AlfalfaGEDB | Msa0448210

M. sativa cultivar zhongmu-4 / Msa0448210

KEGG: K20791
GO: GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004596 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0006950 GO:0007275 GO:0008080 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010035 GO:0010154 GO:0010467 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0017198 GO:0018002 GO:0018193 GO:0018200 GO:0018209 GO:0019538 GO:0022414 GO:0022626 GO:0030920 GO:0031248 GO:0031365 GO:0031414 GO:0031415 GO:0032501 GO:0032502 GO:0032991 GO:0034212 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051604 GO:0061458 GO:0071704 GO:1901564 GO:1901700 GO:1902493 GO:1902494 GO:1990189 GO:1990190 GO:1990234 GO:1990904
PFAM: PF00583.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0448210	XP_003599501.1	99.454	183	1	0	1	183	1	183	8.63e-134	382

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0448210	sp\|Q9FKI4\|NAA10_ARATH	87.640	178	21	1	1	178	1	177	1.54e-105	303

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0448210	B7FJ76	99.454	183	1	0	1	183	1	183	4.12e-134	382

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0448210	TR	GNAT

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0448210	MtrunA17_Chr3g0090311	99.454	183	1	0	1	183	1	183	7.94e-138	382
Msa0448210	MtrunA17_Chr7g0275421	34.400	125	81	1	27	151	12	135	1.23e-21	86.3
Msa0448210	MtrunA17_Chr7g0252251	31.373	153	96	4	23	169	65	214	3.86e-14	67.8
Msa0448210	MtrunA17_Chr3g0098461	37.241	145	71	5	41	183	37	163	4.59e-14	66.6
Msa0448210	MtrunA17_Chr3g0088851	43.000	100	48	2	2	101	6	96	2.39e-13	63.5

Showing 1 to 5 of 5 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0448210	AT5G13780.1	87.640	178	21	1	1	178	1	177	1.57e-106	303
Msa0448210	AT1G03150.1	37.086	151	94	1	1	151	1	150	8.37e-31	110
Msa0448210	AT2G38130.2	34.921	126	79	3	23	148	38	160	1.95e-14	68.6
Msa0448210	AT2G38130.1	34.921	126	79	3	23	148	38	160	1.95e-14	68.6

Showing 1 to 4 of 4 entries

Previous1Next

Find 70 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGCTGCGGCCATGAA+AGG	0.545740	3_3:+27723731	None:intergenic
AACAAAGACACTTAAGAAAC+TGG	0.371891	3_3:+27718379	None:intergenic
AACAACATCCACCGCCATGG+TGG	0.672650	3_3:+27718473	None:intergenic
AACATCCACCGCCATGGTGG+TGG	0.527634	3_3:+27718476	None:intergenic
AAGAATTAGGGTTAGGGTTT+TGG	0.227708	3_3:+27723874	None:intergenic
AATTTGTACACAGAGACATT+GGG	0.436747	3_3:-27718613	Msa0448210:CDS
ACATGAGAAAGCAACTCAAG+GGG	0.666287	3_3:-27718534	Msa0448210:CDS
ACGTAACAGAGAGCATTATT+CGG	0.452550	3_3:+27718298	None:intergenic
ACGTTGCTGAAGATTACAAC+GGG	0.530845	3_3:-27723708	Msa0448210:CDS
AGGGGATTGCACACACAATC+AGG	0.476914	3_3:+27718423	None:intergenic

Showing 1 to 10 of 70 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GATTTGAAGAATTAGGGTTA+GGG	+	chr3_3:27718127-27718146	None:intergenic	30.0%
GTTGTGGATTTGAAGAATTA+GGG	+	chr3_3:27718133-27718152	None:intergenic	30.0%
TGTTGTGGATTTGAAGAATT+AGG	+	chr3_3:27718134-27718153	None:intergenic	30.0%
ATTCTTCAAATCCACAACAA+TGG	-	chr3_3:27718135-27718154	Msa0448210:three_prime_UTR	30.0%
TTACTTAGTTATCTCGAGTT+CGG	-	chr3_3:27718492-27718511	Msa0448210:CDS	30.0%
TGCTTATAAAAGTGACTGAA+GGG	+	chr3_3:27719162-27719181	None:intergenic	30.0%
TTGCTTATAAAAGTGACTGA+AGG	+	chr3_3:27719163-27719182	None:intergenic	30.0%
TCAATTAAGTCAATCCAAAC+AGG	-	chr3_3:27719441-27719460	Msa0448210:intron	30.0%
GAACTAACTACTAACAAACT+TGG	+	chr3_3:27719849-27719868	None:intergenic	30.0%
TGGAGTAAGTGAAAGAATTT+AGG	-	chr3_3:27719921-27719940	Msa0448210:intron	30.0%

Showing 1 to 10 of 346 entries

Previous1 2 3 4 5…35Next

Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	27718058	27723956	27718058	ID=Msa0448210;Name=Msa0448210
chr3_3	mRNA	27718058	27723956	27718058	ID=Msa0448210-mRNA-1;Parent=Msa0448210;Name=Msa0448210-mRNA-1;_AED=0.01;_eAED=0.01;_QI=96\|1\|1\|1\|1\|1\|2\|383\|183
chr3_3	exon	27718058	27718692	27718058	ID=Msa0448210-mRNA-1:exon:5403;Parent=Msa0448210-mRNA-1
chr3_3	exon	27723561	27723956	27723561	ID=Msa0448210-mRNA-1:exon:5402;Parent=Msa0448210-mRNA-1
chr3_3	five_prime_UTR	27723861	27723956	27723861	ID=Msa0448210-mRNA-1:five_prime_utr;Parent=Msa0448210-mRNA-1
chr3_3	CDS	27723561	27723860	27723561	ID=Msa0448210-mRNA-1:cds;Parent=Msa0448210-mRNA-1
chr3_3	CDS	27718441	27718692	27718441	ID=Msa0448210-mRNA-1:cds;Parent=Msa0448210-mRNA-1
chr3_3	three_prime_UTR	27718058	27718440	27718058	ID=Msa0448210-mRNA-1:three_prime_utr;Parent=Msa0448210-mRNA-1

Gene Sequence

>Msa0448210

ATGGTGTGCATACGCAAAGCAAACGTAAACGACCTACTCGCGATGCAAGCGTGCAATCTCTTCTGCTTACCAGAGAATTACCAGATGAAGTATTATCTCTACCACATCCTTTCATGGCCGCAGCTTCTTTACGTTGCTGAAGATTACAACGGGCGTATTGTTGGGTATGTTCTTGCGAAGATGGAAGAAGAGACGAATGAGTGTCATGGTCATATTACTTCTCTTGCTGTGTTGAGGACTCATAGGAAGTTGGGGATTGCTACTAAGCTTATGACTGCTGCGCAGAATGCTATGGAACAGGTGTTTGGTGCTGAGTACGTGTCGCTGCACGTCAGGAAGAGCAACCGTGCAGCTTTTAATTTGTACACAGAGACATTGGGGTACAAGATTCATGATGTGGAGGCCAAGTATTATGCCGATGGTGAGGATGCTTACGACATGAGAAAGCAACTCAAGGGGAAGACGATACACCCACCACAGCATCATCATCACCACCACCACCATGGCGGTGGATGTTGTTCTGGTGAGACCAAGGGGAATGCTAAAGCCTGA

Protein sequence

>Msa0448210

MVCIRKANVNDLLAMQACNLFCLPENYQMKYYLYHILSWPQLLYVAEDYNGRIVGYVLAKMEEETNECHGHITSLAVLRTHRKLGIATKLMTAAQNAMEQVFGAEYVSLHVRKSNRAAFNLYTETLGYKIHDVEAKYYADGEDAYDMRKQLKGKTIHPPQHHHHHHHHGGGCCSGETKGNAKA*