AlfalfaGEDB | Msa0444160

M. sativa cultivar zhongmu-4 / Msa0444160

KEGG: K12606|K13754
GO: GO:0000003 GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000932 GO:0000956 GO:0001932 GO:0001934 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005102 GO:0005154 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006357 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007044 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007166 GO:0007276 GO:0007283 GO:0007346 GO:0007548 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010562 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010646 GO:0010647 GO:0010648 GO:0010948 GO:0016043 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019220 GO:0019221 GO:0019222 GO:0019439 GO:0019899 GO:0019900 GO:0019904 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0030014 GO:0030015 GO:0030330 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031570 GO:0031571 GO:0031581 GO:0032268 GO:0032269 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033135 GO:0033138 GO:0033143 GO:0033144 GO:0033146 GO:0033147 GO:0033554 GO:0034097 GO:0034243 GO:0034248 GO:0034249 GO:0034329 GO:0034330 GO:0034641 GO:0034655 GO:0035556 GO:0035770 GO:0036464 GO:0042058 GO:0042221 GO:0042325 GO:0042327 GO:0042770 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045742 GO:0045786 GO:0045787 GO:0045893 GO:0045930 GO:0045935 GO:0045937 GO:0045944 GO:0046483 GO:0046700 GO:0046983 GO:0048232 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048609 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070851 GO:0070887 GO:0071156 GO:0071158 GO:0071310 GO:0071345 GO:0071704 GO:0071840 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0090304 GO:0097159 GO:1901184 GO:1901186 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902680 GO:1902806 GO:1902807 GO:1903047 GO:1903506 GO:1903508 GO:1990904 GO:2000045 GO:2000112 GO:2000113 GO:2000134 GO:2000325 GO:2000327 GO:2001141
PFAM: PF04078.16

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0444160	XP_003598636.1	83.389	301	13	2	1	264	1	301	7.73e-172	486

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0444160	sp\|Q6P819\|CNOT9_XENTR	44.828	261	110	1	40	266	28	288	1.06e-68	217

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0444160	Q2HW81	83.389	301	13	2	1	264	1	301	3.69e-172	486

TFs/TRs:

Gene ID	Type	Classification
Msa0444160	TR	Rcd1-like

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0444160	MtrunA17_Chr7g0224601	53.795	303	99	3	12	273	2	304	7.48e-93	276
Msa0444160	MtrunA17_Chr1g0177151	53.543	254	83	2	1	220	1	253	5.09e-90	268
Msa0444160	MtrunA17_Chr8g0392781	45.797	345	115	4	1	273	1	345	9.71e-89	268
Msa0444160	MtrunA17_Chr3g0099561	51.825	274	97	2	35	273	26	299	3.24e-85	257
Msa0444160	MtrunA17_Chr3g0083811	97.414	116	3	0	149	264	1	116	1.55e-76	228
Msa0444160	MtrunA17_Chr5g0444621	51.429	210	68	1	67	242	52	261	5.37e-63	199
Msa0444160	MtrunA17_Chr6g0477171	52.041	196	60	1	59	220	48	243	1.00e-59	190
Msa0444160	MtrunA17_Chr3g0083821	62.338	77	29	0	51	127	10	86	2.37e-26	100
Msa0444160	MtrunA17_Chr6g0477181	57.627	59	22	1	1	56	1	59	4.63e-12	61.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0444160	AT3G20800.1	48.951	286	112	1	22	273	26	311	2.67e-86	260
Msa0444160	AT5G12980.1	45.455	275	115	2	28	267	28	302	9.59e-77	236
Msa0444160	AT2G32550.2	28.980	245	124	5	50	248	67	307	3.20e-21	91.7
Msa0444160	AT2G32550.3	29.060	234	116	5	61	248	39	268	5.32e-21	90.5
Msa0444160	AT2G32550.1	28.241	216	105	5	79	248	2	213	4.13e-16	75.9

Find 44 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGGAACTTGGACCTTTATTA+TGG	0.221177	3_3:-17008674	Msa0444160:CDS
CTCGCTTATCTCAAAATTGC+AGG	0.298861	3_3:-17005716	Msa0444160:intron
AGAAATGAGATCCTTGTATC+AGG	0.301701	3_3:+17007666	None:intergenic
ATAGAAACCTATGACTTCTT+TGG	0.317203	3_3:+17006079	None:intergenic
CAATGTTCTTGCACTACTTC+AGG	0.367374	3_3:-17007896	Msa0444160:intron
TATATTAGACGATGATGGTT+TGG	0.376298	3_3:-17005859	Msa0444160:CDS
TTGGCATCTTTGAGCCTGTT+TGG	0.379455	3_3:+17005574	None:intergenic
CCAACAGTATTCCATAATAA+AGG	0.383147	3_3:+17008663	None:intergenic
GTTAACACCAAAGAAGTCAT+AGG	0.420089	3_3:-17006086	Msa0444160:CDS
TGTTGTTACATGAGAATGTT+GGG	0.422120	3_3:-17005086	Msa0444160:CDS
TCAGAGCACCAAGTTATTTG+AGG	0.428345	3_3:-17008694	Msa0444160:intron
TAACAACTTATCTTCCAAAC+AGG	0.438040	3_3:-17005588	Msa0444160:CDS
TTCTTTGTTGAGAGCGATTG+AGG	0.439462	3_3:+17009874	None:intergenic
GATTGTGAGGGAGAGAGATT+CGG	0.440290	3_3:+17007931	None:intergenic
ATTCTAACACCACTGATCAT+AGG	0.442748	3_3:-17009822	Msa0444160:CDS
AAAATTATATTAGACGATGA+TGG	0.467412	3_3:-17005864	Msa0444160:CDS
CACCCTCACCTCGTTTGTTG+AGG	0.472935	3_3:-17005758	Msa0444160:CDS
TGTTATTGAACTCAGCAATC+CGG	0.481393	3_3:-17009779	Msa0444160:CDS
ACCAAGTTATTTGAGGAACT+TGG	0.485648	3_3:-17008687	Msa0444160:CDS
AGATTCGGTGGTGAAAGAGT+AGG	0.488495	3_3:+17007946	None:intergenic
AACCGAGTTCCTTTAGAAGC+AGG	0.491153	3_3:-17005060	Msa0444160:CDS
CCTTTATTATGGAATACTGT+TGG	0.492405	3_3:-17008663	Msa0444160:CDS
CATCCTCTACCTGCTTCTAA+AGG	0.500981	3_3:+17005051	None:intergenic
GTTCCTTTAGAAGCAGGTAG+AGG	0.520910	3_3:-17005054	Msa0444160:CDS
TCCAAGTTCCTCAAATAACT+TGG	0.522228	3_3:+17008686	None:intergenic
TGGCATCTCACCCTGATACA+AGG	0.537570	3_3:-17007677	Msa0444160:CDS
CTGTTGTTACATGAGAATGT+TGG	0.540471	3_3:-17005087	Msa0444160:CDS
AGCCTCAACAAACGAGGTGA+GGG	0.559488	3_3:+17005756	None:intergenic
TGTTTGTCTAATATGCAAAA+CGG	0.565201	3_3:-17006032	Msa0444160:CDS
ACAAGGATCTCATTTCTCAA+TGG	0.566776	3_3:-17007660	Msa0444160:CDS
AAGCCTCAACAAACGAGGTG+AGG	0.569309	3_3:+17005755	None:intergenic
TGCTCTCTATGTGCTCTCCA+AGG	0.584461	3_3:-17009743	Msa0444160:intron
GAAATGAGATCCTTGTATCA+GGG	0.596244	3_3:+17007667	None:intergenic
CACACTCGAGTTGATTGTGA+GGG	0.603583	3_3:+17007919	None:intergenic
TAACACCACTGATCATAGGA+TGG	0.625981	3_3:-17009818	Msa0444160:CDS
CTCAACAAACGAGGTGAGGG+TGG	0.629401	3_3:+17005759	None:intergenic
TACCTGCTTCTAAAGGAACT+CGG	0.631809	3_3:+17005058	None:intergenic
GATTGCTGAGTTCAATAACA+AGG	0.649486	3_3:+17009782	None:intergenic
ATCAAAAGCCTCAACAAACG+AGG	0.660997	3_3:+17005750	None:intergenic
GCACACTCGAGTTGATTGTG+AGG	0.665692	3_3:+17007918	None:intergenic
GTAAGCCATCCTATGATCAG+TGG	0.669763	3_3:+17009813	None:intergenic
TCAGTGGTGTTAGAATCACC+AGG	0.685443	3_3:+17009829	None:intergenic
TGTGAGGGAGAGAGATTCGG+TGG	0.689243	3_3:+17007934	None:intergenic
GTTGTTACATGAGAATGTTG+GGG	0.746517	3_3:-17005085	Msa0444160:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTTTTATAATTGAATTGAA+AGG	-	chr3_3:17005404-17005423	Msa0444160:intron	10.0%
!!!	TTTTTATAATTGAATTGAAA+GGG	-	chr3_3:17005405-17005424	Msa0444160:intron	10.0%
!!	GAAAAATAAAAACATAAATT+TGG	+	chr3_3:17006652-17006671	None:intergenic	10.0%
!!!	GAATATTTTTTTTTTGTTTA+AGG	-	chr3_3:17006880-17006899	Msa0444160:intron	10.0%
!!!	CATATATATTTTTTACATTA+AGG	+	chr3_3:17007195-17007214	None:intergenic	10.0%
!!!	TAATTTTTTTTTGTAGTTTT+TGG	-	chr3_3:17007845-17007864	Msa0444160:intron	10.0%
!!!	TTAAAAGATATATATTTTAG+CGG	-	chr3_3:17008375-17008394	Msa0444160:intron	10.0%
!!	AGTTATAATAAATTAATTGT+CGG	-	chr3_3:17008500-17008519	Msa0444160:intron	10.0%
!!!	TACAATAATATCTAATTTTA+GGG	+	chr3_3:17008554-17008573	None:intergenic	10.0%
!!	ATTATATGAAAATTGATATT+AGG	-	chr3_3:17008652-17008671	Msa0444160:CDS	10.0%
!!	AATACTCTATAATAATAAAT+TGG	+	chr3_3:17008979-17008998	None:intergenic	10.0%
!!	ATATTAAATTATATCATATC+AGG	+	chr3_3:17009464-17009483	None:intergenic	10.0%
!!	ATTAGTTAATAATAAATCAA+TGG	+	chr3_3:17009598-17009617	None:intergenic	10.0%
!!!	GAACTTTTATACTAAAATTT+CGG	-	chr3_3:17006160-17006179	Msa0444160:intron	15.0%
!!	ATAGATTCATAATCTAAAAA+TGG	+	chr3_3:17006597-17006616	None:intergenic	15.0%
!!	AACTACAAAAAAAAATTACT+GGG	+	chr3_3:17007843-17007862	None:intergenic	15.0%
!!	AAACTACAAAAAAAAATTAC+TGG	+	chr3_3:17007844-17007863	None:intergenic	15.0%
!!!	ATATTTCTTTTTGTAGTTTT+TGG	+	chr3_3:17008044-17008063	None:intergenic	15.0%
!!!	CATACAGTTTTTTTTTTTTT+TGG	+	chr3_3:17008338-17008357	None:intergenic	15.0%
!!	CAAAAAAAAAAAAAACTGTA+TGG	-	chr3_3:17008336-17008355	Msa0444160:intron	15.0%
!!	GACAATTAATTTATTATAAC+TGG	+	chr3_3:17008501-17008520	None:intergenic	15.0%
!!!	CTACAATAATATCTAATTTT+AGG	+	chr3_3:17008555-17008574	None:intergenic	15.0%
!!	AAAATTGATATTAGGTATTT+GGG	-	chr3_3:17008660-17008679	Msa0444160:CDS	15.0%
!!	TTAAGATTAAAAGTTTAATC+AGG	+	chr3_3:17009312-17009331	None:intergenic	15.0%
!!!	TAAACTTTTAATCTTAAAAC+AGG	-	chr3_3:17009315-17009334	Msa0444160:intron	15.0%
!!!	AAACTTTTAATCTTAAAACA+GGG	-	chr3_3:17009316-17009335	Msa0444160:intron	15.0%
!!!	TTCATTTTTAATGTCTTTCA+TGG	-	chr3_3:17005247-17005266	Msa0444160:intron	20.0%
!!!	TCATTTTTAATGTCTTTCAT+GGG	-	chr3_3:17005248-17005267	Msa0444160:intron	20.0%
!!	TAATTGTTTCGTTATTGAAA+GGG	-	chr3_3:17005599-17005618	Msa0444160:CDS	20.0%
!!!	AAATTTTTTCAATGGTATTC+CGG	+	chr3_3:17005779-17005798	None:intergenic	20.0%
!!!	AAGCTTCTAAATTTTTTCAA+TGG	+	chr3_3:17005787-17005806	None:intergenic	20.0%
!!!	GATAGTGTGATTTTTTTTAA+TGG	-	chr3_3:17005866-17005885	Msa0444160:CDS	20.0%
!!!	AATCTTGATTTTACCATAAA+TGG	+	chr3_3:17005936-17005955	None:intergenic	20.0%
!!!	TTACCATGTTTGTTTTATTT+TGG	-	chr3_3:17006138-17006157	Msa0444160:intron	20.0%
!!!	ATTACATATTATTTTCTAGC+TGG	-	chr3_3:17006341-17006360	Msa0444160:intron	20.0%
!!!	AATTTAGTTTTTAAACCTCT+AGG	-	chr3_3:17006801-17006820	Msa0444160:intron	20.0%
!!!	ATTGATTTTCATGTATTTTG+GGG	+	chr3_3:17007132-17007151	None:intergenic	20.0%
!!!	GATTGATTTTCATGTATTTT+GGG	+	chr3_3:17007133-17007152	None:intergenic	20.0%
!!!	TGATTGATTTTCATGTATTT+TGG	+	chr3_3:17007134-17007153	None:intergenic	20.0%
!!!	AATGTTTTTTTTATAGTGTG+TGG	-	chr3_3:17007242-17007261	Msa0444160:intron	20.0%
!!	TATGGAGATATATAACTATT+TGG	-	chr3_3:17007436-17007455	Msa0444160:intron	20.0%
!!	AGGAATGGATATAAATATAA+AGG	+	chr3_3:17007666-17007685	None:intergenic	20.0%
!!!	TTTTGTTTTTGGCTAAAATA+TGG	-	chr3_3:17007780-17007799	Msa0444160:intron	20.0%
!!!	TCTGCAAAATATTTTGTTTT+TGG	-	chr3_3:17007973-17007992	Msa0444160:intron	20.0%
!!!	TATTTTGTTTTTGGAAATAG+TGG	-	chr3_3:17007982-17008001	Msa0444160:intron	20.0%
!!!	TCAAAAACAAAATATTTTGC+AGG	-	chr3_3:17008016-17008035	Msa0444160:intron	20.0%
!!!	CAAAAACAAAATATTTTGCA+GGG	-	chr3_3:17008017-17008036	Msa0444160:intron	20.0%
!!	ACTACAAAAAGAAATATTAC+AGG	-	chr3_3:17008047-17008066	Msa0444160:intron	20.0%
!!	CTACAAAAAGAAATATTACA+GGG	-	chr3_3:17008048-17008067	Msa0444160:intron	20.0%
!!	AAAAAACAAAGGCTAAAATA+TGG	+	chr3_3:17008112-17008131	None:intergenic	20.0%
!!!	AAATATATTTTCACATTGCA+AGG	+	chr3_3:17008201-17008220	None:intergenic	20.0%
!!	TTCACACAATAAACTAATTA+AGG	-	chr3_3:17008280-17008299	Msa0444160:intron	20.0%
!!!	CAATGTTAGTAAAAGTTTTA+AGG	+	chr3_3:17008472-17008491	None:intergenic	20.0%
!!!	CTTAAAACTTTTACTAACAT+TGG	-	chr3_3:17008470-17008489	Msa0444160:intron	20.0%
!!!	ATTGTCGGTAAAAATTTTAA+CGG	-	chr3_3:17008515-17008534	Msa0444160:intron	20.0%
!!	GAAAATTGATATTAGGTATT+TGG	-	chr3_3:17008659-17008678	Msa0444160:CDS	20.0%
!!	AAAATTATATTAGACGATGA+TGG	-	chr3_3:17009075-17009094	Msa0444160:intron	20.0%
!!	ATTGAATTCTCTCTTTATAA+AGG	+	chr3_3:17009757-17009776	None:intergenic	20.0%
!	TTCACAAGTAATACAAATCT+TGG	-	chr3_3:17005272-17005291	Msa0444160:intron	25.0%
!	ATGAGAACAAAGATGTTATT+AGG	+	chr3_3:17005374-17005393	None:intergenic	25.0%
!	CTTTCAATAACGAAACAATT+AGG	+	chr3_3:17005600-17005619	None:intergenic	25.0%
!	CTAATTGTTTCGTTATTGAA+AGG	-	chr3_3:17005598-17005617	Msa0444160:CDS	25.0%
!!!	CTTTTCAATTTTAATGCATC+TGG	-	chr3_3:17005715-17005734	Msa0444160:intron	25.0%
!!	ATCAATTTTTGTCGAAAACT+TGG	-	chr3_3:17005738-17005757	Msa0444160:CDS	25.0%
!!	CTTTACTTTGACTTTAAATG+AGG	+	chr3_3:17005818-17005837	None:intergenic	25.0%
!	AAAATCACACTATCAAATGT+CGG	+	chr3_3:17005860-17005879	None:intergenic	25.0%
!	GTTCCAAAATAAAACAAACA+TGG	+	chr3_3:17006144-17006163	None:intergenic	25.0%
!!!	TACTATTGCAGTATTTTTAC+AGG	-	chr3_3:17006299-17006318	Msa0444160:intron	25.0%
!	ATATTTGATGAAACACACAA+TGG	-	chr3_3:17006505-17006524	Msa0444160:intron	25.0%
!	AATTTGGAGAAAGATATACA+TGG	+	chr3_3:17006636-17006655	None:intergenic	25.0%
!!!	TTATTTTTCCAACTTTTACG+AGG	-	chr3_3:17006663-17006682	Msa0444160:intron	25.0%
!!	TATTTTTCCAACTTTTACGA+GGG	-	chr3_3:17006664-17006683	Msa0444160:intron	25.0%
!	ACTTAGAAAATATATGGTGA+TGG	-	chr3_3:17006689-17006708	Msa0444160:intron	25.0%
!!!	TTAGCTCAAGGATTTTTTTT+AGG	-	chr3_3:17006757-17006776	Msa0444160:intron	25.0%
!!!	TAGCTCAAGGATTTTTTTTA+GGG	-	chr3_3:17006758-17006777	Msa0444160:intron	25.0%
!!!	TTGTGCTGTTTTTTTTTTTC+AGG	-	chr3_3:17006953-17006972	Msa0444160:intron	25.0%
!!!	TTGATTTTCATGTATTTTGG+GGG	+	chr3_3:17007131-17007150	None:intergenic	25.0%
!	TTATTCTGAATTACAATCCA+AGG	-	chr3_3:17007334-17007353	Msa0444160:intron	25.0%
!!	GTTCTTTTGTGAAAATACTA+TGG	-	chr3_3:17007418-17007437	Msa0444160:intron	25.0%
!!!	TGAAAAGTGTTTTGAATAAG+AGG	-	chr3_3:17007495-17007514	Msa0444160:intron	25.0%
!!!	GAAAAGTGTTTTGAATAAGA+GGG	-	chr3_3:17007496-17007515	Msa0444160:intron	25.0%
!!!	CTTTCCCATTTTTAACATAA+TGG	+	chr3_3:17007571-17007590	None:intergenic	25.0%
!	GCTGCATATAATAACAAAAA+AGG	+	chr3_3:17007636-17007655	None:intergenic	25.0%
!!!	TTAACTTGCTTGTTGTTTTA+AGG	+	chr3_3:17007686-17007705	None:intergenic	25.0%
!	AAAAACAAAAGTTAGAAGGA+TGG	+	chr3_3:17007770-17007789	None:intergenic	25.0%
!!!	ATCCTTCTAACTTTTGTTTT+TGG	-	chr3_3:17007769-17007788	Msa0444160:intron	25.0%
!!	AGAATATTTTTCTACCGAAT+AGG	+	chr3_3:17007954-17007973	None:intergenic	25.0%
!	TAAGGATTCTCTAAACTTTA+TGG	-	chr3_3:17008298-17008317	Msa0444160:intron	25.0%
!!!	AAGTTTTAAGGACAGTTATA+AGG	+	chr3_3:17008460-17008479	None:intergenic	25.0%
!	CAAAACGAAATAAATAAGCA+TGG	+	chr3_3:17008814-17008833	None:intergenic	25.0%
!!	TGCTTATTTATTTCGTTTTG+TGG	-	chr3_3:17008814-17008833	Msa0444160:intron	25.0%
!	TGTTTGTCTAATATGCAAAA+CGG	-	chr3_3:17008907-17008926	Msa0444160:intron	25.0%
!	TTCAACAATTCTTAAGATCA+TGG	+	chr3_3:17009263-17009282	None:intergenic	25.0%
!	ACGAAAAAAATTGATGAGAT+TGG	+	chr3_3:17009387-17009406	None:intergenic	25.0%
!	ATATTACAAGACATGCTATT+AGG	-	chr3_3:17009514-17009533	Msa0444160:intron	25.0%
!	TATTACAAGACATGCTATTA+GGG	-	chr3_3:17009515-17009534	Msa0444160:intron	25.0%
!!!	TAAGTTTTGTGACACATTTA+TGG	-	chr3_3:17009654-17009673	Msa0444160:intron	25.0%
!!	CATTTATGGTATTTTCAAAG+TGG	-	chr3_3:17009668-17009687	Msa0444160:intron	25.0%
!	CTAGATATTGTTTCAATTTC+AGG	-	chr3_3:17009803-17009822	Msa0444160:CDS	25.0%
	AGATAGATATGTAAGAACCT+TGG	+	chr3_3:17005216-17005235	None:intergenic	30.0%
	ACAAGTAATACAAATCTTGG+AGG	-	chr3_3:17005275-17005294	Msa0444160:intron	30.0%
	TGTTATTAGGTCTAGCAAAA+GGG	+	chr3_3:17005361-17005380	None:intergenic	30.0%
	ATGTTATTAGGTCTAGCAAA+AGG	+	chr3_3:17005362-17005381	None:intergenic	30.0%
!	TCTCCAGAATAATTTGTCTT+TGG	-	chr3_3:17005552-17005571	Msa0444160:intron	30.0%
	TTCACTGTTTAGTGTATCAT+GGG	-	chr3_3:17005622-17005641	Msa0444160:intron	30.0%
	TTTGTCGAAAACTTGGTATT+CGG	-	chr3_3:17005745-17005764	Msa0444160:CDS	30.0%
	CCAACAGTATTCCATAATAA+AGG	+	chr3_3:17006279-17006298	None:intergenic	30.0%
	CCTTTATTATGGAATACTGT+TGG	-	chr3_3:17006276-17006295	Msa0444160:intron	30.0%
	ATGAAACACACAATGGTATT+GGG	-	chr3_3:17006512-17006531	Msa0444160:intron	30.0%
	TGAAATGATGATTGTTCTGA+AGG	+	chr3_3:17006574-17006593	None:intergenic	30.0%
	AGGGAGACTTAGAAAATATA+TGG	-	chr3_3:17006683-17006702	Msa0444160:intron	30.0%
	TTGAATAAGAGGGATGAATT+TGG	-	chr3_3:17007506-17007525	Msa0444160:intron	30.0%
	CAGGCCATTATGTTAAAAAT+GGG	-	chr3_3:17007564-17007583	Msa0444160:intron	30.0%
!!!	TTGCTTGTTGTTTTAAGGAA+TGG	+	chr3_3:17007681-17007700	None:intergenic	30.0%
	TAACACAGTTTGAGAATTTG+AGG	-	chr3_3:17007703-17007722	Msa0444160:intron	30.0%
	AACACAGTTTGAGAATTTGA+GGG	-	chr3_3:17007704-17007723	Msa0444160:intron	30.0%
	AGCCAAAAACAAAAGTTAGA+AGG	+	chr3_3:17007774-17007793	None:intergenic	30.0%
	CAAAACGAGACATATTTACA+GGG	+	chr3_3:17007813-17007832	None:intergenic	30.0%
	ACAAAACGAGACATATTTAC+AGG	+	chr3_3:17007814-17007833	None:intergenic	30.0%
	ACATGATGATTGAACCTATT+CGG	-	chr3_3:17007937-17007956	Msa0444160:CDS	30.0%
!!!	TTTGTTTTTGGAAATAGTGG+AGG	-	chr3_3:17007985-17008004	Msa0444160:intron	30.0%
!!!	TTGTTTTTGGAAATAGTGGA+GGG	-	chr3_3:17007986-17008005	Msa0444160:intron	30.0%
	TCAGCTGCATTAAAAAACAA+AGG	+	chr3_3:17008123-17008142	None:intergenic	30.0%
	TGAACTAATCCTAACAAGTT+GGG	+	chr3_3:17008695-17008714	None:intergenic	30.0%
	ATGAACTAATCCTAACAAGT+TGG	+	chr3_3:17008696-17008715	None:intergenic	30.0%
	TTGTGGTATTTGATATTCAC+AGG	-	chr3_3:17008831-17008850	Msa0444160:intron	30.0%
	ATAGAAACCTATGACTTCTT+TGG	+	chr3_3:17008863-17008882	None:intergenic	30.0%
	GATATACAACTTTCATTAGC+AGG	+	chr3_3:17009027-17009046	None:intergenic	30.0%
	ATTATAAATGTTGCAACCTG+TGG	+	chr3_3:17009051-17009070	None:intergenic	30.0%
!	TATATTAGACGATGATGGTT+TGG	-	chr3_3:17009080-17009099	Msa0444160:intron	30.0%
!!!	GCTACAACAGAGAATTTTTT+TGG	-	chr3_3:17009114-17009133	Msa0444160:intron	30.0%
	TAACAACTTATCTTCCAAAC+AGG	-	chr3_3:17009351-17009370	Msa0444160:intron	30.0%
	GTATGATACACACATTCAAT+AGG	+	chr3_3:17009559-17009578	None:intergenic	30.0%
	TGTCACAAAACTTACTAAAG+AGG	+	chr3_3:17009648-17009667	None:intergenic	30.0%
	TCAAAGTGGATACTAACTAT+AGG	-	chr3_3:17009682-17009701	Msa0444160:intron	30.0%
	TGTTGTTACATGAGAATGTT+GGG	-	chr3_3:17009853-17009872	Msa0444160:CDS	30.0%
	ATTCTAACACCACTGATCAT+AGG	-	chr3_3:17005117-17005136	Msa0444160:CDS	35.0%
	GATTGCTGAGTTCAATAACA+AGG	+	chr3_3:17005160-17005179	None:intergenic	35.0%
	TGTTATTGAACTCAGCAATC+CGG	-	chr3_3:17005160-17005179	Msa0444160:intron	35.0%
!!!	AGAGCATTTTCTCTAAGATC+CGG	+	chr3_3:17005182-17005201	None:intergenic	35.0%
!	AAAGGGTTTAATGTTGGTAG+AGG	+	chr3_3:17005344-17005363	None:intergenic	35.0%
	CTAGCAAAAGGGTTTAATGT+TGG	+	chr3_3:17005350-17005369	None:intergenic	35.0%
	TGTTTACGCTTCACTTCTTA+GGG	-	chr3_3:17005443-17005462	Msa0444160:intron	35.0%
	GGAAATGAGACCTGATAATT+TGG	-	chr3_3:17005465-17005484	Msa0444160:intron	35.0%
	TCTGGTAGGTCAATAAAATC+TGG	-	chr3_3:17005494-17005513	Msa0444160:intron	35.0%
	AGAACCTAGGTTCAATTTCT+GGG	+	chr3_3:17005535-17005554	None:intergenic	35.0%
!	CAAATTATTCTGGAGAACCT+AGG	+	chr3_3:17005548-17005567	None:intergenic	35.0%
	CCACCAAAGACAAATTATTC+TGG	+	chr3_3:17005558-17005577	None:intergenic	35.0%
!	CCAGAATAATTTGTCTTTGG+TGG	-	chr3_3:17005555-17005574	Msa0444160:CDS	35.0%
	GTTCACTGTTTAGTGTATCA+TGG	-	chr3_3:17005621-17005640	Msa0444160:intron	35.0%
	AAAACTTGGTATTCGGTCAT+AGG	-	chr3_3:17005752-17005771	Msa0444160:CDS	35.0%
	GACGACATCTAATCCATTTA+TGG	-	chr3_3:17005920-17005939	Msa0444160:intron	35.0%
	AATCAAGATTACTATCGCAC+AGG	-	chr3_3:17005946-17005965	Msa0444160:intron	35.0%
	ACCAAGTTATTTGAGGAACT+TGG	-	chr3_3:17006252-17006271	Msa0444160:intron	35.0%
	TCCAAGTTCCTCAAATAACT+TGG	+	chr3_3:17006256-17006275	None:intergenic	35.0%
	AGGAACTTGGACCTTTATTA+TGG	-	chr3_3:17006265-17006284	Msa0444160:intron	35.0%
	TTGTGCATGTATCTTACTTG+TGG	-	chr3_3:17006464-17006483	Msa0444160:intron	35.0%
	GATGAAACACACAATGGTAT+TGG	-	chr3_3:17006511-17006530	Msa0444160:intron	35.0%
	GAAGGATTGTAATACGACAA+AGG	+	chr3_3:17006556-17006575	None:intergenic	35.0%
	TGGAGAAAGATATACATGGT+AGG	+	chr3_3:17006632-17006651	None:intergenic	35.0%
	TTTCAAGAGATGTTAGCTCA+AGG	-	chr3_3:17006745-17006764	Msa0444160:intron	35.0%
	GATTTGAACTTCTTTCCTAG+AGG	+	chr3_3:17006819-17006838	None:intergenic	35.0%
!!	GGTCATTTTACAGTTGTTTG+AGG	+	chr3_3:17006843-17006862	None:intergenic	35.0%
	ATTCATAAGAGTCGCACTAA+TGG	+	chr3_3:17006864-17006883	None:intergenic	35.0%
	GAAATGAGATCCTTGTATCA+GGG	+	chr3_3:17007275-17007294	None:intergenic	35.0%
	AGAAATGAGATCCTTGTATC+AGG	+	chr3_3:17007276-17007295	None:intergenic	35.0%
	ACAAGGATCTCATTTCTCAA+TGG	-	chr3_3:17007279-17007298	Msa0444160:intron	35.0%
!!	CAACTTGTTACATACAACCT+TGG	+	chr3_3:17007354-17007373	None:intergenic	35.0%
	AAGTTATTGCAACCAAAAGC+TGG	+	chr3_3:17007543-17007562	None:intergenic	35.0%
!!	TTTTGGTTGCAATAACTTGC+AGG	-	chr3_3:17007545-17007564	Msa0444160:intron	35.0%
	GCAGGCCATTATGTTAAAAA+TGG	-	chr3_3:17007563-17007582	Msa0444160:intron	35.0%
!!!	AATATGCCTCGTTTTGGTTT+TGG	-	chr3_3:17007876-17007895	Msa0444160:intron	35.0%
	GTGCAAATCATCACAAAAGT+GGG	+	chr3_3:17007910-17007929	None:intergenic	35.0%
	TGTGCAAATCATCACAAAAG+TGG	+	chr3_3:17007911-17007930	None:intergenic	35.0%
	CAAAACGAGACATATTTGCA+GGG	-	chr3_3:17008079-17008098	Msa0444160:intron	35.0%
	AGGACAGTTATAAGGAATGT+TGG	+	chr3_3:17008452-17008471	None:intergenic	35.0%
!	ACTTACAAACCCAACTTGTT+AGG	-	chr3_3:17008683-17008702	Msa0444160:CDS	35.0%
	TTAGTTCATCTACATCACGA+AGG	-	chr3_3:17008707-17008726	Msa0444160:intron	35.0%
	TAGTTCATCTACATCACGAA+GGG	-	chr3_3:17008708-17008727	Msa0444160:intron	35.0%
	GTTAACACCAAAGAAGTCAT+AGG	-	chr3_3:17008853-17008872	Msa0444160:intron	35.0%
!!	GCAGGTATTGGTAACAAAAA+TGG	+	chr3_3:17009009-17009028	None:intergenic	35.0%
	CAACTTTCATTAGCAGGTAT+TGG	+	chr3_3:17009021-17009040	None:intergenic	35.0%
	TGAAAGTTGTATATCTCCAC+AGG	-	chr3_3:17009032-17009051	Msa0444160:intron	35.0%
!!!	TCGAGTTTTGAACATGATGT+TGG	-	chr3_3:17009143-17009162	Msa0444160:intron	35.0%
	CTTATCTCAAAATTGCAGGT+TGG	-	chr3_3:17009227-17009246	Msa0444160:intron	35.0%
	AGGATGATCCAAAAACTATG+AGG	-	chr3_3:17009823-17009842	Msa0444160:CDS	35.0%
	TGATCCAAAAACTATGAGGT+TGG	-	chr3_3:17009827-17009846	Msa0444160:CDS	35.0%
!	AGTACCAACCTCATAGTTTT+TGG	+	chr3_3:17009834-17009853	None:intergenic	35.0%
	CTGTTGTTACATGAGAATGT+TGG	-	chr3_3:17009852-17009871	Msa0444160:CDS	35.0%
	GTTGTTACATGAGAATGTTG+GGG	-	chr3_3:17009854-17009873	Msa0444160:CDS	35.0%
	TTCTTTGTTGAGAGCGATTG+AGG	+	chr3_3:17005068-17005087	None:intergenic	40.0%
!	GCATCGTTTATAGCTTTTCC+TGG	-	chr3_3:17005092-17005111	Msa0444160:CDS	40.0%
	TAACACCACTGATCATAGGA+TGG	-	chr3_3:17005121-17005140	Msa0444160:intron	40.0%
	GTGTTTACGCTTCACTTCTT+AGG	-	chr3_3:17005442-17005461	Msa0444160:intron	40.0%
	GTTTACGCTTCACTTCTTAG+GGG	-	chr3_3:17005444-17005463	Msa0444160:intron	40.0%
	CAGACGAACTCCAAATTATC+AGG	+	chr3_3:17005478-17005497	None:intergenic	40.0%
!	CTGATAATTTGGAGTTCGTC+TGG	-	chr3_3:17005476-17005495	Msa0444160:intron	40.0%
!	TAATTTGGAGTTCGTCTGGT+AGG	-	chr3_3:17005480-17005499	Msa0444160:intron	40.0%
	GAGAACCTAGGTTCAATTTC+TGG	+	chr3_3:17005536-17005555	None:intergenic	40.0%
!	ACGAAACAATTAGGCTCTAG+TGG	+	chr3_3:17005591-17005610	None:intergenic	40.0%
	ATCACACTATCAAATGTCGG+TGG	+	chr3_3:17005857-17005876	None:intergenic	40.0%
!	TCAGAGCACCAAGTTATTTG+AGG	-	chr3_3:17006245-17006264	Msa0444160:intron	40.0%
	TAAGTCTCCCTCGTAAAAGT+TGG	+	chr3_3:17006674-17006693	None:intergenic	40.0%
	CAATGTTCTTGCACTACTTC+AGG	-	chr3_3:17007043-17007062	Msa0444160:intron	40.0%
!	GATTCTCTATGACCAGCTTT+TGG	-	chr3_3:17007528-17007547	Msa0444160:intron	40.0%
!	AATTTGAGGGTTGCTAGTCT+TGG	-	chr3_3:17007717-17007736	Msa0444160:intron	40.0%
	CAAAACGAGGCATATTTGCA+GGG	+	chr3_3:17007872-17007891	None:intergenic	40.0%
!	TTTGTGATGATTTGCACACG+TGG	-	chr3_3:17007913-17007932	Msa0444160:CDS	40.0%
!	CCTGCAAATATGTCTCGTTT+TGG	+	chr3_3:17008081-17008100	None:intergenic	40.0%
	CCAAAACGAGACATATTTGC+AGG	-	chr3_3:17008078-17008097	Msa0444160:intron	40.0%
	ATCAAAAGCCTCAACAAACG+AGG	+	chr3_3:17009192-17009211	None:intergenic	40.0%
	CTCGCTTATCTCAAAATTGC+AGG	-	chr3_3:17009223-17009242	Msa0444160:intron	40.0%
	TACAAGACATGCTATTAGGG+TGG	-	chr3_3:17009518-17009537	Msa0444160:intron	40.0%
!	ATGCTATTAGGGTGGCTTTT+AGG	-	chr3_3:17009526-17009545	Msa0444160:intron	40.0%
!	TACCTGCTTCTAAAGGAACT+CGG	+	chr3_3:17009884-17009903	None:intergenic	40.0%
!	TCAGTGGTGTTAGAATCACC+AGG	+	chr3_3:17005113-17005132	None:intergenic	45.0%
	GTAAGCCATCCTATGATCAG+TGG	+	chr3_3:17005129-17005148	None:intergenic	45.0%
	TCCACCCAGAAATTGAACCT+AGG	-	chr3_3:17005528-17005547	Msa0444160:intron	45.0%
!	ACCTAGGTTCAATTTCTGGG+TGG	+	chr3_3:17005532-17005551	None:intergenic	45.0%
	TTGGTATTCGGTCATAGGAC+CGG	-	chr3_3:17005757-17005776	Msa0444160:CDS	45.0%
!!	AGATTCGGTGGTGAAAGAGT+AGG	+	chr3_3:17006996-17007015	None:intergenic	45.0%
	GATTGTGAGGGAGAGAGATT+CGG	+	chr3_3:17007011-17007030	None:intergenic	45.0%
!!	CACACTCGAGTTGATTGTGA+GGG	+	chr3_3:17007023-17007042	None:intergenic	45.0%
!!	GTTGCTAGTCTTGGAGTCAT+TGG	-	chr3_3:17007726-17007745	Msa0444160:intron	45.0%
	CCAAAACGAGGCATATTTGC+AGG	+	chr3_3:17007873-17007892	None:intergenic	45.0%
!	CCTGCAAATATGCCTCGTTT+TGG	-	chr3_3:17007870-17007889	Msa0444160:intron	45.0%
	CAAGGACCAAAACCAAAACG+AGG	+	chr3_3:17007885-17007904	None:intergenic	45.0%
!!!	CTCGTTTTGGTTTTGGTCCT+TGG	-	chr3_3:17007883-17007902	Msa0444160:intron	45.0%
	TCATCACAAAAGTGGGACCA+AGG	+	chr3_3:17007903-17007922	None:intergenic	45.0%
	TTGGCATCTTTGAGCCTGTT+TGG	+	chr3_3:17009368-17009387	None:intergenic	45.0%
!	AACCGAGTTCCTTTAGAAGC+AGG	-	chr3_3:17009879-17009898	Msa0444160:CDS	45.0%
!	GTTCCTTTAGAAGCAGGTAG+AGG	-	chr3_3:17009885-17009904	Msa0444160:CDS	45.0%
	CATCCTCTACCTGCTTCTAA+AGG	+	chr3_3:17009891-17009910	None:intergenic	45.0%
	TGCTCTCTATGTGCTCTCCA+AGG	-	chr3_3:17005196-17005215	Msa0444160:intron	50.0%
!!	GCACACTCGAGTTGATTGTG+AGG	+	chr3_3:17007024-17007043	None:intergenic	50.0%
	TGGCATCTCACCCTGATACA+AGG	-	chr3_3:17007262-17007281	Msa0444160:intron	50.0%
!!	GCTAGTCTTGGAGTCATTGG+TGG	-	chr3_3:17007729-17007748	Msa0444160:intron	50.0%
!	AGTCATTGGTGGCTCGATGA+AGG	-	chr3_3:17007740-17007759	Msa0444160:intron	50.0%
	AGCCTCAACAAACGAGGTGA+GGG	+	chr3_3:17009186-17009205	None:intergenic	50.0%
	AAGCCTCAACAAACGAGGTG+AGG	+	chr3_3:17009187-17009206	None:intergenic	50.0%
	TGTGAGGGAGAGAGATTCGG+TGG	+	chr3_3:17007008-17007027	None:intergenic	55.0%
	CTCAACAAACGAGGTGAGGG+TGG	+	chr3_3:17009183-17009202	None:intergenic	55.0%
!	CACCCTCACCTCGTTTGTTG+AGG	-	chr3_3:17009181-17009200	Msa0444160:intron	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	17005050	17009911	17005050	ID=Msa0444160;Name=Msa0444160
chr3_3	mRNA	17005050	17009911	17005050	ID=Msa0444160-mRNA-1;Parent=Msa0444160;Name=Msa0444160-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0\|0\|0\|0.87\|0.85\|0.87\|8\|0\|273
chr3_3	exon	17009744	17009911	17009744	ID=Msa0444160-mRNA-1:exon:3556;Parent=Msa0444160-mRNA-1
chr3_3	exon	17008641	17008712	17008641	ID=Msa0444160-mRNA-1:exon:3555;Parent=Msa0444160-mRNA-1
chr3_3	exon	17007897	17007986	17007897	ID=Msa0444160-mRNA-1:exon:3554;Parent=Msa0444160-mRNA-1
chr3_3	exon	17007656	17007703	17007656	ID=Msa0444160-mRNA-1:exon:3553;Parent=Msa0444160-mRNA-1
chr3_3	exon	17006013	17006108	17006013	ID=Msa0444160-mRNA-1:exon:3552;Parent=Msa0444160-mRNA-1
chr3_3	exon	17005717	17005907	17005717	ID=Msa0444160-mRNA-1:exon:3551;Parent=Msa0444160-mRNA-1
chr3_3	exon	17005555	17005624	17005555	ID=Msa0444160-mRNA-1:exon:3550;Parent=Msa0444160-mRNA-1
chr3_3	exon	17005050	17005136	17005050	ID=Msa0444160-mRNA-1:exon:3549;Parent=Msa0444160-mRNA-1
chr3_3	CDS	17009744	17009911	17009744	ID=Msa0444160-mRNA-1:cds;Parent=Msa0444160-mRNA-1
chr3_3	CDS	17008641	17008712	17008641	ID=Msa0444160-mRNA-1:cds;Parent=Msa0444160-mRNA-1
chr3_3	CDS	17007897	17007986	17007897	ID=Msa0444160-mRNA-1:cds;Parent=Msa0444160-mRNA-1
chr3_3	CDS	17007656	17007703	17007656	ID=Msa0444160-mRNA-1:cds;Parent=Msa0444160-mRNA-1
chr3_3	CDS	17006013	17006108	17006013	ID=Msa0444160-mRNA-1:cds;Parent=Msa0444160-mRNA-1
chr3_3	CDS	17005717	17005907	17005717	ID=Msa0444160-mRNA-1:cds;Parent=Msa0444160-mRNA-1
chr3_3	CDS	17005555	17005624	17005555	ID=Msa0444160-mRNA-1:cds;Parent=Msa0444160-mRNA-1
chr3_3	CDS	17005050	17005136	17005050	ID=Msa0444160-mRNA-1:cds;Parent=Msa0444160-mRNA-1

Gene Sequence

>Msa0444160

ATGGCACACTTTACTCCTCAATCGCTCTCAACAAAGAACAATGCATCGTTTATAGCTTTTCCTGGTGATTCTAACACCACTGATCATAGGATGGCTTACATGCAAAGCCTTGTTATTGAACTCAGCAATCCGGATCTTAGAGAAAATGCTCTCTATGTGCTCTCCAAGAGCACCAAGTTATTTGAGGAACTTGGACCTTTATTATGGAATACTGTTGGTACTATTGCAGTATTTTTACAGGAAATACTTTCAATATATCCTACTCTTTCACCACCGAATCTCTCTCCCTCACAATCAACTCGAGTGTGCAATGTTCTTGCACTACTTCAGTGTGTGGCATCTCACCCTGATACAAGGATCTCATTTCTCAATGGTAATGTTAACACCAAAGAAGTCATAGGTTTCTATCTCTCAAGTGAGATAATTTCACTATGTTTGTCTAATATGCAAAACGGCAATGAATTGACAAAAAATGTTGCAACATTTATAATTCTGAAAATTATATTAGACGATGATGGTTTGGCTCGTGTTTGTGCTACAACAGAGAATTTTTTTGGAGTATGTCGAGTTTTGAACATGATGTTGGAAGATCTTGAGAATCCACCCTCACCTCGTTTGTTGAGGCTTTTGATTTCATGTTATTCTCGCTTATCTCAAAATTGCAGGGCTAGAGTTGCATTAACAACTTATCTTCCAAACAGGCTCAAAGATGCCAATCTCATCAATTTTTTTCGTGATGATCCAAAAACTATGAGGTTGGTACTGTTGTTACATGAGAATGTTGGGGTGAACCGAGTTCCTTTAGAAGCAGGTAGAGGATGA

Protein sequence

>Msa0444160

MAHFTPQSLSTKNNASFIAFPGDSNTTDHRMAYMQSLVIELSNPDLRENALYVLSKSTKLFEELGPLLWNTVGTIAVFLQEILSIYPTLSPPNLSPSQSTRVCNVLALLQCVASHPDTRISFLNGNVNTKEVIGFYLSSEIISLCLSNMQNGNELTKNVATFIILKIILDDDGLARVCATTENFFGVCRVLNMMLEDLENPPSPRLLRLLISCYSRLSQNCRARVALTTYLPNRLKDANLINFFRDDPKTMRLVLLLHENVGVNRVPLEAGRG*