Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0445180 | XP_003598874.1 | 93.793 | 435 | 27 | 0 | 9 | 443 | 4 | 438 | 0.0 | 848 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0445180 | sp|G7J1L1|TF80_MEDTR | 93.793 | 435 | 27 | 0 | 9 | 443 | 4 | 438 | 0.0 | 848 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0445180 | A0A2Z6MW56 | 88.009 | 442 | 50 | 1 | 6 | 444 | 13 | 454 | 0.0 | 802 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0445180 | TF | GRAS |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0445180 | MtrunA17_Chr3g0085681 | 93.793 | 435 | 27 | 0 | 9 | 443 | 4 | 438 | 0.0 | 848 |
| Msa0445180 | MtrunA17_Chr3g0085361 | 91.168 | 351 | 30 | 1 | 93 | 443 | 3 | 352 | 0.0 | 658 |
| Msa0445180 | MtrunA17_Chr5g0396491 | 52.222 | 450 | 203 | 5 | 7 | 444 | 32 | 481 | 7.03e-160 | 460 |
| Msa0445180 | MtrunA17_Chr4g0038851 | 47.768 | 448 | 224 | 4 | 7 | 444 | 25 | 472 | 5.33e-151 | 437 |
| Msa0445180 | MtrunA17_Chr7g0224271 | 28.837 | 430 | 230 | 6 | 31 | 441 | 301 | 673 | 8.03e-56 | 196 |
| Msa0445180 | MtrunA17_Chr1g0159461 | 28.777 | 417 | 241 | 4 | 31 | 441 | 226 | 592 | 8.28e-55 | 192 |
| Msa0445180 | MtrunA17_Chr5g0447691 | 29.356 | 419 | 236 | 6 | 31 | 441 | 178 | 544 | 1.71e-54 | 190 |
| Msa0445180 | MtrunA17_Chr8g0376381 | 27.896 | 423 | 225 | 10 | 31 | 442 | 170 | 523 | 3.67e-52 | 183 |
| Msa0445180 | MtrunA17_Chr5g0445331 | 27.208 | 419 | 249 | 6 | 31 | 441 | 162 | 532 | 6.62e-51 | 180 |
| Msa0445180 | MtrunA17_Chr3g0125811 | 27.358 | 424 | 252 | 4 | 24 | 441 | 197 | 570 | 3.95e-50 | 179 |
| Msa0445180 | MtrunA17_Chr2g0319091 | 29.496 | 417 | 236 | 7 | 31 | 440 | 213 | 578 | 5.45e-50 | 178 |
| Msa0445180 | MtrunA17_Chr2g0306641 | 29.048 | 420 | 231 | 10 | 31 | 441 | 126 | 487 | 3.84e-48 | 172 |
| Msa0445180 | MtrunA17_Chr3g0101141 | 26.619 | 417 | 250 | 6 | 31 | 441 | 176 | 542 | 1.39e-46 | 168 |
| Msa0445180 | MtrunA17_Chr7g0245601 | 27.711 | 415 | 231 | 8 | 33 | 441 | 441 | 792 | 4.57e-46 | 170 |
| Msa0445180 | MtrunA17_Chr4g0076091 | 25.899 | 417 | 252 | 5 | 31 | 440 | 176 | 542 | 1.38e-43 | 160 |
| Msa0445180 | MtrunA17_Chr4g0057291 | 26.128 | 421 | 248 | 8 | 31 | 440 | 293 | 661 | 2.97e-42 | 158 |
| Msa0445180 | MtrunA17_Chr2g0290241 | 25.172 | 437 | 263 | 7 | 19 | 441 | 39 | 425 | 1.40e-40 | 150 |
| Msa0445180 | MtrunA17_Chr4g0031721 | 27.338 | 417 | 246 | 6 | 31 | 440 | 317 | 683 | 1.69e-40 | 153 |
| Msa0445180 | MtrunA17_Chr4g0031741 | 27.990 | 418 | 240 | 8 | 31 | 440 | 285 | 649 | 3.57e-40 | 152 |
| Msa0445180 | MtrunA17_Chr2g0328391 | 25.120 | 418 | 256 | 6 | 31 | 440 | 300 | 668 | 9.20e-40 | 151 |
| Msa0445180 | MtrunA17_Chr8g0357601 | 27.465 | 426 | 238 | 10 | 31 | 441 | 183 | 552 | 2.09e-39 | 149 |
| Msa0445180 | MtrunA17_Chr2g0328411 | 27.512 | 418 | 241 | 8 | 31 | 440 | 290 | 653 | 9.99e-39 | 148 |
| Msa0445180 | MtrunA17_Chr4g0057891 | 25.059 | 423 | 253 | 7 | 31 | 441 | 150 | 520 | 1.52e-37 | 143 |
| Msa0445180 | MtrunA17_Chr7g0238891 | 26.316 | 418 | 251 | 6 | 31 | 441 | 373 | 740 | 2.80e-37 | 144 |
| Msa0445180 | MtrunA17_Chr2g0328381 | 24.821 | 419 | 252 | 8 | 31 | 440 | 276 | 640 | 4.77e-37 | 143 |
| Msa0445180 | MtrunA17_Chr2g0328341 | 25.783 | 415 | 253 | 7 | 31 | 440 | 273 | 637 | 9.47e-37 | 142 |
| Msa0445180 | MtrunA17_Chr4g0031711 | 25.532 | 423 | 250 | 9 | 31 | 440 | 362 | 732 | 1.77e-36 | 142 |
| Msa0445180 | MtrunA17_Chr2g0328431 | 26.859 | 417 | 245 | 7 | 31 | 440 | 290 | 653 | 3.35e-36 | 141 |
| Msa0445180 | MtrunA17_Chr4g0031701 | 24.700 | 417 | 253 | 9 | 31 | 436 | 255 | 621 | 1.76e-34 | 135 |
| Msa0445180 | MtrunA17_Chr4g0038761 | 27.427 | 412 | 240 | 10 | 33 | 441 | 87 | 442 | 1.94e-34 | 133 |
| Msa0445180 | MtrunA17_Chr4g0031731 | 24.519 | 416 | 255 | 8 | 31 | 436 | 255 | 621 | 9.20e-34 | 134 |
| Msa0445180 | MtrunA17_Chr2g0294461 | 27.907 | 430 | 238 | 10 | 31 | 442 | 211 | 586 | 1.02e-33 | 133 |
| Msa0445180 | MtrunA17_Chr2g0294471 | 26.698 | 427 | 244 | 8 | 31 | 442 | 205 | 577 | 3.34e-33 | 131 |
| Msa0445180 | MtrunA17_Chr4g0039661 | 26.636 | 428 | 242 | 11 | 26 | 441 | 188 | 555 | 9.69e-33 | 130 |
| Msa0445180 | MtrunA17_Chr1g0183641 | 25.587 | 426 | 250 | 10 | 23 | 443 | 116 | 479 | 2.13e-32 | 128 |
| Msa0445180 | MtrunA17_Chr2g0328401 | 25.064 | 391 | 234 | 6 | 31 | 415 | 291 | 628 | 9.53e-31 | 125 |
| Msa0445180 | MtrunA17_Chr5g0401131 | 22.406 | 424 | 268 | 8 | 31 | 441 | 115 | 490 | 7.74e-28 | 115 |
| Msa0445180 | MtrunA17_Chr2g0328361 | 24.099 | 444 | 249 | 11 | 6 | 440 | 250 | 614 | 8.08e-28 | 116 |
| Msa0445180 | MtrunA17_Chr3g0087711 | 87.931 | 58 | 7 | 0 | 181 | 238 | 1 | 58 | 1.77e-27 | 103 |
| Msa0445180 | MtrunA17_Chr3g0110971 | 30.144 | 209 | 132 | 4 | 31 | 234 | 220 | 419 | 3.31e-26 | 111 |
| Msa0445180 | MtrunA17_Chr3g0110971 | 36.025 | 161 | 89 | 3 | 296 | 442 | 428 | 588 | 1.31e-24 | 106 |
| Msa0445180 | MtrunA17_Chr7g0270031 | 24.051 | 395 | 236 | 9 | 57 | 442 | 216 | 555 | 1.62e-24 | 106 |
| Msa0445180 | MtrunA17_Chr4g0053901 | 22.779 | 439 | 279 | 9 | 31 | 440 | 60 | 467 | 3.82e-23 | 101 |
| Msa0445180 | MtrunA17_Chr3g0114841 | 22.870 | 446 | 262 | 13 | 21 | 440 | 110 | 499 | 9.10e-23 | 100 |
| Msa0445180 | MtrunA17_Chr5g0401421 | 22.581 | 434 | 288 | 11 | 31 | 440 | 36 | 445 | 8.39e-22 | 97.4 |
| Msa0445180 | MtrunA17_Chr5g0424131 | 22.195 | 401 | 244 | 7 | 56 | 440 | 150 | 498 | 2.00e-21 | 96.7 |
| Msa0445180 | MtrunA17_Chr1g0194621 | 24.372 | 398 | 228 | 11 | 61 | 442 | 179 | 519 | 4.52e-21 | 95.5 |
| Msa0445180 | MtrunA17_Chr7g0236851 | 23.614 | 415 | 259 | 9 | 31 | 440 | 295 | 656 | 4.52e-21 | 96.3 |
| Msa0445180 | MtrunA17_Chr2g0328371 | 24.460 | 278 | 158 | 5 | 112 | 386 | 12 | 240 | 4.62e-21 | 92.0 |
| Msa0445180 | MtrunA17_Chr1g0207361 | 44.554 | 101 | 53 | 2 | 249 | 346 | 64 | 164 | 3.62e-15 | 73.2 |
| Msa0445180 | MtrunA17_Chr6g0468561 | 23.326 | 433 | 244 | 19 | 31 | 441 | 296 | 662 | 4.27e-15 | 77.8 |
| Msa0445180 | MtrunA17_Chr2g0329591 | 21.968 | 437 | 255 | 13 | 31 | 441 | 75 | 451 | 4.39e-15 | 77.0 |
| Msa0445180 | MtrunA17_Chr1g0200401 | 27.468 | 233 | 145 | 8 | 15 | 232 | 62 | 285 | 3.86e-14 | 74.3 |
| Msa0445180 | MtrunA17_Chr2g0323111 | 27.397 | 146 | 105 | 1 | 295 | 440 | 161 | 305 | 2.70e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0445180 | AT1G50420.1 | 46.993 | 449 | 227 | 4 | 7 | 444 | 34 | 482 | 1.62e-141 | 414 |
| Msa0445180 | AT1G66350.1 | 29.535 | 430 | 233 | 10 | 21 | 444 | 144 | 509 | 1.22e-56 | 195 |
| Msa0445180 | AT5G48150.1 | 29.167 | 432 | 242 | 5 | 16 | 441 | 117 | 490 | 2.98e-56 | 194 |
| Msa0445180 | AT5G48150.4 | 29.167 | 432 | 242 | 5 | 16 | 441 | 117 | 490 | 2.98e-56 | 194 |
| Msa0445180 | AT5G48150.2 | 29.167 | 432 | 242 | 5 | 16 | 441 | 117 | 490 | 2.98e-56 | 194 |
| Msa0445180 | AT5G48150.3 | 29.167 | 432 | 242 | 5 | 16 | 441 | 117 | 490 | 2.98e-56 | 194 |
| Msa0445180 | AT1G50600.3 | 28.537 | 417 | 242 | 4 | 31 | 441 | 160 | 526 | 4.95e-53 | 186 |
| Msa0445180 | AT1G50600.1 | 28.537 | 417 | 242 | 4 | 31 | 441 | 231 | 597 | 1.10e-52 | 186 |
| Msa0445180 | AT1G50600.2 | 28.537 | 417 | 242 | 4 | 31 | 441 | 235 | 601 | 1.59e-52 | 186 |
| Msa0445180 | AT2G04890.1 | 29.612 | 412 | 237 | 6 | 31 | 441 | 54 | 413 | 4.22e-52 | 181 |
| Msa0445180 | AT3G03450.1 | 26.651 | 424 | 238 | 9 | 31 | 442 | 184 | 546 | 2.73e-51 | 182 |
| Msa0445180 | AT2G01570.1 | 27.078 | 421 | 235 | 8 | 31 | 442 | 225 | 582 | 3.24e-49 | 177 |
| Msa0445180 | AT1G14920.1 | 27.553 | 421 | 233 | 9 | 31 | 442 | 173 | 530 | 2.10e-48 | 174 |
| Msa0445180 | AT1G21450.1 | 27.358 | 424 | 251 | 5 | 25 | 441 | 220 | 593 | 1.88e-46 | 169 |
| Msa0445180 | AT4G17230.1 | 26.619 | 417 | 250 | 4 | 31 | 441 | 159 | 525 | 2.74e-46 | 168 |
| Msa0445180 | AT4G17230.2 | 26.619 | 417 | 250 | 4 | 31 | 441 | 159 | 525 | 2.74e-46 | 168 |
| Msa0445180 | AT3G54220.1 | 27.295 | 414 | 241 | 7 | 33 | 443 | 296 | 652 | 2.10e-44 | 164 |
| Msa0445180 | AT1G63100.1 | 24.356 | 427 | 255 | 5 | 31 | 440 | 253 | 628 | 2.67e-41 | 155 |
| Msa0445180 | AT1G63100.2 | 24.356 | 427 | 255 | 5 | 31 | 440 | 278 | 653 | 3.16e-41 | 155 |
| Msa0445180 | AT2G29060.2 | 26.841 | 421 | 246 | 9 | 31 | 440 | 285 | 654 | 4.19e-39 | 149 |
| Msa0445180 | AT2G29060.1 | 26.841 | 421 | 246 | 9 | 31 | 440 | 322 | 691 | 4.64e-39 | 150 |
| Msa0445180 | AT1G07530.1 | 25.653 | 421 | 249 | 9 | 31 | 440 | 397 | 764 | 1.11e-37 | 146 |
| Msa0445180 | AT5G59450.1 | 27.014 | 422 | 246 | 10 | 31 | 441 | 228 | 598 | 4.42e-36 | 140 |
| Msa0445180 | AT5G41920.1 | 26.442 | 416 | 242 | 9 | 31 | 441 | 44 | 400 | 1.19e-34 | 134 |
| Msa0445180 | AT3G46600.2 | 25.837 | 418 | 252 | 6 | 31 | 441 | 5 | 371 | 8.80e-34 | 130 |
| Msa0445180 | AT1G07520.2 | 24.242 | 429 | 251 | 9 | 31 | 440 | 155 | 528 | 3.69e-33 | 131 |
| Msa0445180 | AT1G07520.4 | 24.242 | 429 | 251 | 9 | 31 | 440 | 155 | 528 | 3.69e-33 | 131 |
| Msa0445180 | AT3G46600.3 | 26.498 | 434 | 257 | 9 | 19 | 441 | 165 | 547 | 5.86e-33 | 131 |
| Msa0445180 | AT1G07520.1 | 24.178 | 426 | 249 | 9 | 34 | 440 | 322 | 692 | 1.01e-32 | 131 |
| Msa0445180 | AT1G07520.3 | 24.178 | 426 | 249 | 9 | 34 | 440 | 323 | 693 | 1.05e-32 | 131 |
| Msa0445180 | AT3G46600.1 | 25.806 | 434 | 260 | 7 | 19 | 441 | 197 | 579 | 1.43e-32 | 130 |
| Msa0445180 | AT5G66770.1 | 26.005 | 423 | 242 | 9 | 31 | 441 | 221 | 584 | 1.73e-30 | 124 |
| Msa0445180 | AT1G55580.1 | 23.620 | 453 | 252 | 7 | 31 | 441 | 45 | 445 | 8.19e-30 | 120 |
| Msa0445180 | AT2G37650.1 | 26.190 | 420 | 247 | 10 | 31 | 441 | 348 | 713 | 2.68e-29 | 121 |
| Msa0445180 | AT2G37650.2 | 26.190 | 420 | 247 | 10 | 31 | 441 | 336 | 701 | 3.01e-29 | 121 |
| Msa0445180 | AT4G37650.1 | 23.112 | 437 | 256 | 11 | 31 | 441 | 147 | 529 | 2.58e-28 | 117 |
| Msa0445180 | AT3G50650.1 | 24.752 | 404 | 230 | 7 | 53 | 441 | 198 | 542 | 3.90e-28 | 117 |
| Msa0445180 | AT2G29065.1 | 23.653 | 427 | 257 | 8 | 31 | 440 | 253 | 627 | 4.85e-28 | 117 |
| Msa0445180 | AT5G17490.1 | 29.327 | 208 | 136 | 5 | 31 | 234 | 161 | 361 | 9.92e-27 | 112 |
| Msa0445180 | AT5G17490.1 | 34.000 | 150 | 96 | 2 | 295 | 442 | 369 | 517 | 3.57e-22 | 99.4 |
| Msa0445180 | AT5G52510.1 | 22.864 | 433 | 251 | 10 | 31 | 441 | 269 | 640 | 1.56e-25 | 110 |
| Msa0445180 | AT3G49950.1 | 21.810 | 431 | 262 | 12 | 31 | 440 | 31 | 407 | 3.10e-21 | 95.9 |
| Msa0445180 | AT4G08250.1 | 21.461 | 438 | 276 | 12 | 17 | 440 | 93 | 476 | 5.10e-19 | 89.7 |
Find 69 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCAAATTTGCTAATTAT+TGG | 0.115232 | 3_3:+18981304 | None:intergenic |
| CTGTATCGGCCTGGAAATTT+AGG | 0.200404 | 3_3:-18980595 | Msa0445180:CDS |
| GACAACCGAAGCAGAGATTT+TGG | 0.213726 | 3_3:-18981347 | Msa0445180:CDS |
| CCGCTCTTTCTGAAAATTAC+AGG | 0.269016 | 3_3:-18981415 | Msa0445180:CDS |
| AAACTCGAGAGCATGCTTCT+TGG | 0.323417 | 3_3:-18980848 | Msa0445180:CDS |
| TTAATAAAGATCCCCATCTT+AGG | 0.343003 | 3_3:+18981034 | None:intergenic |
| TTATCATCTCCTAAATTTCC+AGG | 0.357387 | 3_3:+18980586 | None:intergenic |
| ATGATTGTTTGCTTGTCTGC+TGG | 0.372800 | 3_3:-18980637 | Msa0445180:CDS |
| TTTAGGTGCTTCACCTAAGA+TGG | 0.374066 | 3_3:-18981047 | Msa0445180:CDS |
| TCAGTAATCACTAAAAGTTT+TGG | 0.380800 | 3_3:+18980992 | None:intergenic |
| TAATTGCTTGATTTATGATC+AGG | 0.388620 | 3_3:+18981545 | None:intergenic |
| AAGAGGTGATAATGCTGAAT+CGG | 0.390322 | 3_3:+18981072 | None:intergenic |
| GGCATGAGAAGCTCGAGAAA+TGG | 0.413133 | 3_3:-18980775 | Msa0445180:CDS |
| AATTCCCTCAGCCAGTGATA+TGG | 0.418979 | 3_3:+18981871 | None:intergenic |
| CACTCAATAAGAGGGATCAT+TGG | 0.426274 | 3_3:+18981823 | None:intergenic |
| CCTTGCCACTGATGACGAAA+TGG | 0.436802 | 3_3:-18981206 | Msa0445180:CDS |
| TCTGAATGGATGTAATTTAA+CGG | 0.442967 | 3_3:-18980957 | Msa0445180:CDS |
| ATTATTGGATTGAACTGTAA+AGG | 0.444269 | 3_3:+18981319 | None:intergenic |
| AAAATCCAAAATCTCTGCTT+CGG | 0.452011 | 3_3:+18981342 | None:intergenic |
| ACAAACTTTAAAGAAACGTC+CGG | 0.459532 | 3_3:-18981443 | Msa0445180:CDS |
| GACGAAATGGTCTCCTCAGC+AGG | 0.460998 | 3_3:-18981193 | Msa0445180:CDS |
| TTCAGAAAGAGCGGACCTCC+CGG | 0.475904 | 3_3:+18981424 | None:intergenic |
| TGTGCAAAATGTGTTGCATC+TGG | 0.490537 | 3_3:-18981802 | Msa0445180:CDS |
| AGAGGTGATAATGCTGAATC+GGG | 0.492776 | 3_3:+18981073 | None:intergenic |
| TTAGGTGCTTCACCTAAGAT+GGG | 0.494167 | 3_3:-18981046 | Msa0445180:CDS |
| CACTAGGTTCGCCATATCAC+TGG | 0.495093 | 3_3:-18981882 | Msa0445180:CDS |
| GAAAACTTGCCTGTCAAGAC+AGG | 0.495316 | 3_3:-18981271 | Msa0445180:CDS |
| GAACAGGAATCAAATCTGAA+TGG | 0.501626 | 3_3:-18980971 | Msa0445180:CDS |
| CAACTCAGCTGTTATGCACT+AGG | 0.503968 | 3_3:-18981898 | Msa0445180:CDS |
| ATTTATCCATTGCGCTGGCT+CGG | 0.505420 | 3_3:+18981471 | None:intergenic |
| ATTTCATCACCTCATGGTAA+TGG | 0.506040 | 3_3:-18981736 | Msa0445180:CDS |
| TGGTAATGGTGTACAAAGAA+TGG | 0.507522 | 3_3:-18981722 | Msa0445180:CDS |
| TCAAGCAATTATTGAATCGA+TGG | 0.507864 | 3_3:-18981533 | Msa0445180:CDS |
| AGCTCGAGAAATGGATTCGA+AGG | 0.510467 | 3_3:-18980766 | Msa0445180:CDS |
| TGAATCGATGGAATGTGAAA+AGG | 0.512101 | 3_3:-18981521 | Msa0445180:CDS |
| ACAGCGTCTCCTGTCTTGAC+AGG | 0.515953 | 3_3:+18981262 | None:intergenic |
| AGGTACCTTTGAGTTACAAT+GGG | 0.518466 | 3_3:-18980721 | Msa0445180:CDS |
| ACTTATTTCAGTGAAGCACT+TGG | 0.520928 | 3_3:-18981697 | Msa0445180:CDS |
| AAGAACATTATTACTTGTGA+GGG | 0.529634 | 3_3:-18980815 | Msa0445180:CDS |
| AAGATAGTTAAACATTTACC+TGG | 0.536030 | 3_3:-18981670 | Msa0445180:CDS |
| TTGTGAGGGAGTCGATAGAA+AGG | 0.541472 | 3_3:-18980801 | Msa0445180:CDS |
| AAGGTACCTTTGAGTTACAA+TGG | 0.542489 | 3_3:-18980722 | Msa0445180:CDS |
| ATAAGATTTATCCATTGCGC+TGG | 0.546863 | 3_3:+18981466 | None:intergenic |
| TTGAGAGCTTTGTAAACCCC+AGG | 0.547807 | 3_3:+18981652 | None:intergenic |
| AGGAATTCATGAAAAGAAAG+AGG | 0.554891 | 3_3:-18981395 | Msa0445180:CDS |
| AAAGAACATTATTACTTGTG+AGG | 0.556889 | 3_3:-18980816 | Msa0445180:CDS |
| TCTCAGATTTCATCACCTCA+TGG | 0.558265 | 3_3:-18981742 | Msa0445180:CDS |
| GAAAGATGCCGCACCTGCTG+AGG | 0.560909 | 3_3:+18981180 | None:intergenic |
| TACCTTTGAGTTACAATGGG+AGG | 0.570596 | 3_3:-18980718 | Msa0445180:CDS |
| TATGCAGAGAACAGCGCACA+TGG | 0.572811 | 3_3:-18981155 | Msa0445180:CDS |
| ATCCTCCCATTGTAACTCAA+AGG | 0.576632 | 3_3:+18980716 | None:intergenic |
| AGATAGTTAAACATTTACCT+GGG | 0.579819 | 3_3:-18981669 | Msa0445180:CDS |
| TGAAATGACTAGACTTGAGA+AGG | 0.591114 | 3_3:-18980741 | Msa0445180:CDS |
| GTTCGCCATATCACTGGCTG+AGG | 0.598645 | 3_3:-18981876 | Msa0445180:CDS |
| TAGGTGCTTCACCTAAGATG+GGG | 0.607732 | 3_3:-18981045 | Msa0445180:CDS |
| AATGGTCTCCTCAGCAGGTG+CGG | 0.608238 | 3_3:-18981188 | Msa0445180:CDS |
| CCATTTCGTCATCAGTGGCA+AGG | 0.614165 | 3_3:+18981206 | None:intergenic |
| GAACAGCGCACATGGGTCAG+AGG | 0.627996 | 3_3:-18981147 | Msa0445180:CDS |
| CAAACTTTAAAGAAACGTCC+GGG | 0.635686 | 3_3:-18981442 | Msa0445180:CDS |
| GGAGACCATTTCGTCATCAG+TGG | 0.638809 | 3_3:+18981201 | None:intergenic |
| GTCAGAGGACTTTCGCAGAG+TGG | 0.652841 | 3_3:-18981132 | Msa0445180:CDS |
| GATAGTTAAACATTTACCTG+GGG | 0.653144 | 3_3:-18981668 | Msa0445180:CDS |
| TTCGCCATATCACTGGCTGA+GGG | 0.658373 | 3_3:-18981875 | Msa0445180:CDS |
| ATTGTTCCGAGCCAGCGCAA+TGG | 0.668394 | 3_3:-18981477 | Msa0445180:CDS |
| AGGGAGTCGATAGAAAGGAA+AGG | 0.670114 | 3_3:-18980796 | Msa0445180:CDS |
| CTTTGTACACCATTACCATG+AGG | 0.671867 | 3_3:+18981727 | None:intergenic |
| ATGCAGAGAACAGCGCACAT+GGG | 0.695050 | 3_3:-18981154 | Msa0445180:CDS |
| ACTTTAAAGAAACGTCCGGG+AGG | 0.713179 | 3_3:-18981439 | Msa0445180:CDS |
| CAGGCCGATACAGAAAACAG+TGG | 0.754690 | 3_3:+18980605 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTTCAAATTTGCTAATTAT+TGG | + | chr3_3:18981189-18981208 | None:intergenic | 20.0% |
| !!! | TCTTCAAATTTGCTAATTAT+TGG | + | chr3_3:18981189-18981208 | None:intergenic | 20.0% |
| ! | AAGATAGTTAAACATTTACC+TGG | - | chr3_3:18980820-18980839 | Msa0445180:CDS | 25.0% |
| ! | AGATAGTTAAACATTTACCT+GGG | - | chr3_3:18980821-18980840 | Msa0445180:CDS | 25.0% |
| !!! | CATAGAAGTATTTTTGAACA+AGG | + | chr3_3:18980897-18980916 | None:intergenic | 25.0% |
| ! | AGGTATGAAAACATCAAAAA+AGG | + | chr3_3:18980928-18980947 | None:intergenic | 25.0% |
| ! | TAATTGCTTGATTTATGATC+AGG | + | chr3_3:18980948-18980967 | None:intergenic | 25.0% |
| ! | ATTATTGGATTGAACTGTAA+AGG | + | chr3_3:18981174-18981193 | None:intergenic | 25.0% |
| !! | TCAGTAATCACTAAAAGTTT+TGG | + | chr3_3:18981501-18981520 | None:intergenic | 25.0% |
| ! | TCTGAATGGATGTAATTTAA+CGG | - | chr3_3:18981533-18981552 | Msa0445180:CDS | 25.0% |
| ! | AAAGAACATTATTACTTGTG+AGG | - | chr3_3:18981674-18981693 | Msa0445180:CDS | 25.0% |
| ! | AAGAACATTATTACTTGTGA+GGG | - | chr3_3:18981675-18981694 | Msa0445180:CDS | 25.0% |
| ! | AAGATAGTTAAACATTTACC+TGG | - | chr3_3:18980820-18980839 | Msa0445180:CDS | 25.0% |
| ! | AGATAGTTAAACATTTACCT+GGG | - | chr3_3:18980821-18980840 | Msa0445180:CDS | 25.0% |
| !!! | CATAGAAGTATTTTTGAACA+AGG | + | chr3_3:18980897-18980916 | None:intergenic | 25.0% |
| ! | AGGTATGAAAACATCAAAAA+AGG | + | chr3_3:18980928-18980947 | None:intergenic | 25.0% |
| ! | TAATTGCTTGATTTATGATC+AGG | + | chr3_3:18980948-18980967 | None:intergenic | 25.0% |
| ! | ATTATTGGATTGAACTGTAA+AGG | + | chr3_3:18981174-18981193 | None:intergenic | 25.0% |
| !! | TCAGTAATCACTAAAAGTTT+TGG | + | chr3_3:18981501-18981520 | None:intergenic | 25.0% |
| ! | TCTGAATGGATGTAATTTAA+CGG | - | chr3_3:18981533-18981552 | Msa0445180:CDS | 25.0% |
| ! | AAAGAACATTATTACTTGTG+AGG | - | chr3_3:18981674-18981693 | Msa0445180:CDS | 25.0% |
| ! | AAGAACATTATTACTTGTGA+GGG | - | chr3_3:18981675-18981694 | Msa0445180:CDS | 25.0% |
| ! | ATTTTGCACACTCAATAAGA+GGG | + | chr3_3:18980678-18980697 | None:intergenic | 30.0% |
| GATAGTTAAACATTTACCTG+GGG | - | chr3_3:18980822-18980841 | Msa0445180:CDS | 30.0% | |
| TCAAGCAATTATTGAATCGA+TGG | - | chr3_3:18980957-18980976 | Msa0445180:CDS | 30.0% | |
| ! | ACAAACTTTAAAGAAACGTC+CGG | - | chr3_3:18981047-18981066 | Msa0445180:CDS | 30.0% |
| AGGAATTCATGAAAAGAAAG+AGG | - | chr3_3:18981095-18981114 | Msa0445180:CDS | 30.0% | |
| AAAATCCAAAATCTCTGCTT+CGG | + | chr3_3:18981151-18981170 | None:intergenic | 30.0% | |
| !!! | GCATTATCACCTCTTTTTTT+AGG | - | chr3_3:18981426-18981445 | Msa0445180:CDS | 30.0% |
| TTAATAAAGATCCCCATCTT+AGG | + | chr3_3:18981459-18981478 | None:intergenic | 30.0% | |
| ! | ACTTTTAGTGATTACTGAAC+AGG | - | chr3_3:18981503-18981522 | Msa0445180:CDS | 30.0% |
| ! | ATTTTGCACACTCAATAAGA+GGG | + | chr3_3:18980678-18980697 | None:intergenic | 30.0% |
| GATAGTTAAACATTTACCTG+GGG | - | chr3_3:18980822-18980841 | Msa0445180:CDS | 30.0% | |
| TCAAGCAATTATTGAATCGA+TGG | - | chr3_3:18980957-18980976 | Msa0445180:CDS | 30.0% | |
| ! | ACAAACTTTAAAGAAACGTC+CGG | - | chr3_3:18981047-18981066 | Msa0445180:CDS | 30.0% |
| AGGAATTCATGAAAAGAAAG+AGG | - | chr3_3:18981095-18981114 | Msa0445180:CDS | 30.0% | |
| AAAATCCAAAATCTCTGCTT+CGG | + | chr3_3:18981151-18981170 | None:intergenic | 30.0% | |
| !!! | GCATTATCACCTCTTTTTTT+AGG | - | chr3_3:18981426-18981445 | Msa0445180:CDS | 30.0% |
| TTAATAAAGATCCCCATCTT+AGG | + | chr3_3:18981459-18981478 | None:intergenic | 30.0% | |
| ! | ACTTTTAGTGATTACTGAAC+AGG | - | chr3_3:18981503-18981522 | Msa0445180:CDS | 30.0% |
| ! | CATTTTGCACACTCAATAAG+AGG | + | chr3_3:18980679-18980698 | None:intergenic | 35.0% |
| ATTTCATCACCTCATGGTAA+TGG | - | chr3_3:18980754-18980773 | Msa0445180:CDS | 35.0% | |
| !! | TGGTAATGGTGTACAAAGAA+TGG | - | chr3_3:18980768-18980787 | Msa0445180:CDS | 35.0% |
| ! | ACTTATTTCAGTGAAGCACT+TGG | - | chr3_3:18980793-18980812 | Msa0445180:CDS | 35.0% |
| ! | TGAAGACGATGATATTTTCG+AGG | + | chr3_3:18980866-18980885 | None:intergenic | 35.0% |
| TGAATCGATGGAATGTGAAA+AGG | - | chr3_3:18980969-18980988 | Msa0445180:CDS | 35.0% | |
| ATAAGATTTATCCATTGCGC+TGG | + | chr3_3:18981027-18981046 | None:intergenic | 35.0% | |
| ! | CAAACTTTAAAGAAACGTCC+GGG | - | chr3_3:18981048-18981067 | Msa0445180:CDS | 35.0% |
| ! | CCTGTAATTTTCAGAAAGAG+CGG | + | chr3_3:18981078-18981097 | None:intergenic | 35.0% |
| ! | AAGAGGTGATAATGCTGAAT+CGG | + | chr3_3:18981421-18981440 | None:intergenic | 35.0% |
| GAACAGGAATCAAATCTGAA+TGG | - | chr3_3:18981519-18981538 | Msa0445180:CDS | 35.0% | |
| !! | GATCGAGCATTGTACTTTTA+CGG | - | chr3_3:18981564-18981583 | Msa0445180:CDS | 35.0% |
| TGAAATGACTAGACTTGAGA+AGG | - | chr3_3:18981749-18981768 | Msa0445180:CDS | 35.0% | |
| ! | AAGGTACCTTTGAGTTACAA+TGG | - | chr3_3:18981768-18981787 | Msa0445180:CDS | 35.0% |
| ! | AGGTACCTTTGAGTTACAAT+GGG | - | chr3_3:18981769-18981788 | Msa0445180:CDS | 35.0% |
| ! | CATTTTGCACACTCAATAAG+AGG | + | chr3_3:18980679-18980698 | None:intergenic | 35.0% |
| ATTTCATCACCTCATGGTAA+TGG | - | chr3_3:18980754-18980773 | Msa0445180:CDS | 35.0% | |
| !! | TGGTAATGGTGTACAAAGAA+TGG | - | chr3_3:18980768-18980787 | Msa0445180:CDS | 35.0% |
| ! | ACTTATTTCAGTGAAGCACT+TGG | - | chr3_3:18980793-18980812 | Msa0445180:CDS | 35.0% |
| ! | TGAAGACGATGATATTTTCG+AGG | + | chr3_3:18980866-18980885 | None:intergenic | 35.0% |
| TGAATCGATGGAATGTGAAA+AGG | - | chr3_3:18980969-18980988 | Msa0445180:CDS | 35.0% | |
| ATAAGATTTATCCATTGCGC+TGG | + | chr3_3:18981027-18981046 | None:intergenic | 35.0% | |
| ! | CAAACTTTAAAGAAACGTCC+GGG | - | chr3_3:18981048-18981067 | Msa0445180:CDS | 35.0% |
| ! | CCTGTAATTTTCAGAAAGAG+CGG | + | chr3_3:18981078-18981097 | None:intergenic | 35.0% |
| ! | AAGAGGTGATAATGCTGAAT+CGG | + | chr3_3:18981421-18981440 | None:intergenic | 35.0% |
| GAACAGGAATCAAATCTGAA+TGG | - | chr3_3:18981519-18981538 | Msa0445180:CDS | 35.0% | |
| !! | GATCGAGCATTGTACTTTTA+CGG | - | chr3_3:18981564-18981583 | Msa0445180:CDS | 35.0% |
| TGAAATGACTAGACTTGAGA+AGG | - | chr3_3:18981749-18981768 | Msa0445180:CDS | 35.0% | |
| ! | AAGGTACCTTTGAGTTACAA+TGG | - | chr3_3:18981768-18981787 | Msa0445180:CDS | 35.0% |
| ! | AGGTACCTTTGAGTTACAAT+GGG | - | chr3_3:18981769-18981788 | Msa0445180:CDS | 35.0% |
| CACTCAATAAGAGGGATCAT+TGG | + | chr3_3:18980670-18980689 | None:intergenic | 40.0% | |
| TGTGCAAAATGTGTTGCATC+TGG | - | chr3_3:18980688-18980707 | Msa0445180:CDS | 40.0% | |
| TCTCAGATTTCATCACCTCA+TGG | - | chr3_3:18980748-18980767 | Msa0445180:CDS | 40.0% | |
| CTTTGTACACCATTACCATG+AGG | + | chr3_3:18980766-18980785 | None:intergenic | 40.0% | |
| ! | CCGCTCTTTCTGAAAATTAC+AGG | - | chr3_3:18981075-18981094 | Msa0445180:CDS | 40.0% |
| ! | AGAGGTGATAATGCTGAATC+GGG | + | chr3_3:18981420-18981439 | None:intergenic | 40.0% |
| ! | GGTGAAGCACCTAAAAAAAG+AGG | + | chr3_3:18981438-18981457 | None:intergenic | 40.0% |
| TTTAGGTGCTTCACCTAAGA+TGG | - | chr3_3:18981443-18981462 | Msa0445180:CDS | 40.0% | |
| TTAGGTGCTTCACCTAAGAT+GGG | - | chr3_3:18981444-18981463 | Msa0445180:CDS | 40.0% | |
| ! | TACCTTTGAGTTACAATGGG+AGG | - | chr3_3:18981772-18981791 | Msa0445180:CDS | 40.0% |
| ATCCTCCCATTGTAACTCAA+AGG | + | chr3_3:18981777-18981796 | None:intergenic | 40.0% | |
| ATGATTGTTTGCTTGTCTGC+TGG | - | chr3_3:18981853-18981872 | Msa0445180:CDS | 40.0% | |
| ! | CAGACCACTGTTTTCTGTAT+CGG | - | chr3_3:18981881-18981900 | Msa0445180:CDS | 40.0% |
| CACTCAATAAGAGGGATCAT+TGG | + | chr3_3:18980670-18980689 | None:intergenic | 40.0% | |
| TGTGCAAAATGTGTTGCATC+TGG | - | chr3_3:18980688-18980707 | Msa0445180:CDS | 40.0% | |
| TCTCAGATTTCATCACCTCA+TGG | - | chr3_3:18980748-18980767 | Msa0445180:CDS | 40.0% | |
| CTTTGTACACCATTACCATG+AGG | + | chr3_3:18980766-18980785 | None:intergenic | 40.0% | |
| ! | CCGCTCTTTCTGAAAATTAC+AGG | - | chr3_3:18981075-18981094 | Msa0445180:CDS | 40.0% |
| ! | AGAGGTGATAATGCTGAATC+GGG | + | chr3_3:18981420-18981439 | None:intergenic | 40.0% |
| ! | GGTGAAGCACCTAAAAAAAG+AGG | + | chr3_3:18981438-18981457 | None:intergenic | 40.0% |
| TTTAGGTGCTTCACCTAAGA+TGG | - | chr3_3:18981443-18981462 | Msa0445180:CDS | 40.0% | |
| TTAGGTGCTTCACCTAAGAT+GGG | - | chr3_3:18981444-18981463 | Msa0445180:CDS | 40.0% | |
| ! | TACCTTTGAGTTACAATGGG+AGG | - | chr3_3:18981772-18981791 | Msa0445180:CDS | 40.0% |
| ATCCTCCCATTGTAACTCAA+AGG | + | chr3_3:18981777-18981796 | None:intergenic | 40.0% | |
| ATGATTGTTTGCTTGTCTGC+TGG | - | chr3_3:18981853-18981872 | Msa0445180:CDS | 40.0% | |
| ! | CAGACCACTGTTTTCTGTAT+CGG | - | chr3_3:18981881-18981900 | Msa0445180:CDS | 40.0% |
| CAACTCAGCTGTTATGCACT+AGG | - | chr3_3:18980592-18980611 | Msa0445180:CDS | 45.0% | |
| AATTCCCTCAGCCAGTGATA+TGG | + | chr3_3:18980622-18980641 | None:intergenic | 45.0% | |
| ! | TTGAGAGCTTTGTAAACCCC+AGG | + | chr3_3:18980841-18980860 | None:intergenic | 45.0% |
| !! | ATTTATCCATTGCGCTGGCT+CGG | + | chr3_3:18981022-18981041 | None:intergenic | 45.0% |
| ! | ACTTTAAAGAAACGTCCGGG+AGG | - | chr3_3:18981051-18981070 | Msa0445180:CDS | 45.0% |
| ! | GACAACCGAAGCAGAGATTT+TGG | - | chr3_3:18981143-18981162 | Msa0445180:CDS | 45.0% |
| GAAAACTTGCCTGTCAAGAC+AGG | - | chr3_3:18981219-18981238 | Msa0445180:CDS | 45.0% | |
| TAGGTGCTTCACCTAAGATG+GGG | - | chr3_3:18981445-18981464 | Msa0445180:CDS | 45.0% | |
| !!! | CGGTTCACTTTTTGACTGCT+TGG | - | chr3_3:18981584-18981603 | Msa0445180:CDS | 45.0% |
| ! | AAACTCGAGAGCATGCTTCT+TGG | - | chr3_3:18981642-18981661 | Msa0445180:CDS | 45.0% |
| TTGTGAGGGAGTCGATAGAA+AGG | - | chr3_3:18981689-18981708 | Msa0445180:CDS | 45.0% | |
| AGGGAGTCGATAGAAAGGAA+AGG | - | chr3_3:18981694-18981713 | Msa0445180:CDS | 45.0% | |
| ! | AGCTCGAGAAATGGATTCGA+AGG | - | chr3_3:18981724-18981743 | Msa0445180:CDS | 45.0% |
| ! | CTGTATCGGCCTGGAAATTT+AGG | - | chr3_3:18981895-18981914 | Msa0445180:CDS | 45.0% |
| CAACTCAGCTGTTATGCACT+AGG | - | chr3_3:18980592-18980611 | Msa0445180:CDS | 45.0% | |
| AATTCCCTCAGCCAGTGATA+TGG | + | chr3_3:18980622-18980641 | None:intergenic | 45.0% | |
| ! | TTGAGAGCTTTGTAAACCCC+AGG | + | chr3_3:18980841-18980860 | None:intergenic | 45.0% |
| !! | ATTTATCCATTGCGCTGGCT+CGG | + | chr3_3:18981022-18981041 | None:intergenic | 45.0% |
| ! | ACTTTAAAGAAACGTCCGGG+AGG | - | chr3_3:18981051-18981070 | Msa0445180:CDS | 45.0% |
| ! | GACAACCGAAGCAGAGATTT+TGG | - | chr3_3:18981143-18981162 | Msa0445180:CDS | 45.0% |
| GAAAACTTGCCTGTCAAGAC+AGG | - | chr3_3:18981219-18981238 | Msa0445180:CDS | 45.0% | |
| TAGGTGCTTCACCTAAGATG+GGG | - | chr3_3:18981445-18981464 | Msa0445180:CDS | 45.0% | |
| !!! | CGGTTCACTTTTTGACTGCT+TGG | - | chr3_3:18981584-18981603 | Msa0445180:CDS | 45.0% |
| ! | AAACTCGAGAGCATGCTTCT+TGG | - | chr3_3:18981642-18981661 | Msa0445180:CDS | 45.0% |
| TTGTGAGGGAGTCGATAGAA+AGG | - | chr3_3:18981689-18981708 | Msa0445180:CDS | 45.0% | |
| AGGGAGTCGATAGAAAGGAA+AGG | - | chr3_3:18981694-18981713 | Msa0445180:CDS | 45.0% | |
| ! | AGCTCGAGAAATGGATTCGA+AGG | - | chr3_3:18981724-18981743 | Msa0445180:CDS | 45.0% |
| ! | CTGTATCGGCCTGGAAATTT+AGG | - | chr3_3:18981895-18981914 | Msa0445180:CDS | 45.0% |
| CACTAGGTTCGCCATATCAC+TGG | - | chr3_3:18980608-18980627 | Msa0445180:CDS | 50.0% | |
| ! | TTCGCCATATCACTGGCTGA+GGG | - | chr3_3:18980615-18980634 | Msa0445180:CDS | 50.0% |
| CCATTTCGTCATCAGTGGCA+AGG | + | chr3_3:18981287-18981306 | None:intergenic | 50.0% | |
| ! | CCTTGCCACTGATGACGAAA+TGG | - | chr3_3:18981284-18981303 | Msa0445180:CDS | 50.0% |
| GGAGACCATTTCGTCATCAG+TGG | + | chr3_3:18981292-18981311 | None:intergenic | 50.0% | |
| TATGCAGAGAACAGCGCACA+TGG | - | chr3_3:18981335-18981354 | Msa0445180:CDS | 50.0% | |
| ATGCAGAGAACAGCGCACAT+GGG | - | chr3_3:18981336-18981355 | Msa0445180:CDS | 50.0% | |
| GGCATGAGAAGCTCGAGAAA+TGG | - | chr3_3:18981715-18981734 | Msa0445180:CDS | 50.0% | |
| CAGGCCGATACAGAAAACAG+TGG | + | chr3_3:18981888-18981907 | None:intergenic | 50.0% | |
| !! | CACTGTTTTCTGTATCGGCC+TGG | - | chr3_3:18981886-18981905 | Msa0445180:CDS | 50.0% |
| CACTAGGTTCGCCATATCAC+TGG | - | chr3_3:18980608-18980627 | Msa0445180:CDS | 50.0% | |
| ! | TTCGCCATATCACTGGCTGA+GGG | - | chr3_3:18980615-18980634 | Msa0445180:CDS | 50.0% |
| CCATTTCGTCATCAGTGGCA+AGG | + | chr3_3:18981287-18981306 | None:intergenic | 50.0% | |
| ! | CCTTGCCACTGATGACGAAA+TGG | - | chr3_3:18981284-18981303 | Msa0445180:CDS | 50.0% |
| GGAGACCATTTCGTCATCAG+TGG | + | chr3_3:18981292-18981311 | None:intergenic | 50.0% | |
| TATGCAGAGAACAGCGCACA+TGG | - | chr3_3:18981335-18981354 | Msa0445180:CDS | 50.0% | |
| ATGCAGAGAACAGCGCACAT+GGG | - | chr3_3:18981336-18981355 | Msa0445180:CDS | 50.0% | |
| GGCATGAGAAGCTCGAGAAA+TGG | - | chr3_3:18981715-18981734 | Msa0445180:CDS | 50.0% | |
| CAGGCCGATACAGAAAACAG+TGG | + | chr3_3:18981888-18981907 | None:intergenic | 50.0% | |
| !! | CACTGTTTTCTGTATCGGCC+TGG | - | chr3_3:18981886-18981905 | Msa0445180:CDS | 50.0% |
| ! | GTTCGCCATATCACTGGCTG+AGG | - | chr3_3:18980614-18980633 | Msa0445180:CDS | 55.0% |
| ATTGTTCCGAGCCAGCGCAA+TGG | - | chr3_3:18981013-18981032 | Msa0445180:CDS | 55.0% | |
| TTCAGAAAGAGCGGACCTCC+CGG | + | chr3_3:18981069-18981088 | None:intergenic | 55.0% | |
| ACAGCGTCTCCTGTCTTGAC+AGG | + | chr3_3:18981231-18981250 | None:intergenic | 55.0% | |
| GACGAAATGGTCTCCTCAGC+AGG | - | chr3_3:18981297-18981316 | Msa0445180:CDS | 55.0% | |
| AATGGTCTCCTCAGCAGGTG+CGG | - | chr3_3:18981302-18981321 | Msa0445180:CDS | 55.0% | |
| GTCAGAGGACTTTCGCAGAG+TGG | - | chr3_3:18981358-18981377 | Msa0445180:CDS | 55.0% | |
| ! | GTTCGCCATATCACTGGCTG+AGG | - | chr3_3:18980614-18980633 | Msa0445180:CDS | 55.0% |
| ATTGTTCCGAGCCAGCGCAA+TGG | - | chr3_3:18981013-18981032 | Msa0445180:CDS | 55.0% | |
| TTCAGAAAGAGCGGACCTCC+CGG | + | chr3_3:18981069-18981088 | None:intergenic | 55.0% | |
| ACAGCGTCTCCTGTCTTGAC+AGG | + | chr3_3:18981231-18981250 | None:intergenic | 55.0% | |
| GACGAAATGGTCTCCTCAGC+AGG | - | chr3_3:18981297-18981316 | Msa0445180:CDS | 55.0% | |
| AATGGTCTCCTCAGCAGGTG+CGG | - | chr3_3:18981302-18981321 | Msa0445180:CDS | 55.0% | |
| GTCAGAGGACTTTCGCAGAG+TGG | - | chr3_3:18981358-18981377 | Msa0445180:CDS | 55.0% | |
| GAAAGATGCCGCACCTGCTG+AGG | + | chr3_3:18981313-18981332 | None:intergenic | 60.0% | |
| GAACAGCGCACATGGGTCAG+AGG | - | chr3_3:18981343-18981362 | Msa0445180:CDS | 60.0% | |
| GAAAGATGCCGCACCTGCTG+AGG | + | chr3_3:18981313-18981332 | None:intergenic | 60.0% | |
| GAACAGCGCACATGGGTCAG+AGG | - | chr3_3:18981343-18981362 | Msa0445180:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 18980589 | 18981923 | 18980589 | ID=Msa0445180;Name=Msa0445180 |
| chr3_3 | mRNA | 18980589 | 18981923 | 18980589 | ID=Msa0445180-mRNA-1;Parent=Msa0445180;Name=Msa0445180-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|-1|0|1|-1|1|1|0|444 |
| chr3_3 | exon | 18980589 | 18981923 | 18980589 | ID=Msa0445180-mRNA-1:exon:4037;Parent=Msa0445180-mRNA-1 |
| chr3_3 | CDS | 18980589 | 18981923 | 18980589 | ID=Msa0445180-mRNA-1:cds;Parent=Msa0445180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
