intron | 35.0% | |
| ! | TTTTTCTTGAGGAAACCTTC+AGG | - | chr3_3:13365301-13365320 | Msa0442960:intron | 35.0% |
| AAGTAAAATCGGTCTATGCA+TGG | + | chr3_3:13365343-13365362 | None:intergenic | 35.0% | |
| AACACCAGCACAAGTAAAAT+CGG | + | chr3_3:13365354-13365373 | None:intergenic | 35.0% | |
| AATTTCCGATTCTCATCTCT+CGG | - | chr3_3:13365405-13365424 | Msa0442960:intron | 35.0% | |
| TAAGGTGATCAGTTCATACT+TGG | + | chr3_3:13365452-13365471 | None:intergenic | 35.0% | |
| TTCCTGGCAAACATTCTTAA+CGG | + | chr3_3:13365973-13365992 | None:intergenic | 35.0% | |
| !! | ATAAGCACTTAGCCTTGTAT+AGG | + | chr3_3:13366073-13366092 | None:intergenic | 35.0% |
| TGTTTGATTACAGCTTGAGT+TGG | - | chr3_3:13366425-13366444 | Msa0442960:intron | 35.0% | |
| GTTTGATTACAGCTTGAGTT+GGG | - | chr3_3:13366426-13366445 | Msa0442960:intron | 35.0% | |
| CTATTGCCATACTTGTATTG+CGG | + | chr3_3:13366596-13366615 | None:intergenic | 35.0% | |
| ! | AGATAATGGTTCAGAACCAA+AGG | - | chr3_3:13366614-13366633 | Msa0442960:intron | 35.0% |
| AGAACCAAAGGAGTTATCAA+AGG | - | chr3_3:13366626-13366645 | Msa0442960:intron | 35.0% | |
| TGGCATTCAGATCAATGTTT+CGG | + | chr3_3:13366689-13366708 | None:intergenic | 35.0% | |
| ATGCAACATGAAGAAATTCC+AGG | - | chr3_3:13366795-13366814 | Msa0442960:intron | 35.0% | |
| AACATGAAGAAATTCCAGGT+TGG | - | chr3_3:13366799-13366818 | Msa0442960:intron | 35.0% | |
| GGATGAAGAAGATTATGATG+AGG | - | chr3_3:13366896-13366915 | Msa0442960:intron | 35.0% | |
| TGAAGAAGATTATGATGAGG+AGG | - | chr3_3:13366899-13366918 | Msa0442960:intron | 35.0% | |
| AGGGATCATTCATTTAGCAT+CGG | + | chr3_3:13366961-13366980 | None:intergenic | 35.0% | |
| GGTATCAAGCTTCTTCTTCA+TGG | + | chr3_3:13362488-13362507 | None:intergenic | 40.0% | |
| ACCCAGATGCAAAAACACAA+CGG | + | chr3_3:13362572-13362591 | None:intergenic | 40.0% | |
| ! | AATTTAGGGTTTCTGGGTTG+CGG | - | chr3_3:13362663-13362682 | Msa0442960:CDS | 40.0% |
| AATTGGGTGGAATGGTATGA+TGG | - | chr3_3:13362693-13362712 | Msa0442960:CDS | 40.0% | |
| ATTGGGTGGAATGGTATGAT+GGG | - | chr3_3:13362694-13362713 | Msa0442960:CDS | 40.0% | |
| ! | AATAGGGTTTCTAGGTTGTG+GGG | - | chr3_3:13362922-13362941 | Msa0442960:CDS | 40.0% |
| ! | ATTGAGGGTTACTGATTGTG+GGG | - | chr3_3:13363170-13363189 | Msa0442960:intron | 40.0% |
| ACTCACATAGAGACCAATAC+CGG | - | chr3_3:13363239-13363258 | Msa0442960:intron | 40.0% | |
| AAAGCTCAATTGACATGTGC+GGG | + | chr3_3:13363351-13363370 | None:intergenic | 40.0% | |
| CAAAGCTCAATTGACATGTG+CGG | + | chr3_3:13363352-13363371 | None:intergenic | 40.0% | |
| ! | ATTGAGGGTTTCTGGGTTAT+CGG | - | chr3_3:13363392-13363411 | Msa0442960:intron | 40.0% |
| AATTGGGTAGAGTGGTATGA+CGG | - | chr3_3:13363421-13363440 | Msa0442960:intron | 40.0% | |
| !! | TAGTGGGTTATTGATAGCAC+TGG | + | chr3_3:13363547-13363566 | None:intergenic | 40.0% |
| TGCTAGCAAAACTGGAATAG+AGG | - | chr3_3:13363580-13363599 | Msa0442960:CDS | 40.0% | |
| GAAAAATTAGGACAGCGTCA+CGG | - | chr3_3:13363620-13363639 | Msa0442960:CDS | 40.0% | |
| !!! | GTTTAAGCCTTTTTGGTGCT+TGG | - | chr3_3:13363719-13363738 | Msa0442960:intron | 40.0% |
| AAACCAACCAAGCACCAAAA+AGG | + | chr3_3:13363729-13363748 | None:intergenic | 40.0% | |
| !!! | TTTTTGGTGCTTGGTTGGTT+TGG | - | chr3_3:13363728-13363747 | Msa0442960:intron | 40.0% |
| !!! | TTTTGGTGCTTGGTTGGTTT+GGG | - | chr3_3:13363729-13363748 | Msa0442960:intron | 40.0% |
| AGTGAGGAATGCATTCATTG+GGG | - | chr3_3:13363780-13363799 | Msa0442960:intron | 40.0% | |
| ATTCAAATGGAAGGCCAAAG+AGG | + | chr3_3:13363851-13363870 | None:intergenic | 40.0% | |
| GCAGTTTGCATCAGAATTTG+AGG | + | chr3_3:13364039-13364058 | None:intergenic | 40.0% | |
| CAAGCTTCACTTCAAGCAAT+TGG | + | chr3_3:13364218-13364237 | None:intergenic | 40.0% | |
| TCGGTTAAACCGAATGAAGA+TGG | - | chr3_3:13364296-13364315 | Msa0442960:intron | 40.0% | |
| CATACATGGATAACTGTAGG+AGG | + | chr3_3:13364466-13364485 | None:intergenic | 40.0% | |
| TTATGATTACACCCGGAGTT+TGG | - | chr3_3:13364521-13364540 | Msa0442960:intron | 40.0% | |
| TATGATTACACCCGGAGTTT+GGG | - | chr3_3:13364522-13364541 | Msa0442960:intron | 40.0% | |
| TTAACCAAAACCCAAACTCC+GGG | + | chr3_3:13364535-13364554 | None:intergenic | 40.0% | |
| GTTAACCAAAACCCAAACTC+CGG | + | chr3_3:13364536-13364555 | None:intergenic | 40.0% | |
| CAGAACAGTGTGATTCAACA+AGG | + | chr3_3:13364700-13364719 | None:intergenic | 40.0% | |
| ! | TGTTGTCAATCGTGGATTGT+AGG | + | chr3_3:13364885-13364904 | None:intergenic | 40.0% |
| CACAAACAATTCACACCTGA+AGG | + | chr3_3:13365319-13365338 | None:intergenic | 40.0% | |
| !! | TAGACCGATTTTACTTGTGC+TGG | - | chr3_3:13365347-13365366 | Msa0442960:intron | 40.0% |
| TTTGACCGAGAGATGAGAAT+CGG | + | chr3_3:13365413-13365432 | None:intergenic | 40.0% | |
| TGATCAGTTCATACTTGGCA+TGG | + | chr3_3:13365447-13365466 | None:intergenic | 40.0% | |
| CTGAAATTTGTGTTCACCAC+TGG | + | chr3_3:13365750-13365769 | None:intergenic | 40.0% | |
| CAGTGGTGAACACAAATTTC+AGG | - | chr3_3:13365748-13365767 | Msa0442960:intron | 40.0% | |
| !! | TTTTGAGAGACATTGTCAGC+AGG | - | chr3_3:13365805-13365824 | Msa0442960:intron | 40.0% |
| TTTGAGAGACATTGTCAGCA+GGG | - | chr3_3:13365806-13365825 | Msa0442960:intron | 40.0% | |
| AACCGTTAAGAATGTTTGCC+AGG | - | chr3_3:13365968-13365987 | Msa0442960:intron | 40.0% | |
| AAGCTACCCTAATGAGCATA+TGG | - | chr3_3:13366181-13366200 | Msa0442960:intron | 40.0% | |
| ! | TTTTCAGTCATGATCGACGA+TGG | - | chr3_3:13366395-13366414 | Msa0442960:intron | 40.0% |
| AAGAGAAACCTTACATCAGC+AGG | - | chr3_3:13366524-13366543 | Msa0442960:intron | 40.0% | |
| AGATTCAACCTGCTGATGTA+AGG | + | chr3_3:13366535-13366554 | None:intergenic | 40.0% | |
| ! | GTTTGCTGAATAGAAGTGCA+AGG | + | chr3_3:13366561-13366580 | None:intergenic | 40.0% |
| ! | GTCTTCGTTTTCATGCAAGT+TGG | + | chr3_3:13366709-13366728 | None:intergenic | 40.0% |
| CATCTTGTCGACATCAGAAA+GGG | + | chr3_3:13366826-13366845 | None:intergenic | 40.0% | |
| ! | TTGCAGCAAACCTTGGTAAT+AGG | - | chr3_3:13366865-13366884 | Msa0442960:intron | 40.0% |
| GAAGAGTAGCTAACACCTTA+AGG | - | chr3_3:13366921-13366940 | Msa0442960:CDS | 40.0% | |
| GAGACATGATTTCCACCTTA+AGG | + | chr3_3:13366939-13366958 | None:intergenic | 40.0% | |
| !!! | GATCCCTTTTTTTCTTTGCC+TGG | - | chr3_3:13366974-13366993 | Msa0442960:five_prime_UTR | 40.0% |
| CTAGTATCTACACAGGTCAT+TGG | + | chr3_3:13367004-13367023 | None:intergenic | 40.0% | |
| GGTAAAGTTGGATTACCAGT+TGG | - | chr3_3:13367126-13367145 | Msa0442960:five_prime_UTR | 40.0% | |
| ACTCGTACGAACGCATATTC+CGG | - | chr3_3:13362330-13362349 | Msa0442960:three_prime_UTR | 45.0% | |
| TTTCTGTCCCACACTACCTT+CGG | - | chr3_3:13362372-13362391 | Msa0442960:three_prime_UTR | 45.0% | |
| GTAAGATCCGAAGGTAGTGT+GGG | + | chr3_3:13362382-13362401 | None:intergenic | 45.0% | |
| TGTAAGATCCGAAGGTAGTG+TGG | + | chr3_3:13362383-13362402 | None:intergenic | 45.0% | |
| TGGTGTGATGTAAGATCCGA+AGG | + | chr3_3:13362391-13362410 | None:intergenic | 45.0% | |
| AAAGCAAAGGAAGGGGTGAA+TGG | + | chr3_3:13362411-13362430 | None:intergenic | 45.0% | |
| !! | TGCCGTTGTGTTTTTGCATC+TGG | - | chr3_3:13362567-13362586 | Msa0442960:CDS | 45.0% |
| !! | GCCGTTGTGTTTTTGCATCT+GGG | - | chr3_3:13362568-13362587 | Msa0442960:CDS | 45.0% |
| ! | ATTTAGGGTTTCTGGGTTGC+GGG | - | chr3_3:13362664-13362683 | Msa0442960:CDS | 45.0% |
| !! | AATGGTATGATGGGTGTGAC+TGG | - | chr3_3:13362703-13362722 | Msa0442960:CDS | 45.0% |
| TACATGTGTCAGTGTCGTGT+TGG | - | chr3_3:13362849-13362868 | Msa0442960:CDS | 45.0% | |
| GTCAGTGTCGTGTTGGATAT+TGG | - | chr3_3:13362856-13362875 | Msa0442960:CDS | 45.0% | |
| ! | ATAGGGTTTCTAGGTTGTGG+GGG | - | chr3_3:13362923-13362942 | Msa0442960:CDS | 45.0% |
| AATTGGGTAGAGTGGCATGA+TGG | - | chr3_3:13362950-13362969 | Msa0442960:CDS | 45.0% | |
| ATTGGGTAGAGTGGCATGAT+GGG | - | chr3_3:13362951-13362970 | Msa0442960:CDS | 45.0% | |
| CGATGTATTAGTGTCGTGAC+CGG | + | chr3_3:13363045-13363064 | None:intergenic | 45.0% | |
| GACATGTGTCAATGTGGTGT+TGG | - | chr3_3:13363094-13363113 | Msa0442960:intron | 45.0% | |
| GACATGTGCCAATTGAGCTT+TGG | - | chr3_3:13363128-13363147 | Msa0442960:intron | 45.0% | |
| ! | TTGAGGGTTACTGATTGTGG+GGG | - | chr3_3:13363171-13363190 | Msa0442960:intron | 45.0% |
| ! | TGATTGTGGGGGTGTGAATT+TGG | - | chr3_3:13363182-13363201 | Msa0442960:intron | 45.0% |
| GGGGTGTGAATTTGGTAAAG+TGG | - | chr3_3:13363190-13363209 | Msa0442960:intron | 45.0% | |
| ! | CAATGTGTGAGTGTTGTGAC+CGG | + | chr3_3:13363261-13363280 | None:intergenic | 45.0% |
| TGCATGTGTCAATGTCGTGT+CGG | - | chr3_3:13363322-13363341 | Msa0442960:intron | 45.0% | |
| ! | TTGAGGGTTTCTGGGTTATC+GGG | - | chr3_3:13363393-13363412 | Msa0442960:intron | 45.0% |
| ! | TGGGTTATCGGGGTGTTAAT+TGG | - | chr3_3:13363404-13363423 | Msa0442960:intron | 45.0% |
| ! | GGGTTATCGGGGTGTTAATT+GGG | - | chr3_3:13363405-13363424 | Msa0442960:intron | 45.0% |
| ATTGGGTAGAGTGGTATGAC+GGG | - | chr3_3:13363422-13363441 | Msa0442960:intron | 45.0% | |
| GCAGATGTAGCGACAATAGT+GGG | + | chr3_3:13363563-13363582 | None:intergenic | 45.0% | |
| AGCAGATGTAGCGACAATAG+TGG | + | chr3_3:13363564-13363583 | None:intergenic | 45.0% | |
| GCTACATCTGCTAGCAAAAC+TGG | - | chr3_3:13363572-13363591 | Msa0442960:CDS | 45.0% | |
| ! | CAGCGTCACGGTTTTTATAG+CGG | - | chr3_3:13363632-13363651 | Msa0442960:CDS | 45.0% |
| !!! | AAGCCTTTTTGGTGCTTGGT+TGG | - | chr3_3:13363723-13363742 | Msa0442960:intron | 45.0% |
| !! | TTTGGTGCTTGGTTGGTTTG+GGG | - | chr3_3:13363730-13363749 | Msa0442960:intron | 45.0% |
| CTGCTGTTGAGCTTTACGAT+GGG | - | chr3_3:13363803-13363822 | Msa0442960:intron | 45.0% | |
| CACTGTTCTGCTTAGCCAAT+AGG | - | chr3_3:13364710-13364729 | Msa0442960:intron | 45.0% | |
| TTCTGCTTAGCCAATAGGAG+TGG | - | chr3_3:13364715-13364734 | Msa0442960:intron | 45.0% | |
| GACAACACTTCCACTCCTAT+TGG | + | chr3_3:13364728-13364747 | None:intergenic | 45.0% | |
| !! | GTGGAAGTGTTGTCAAACAG+TGG | - | chr3_3:13364734-13364753 | Msa0442960:intron | 45.0% |
| ! | GCACTATAGTGTAGCGGAAT+TGG | - | chr3_3:13364773-13364792 | Msa0442960:intron | 45.0% |
| CACGATTGACAACACTCAGT+GGG | - | chr3_3:13364891-13364910 | Msa0442960:intron | 45.0% | |
| ACGATTGACAACACTCAGTG+GGG | - | chr3_3:13364892-13364911 | Msa0442960:intron | 45.0% | |
| GAAGATAATGCAAGCAGACG+AGG | - | chr3_3:13365023-13365042 | Msa0442960:intron | 45.0% | |
| GGATGTTGGAAAGATAGCAC+TGG | - | chr3_3:13365044-13365063 | Msa0442960:intron | 45.0% | |
| TCTCATCTCTCGGTCAAAGA+CGG | - | chr3_3:13365415-13365434 | Msa0442960:intron | 45.0% | |
| TGTGAGCTTAGTCTAACCAG+TGG | - | chr3_3:13365731-13365750 | Msa0442960:intron | 45.0% | |
| ! | ATCGTGCTGTTCCAAAGAGA+AGG | - | chr3_3:13365877-13365896 | Msa0442960:intron | 45.0% |
| TGGACTTCGAACCTTCTCTT+TGG | + | chr3_3:13365891-13365910 | None:intergenic | 45.0% | |
| TTGCAATGACAGCGATGAAG+AGG | - | chr3_3:13366008-13366027 | Msa0442960:intron | 45.0% | |
| AGAGGCTAAGCGGAGTAAAA+TGG | - | chr3_3:13366026-13366045 | Msa0442960:intron | 45.0% | |
| TCATGACTGAAAACTGCAGC+AGG | + | chr3_3:13366388-13366407 | None:intergenic | 45.0% | |
| AGACGTCCGCAATACAAGTA+TGG | - | chr3_3:13366587-13366606 | Msa0442960:intron | 45.0% | |
| AAGCACAGATATACCTGCTC+AGG | - | chr3_3:13366740-13366759 | Msa0442960:intron | 45.0% | |
| TGCATATCTGTTGTTGCAGC+AGG | + | chr3_3:13366780-13366799 | None:intergenic | 45.0% | |
| CCATCTTGTCGACATCAGAA+AGG | + | chr3_3:13366827-13366846 | None:intergenic | 45.0% | |
| CCTTTCTGATGTCGACAAGA+TGG | - | chr3_3:13366824-13366843 | Msa0442960:intron | 45.0% | |
| CCTCATCTAGCCTATTACCA+AGG | + | chr3_3:13366878-13366897 | None:intergenic | 45.0% | |
| ! | CCTTGGTAATAGGCTAGATG+AGG | - | chr3_3:13366875-13366894 | Msa0442960:intron | 45.0% |
| GAGTAGCTAACACCTTAAGG+TGG | - | chr3_3:13366924-13366943 | Msa0442960:CDS | 45.0% | |
| ACACAGGTCATTGGTATACC+AGG | + | chr3_3:13366995-13367014 | None:intergenic | 45.0% | |
| !! | CCTACGAAGTGTCGATTTGC+CGG | + | chr3_3:13362352-13362371 | None:intergenic | 50.0% |
| ! | TTTAGGGTTTCTGGGTTGCG+GGG | - | chr3_3:13362665-13362684 | Msa0442960:CDS | 50.0% |
| ! | CGATGTGTCACTGTTGTGAC+CGG | + | chr3_3:13362788-13362807 | None:intergenic | 50.0% |
| ! | TAGGTTGTGGGGGTGTGAAT+TGG | - | chr3_3:13362933-13362952 | Msa0442960:CDS | 50.0% |
| ! | AGGTTGTGGGGGTGTGAATT+GGG | - | chr3_3:13362934-13362953 | Msa0442960:CDS | 50.0% |
| ATTAGTGTCGTGACCGGTGT+CGG | + | chr3_3:13363039-13363058 | None:intergenic | 50.0% | |
| !! | AGTGGCATGATGGGTGTGAT+TGG | - | chr3_3:13363208-13363227 | Msa0442960:intron | 50.0% |
| ! | GTGAGTGTTGTGACCGGTAT+TGG | + | chr3_3:13363255-13363274 | None:intergenic | 50.0% |
| ! | TGAGGGTTTCTGGGTTATCG+GGG | - | chr3_3:13363394-13363413 | Msa0442960:intron | 50.0% |
| ! | GGGGTGTTAATTGGGTAGAG+TGG | - | chr3_3:13363413-13363432 | Msa0442960:intron | 50.0% |
| !! | AGTGGTATGACGGGTTTGAC+TGG | - | chr3_3:13363431-13363450 | Msa0442960:intron | 50.0% |
| TTGTCAAGTAGCGGCGATAG+CGG | + | chr3_3:13363694-13363713 | None:intergenic | 50.0% | |
| GCTGCTGTTGAGCTTTACGA+TGG | - | chr3_3:13363802-13363821 | Msa0442960:intron | 50.0% | |
| !! | TACACCCGGAGTTTGGGTTT+TGG | - | chr3_3:13364528-13364547 | Msa0442960:intron | 50.0% |
| ! | CCACTGAGTGTTGTCAATCG+TGG | + | chr3_3:13364893-13364912 | None:intergenic | 50.0% |
| CCACGATTGACAACACTCAG+TGG | - | chr3_3:13364890-13364909 | Msa0442960:intron | 50.0% | |
| ATGCAAGCAGACGAGGATGT+TGG | - | chr3_3:13365030-13365049 | Msa0442960:intron | 50.0% | |
| AGGGTTCCTGACTATAGCCA+CGG | - | chr3_3:13365825-13365844 | Msa0442960:intron | 50.0% | |
| ATGTTTGCCAGGAAAGCTGC+TGG | - | chr3_3:13365979-13365998 | Msa0442960:intron | 50.0% | |
| ATCATCACCAGCAGCTTTCC+TGG | + | chr3_3:13365989-13366008 | None:intergenic | 50.0% | |
| ACAGCGATGAAGAGGCTAAG+CGG | - | chr3_3:13366016-13366035 | Msa0442960:intron | 50.0% | |
| TACTGGTAGGGGAAGAGGAA+GGG | - | chr3_3:13366461-13366480 | Msa0442960:intron | 50.0% | |
| ACATCAGAAAGGGACCAACC+TGG | + | chr3_3:13366816-13366835 | None:intergenic | 50.0% | |
| CCGGCAAATCGACACTTCGT+AGG | - | chr3_3:13362349-13362368 | Msa0442960:three_prime_UTR | 55.0% | |
| ! | TTAGGGTTTCTGGGTTGCGG+GGG | - | chr3_3:13362666-13362685 | Msa0442960:CDS | 55.0% |
| GGGGTGTGAATTGGGTGGAA+TGG | - | chr3_3:13362685-13362704 | Msa0442960:CDS | 55.0% | |
| GTCACTGTTGTGACCGGTGT+CGG | + | chr3_3:13362782-13362801 | None:intergenic | 55.0% | |
| GGGGTGTGAATTGGGTAGAG+TGG | - | chr3_3:13362942-13362961 | Msa0442960:CDS | 55.0% | |
| !! | AGTGGCATGATGGGCATGAC+TGG | - | chr3_3:13362960-13362979 | Msa0442960:CDS | 55.0% |
| GCTCACATAGACACCGACAC+CGG | - | chr3_3:13363023-13363042 | Msa0442960:intron | 55.0% | |
| CCATGTCCGTGGCTATAGTC+AGG | + | chr3_3:13365834-13365853 | None:intergenic | 55.0% | |
| CCTGACTATAGCCACGGACA+TGG | - | chr3_3:13365831-13365850 | Msa0442960:intron | 55.0% | |
| ! | GTACTGGTAGGGGAAGAGGA+AGG | - | chr3_3:13366460-13366479 | Msa0442960:intron | 55.0% |
| ACTGGTAGGGGAAGAGGAAG+GGG | - | chr3_3:13366462-13366481 | Msa0442960:intron | 55.0% | |
| AGAGGAAGGGGTAGAGGAAG+AGG | - | chr3_3:13366474-13366493 | Msa0442960:intron | 55.0% | |
| TTGCAGCAGGCTCAGGCAAT+GGG | + | chr3_3:13366767-13366786 | None:intergenic | 55.0% | |
| TCTGTTGTTGCAGCAGGCTC+AGG | + | chr3_3:13366774-13366793 | None:intergenic | 55.0% | |
| CTGCAGCTTGCAGCAAACCT+TGG | - | chr3_3:13366858-13366877 | Msa0442960:intron | 55.0% | |
| ! | TGGGTTGCGGGGGTGTGAAT+TGG | - | chr3_3:13362676-13362695 | Msa0442960:CDS | 60.0% |
| ! | GGGTTGCGGGGGTGTGAATT+GGG | - | chr3_3:13362677-13362696 | Msa0442960:CDS | 60.0% |
| ! | TTGCGGGGGTGTGAATTGGG+TGG | - | chr3_3:13362680-13362699 | Msa0442960:CDS | 60.0% |
| GCTCACGTAGACACCGACAC+CGG | - | chr3_3:13362766-13362785 | Msa0442960:CDS | 60.0% | |
| CCTCAGAATGGCCATGTCCG+TGG | + | chr3_3:13365845-13365864 | None:intergenic | 60.0% | |
| CCACGGACATGGCCATTCTG+AGG | - | chr3_3:13365842-13365861 | Msa0442960:intron | 60.0% | |
| !! | GGACATGGCCATTCTGAGGC+TGG | - | chr3_3:13365846-13365865 | Msa0442960:intron | 60.0% |
| CATCAGCGCCAGCCTCAGAA+TGG | + | chr3_3:13365857-13365876 | None:intergenic | 60.0% | |
| !! | CAGCTTGAGTTGGGCCACAC+TGG | - | chr3_3:13366435-13366454 | Msa0442960:intron | 60.0% |
| !! | CTTGAGTTGGGCCACACTGG+CGG | - | chr3_3:13366438-13366457 | Msa0442960:intron | 60.0% |
| !! | CCACACTGGCGGTACTGGTA+GGG | - | chr3_3:13366449-13366468 | Msa0442960:intron | 60.0% |
| !! | CACACTGGCGGTACTGGTAG+GGG | - | chr3_3:13366450-13366469 | Msa0442960:intron | 60.0% |
| AGGGGAAGAGGAAGGGGTAG+AGG | - | chr3_3:13366468-13366487 | Msa0442960:intron | 60.0% | |
| TGCAGCAGGCTCAGGCAATG+GGG | + | chr3_3:13366766-13366785 | None:intergenic | 60.0% | |
| GTTGCAGCAGGCTCAGGCAA+TGG | + | chr3_3:13366768-13366787 | None:intergenic | 60.0% | |
| TTGGGCCACACTGGCGGTAC+TGG | - | chr3_3:13366444-13366463 | Msa0442960:intron | 65.0% | |
| !! | GCCACACTGGCGGTACTGGT+AGG | - | chr3_3:13366448-13366467 | Msa0442960:intron | 65.0% |
| CCCTACCAGTACCGCCAGTG+TGG | + | chr3_3:13366452-13366471 | None:intergenic | 65.0% | |
| !! | GGCGGTACTGGTAGGGGAAG+AGG | - | chr3_3:13366456-13366475 | Msa0442960:intron | 65.0% |
| AGGGGTAGAGGAAGAGGCCG+CGG | - | chr3_3:13366480-13366499 | Msa0442960:intron | 65.0% | |
| TCAGGCAATGGGGCCTGAGC+AGG | + | chr3_3:13366756-13366775 | None:intergenic | 65.0% | |
| AGAGGAAGAGGCCGCGGTCG+AGG | - | chr3_3:13366486-13366505 | Msa0442960:intron | 70.0% | |
| GAGGAAGAGGCCGCGGTCGA+GGG | - | chr3_3:13366487-13366506 | Msa0442960:intron | 70.0% | |
| AGGAAGAGGCCGCGGTCGAG+GGG | - | chr3_3:13366488-13366507 | Msa0442960:intron | 70.0% | |
| CAGTTCGAGCCCCTCGACCG+CGG | + | chr3_3:13366500-13366519 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 13362232 | 13367202 | 13362232 | ID=Msa0442960;Name=Msa0442960 |
| chr3_3 | mRNA | 13362232 | 13367202 | 13362232 | ID=Msa0442960-mRNA-1;Parent=Msa0442960;Name=Msa0442960-mRNA-1;_AED=0.10;_eAED=0.10;_QI=255|0.75|0.8|1|0.75|0.8|5|273|275 |
| chr3_3 | exon | 13362232 | 13362996 | 13362232 | ID=Msa0442960-mRNA-1:exon:2943;Parent=Msa0442960-mRNA-1 |
| chr3_3 | exon | 13363529 | 13363664 | 13363529 | ID=Msa0442960-mRNA-1:exon:2942;Parent=Msa0442960-mRNA-1 |
| chr3_3 | exon | 13364163 | 13364256 | 13364163 | ID=Msa0442960-mRNA-1:exon:2941;Parent=Msa0442960-mRNA-1 |
| chr3_3 | exon | 13364350 | 13364422 | 13364350 | ID=Msa0442960-mRNA-1:exon:2940;Parent=Msa0442960-mRNA-1 |
| chr3_3 | exon | 13366915 | 13367202 | 13366915 | ID=Msa0442960-mRNA-1:exon:2939;Parent=Msa0442960-mRNA-1 |
| chr3_3 | five_prime_UTR | 13366948 | 13367202 | 13366948 | ID=Msa0442960-mRNA-1:five_prime_utr;Parent=Msa0442960-mRNA-1 |
| chr3_3 | CDS | 13366915 | 13366947 | 13366915 | ID=Msa0442960-mRNA-1:cds;Parent=Msa0442960-mRNA-1 |
| chr3_3 | CDS | 13364350 | 13364422 | 13364350 | ID=Msa0442960-mRNA-1:cds;Parent=Msa0442960-mRNA-1 |
| chr3_3 | CDS | 13364163 | 13364256 | 13364163 | ID=Msa0442960-mRNA-1:cds;Parent=Msa0442960-mRNA-1 |
| chr3_3 | CDS | 13363529 | 13363664 | 13363529 | ID=Msa0442960-mRNA-1:cds;Parent=Msa0442960-mRNA-1 |
| chr3_3 | CDS | 13362505 | 13362996 | 13362505 | ID=Msa0442960-mRNA-1:cds;Parent=Msa0442960-mRNA-1 |
| chr3_3 | three_prime_UTR | 13362232 | 13362504 | 13362232 | ID=Msa0442960-mRNA-1:three_prime_utr;Parent=Msa0442960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
