Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0443490 | QJS95126.1 | 92.368 | 380 | 12 | 3 | 1 | 379 | 1 | 364 | 0.0 | 704 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0443490 | sp|Q84MZ4|TF3A_ARATH | 51.852 | 405 | 126 | 4 | 14 | 366 | 15 | 402 | 1.63e-137 | 401 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0443490 | A0A6M4W3T1 | 92.368 | 380 | 12 | 3 | 1 | 379 | 1 | 364 | 0.0 | 704 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0443490 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0443490 | MtrunA17_Chr3g0082161 | 95.956 | 272 | 11 | 0 | 108 | 379 | 13 | 284 | 0.0 | 540 |
| Msa0443490 | MtrunA17_Chr1g0164511 | 95.221 | 272 | 13 | 0 | 108 | 379 | 13 | 284 | 0.0 | 538 |
| Msa0443490 | MtrunA17_Chr1g0164501 | 94.977 | 219 | 11 | 0 | 161 | 379 | 1 | 219 | 3.34e-155 | 435 |
| Msa0443490 | MtrunA17_Chr8g0353321 | 64.808 | 287 | 91 | 3 | 89 | 367 | 14 | 298 | 8.60e-133 | 382 |
| Msa0443490 | MtrunA17_Chr3g0082151 | 97.778 | 45 | 0 | 1 | 46 | 89 | 1 | 45 | 3.44e-22 | 89.0 |
| Msa0443490 | MtrunA17_Chr1g0164521 | 97.778 | 45 | 0 | 1 | 46 | 89 | 1 | 45 | 3.44e-22 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0443490 | AT1G72050.2 | 51.852 | 405 | 126 | 4 | 14 | 366 | 15 | 402 | 1.66e-138 | 401 |
| Msa0443490 | AT1G72050.3 | 51.852 | 405 | 126 | 4 | 14 | 366 | 30 | 417 | 2.74e-138 | 401 |
| Msa0443490 | AT1G72050.1 | 53.548 | 310 | 92 | 2 | 108 | 366 | 6 | 314 | 2.21e-112 | 331 |
| Msa0443490 | AT1G72050.4 | 51.103 | 272 | 82 | 1 | 108 | 328 | 6 | 277 | 8.30e-93 | 281 |
Find 98 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTCTAATATCTCTGAATTT+TGG | 0.068375 | 3_3:-14472265 | None:intergenic |
| AATTGATGTGGGATGTAATT+AGG | 0.159176 | 3_3:-14472330 | None:intergenic |
| AGGATTTAACATGAGCTTTA+AGG | 0.225594 | 3_3:-14474205 | None:intergenic |
| ACCTTTCCACAGCCAATTTC+AGG | 0.226103 | 3_3:-14473963 | None:intergenic |
| TTCAAACCACCCTCTGATTC+AGG | 0.233682 | 3_3:-14472794 | None:intergenic |
| ATTCTTCCATTGTTGATAGA+AGG | 0.318947 | 3_3:-14472222 | None:intergenic |
| ATTGATGTGGGATGTAATTA+GGG | 0.319248 | 3_3:-14472329 | None:intergenic |
| TGTGTAGAGATTATATATTT+AGG | 0.328486 | 3_3:+14474916 | Msa0443490:three_prime_UTR |
| AAATGCTTCGGATGAATTGC+TGG | 0.347801 | 3_3:-14474309 | None:intergenic |
| AAGAAGCTGATGAAGAATTC+AGG | 0.351513 | 3_3:+14474710 | Msa0443490:CDS |
| GCAAACCTCATCCCACAATT+AGG | 0.363573 | 3_3:-14474538 | None:intergenic |
| TCGATCCTTCCGGTGTTTGT+AGG | 0.390861 | 3_3:-14472176 | None:intergenic |
| GAGTGAGGCAGGAGGCTACT+AGG | 0.391718 | 3_3:-14472143 | None:intergenic |
| ATTGAGGGGTTCGATCCTTC+CGG | 0.396355 | 3_3:-14472186 | None:intergenic |
| CAGTTTGTATGTCCTGAAAT+TGG | 0.397925 | 3_3:+14473951 | Msa0443490:CDS |
| AATCCTTGATGAAGCTTCTC+AGG | 0.400081 | 3_3:-14473572 | None:intergenic |
| ATCTACAGATACCGCAGAAT+TGG | 0.415201 | 3_3:-14472297 | None:intergenic |
| GTGTGTGGGTTTCCTAATTG+TGG | 0.422735 | 3_3:+14474526 | Msa0443490:CDS |
| AGAGAACTTGTTATTTGTGC+AGG | 0.423861 | 3_3:+14474819 | Msa0443490:CDS |
| AAACTGACATTTAAATGCTT+CGG | 0.427935 | 3_3:-14474321 | None:intergenic |
| TTTCTCTTCACCCCTCCCCT+TGG | 0.432023 | 3_3:-14474739 | None:intergenic |
| ATGTTACCTGCGACACTTGT+GGG | 0.436396 | 3_3:+14474237 | Msa0443490:CDS |
| TGGATCATACTTCTCTCTAT+AGG | 0.439401 | 3_3:+14474855 | Msa0443490:three_prime_UTR |
| GGAATTGTTGTGAAAATTGA+GGG | 0.450105 | 3_3:-14472201 | None:intergenic |
| ATGTAGCCTTGAAGATTGTA+AGG | 0.466096 | 3_3:+14473749 | Msa0443490:intron |
| CCACAGTAGAAATGTTGGTT+AGG | 0.467382 | 3_3:+14474770 | Msa0443490:CDS |
| TGTGTGGGTTTCCTAATTGT+GGG | 0.470341 | 3_3:+14474527 | Msa0443490:CDS |
| AGCATTTAAATGTCAGTTTG+AGG | 0.474911 | 3_3:+14474325 | Msa0443490:CDS |
| GCAGAATGAATGAGTGAGGC+AGG | 0.482188 | 3_3:-14472154 | None:intergenic |
| GCATTTAAATGTCAGTTTGA+GGG | 0.484487 | 3_3:+14474326 | Msa0443490:CDS |
| AGGAATTGTTGTGAAAATTG+AGG | 0.487217 | 3_3:-14472202 | None:intergenic |
| AGCTTTAAGGCACTCGGAGT+TGG | 0.488279 | 3_3:-14474192 | None:intergenic |
| CAGGTCAAGGCCAAGGGGAG+GGG | 0.490449 | 3_3:+14474729 | Msa0443490:CDS |
| TGTCGCAGGTAACATATTGA+TGG | 0.494319 | 3_3:-14474229 | None:intergenic |
| AGCTCGCCTTACAATCTTCA+AGG | 0.496505 | 3_3:-14473755 | None:intergenic |
| CCTATCGAGAATTGCAAAAG+TGG | 0.504025 | 3_3:+14473840 | Msa0443490:CDS |
| TCAGGTCAAGGCCAAGGGGA+GGG | 0.518065 | 3_3:+14474728 | Msa0443490:CDS |
| CTAACCAACATTTCTACTGT+GGG | 0.523055 | 3_3:-14474769 | None:intergenic |
| CTAAAAGTTATGTGGTGACC+TGG | 0.524016 | 3_3:+14474878 | Msa0443490:three_prime_UTR |
| TGAAACTGAACCTGAATCAG+AGG | 0.525785 | 3_3:+14472784 | Msa0443490:CDS |
| CAAGTAAAGCCGTTTGTGTG+TGG | 0.530955 | 3_3:+14474511 | Msa0443490:CDS |
| GGTTTCCTAATTGTGGGATG+AGG | 0.531394 | 3_3:+14474533 | Msa0443490:CDS |
| CTTAGTCCCACAAGTGTCGC+AGG | 0.534089 | 3_3:-14474243 | None:intergenic |
| AACATGAGCTTTAAGGCACT+CGG | 0.538697 | 3_3:-14474198 | None:intergenic |
| AGTGAGGCAGGAGGCTACTA+GGG | 0.539904 | 3_3:-14472142 | None:intergenic |
| AAGAATTCAGGTCAAGGCCA+AGG | 0.544513 | 3_3:+14474722 | Msa0443490:CDS |
| AAGTAAAGCCGTTTGTGTGT+GGG | 0.550967 | 3_3:+14474512 | Msa0443490:CDS |
| GTATGTCCTGAAATTGGCTG+TGG | 0.551180 | 3_3:+14473957 | Msa0443490:CDS |
| CGTCACCTTCTACAACATCA+AGG | 0.557665 | 3_3:+14473801 | Msa0443490:CDS |
| AGGGTTCGAGATAAGTGAGA+AGG | 0.558748 | 3_3:-14472123 | None:intergenic |
| TTAGGAAACCCACACACAAA+CGG | 0.558755 | 3_3:-14474520 | None:intergenic |
| TCTATAGGCTAAAAGTTATG+TGG | 0.560654 | 3_3:+14474870 | Msa0443490:three_prime_UTR |
| CCTCCTGAGAAGCTTCATCA+AGG | 0.564122 | 3_3:+14473569 | Msa0443490:CDS |
| TTCATTCTGCCTACAAACAC+CGG | 0.564980 | 3_3:+14472167 | Msa0443490:five_prime_UTR |
| AGTTCTCTAATTGACTAGGT+GGG | 0.566365 | 3_3:-14474804 | None:intergenic |
| AACCAACATTTCTACTGTGG+GGG | 0.572337 | 3_3:-14474767 | None:intergenic |
| GCAGGTAACATATTGATGGC+AGG | 0.575689 | 3_3:-14474225 | None:intergenic |
| CCACATCAATTCTGAACACA+AGG | 0.577487 | 3_3:+14472342 | Msa0443490:CDS |
| TATGTTACCTGCGACACTTG+TGG | 0.581009 | 3_3:+14474236 | Msa0443490:CDS |
| CGCTATTACTGCCAATTCTG+CGG | 0.581521 | 3_3:+14472286 | Msa0443490:CDS |
| TTCAGGTCAAGGCCAAGGGG+AGG | 0.583372 | 3_3:+14474727 | Msa0443490:CDS |
| GTGCAGGATTGTCAGTGAGA+TGG | 0.583628 | 3_3:+14474835 | Msa0443490:exon |
| AAGTTCTCTAATTGACTAGG+TGG | 0.584481 | 3_3:-14474805 | None:intergenic |
| AGAATTCAGGTCAAGGCCAA+GGG | 0.585579 | 3_3:+14474723 | Msa0443490:CDS |
| GAAGTGGTGTGCTTAGAGCC+TGG | 0.587135 | 3_3:+14474152 | Msa0443490:CDS |
| CCTAACCAACATTTCTACTG+TGG | 0.589537 | 3_3:-14474770 | None:intergenic |
| TAAGGCGAGCTACAGAAGAA+AGG | 0.590587 | 3_3:+14473767 | Msa0443490:CDS |
| ACAATTCCTTCTATCAACAA+TGG | 0.591925 | 3_3:+14472216 | Msa0443490:exon |
| TAGGCTTGATACAATTGAAG+TGG | 0.594031 | 3_3:+14474136 | Msa0443490:intron |
| GGGTTCGAGATAAGTGAGAA+GGG | 0.600902 | 3_3:-14472122 | None:intergenic |
| CCTTGTGTTCAGAATTGATG+TGG | 0.601822 | 3_3:-14472342 | None:intergenic |
| AACTGAAGAAGAATATGAAG+AGG | 0.602793 | 3_3:+14474267 | Msa0443490:CDS |
| TAATCTTCATAAGCATGAGA+AGG | 0.603913 | 3_3:+14474477 | Msa0443490:CDS |
| TCCTGAAATTGGCTGTGGAA+AGG | 0.608455 | 3_3:+14473962 | Msa0443490:CDS |
| TAATTGAACAAATACCTCGA+GGG | 0.608678 | 3_3:-14472891 | None:intergenic |
| GTTCTCTAATTGACTAGGTG+GGG | 0.608887 | 3_3:-14474803 | None:intergenic |
| CAGAAGCATGAAGATTCTCA+TGG | 0.611902 | 3_3:+14474008 | Msa0443490:CDS |
| GTCACCTTCTACAACATCAA+GGG | 0.613362 | 3_3:+14473802 | Msa0443490:CDS |
| TTTGAAAGCTAATACTTGTG+AGG | 0.617741 | 3_3:+14472811 | Msa0443490:CDS |
| AATTGCTGGCTTCGTGTGTG+CGG | 0.618486 | 3_3:-14474295 | None:intergenic |
| ACCAACATTTCTACTGTGGG+GGG | 0.621015 | 3_3:-14474766 | None:intergenic |
| TTCTGCCTACAAACACCGGA+AGG | 0.629048 | 3_3:+14472171 | Msa0443490:five_prime_UTR |
| CTGATGAAGAATTCAGGTCA+AGG | 0.636136 | 3_3:+14474716 | Msa0443490:CDS |
| AGTTCTACCCCTCCTCGTAG+TGG | 0.640750 | 3_3:+14473915 | Msa0443490:CDS |
| CTTGTGTTCAGAATTGATGT+GGG | 0.647147 | 3_3:-14472341 | None:intergenic |
| AACAAGTTCTCTAATTGACT+AGG | 0.649660 | 3_3:-14474808 | None:intergenic |
| GTCACGCTCAATTCAAAACG+AGG | 0.653284 | 3_3:+14473603 | Msa0443490:CDS |
| CCTTGATGAAGCTTCTCAGG+AGG | 0.656245 | 3_3:-14473569 | None:intergenic |
| TAACCAACATTTCTACTGTG+GGG | 0.659300 | 3_3:-14474768 | None:intergenic |
| GAAACTGAACCTGAATCAGA+GGG | 0.660004 | 3_3:+14472785 | Msa0443490:CDS |
| GAATTGTTGTGAAAATTGAG+GGG | 0.663373 | 3_3:-14472200 | None:intergenic |
| GCTAATACTTGTGAGGAATG+TGG | 0.673142 | 3_3:+14472818 | Msa0443490:CDS |
| GTAGGCAGAATGAATGAGTG+AGG | 0.676225 | 3_3:-14472158 | None:intergenic |
| GAATGAATGAGTGAGGCAGG+AGG | 0.692760 | 3_3:-14472151 | None:intergenic |
| GAATTCAGGTCAAGGCCAAG+GGG | 0.693128 | 3_3:+14474724 | Msa0443490:CDS |
| ACAATACAATCAATCAAACC+AGG | 0.696963 | 3_3:-14474896 | None:intergenic |
| ACTGAACCTGAATCAGAGGG+TGG | 0.697062 | 3_3:+14472788 | Msa0443490:CDS |
| TATGCAAAGTCATTCCCTCG+AGG | 0.752078 | 3_3:+14472877 | Msa0443490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTAGTTTTATGATTTT+AGG | + | chr3_3:14472582-14472601 | Msa0443490:intron | 10.0% |
| !!! | TTTTTTTTTATGTCAATTTT+AGG | + | chr3_3:14472739-14472758 | Msa0443490:intron | 10.0% |
| !! | TTATACTTTATAATTCATTT+AGG | + | chr3_3:14472985-14473004 | Msa0443490:intron | 10.0% |
| !! | AAAATATGAATTTGTATATT+TGG | + | chr3_3:14473336-14473355 | Msa0443490:intron | 10.0% |
| !! | AATGATCTATAAAATAATTA+TGG | + | chr3_3:14473450-14473469 | Msa0443490:intron | 10.0% |
| !!! | TGATCTTTTTTTATATATAA+AGG | + | chr3_3:14474989-14475008 | Msa0443490:three_prime_UTR | 10.0% |
| !! | TATAAAATTCCTAATTGTTT+AGG | + | chr3_3:14472608-14472627 | Msa0443490:intron | 15.0% |
| !! | ATAAACTAGTTAAATTTAGA+AGG | - | chr3_3:14472969-14472988 | None:intergenic | 15.0% |
| !! | ACTTTCATAAATCTAAATAA+AGG | - | chr3_3:14474078-14474097 | None:intergenic | 15.0% |
| !! | TTAAAAAATGTAACAAACTT+TGG | - | chr3_3:14474425-14474444 | None:intergenic | 15.0% |
| !!! | ATCTATAGTTTTAACCAAAT+GGG | + | chr3_3:14472393-14472412 | Msa0443490:intron | 20.0% |
| !!! | ATTTTTTGAAGAAAATTGAG+TGG | - | chr3_3:14472419-14472438 | None:intergenic | 20.0% |
| !!! | ATGAACAAATTTTGAGTATT+AGG | + | chr3_3:14472437-14472456 | Msa0443490:intron | 20.0% |
| !!! | TGAACAAATTTTGAGTATTA+GGG | + | chr3_3:14472438-14472457 | Msa0443490:intron | 20.0% |
| !! | TCTAGAAAAGTAAAACAATT+AGG | - | chr3_3:14472498-14472517 | None:intergenic | 20.0% |
| !! | AAACTTTAACCTAAACAATT+AGG | - | chr3_3:14472620-14472639 | None:intergenic | 20.0% |
| !!! | TTTTTTATGTCAATTTTAGG+AGG | + | chr3_3:14472742-14472761 | Msa0443490:intron | 20.0% |
| !! | TATAAACTAGTTAAATCTTG+AGG | - | chr3_3:14473077-14473096 | None:intergenic | 20.0% |
| !!! | TTGTTTTTGATAAAACACTA+TGG | + | chr3_3:14473151-14473170 | Msa0443490:intron | 20.0% |
| !! | TATCATTAAATTCGTTTGTA+TGG | + | chr3_3:14473249-14473268 | Msa0443490:intron | 20.0% |
| !!! | ATATGCATGTTTTATATGTT+TGG | + | chr3_3:14473287-14473306 | Msa0443490:intron | 20.0% |
| !!! | ATGTTTTATATGTTTGGTTT+TGG | + | chr3_3:14473293-14473312 | Msa0443490:intron | 20.0% |
| !!! | TGAATTTGTATATTTGGTTT+TGG | + | chr3_3:14473342-14473361 | Msa0443490:intron | 20.0% |
| !!! | TTTTTAAAGAAATAGAACTC+TGG | - | chr3_3:14473369-14473388 | None:intergenic | 20.0% |
| !!! | CATTTTTTAACTTCTAATTG+TGG | + | chr3_3:14474435-14474454 | Msa0443490:intron | 20.0% |
| !!! | ATTTTTTATACCACAAGAAT+AGG | - | chr3_3:14474637-14474656 | None:intergenic | 20.0% |
| !! | TCAAGATTTACTTCATATAT+AGG | + | chr3_3:14474678-14474697 | Msa0443490:intron | 20.0% |
| !! | CAAGATTTACTTCATATATA+GGG | + | chr3_3:14474679-14474698 | Msa0443490:intron | 20.0% |
| !! | TGTGTAGAGATTATATATTT+AGG | + | chr3_3:14474916-14474935 | Msa0443490:three_prime_UTR | 20.0% |
| !! | GTCTAATATCTCTGAATTTT+GGG | - | chr3_3:14472267-14472286 | None:intergenic | 25.0% |
| !!! | GATCTATAGTTTTAACCAAA+TGG | + | chr3_3:14472392-14472411 | Msa0443490:intron | 25.0% |
| !!! | TATTAGGGTTTTGTTTGTTA+AGG | + | chr3_3:14472453-14472472 | Msa0443490:intron | 25.0% |
| ! | TATCTACAGTTTAAACCTAA+TGG | + | chr3_3:14472530-14472549 | Msa0443490:intron | 25.0% |
| ! | ATCTACAGTTTAAACCTAAT+GGG | + | chr3_3:14472531-14472550 | Msa0443490:intron | 25.0% |
| ! | TGTTGTGTATACTTGAATAT+TGG | + | chr3_3:14473049-14473068 | Msa0443490:intron | 25.0% |
| ! | GTTGTGTATACTTGAATATT+GGG | + | chr3_3:14473050-14473069 | Msa0443490:intron | 25.0% |
| ! | TTGTGTATACTTGAATATTG+GGG | + | chr3_3:14473051-14473070 | Msa0443490:intron | 25.0% |
| ! | GTTATTGTTGAAATTCAGTA+AGG | + | chr3_3:14473216-14473235 | Msa0443490:intron | 25.0% |
| !!! | TTTTTTAAGAAAAAGAACCC+TGG | - | chr3_3:14473320-14473339 | None:intergenic | 25.0% |
| ! | AGTTGACAAAATTGAAAGAA+AGG | - | chr3_3:14474041-14474060 | None:intergenic | 25.0% |
| ! | AAACTGACATTTAAATGCTT+CGG | - | chr3_3:14474324-14474343 | None:intergenic | 25.0% |
| GAATTGTTGTGAAAATTGAG+GGG | - | chr3_3:14472203-14472222 | None:intergenic | 30.0% | |
| GGAATTGTTGTGAAAATTGA+GGG | - | chr3_3:14472204-14472223 | None:intergenic | 30.0% | |
| AGGAATTGTTGTGAAAATTG+AGG | - | chr3_3:14472205-14472224 | None:intergenic | 30.0% | |
| ACAATTCCTTCTATCAACAA+TGG | + | chr3_3:14472216-14472235 | Msa0443490:exon | 30.0% | |
| ! | ATTCTTCCATTGTTGATAGA+AGG | - | chr3_3:14472225-14472244 | None:intergenic | 30.0% |
| ! | CGTCTAATATCTCTGAATTT+TGG | - | chr3_3:14472268-14472287 | None:intergenic | 30.0% |
| !!! | GGATGTAATTAGGGTTTTTT+TGG | - | chr3_3:14472323-14472342 | None:intergenic | 30.0% |
| ATTGATGTGGGATGTAATTA+GGG | - | chr3_3:14472332-14472351 | None:intergenic | 30.0% | |
| AATTGATGTGGGATGTAATT+AGG | - | chr3_3:14472333-14472352 | None:intergenic | 30.0% | |
| TTATGCAATTAGAGCTTCTA+CGG | + | chr3_3:14472661-14472680 | Msa0443490:intron | 30.0% | |
| TTTGAAAGCTAATACTTGTG+AGG | + | chr3_3:14472811-14472830 | Msa0443490:CDS | 30.0% | |
| TAATTGAACAAATACCTCGA+GGG | - | chr3_3:14472894-14472913 | None:intergenic | 30.0% | |
| ATAATTGAACAAATACCTCG+AGG | - | chr3_3:14472895-14472914 | None:intergenic | 30.0% | |
| ! | TTTAGAAGGCTCTAATATAC+AGG | - | chr3_3:14472955-14472974 | None:intergenic | 30.0% |
| TTGTTGAAATTCAGTAAGGA+TGG | + | chr3_3:14473220-14473239 | Msa0443490:intron | 30.0% | |
| !! | CTAAAGATACATGTTTTTGC+AGG | + | chr3_3:14473405-14473424 | Msa0443490:intron | 30.0% |
| ! | ACATTATAGTGTGAAAGCAT+TGG | + | chr3_3:14473473-14473492 | Msa0443490:intron | 30.0% |
| AAAACCTTTATTCTGCAGTT+AGG | + | chr3_3:14474117-14474136 | Msa0443490:intron | 30.0% | |
| AGGATTTAACATGAGCTTTA+AGG | - | chr3_3:14474208-14474227 | None:intergenic | 30.0% | |
| AACTGAAGAAGAATATGAAG+AGG | + | chr3_3:14474267-14474286 | Msa0443490:CDS | 30.0% | |
| AGCATTTAAATGTCAGTTTG+AGG | + | chr3_3:14474325-14474344 | Msa0443490:CDS | 30.0% | |
| GCATTTAAATGTCAGTTTGA+GGG | + | chr3_3:14474326-14474345 | Msa0443490:CDS | 30.0% | |
| TAATCTTCATAAGCATGAGA+AGG | + | chr3_3:14474477-14474496 | Msa0443490:CDS | 30.0% | |
| AACAAGTTCTCTAATTGACT+AGG | - | chr3_3:14474811-14474830 | None:intergenic | 30.0% | |
| TCTATAGGCTAAAAGTTATG+TGG | + | chr3_3:14474870-14474889 | Msa0443490:three_prime_UTR | 30.0% | |
| ACAATACAATCAATCAAACC+AGG | - | chr3_3:14474899-14474918 | None:intergenic | 30.0% | |
| !!! | ATTTTGGGATTGCATCGTTT+TGG | - | chr3_3:14472252-14472271 | None:intergenic | 35.0% |
| CTTGTGTTCAGAATTGATGT+GGG | - | chr3_3:14472344-14472363 | None:intergenic | 35.0% | |
| ATGAAATTGAGTGACCCATT+AGG | - | chr3_3:14472548-14472567 | None:intergenic | 35.0% | |
| !! | ATGTCAATTTTAGGAGGAGA+TGG | + | chr3_3:14472748-14472767 | Msa0443490:intron | 35.0% |
| !!! | TATATGTTTGGTTTTGGTCC+AGG | + | chr3_3:14473299-14473318 | Msa0443490:intron | 35.0% |
| !!! | ATATGTTTGGTTTTGGTCCA+GGG | + | chr3_3:14473300-14473319 | Msa0443490:intron | 35.0% |
| CATATTGGAGTTCTTTGTCT+GGG | - | chr3_3:14473501-14473520 | None:intergenic | 35.0% | |
| !! | TCTCTTGTGATTTGTTACAG+AGG | + | chr3_3:14473718-14473737 | Msa0443490:intron | 35.0% |
| TCTTCAAGGCTACATACAAA+TGG | - | chr3_3:14473744-14473763 | None:intergenic | 35.0% | |
| ! | ATGTAGCCTTGAAGATTGTA+AGG | + | chr3_3:14473749-14473768 | Msa0443490:intron | 35.0% |
| ! | TTTTCCCTTGATGTTGTAGA+AGG | - | chr3_3:14473809-14473828 | None:intergenic | 35.0% |
| CAGTTTGTATGTCCTGAAAT+TGG | + | chr3_3:14473951-14473970 | Msa0443490:CDS | 35.0% | |
| TAGGCTTGATACAATTGAAG+TGG | + | chr3_3:14474136-14474155 | Msa0443490:intron | 35.0% | |
| GTGAAAAATTTCATGCAACC+AGG | - | chr3_3:14474173-14474192 | None:intergenic | 35.0% | |
| TATGCAATGCCAATGTATGA+TGG | - | chr3_3:14474388-14474407 | None:intergenic | 35.0% | |
| ! | AAGGGCAAAAAGATGTTTTG+CGG | - | chr3_3:14474596-14474615 | None:intergenic | 35.0% |
| TTATACCACAAGAATAGGCA+TGG | - | chr3_3:14474632-14474651 | None:intergenic | 35.0% | |
| AAGAAGCTGATGAAGAATTC+AGG | + | chr3_3:14474710-14474729 | Msa0443490:CDS | 35.0% | |
| TAACCAACATTTCTACTGTG+GGG | - | chr3_3:14474771-14474790 | None:intergenic | 35.0% | |
| CTAACCAACATTTCTACTGT+GGG | - | chr3_3:14474772-14474791 | None:intergenic | 35.0% | |
| AGTTCTCTAATTGACTAGGT+GGG | - | chr3_3:14474807-14474826 | None:intergenic | 35.0% | |
| AAGTTCTCTAATTGACTAGG+TGG | - | chr3_3:14474808-14474827 | None:intergenic | 35.0% | |
| !! | AGAGAACTTGTTATTTGTGC+AGG | + | chr3_3:14474819-14474838 | Msa0443490:CDS | 35.0% |
| TGGATCATACTTCTCTCTAT+AGG | + | chr3_3:14474855-14474874 | Msa0443490:three_prime_UTR | 35.0% | |
| TTCATTCTGCCTACAAACAC+CGG | + | chr3_3:14472167-14472186 | Msa0443490:five_prime_UTR | 40.0% | |
| ATCTACAGATACCGCAGAAT+TGG | - | chr3_3:14472300-14472319 | None:intergenic | 40.0% | |
| CCTTGTGTTCAGAATTGATG+TGG | - | chr3_3:14472345-14472364 | None:intergenic | 40.0% | |
| CCACATCAATTCTGAACACA+AGG | + | chr3_3:14472342-14472361 | Msa0443490:CDS | 40.0% | |
| AGAAAATTGAGTGGCCCATT+TGG | - | chr3_3:14472410-14472429 | None:intergenic | 40.0% | |
| CATGTGCGATTGATTGTGTA+TGG | + | chr3_3:14472689-14472708 | Msa0443490:intron | 40.0% | |
| TGAAACTGAACCTGAATCAG+AGG | + | chr3_3:14472784-14472803 | Msa0443490:CDS | 40.0% | |
| GAAACTGAACCTGAATCAGA+GGG | + | chr3_3:14472785-14472804 | Msa0443490:CDS | 40.0% | |
| GCTAATACTTGTGAGGAATG+TGG | + | chr3_3:14472818-14472837 | Msa0443490:CDS | 40.0% | |
| ATAACAACCTCCCACTAAGT+GGG | - | chr3_3:14473201-14473220 | None:intergenic | 40.0% | |
| AATAACAACCTCCCACTAAG+TGG | - | chr3_3:14473202-14473221 | None:intergenic | 40.0% | |
| GCATATTGGAGTTCTTTGTC+TGG | - | chr3_3:14473502-14473521 | None:intergenic | 40.0% | |
| TACCTGATACTAATCCACCA+AGG | - | chr3_3:14473543-14473562 | None:intergenic | 40.0% | |
| !! | TTGGTGGATTAGTATCAGGT+AGG | + | chr3_3:14473542-14473561 | Msa0443490:intron | 40.0% |
| !! | TGGTGGATTAGTATCAGGTA+GGG | + | chr3_3:14473543-14473562 | Msa0443490:intron | 40.0% |
| AATCCTTGATGAAGCTTCTC+AGG | - | chr3_3:14473575-14473594 | None:intergenic | 40.0% | |
| ! | CTTCATCAAGGATTTTGCCT+CGG | + | chr3_3:14473581-14473600 | Msa0443490:CDS | 40.0% |
| CAAAGCTGATCAGTAGTTGT+CGG | + | chr3_3:14473662-14473681 | Msa0443490:intron | 40.0% | |
| GTCACCTTCTACAACATCAA+GGG | + | chr3_3:14473802-14473821 | Msa0443490:CDS | 40.0% | |
| !! | CCACTTTTGCAATTCTCGAT+AGG | - | chr3_3:14473843-14473862 | None:intergenic | 40.0% |
| CCTATCGAGAATTGCAAAAG+TGG | + | chr3_3:14473840-14473859 | Msa0443490:CDS | 40.0% | |
| ! | TTCTGATTTTCACCACTACG+AGG | - | chr3_3:14473930-14473949 | None:intergenic | 40.0% |
| ! | CAGAAGCATGAAGATTCTCA+TGG | + | chr3_3:14474008-14474027 | Msa0443490:CDS | 40.0% |
| CAAGCCTAACTGCAGAATAA+AGG | - | chr3_3:14474124-14474143 | None:intergenic | 40.0% | |
| !! | AACATGAGCTTTAAGGCACT+CGG | - | chr3_3:14474201-14474220 | None:intergenic | 40.0% |
| TGTCGCAGGTAACATATTGA+TGG | - | chr3_3:14474232-14474251 | None:intergenic | 40.0% | |
| AAATGCTTCGGATGAATTGC+TGG | - | chr3_3:14474312-14474331 | None:intergenic | 40.0% | |
| ATACCTCCTCCATCATACAT+TGG | + | chr3_3:14474376-14474395 | Msa0443490:intron | 40.0% | |
| AAGTAAAGCCGTTTGTGTGT+GGG | + | chr3_3:14474512-14474531 | Msa0443490:CDS | 40.0% | |
| TTAGGAAACCCACACACAAA+CGG | - | chr3_3:14474523-14474542 | None:intergenic | 40.0% | |
| TGTGTGGGTTTCCTAATTGT+GGG | + | chr3_3:14474527-14474546 | Msa0443490:CDS | 40.0% | |
| CTGATGAAGAATTCAGGTCA+AGG | + | chr3_3:14474716-14474735 | Msa0443490:CDS | 40.0% | |
| AACCAACATTTCTACTGTGG+GGG | - | chr3_3:14474770-14474789 | None:intergenic | 40.0% | |
| CCTAACCAACATTTCTACTG+TGG | - | chr3_3:14474773-14474792 | None:intergenic | 40.0% | |
| ! | CCACAGTAGAAATGTTGGTT+AGG | + | chr3_3:14474770-14474789 | Msa0443490:CDS | 40.0% |
| GTTCTCTAATTGACTAGGTG+GGG | - | chr3_3:14474806-14474825 | None:intergenic | 40.0% | |
| CTAAAAGTTATGTGGTGACC+TGG | + | chr3_3:14474878-14474897 | Msa0443490:three_prime_UTR | 40.0% | |
| GGGTTCGAGATAAGTGAGAA+GGG | - | chr3_3:14472125-14472144 | None:intergenic | 45.0% | |
| AGGGTTCGAGATAAGTGAGA+AGG | - | chr3_3:14472126-14472145 | None:intergenic | 45.0% | |
| GTAGGCAGAATGAATGAGTG+AGG | - | chr3_3:14472161-14472180 | None:intergenic | 45.0% | |
| CGCTATTACTGCCAATTCTG+CGG | + | chr3_3:14472286-14472305 | Msa0443490:CDS | 45.0% | |
| TTCAAACCACCCTCTGATTC+AGG | - | chr3_3:14472797-14472816 | None:intergenic | 45.0% | |
| TATGCAAAGTCATTCCCTCG+AGG | + | chr3_3:14472877-14472896 | Msa0443490:CDS | 45.0% | |
| TAACAACCTCCCACTAAGTG+GGG | - | chr3_3:14473200-14473219 | None:intergenic | 45.0% | |
| AAAGAACTCCAATATGCGCG+AGG | + | chr3_3:14473505-14473524 | Msa0443490:intron | 45.0% | |
| ! | TTTTGAATTGAGCGTGACCG+AGG | - | chr3_3:14473601-14473620 | None:intergenic | 45.0% |
| GTCACGCTCAATTCAAAACG+AGG | + | chr3_3:14473603-14473622 | Msa0443490:CDS | 45.0% | |
| AGCTCGCCTTACAATCTTCA+AGG | - | chr3_3:14473758-14473777 | None:intergenic | 45.0% | |
| TAAGGCGAGCTACAGAAGAA+AGG | + | chr3_3:14473767-14473786 | Msa0443490:CDS | 45.0% | |
| CGTCACCTTCTACAACATCA+AGG | + | chr3_3:14473801-14473820 | Msa0443490:CDS | 45.0% | |
| ! | ATTTTCACCACTACGAGGAG+GGG | - | chr3_3:14473925-14473944 | None:intergenic | 45.0% |
| ! | GATTTTCACCACTACGAGGA+GGG | - | chr3_3:14473926-14473945 | None:intergenic | 45.0% |
| ! | TGATTTTCACCACTACGAGG+AGG | - | chr3_3:14473927-14473946 | None:intergenic | 45.0% |
| GTATGTCCTGAAATTGGCTG+TGG | + | chr3_3:14473957-14473976 | Msa0443490:CDS | 45.0% | |
| TCCTGAAATTGGCTGTGGAA+AGG | + | chr3_3:14473962-14473981 | Msa0443490:CDS | 45.0% | |
| ACCTTTCCACAGCCAATTTC+AGG | - | chr3_3:14473966-14473985 | None:intergenic | 45.0% | |
| ! | GCAGGTAACATATTGATGGC+AGG | - | chr3_3:14474228-14474247 | None:intergenic | 45.0% |
| TATGTTACCTGCGACACTTG+TGG | + | chr3_3:14474236-14474255 | Msa0443490:CDS | 45.0% | |
| ATGTTACCTGCGACACTTGT+GGG | + | chr3_3:14474237-14474256 | Msa0443490:CDS | 45.0% | |
| ! | ATGCCAATGTATGATGGAGG+AGG | - | chr3_3:14474382-14474401 | None:intergenic | 45.0% |
| GCAATGCCAATGTATGATGG+AGG | - | chr3_3:14474385-14474404 | None:intergenic | 45.0% | |
| CAAGTAAAGCCGTTTGTGTG+TGG | + | chr3_3:14474511-14474530 | Msa0443490:CDS | 45.0% | |
| GTGTGTGGGTTTCCTAATTG+TGG | + | chr3_3:14474526-14474545 | Msa0443490:CDS | 45.0% | |
| GGTTTCCTAATTGTGGGATG+AGG | + | chr3_3:14474533-14474552 | Msa0443490:CDS | 45.0% | |
| GCAAACCTCATCCCACAATT+AGG | - | chr3_3:14474541-14474560 | None:intergenic | 45.0% | |
| CATGGACGGAGAACTTACAA+GGG | - | chr3_3:14474614-14474633 | None:intergenic | 45.0% | |
| ACCACAAGAATAGGCATGGA+CGG | - | chr3_3:14474628-14474647 | None:intergenic | 45.0% | |
| AAGAATTCAGGTCAAGGCCA+AGG | + | chr3_3:14474722-14474741 | Msa0443490:CDS | 45.0% | |
| AGAATTCAGGTCAAGGCCAA+GGG | + | chr3_3:14474723-14474742 | Msa0443490:CDS | 45.0% | |
| ACCAACATTTCTACTGTGGG+GGG | - | chr3_3:14474769-14474788 | None:intergenic | 45.0% | |
| GAATGAATGAGTGAGGCAGG+AGG | - | chr3_3:14472154-14472173 | None:intergenic | 50.0% | |
| GCAGAATGAATGAGTGAGGC+AGG | - | chr3_3:14472157-14472176 | None:intergenic | 50.0% | |
| TTCTGCCTACAAACACCGGA+AGG | + | chr3_3:14472171-14472190 | Msa0443490:five_prime_UTR | 50.0% | |
| TCGATCCTTCCGGTGTTTGT+AGG | - | chr3_3:14472179-14472198 | None:intergenic | 50.0% | |
| ATTGAGGGGTTCGATCCTTC+CGG | - | chr3_3:14472189-14472208 | None:intergenic | 50.0% | |
| ACTGAACCTGAATCAGAGGG+TGG | + | chr3_3:14472788-14472807 | Msa0443490:CDS | 50.0% | |
| ATGTAGCCAACCCCACTTAG+TGG | + | chr3_3:14473187-14473206 | Msa0443490:intron | 50.0% | |
| TGTAGCCAACCCCACTTAGT+GGG | + | chr3_3:14473188-14473207 | Msa0443490:intron | 50.0% | |
| !! | GGCCTTGGTGGATTAGTATC+AGG | + | chr3_3:14473538-14473557 | Msa0443490:intron | 50.0% |
| CCTTGATGAAGCTTCTCAGG+AGG | - | chr3_3:14473572-14473591 | None:intergenic | 50.0% | |
| CCTCCTGAGAAGCTTCATCA+AGG | + | chr3_3:14473569-14473588 | Msa0443490:CDS | 50.0% | |
| !! | AGCTTTAAGGCACTCGGAGT+TGG | - | chr3_3:14474195-14474214 | None:intergenic | 50.0% |
| !! | AATTGCTGGCTTCGTGTGTG+CGG | - | chr3_3:14474298-14474317 | None:intergenic | 50.0% |
| GCATGGACGGAGAACTTACA+AGG | - | chr3_3:14474615-14474634 | None:intergenic | 50.0% | |
| TCCGTCCATGCCTATTCTTG+TGG | + | chr3_3:14474624-14474643 | Msa0443490:intron | 50.0% | |
| GAATTCAGGTCAAGGCCAAG+GGG | + | chr3_3:14474724-14474743 | Msa0443490:CDS | 50.0% | |
| TCCCCCCACAGTAGAAATGT+TGG | + | chr3_3:14474765-14474784 | Msa0443490:CDS | 50.0% | |
| GTGCAGGATTGTCAGTGAGA+TGG | + | chr3_3:14474835-14474854 | Msa0443490:exon | 50.0% | |
| AGTGAGGCAGGAGGCTACTA+GGG | - | chr3_3:14472145-14472164 | None:intergenic | 55.0% | |
| AACCTCCCACTAAGTGGGGT+TGG | - | chr3_3:14473196-14473215 | None:intergenic | 55.0% | |
| GCGTAATGCCTCGCGCATAT+TGG | - | chr3_3:14473516-14473535 | None:intergenic | 55.0% | |
| ! | TATGCGCGAGGCATTACGCT+TGG | + | chr3_3:14473517-14473536 | Msa0443490:intron | 55.0% |
| AGTTCTACCCCTCCTCGTAG+TGG | + | chr3_3:14473915-14473934 | Msa0443490:CDS | 55.0% | |
| GAAGTGGTGTGCTTAGAGCC+TGG | + | chr3_3:14474152-14474171 | Msa0443490:CDS | 55.0% | |
| ! | CTTAGTCCCACAAGTGTCGC+AGG | - | chr3_3:14474246-14474265 | None:intergenic | 55.0% |
| TTTCTCTTCACCCCTCCCCT+TGG | - | chr3_3:14474742-14474761 | None:intergenic | 55.0% | |
| GAGTGAGGCAGGAGGCTACT+AGG | - | chr3_3:14472146-14472165 | None:intergenic | 60.0% | |
| AGCCAACCCCACTTAGTGGG+AGG | + | chr3_3:14473191-14473210 | Msa0443490:intron | 60.0% | |
| ! | CGAGGCATTACGCTTGGCCT+TGG | + | chr3_3:14473523-14473542 | Msa0443490:intron | 60.0% |
| !! | GGCATTACGCTTGGCCTTGG+TGG | + | chr3_3:14473526-14473545 | Msa0443490:intron | 60.0% |
| TTCAGGTCAAGGCCAAGGGG+AGG | + | chr3_3:14474727-14474746 | Msa0443490:CDS | 60.0% | |
| TCAGGTCAAGGCCAAGGGGA+GGG | + | chr3_3:14474728-14474747 | Msa0443490:CDS | 60.0% | |
| CAGGTCAAGGCCAAGGGGAG+GGG | + | chr3_3:14474729-14474748 | Msa0443490:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 14472120 | 14475036 | 14472120 | ID=Msa0443490;Name=Msa0443490 |
| chr3_3 | mRNA | 14472120 | 14475036 | 14472120 | ID=Msa0443490-mRNA-1;Parent=Msa0443490;Name=Msa0443490-mRNA-1;_AED=0.12;_eAED=0.12;_QI=115|0.5|0.57|1|1|1|7|184|379 |
| chr3_3 | exon | 14472120 | 14472363 | 14472120 | ID=Msa0443490-mRNA-1:exon:3201;Parent=Msa0443490-mRNA-1 |
| chr3_3 | exon | 14472761 | 14472898 | 14472761 | ID=Msa0443490-mRNA-1:exon:3202;Parent=Msa0443490-mRNA-1 |
| chr3_3 | exon | 14473560 | 14473624 | 14473560 | ID=Msa0443490-mRNA-1:exon:3203;Parent=Msa0443490-mRNA-1 |
| chr3_3 | exon | 14473755 | 14474033 | 14473755 | ID=Msa0443490-mRNA-1:exon:3204;Parent=Msa0443490-mRNA-1 |
| chr3_3 | exon | 14474139 | 14474370 | 14474139 | ID=Msa0443490-mRNA-1:exon:3205;Parent=Msa0443490-mRNA-1 |
| chr3_3 | exon | 14474472 | 14474615 | 14474472 | ID=Msa0443490-mRNA-1:exon:3206;Parent=Msa0443490-mRNA-1 |
| chr3_3 | exon | 14474700 | 14475036 | 14474700 | ID=Msa0443490-mRNA-1:exon:3207;Parent=Msa0443490-mRNA-1 |
| chr3_3 | five_prime_UTR | 14472120 | 14472234 | 14472120 | ID=Msa0443490-mRNA-1:five_prime_utr;Parent=Msa0443490-mRNA-1 |
| chr3_3 | CDS | 14472235 | 14472363 | 14472235 | ID=Msa0443490-mRNA-1:cds;Parent=Msa0443490-mRNA-1 |
| chr3_3 | CDS | 14472761 | 14472898 | 14472761 | ID=Msa0443490-mRNA-1:cds;Parent=Msa0443490-mRNA-1 |
| chr3_3 | CDS | 14473560 | 14473624 | 14473560 | ID=Msa0443490-mRNA-1:cds;Parent=Msa0443490-mRNA-1 |
| chr3_3 | CDS | 14473755 | 14474033 | 14473755 | ID=Msa0443490-mRNA-1:cds;Parent=Msa0443490-mRNA-1 |
| chr3_3 | CDS | 14474139 | 14474370 | 14474139 | ID=Msa0443490-mRNA-1:cds;Parent=Msa0443490-mRNA-1 |
| chr3_3 | CDS | 14474472 | 14474615 | 14474472 | ID=Msa0443490-mRNA-1:cds;Parent=Msa0443490-mRNA-1 |
| chr3_3 | CDS | 14474700 | 14474852 | 14474700 | ID=Msa0443490-mRNA-1:cds;Parent=Msa0443490-mRNA-1 |
| chr3_3 | three_prime_UTR | 14474853 | 14475036 | 14474853 | ID=Msa0443490-mRNA-1:three_prime_utr;Parent=Msa0443490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
