AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0448670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0448670 MtrunA17_Chr1g0177151 61.868 257 94 1 1 257 1 253 2.00e-114 331
Msa0448670 MtrunA17_Chr7g0224601 63.273 275 97 2 12 282 2 276 1.82e-108 317
Msa0448670 MtrunA17_Chr8g0392781 53.628 317 112 2 1 282 1 317 1.18e-106 315
Msa0448670 MtrunA17_Chr3g0099561 61.224 245 95 0 38 282 26 270 7.49e-101 298
Msa0448670 MtrunA17_Chr5g0444621 62.385 218 82 0 70 287 52 269 3.22e-90 270
Msa0448670 MtrunA17_Chr6g0477171 62.814 199 74 0 59 257 45 243 1.53e-83 252
Msa0448670 MtrunA17_Chr3g0083811 96.907 97 3 0 186 282 1 97 8.13e-63 194
Msa0448670 MtrunA17_Chr3g0083821 73.874 111 29 0 54 164 10 120 2.83e-51 165
Msa0448670 MtrunA17_Chr5g0444631 66.038 53 18 0 112 164 4 56 1.53e-18 78.2
Msa0448670 MtrunA17_Chr6g0477181 61.017 59 23 0 1 59 1 59 1.40e-15 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0448670 AT3G20800.1 56.929 267 110 1 21 282 17 283 3.41e-101 299
Msa0448670 AT5G12980.1 55.510 245 109 0 31 275 28 272 3.95e-95 284
Msa0448670 AT2G32550.2 34.884 258 151 6 53 297 67 320 2.41e-34 127
Msa0448670 AT2G32550.3 35.223 247 143 6 64 297 39 281 6.55e-34 125
Msa0448670 AT2G32550.1 34.934 229 132 6 82 297 2 226 5.67e-29 111

Find 52 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGAACTTGGACCTTTATTA+TGG 0.221177 3_3:+29728823 Msa0448670:CDS
ATATTAAATTATATCATATT+AGG 0.243236 3_3:-29731916 None:intergenic
ATAGAAACCCATGGCTTCTT+TGG 0.266786 3_3:-29731316 None:intergenic
CTCGCTTATCTCAAAATTGC+AGG 0.298861 3_3:+29731676 Msa0448670:CDS
AGAAATGAGATCCTTGTATC+AGG 0.301701 3_3:-29730119 None:intergenic
AGGAATGGATATAAATATAA+AGG 0.360461 3_3:-29730509 None:intergenic
GTTGCTAGTCTTGGAGTCAT+TGG 0.372727 3_3:+29730572 Msa0448670:CDS
TTGGCATCTTTGAGCCTGTT+TGG 0.379455 3_3:-29731820 None:intergenic
CCAACAGTATTCCATAATAA+AGG 0.383147 3_3:-29728834 None:intergenic
TATGATCAGTGGTGCTAGAT+TGG 0.401740 3_3:-29727375 None:intergenic
TATATTAGACGACGATGGTT+TGG 0.405062 3_3:+29731533 Msa0448670:CDS
CAATGTTCTAGCATTACTTC+AGG 0.422671 3_3:+29729885 Msa0448670:CDS
TCAGAGCACCAAGTTATTTG+AGG 0.428345 3_3:+29728803 Msa0448670:intron
TAACAACTTATCTTCCAAAC+AGG 0.438040 3_3:+29731806 Msa0448670:CDS
TTCTTTGTTGAGAGCGATTG+AGG 0.439462 3_3:-29727316 None:intergenic
GATTGTGAGGGAGAGAGATT+CGG 0.440290 3_3:-29729850 None:intergenic
AATTTGAGGGTTGCTAGTCT+TGG 0.451958 3_3:+29730563 Msa0448670:CDS
ATGATCAGTGGTGCTAGATT+GGG 0.463771 3_3:-29727374 None:intergenic
AATCTAGCACCACTGATCAT+AGG 0.464495 3_3:+29727377 Msa0448670:CDS
CACCCTCACCTCGTTTGTTG+AGG 0.472935 3_3:+29731634 Msa0448670:CDS
TAACACCCTTTGAGAATTTG+AGG 0.473351 3_3:+29730549 Msa0448670:CDS
TGTTATTGAACTCAGCAATC+CGG 0.481393 3_3:+29727420 Msa0448670:CDS
ACCAAGTTATTTGAGGAACT+TGG 0.485648 3_3:+29728810 Msa0448670:CDS
AGATTCGGTGGTGAAAGAGT+AGG 0.488495 3_3:-29729835 None:intergenic
GCTAGTCTTGGAGTCATTGG+TGG 0.491588 3_3:+29730575 Msa0448670:CDS
CCTTTATTATGGAATACTGT+TGG 0.492405 3_3:+29728834 Msa0448670:CDS
TCCAAGTTCCTCAAATAACT+TGG 0.522228 3_3:-29728811 None:intergenic
AACACCCTTTGAGAATTTGA+GGG 0.530151 3_3:+29730550 Msa0448670:CDS
TGGCATCTCACCCTGATACA+AGG 0.537570 3_3:+29730108 Msa0448670:CDS
AGTCATTGGTGGCTCGATGA+AGG 0.546340 3_3:+29730586 Msa0448670:CDS
GCAACCCTCAAATTCTCAAA+GGG 0.548073 3_3:-29730554 None:intergenic
AGCCTCAACAAACGAGGTGA+GGG 0.559488 3_3:-29731636 None:intergenic
AGCAACCCTCAAATTCTCAA+AGG 0.559876 3_3:-29730555 None:intergenic
TGCTTGTCTAATATGCAAAA+CGG 0.562781 3_3:+29731363 Msa0448670:CDS
ACAAGGATCTCATTTCTCAA+TGG 0.566776 3_3:+29730125 Msa0448670:CDS
AAGCCTCAACAAACGAGGTG+AGG 0.569309 3_3:-29731637 None:intergenic
GGTTAACACCAAAGAAGCCA+TGG 0.576851 3_3:+29731308 Msa0448670:intron
TGCTCTCTATGTGCTCTCCA+AGG 0.584461 3_3:+29727456 Msa0448670:CDS
CTAGATTGGGTAGAATCACC+AGG 0.589884 3_3:-29727361 None:intergenic
GAAATGAGATCCTTGTATCA+GGG 0.596244 3_3:-29730118 None:intergenic
CACACTCGAGTTGATTGTGA+GGG 0.603583 3_3:-29729862 None:intergenic
TTTCGTGTAAGTACTTCTTG+TGG 0.613050 3_3:+29731856 Msa0448670:CDS
TAGCACCACTGATCATAGGA+TGG 0.627844 3_3:+29727381 Msa0448670:CDS
AAAATTATATTAGACGACGA+TGG 0.627877 3_3:+29731528 Msa0448670:CDS
CTCAACAAACGAGGTGAGGG+TGG 0.629401 3_3:-29731633 None:intergenic
GTTAACACCAAAGAAGCCAT+GGG 0.640084 3_3:+29731309 Msa0448670:CDS
GATTGCTGAGTTCAATAACA+AGG 0.649486 3_3:-29727417 None:intergenic
ATCAAAAGCCTCAACAAACG+AGG 0.660997 3_3:-29731642 None:intergenic
GCACACTCGAGTTGATTGTG+AGG 0.665692 3_3:-29729863 None:intergenic
GTAAGCCATCCTATGATCAG+TGG 0.669763 3_3:-29727386 None:intergenic
TGTGAGGGAGAGAGATTCGG+TGG 0.689243 3_3:-29729847 None:intergenic
ACTTGAGAGATAGAAACCCA+TGG 0.689407 3_3:-29731325 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATAAAAAATATCACAA+CGG - chr3_3:29727710-29727729 None:intergenic 10.0%
!!! TTTTTTATAATTGAATTGAA+AGG + chr3_3:29727718-29727737 Msa0448670:intron 10.0%
!!! TTTTTATAATTGAATTGAAA+GGG + chr3_3:29727719-29727738 Msa0448670:intron 10.0%
!!! TATTGTGATTTTTTTTTTAA+TGG + chr3_3:29728185-29728204 Msa0448670:intron 10.0%
!! TAGAATAAAAAATTGATAAA+TGG - chr3_3:29728368-29728387 None:intergenic 10.0%
!!! AAAAAATTTAATGAAAGTTT+TGG - chr3_3:29728603-29728622 None:intergenic 10.0%
!!! AAACTTTTATACTAAAATTT+CGG + chr3_3:29728718-29728737 Msa0448670:intron 10.0%
!! AGTTATAATAAATTAATTGT+CGG + chr3_3:29730980-29730999 Msa0448670:intron 10.0%
!!! TACAATAATATCTAATTTTA+GGG - chr3_3:29731034-29731053 None:intergenic 10.0%
!! AATACTCTATAATAATAAAT+TGG - chr3_3:29731432-29731451 None:intergenic 10.0%
!! AAAATCACAATATCAAATTT+CGG - chr3_3:29728177-29728196 None:intergenic 15.0%
!! TATACATTAGTTAAAAAGTA+TGG + chr3_3:29729112-29729131 Msa0448670:intron 15.0%
!!! TCAATGATATTTTTTTTTTG+AGG + chr3_3:29729603-29729622 Msa0448670:intron 15.0%
!!! CAATGATATTTTTTTTTTGA+GGG + chr3_3:29729604-29729623 Msa0448670:intron 15.0%
!!! TTGAATATTATTTTAGCATA+TGG + chr3_3:29729933-29729952 Msa0448670:intron 15.0%
!!! TAATAACGTGAAAAATATTT+TGG + chr3_3:29730333-29730352 Msa0448670:intron 15.0%
!!! AATAACGTGAAAAATATTTT+GGG + chr3_3:29730334-29730353 Msa0448670:intron 15.0%
!! TTAAAAAAACAAAAGTTAGA+AGG - chr3_3:29730620-29730639 None:intergenic 15.0%
!!! CTATAAAGTGTTTTTTTTTT+TGG - chr3_3:29730860-29730879 None:intergenic 15.0%
!!! AAATGTTAGTAAAAGTTTTA+AGG - chr3_3:29730951-29730970 None:intergenic 15.0%
!!! TTAAAACTTTTACTAACATT+TGG + chr3_3:29730950-29730969 Msa0448670:intron 15.0%
!! GACAATTAATTTATTATAAC+TGG - chr3_3:29730981-29731000 None:intergenic 15.0%
!!! CTACAATAATATCTAATTTT+AGG - chr3_3:29731035-29731054 None:intergenic 15.0%
!!! ATTATAATAATTTCGTTTTG+TGG + chr3_3:29731270-29731289 Msa0448670:intron 15.0%
!! CAGATGCATTAAAATTAAAA+AGG - chr3_3:29728041-29728060 None:intergenic 20.0%
!!! CTTTTTAATTTTAATGCATC+TGG + chr3_3:29728039-29728058 Msa0448670:intron 20.0%
!!! ATCATTTTTTGTTGAAAACT+TGG + chr3_3:29728062-29728081 Msa0448670:intron 20.0%
!!! TACACAGTAAAATTTTTCAA+TGG - chr3_3:29728111-29728130 None:intergenic 20.0%
!!! AATCTTGATTTTACCATAAA+TGG - chr3_3:29728254-29728273 None:intergenic 20.0%
!!! AAATTGATAAATGGATTTCT+AGG - chr3_3:29728359-29728378 None:intergenic 20.0%
!! AGAGATTCATAATCTAAAAA+TGG - chr3_3:29729390-29729409 None:intergenic 20.0%
!! GAAACACATAAACATAAATT+TGG - chr3_3:29729494-29729513 None:intergenic 20.0%
!! ATTCATAAGAGTTACATTAA+TGG - chr3_3:29729709-29729728 None:intergenic 20.0%
!!! ATTGATTTTCATGTATTTTG+GGG - chr3_3:29729974-29729993 None:intergenic 20.0%
!!! GATTGATTTTCATGTATTTT+GGG - chr3_3:29729975-29729994 None:intergenic 20.0%
!!! TGATTGATTTTCATGTATTT+TGG - chr3_3:29729976-29729995 None:intergenic 20.0%
!!! GTTTTTTTTTTTATAGTGTG+TGG + chr3_3:29730088-29730107 Msa0448670:intron 20.0%
!! AGGAATGGATATAAATATAA+AGG - chr3_3:29730512-29730531 None:intergenic 20.0%
!!! TGTGAAAATATATTTTGCAA+TGG + chr3_3:29730713-29730732 Msa0448670:intron 20.0%
!! TTCACACAATAAACTAATTA+AGG + chr3_3:29730801-29730820 Msa0448670:intron 20.0%
!! TTTAAGGACAATTATAAGAA+AGG - chr3_3:29730935-29730954 None:intergenic 20.0%
! GACAATTCAAAGATGTTATT+AGG - chr3_3:29727634-29727653 None:intergenic 25.0%
! GACAATTCAAAGATGTTATT+AGG - chr3_3:29727634-29727653 None:intergenic 25.0%
! TAATTGCTTGGTTATTGAAA+GGG + chr3_3:29727917-29727936 Msa0448670:intron 25.0%
! TTTGTTGAAAACTTGGTATT+CGG + chr3_3:29728069-29728088 Msa0448670:intron 25.0%
!!! AAAATTTTTCAATGGTGTTC+CGG - chr3_3:29728103-29728122 None:intergenic 25.0%
! ATTATTATGTGTGCTCTTAA+AGG + chr3_3:29728331-29728350 Msa0448670:intron 25.0%
! ATTCAAATCTATCTTAAGAG+AGG - chr3_3:29728468-29728487 None:intergenic 25.0%
!!! TACTATTGCAGTATTTTTAC+AGG + chr3_3:29728857-29728876 Msa0448670:CDS 25.0%
!!! CTTGGACATGTATTTTAAAA+CGG - chr3_3:29728950-29728969 None:intergenic 25.0%
!!! ATTGGACATGTATTTTGAAA+CGG + chr3_3:29729171-29729190 Msa0448670:intron 25.0%
!! AATTTGGTGAAAGATTTACA+TGG - chr3_3:29729478-29729497 None:intergenic 25.0%
!!! TTGATTTTCATGTATTTTGG+GGG - chr3_3:29729973-29729992 None:intergenic 25.0%
! TTATTCTGAATTTCAATCCA+AGG + chr3_3:29730180-29730199 Msa0448670:intron 25.0%
!! GTTCTTTTGTGAAAATACTA+CGG + chr3_3:29730264-29730283 Msa0448670:intron 25.0%
! TACGGAGATATATAACTATT+TGG + chr3_3:29730282-29730301 Msa0448670:intron 25.0%
!!! TGAAAAATATTTTGGGTAAG+AGG + chr3_3:29730341-29730360 Msa0448670:intron 25.0%
!!! CTTTCCCATTTTTAACATAA+TGG - chr3_3:29730417-29730436 None:intergenic 25.0%
! GCTGCATATAATAAGAAAAA+AGG - chr3_3:29730482-29730501 None:intergenic 25.0%
! AAAAACAAAAGTTAGAAGGA+TGG - chr3_3:29730616-29730635 None:intergenic 25.0%
!! AAGGATTACTCTAGATTTTA+TGG + chr3_3:29730820-29730839 Msa0448670:intron 25.0%
!!! ATTGTCGGTAAAAGTTTTAA+CGG + chr3_3:29730995-29731014 Msa0448670:intron 25.0%
! TTTCAATCTTATCATACTCT+TGG + chr3_3:29731072-29731091 Msa0448670:intron 25.0%
!! TATGTTTTCAACTAGGTATT+TGG + chr3_3:29731095-29731114 Msa0448670:intron 25.0%
!! ATGTTTTCAACTAGGTATTT+GGG + chr3_3:29731096-29731115 Msa0448670:intron 25.0%
! TGACATATTACAAATAAGCA+TGG - chr3_3:29731250-29731269 None:intergenic 25.0%
! ATTATAAATGTTGCAACCTA+TGG - chr3_3:29731504-29731523 None:intergenic 25.0%
! AAAATTATATTAGACGACGA+TGG + chr3_3:29731528-29731547 Msa0448670:CDS 25.0%
!! AACGTTTGAAACAAGAAAAA+AGG - chr3_3:29731743-29731762 None:intergenic 25.0%
! AACTTCTTTCATCTTAAAAC+AGG + chr3_3:29731770-29731789 Msa0448670:intron 25.0%
! ACTTCTTTCATCTTAAAACA+GGG + chr3_3:29731771-29731790 Msa0448670:intron 25.0%
! ACGAAAAAAATTGATGAGAT+TGG - chr3_3:29731842-29731861 None:intergenic 25.0%
AGATAGATATGTAAGAACCT+TGG - chr3_3:29727476-29727495 None:intergenic 30.0%
!! TTCATTTTTAACGTCTCTCA+TGG + chr3_3:29727507-29727526 Msa0448670:intron 30.0%
!! TCATTTTTAACGTCTCTCAT+GGG + chr3_3:29727508-29727527 Msa0448670:intron 30.0%
TTCACAAGTAATCCAAATCT+TGG + chr3_3:29727532-29727551 Msa0448670:intron 30.0%
TGTTATTAGGTCTAGCAAAA+GGG - chr3_3:29727621-29727640 None:intergenic 30.0%
ATGTTATTAGGTCTAGCAAA+AGG - chr3_3:29727622-29727641 None:intergenic 30.0%
TGTTATTAGGTCTAGCAAAA+GGG - chr3_3:29727621-29727640 None:intergenic 30.0%
ATGTTATTAGGTCTAGCAAA+AGG - chr3_3:29727622-29727641 None:intergenic 30.0%
! CAAATTATTCTGGAGAACTT+GGG - chr3_3:29727866-29727885 None:intergenic 30.0%
! ACAAATTATTCTGGAGAACT+TGG - chr3_3:29727867-29727886 None:intergenic 30.0%
! TCTCCAGAATAATTTGTCTT+TGG + chr3_3:29727870-29727889 Msa0448670:intron 30.0%
CTTTCAATAACCAAGCAATT+AGG - chr3_3:29727918-29727937 None:intergenic 30.0%
CTAATTGCTTGGTTATTGAA+AGG + chr3_3:29727916-29727935 Msa0448670:intron 30.0%
TTCACTGTTTAGTGTATCAT+GGG + chr3_3:29727940-29727959 Msa0448670:intron 30.0%
ATCACAATATCAAATTTCGG+TGG - chr3_3:29728174-29728193 None:intergenic 30.0%
TTGTGATTAAGTCTGCTAAA+TGG - chr3_3:29728519-29728538 None:intergenic 30.0%
TTAGCAGACTTAATCACAAT+TGG + chr3_3:29728520-29728539 Msa0448670:intron 30.0%
CCAACAGTATTCCATAATAA+AGG - chr3_3:29728837-29728856 None:intergenic 30.0%
CCTTTATTATGGAATACTGT+TGG + chr3_3:29728834-29728853 Msa0448670:CDS 30.0%
!!! GACATGTATTTTAAAACGGA+GGG - chr3_3:29728946-29728965 None:intergenic 30.0%
ATAGTGCACATTGCAAAAAT+TGG + chr3_3:29729153-29729172 Msa0448670:intron 30.0%
GTATTTGATGAAACACACAA+TGG + chr3_3:29729298-29729317 Msa0448670:intron 30.0%
ATGAAACACACAATGGTATT+GGG + chr3_3:29729305-29729324 Msa0448670:intron 30.0%
TGAAATGATGATTGTTCTGA+AGG - chr3_3:29729367-29729386 None:intergenic 30.0%
ACTTAGAAAATAGATGGTGA+TGG + chr3_3:29729530-29729549 Msa0448670:intron 30.0%
GATTTGAACTTCTTTCTTAG+AGG - chr3_3:29729664-29729683 None:intergenic 30.0%
!! GGTCATTTTACAATTGTTTG+AGG - chr3_3:29729688-29729707 None:intergenic 30.0%
!!! TGAGTTGTGCTATTTTTTTC+AGG + chr3_3:29729795-29729814 Msa0448670:intron 30.0%
CAGGCCATTATGTTAAAAAT+GGG + chr3_3:29730410-29730429 Msa0448670:intron 30.0%
!!! TTAACTTGCTTGTCGTTTTA+AGG - chr3_3:29730532-29730551 None:intergenic 30.0%
! ACTTACAAATCCAACTTGTT+AGG + chr3_3:29731119-29731138 Msa0448670:intron 30.0%
ATGAACTAATCCTAACAAGT+TGG - chr3_3:29731132-29731151 None:intergenic 30.0%
TGCTTGTCTAATATGCAAAA+CGG + chr3_3:29731363-29731382 Msa0448670:CDS 30.0%
CATATACAACTTTCATTAGC+AGG - chr3_3:29731480-29731499 None:intergenic 30.0%
TGAAAGTTGTATATGTCCAT+AGG + chr3_3:29731485-29731504 Msa0448670:intron 30.0%
!!! GCTACAACAGAGAATTTTTT+TGG + chr3_3:29731567-29731586 Msa0448670:CDS 30.0%
TAACAACTTATCTTCCAAAC+AGG + chr3_3:29731806-29731825 Msa0448670:CDS 30.0%
! ACATCGTTTATAGCTTTTCC+TGG + chr3_3:29727343-29727362 Msa0448670:CDS 35.0%
GATTGCTGAGTTCAATAACA+AGG - chr3_3:29727420-29727439 None:intergenic 35.0%
TGTTATTGAACTCAGCAATC+CGG + chr3_3:29727420-29727439 Msa0448670:CDS 35.0%
!!! AGAGCATTTTCTCTAAGATC+CGG - chr3_3:29727442-29727461 None:intergenic 35.0%
ACAAGTAATCCAAATCTTGG+AGG + chr3_3:29727535-29727554 Msa0448670:intron 35.0%
AGGGTTCATTGTTATCACAA+CGG - chr3_3:29727656-29727675 None:intergenic 35.0%
GGAAATGAGACCTGATAATT+TGG + chr3_3:29727783-29727802 Msa0448670:intron 35.0%
! TGATAATTTGGAGTACGTCT+GGG + chr3_3:29727795-29727814 Msa0448670:intron 35.0%
TCTGGGAGGTAAATAAAATC+TGG + chr3_3:29727812-29727831 Msa0448670:intron 35.0%
AGAACTTGGGTTCAATTCTT+GGG - chr3_3:29727853-29727872 None:intergenic 35.0%
CCACCAAAGACAAATTATTC+TGG - chr3_3:29727876-29727895 None:intergenic 35.0%
! CCAGAATAATTTGTCTTTGG+TGG + chr3_3:29727873-29727892 Msa0448670:intron 35.0%
GTTCACTGTTTAGTGTATCA+TGG + chr3_3:29727939-29727958 Msa0448670:intron 35.0%
AAAACTTGGTATTCGGTCAA+AGG + chr3_3:29728076-29728095 Msa0448670:intron 35.0%
! TGTAGCCTCATTTAAAGTGA+AGG + chr3_3:29728127-29728146 Msa0448670:intron 35.0%
CTTTGCCTTCACTTTAAATG+AGG - chr3_3:29728135-29728154 None:intergenic 35.0%
AAGAGTTGGATTACATGTGT+GGG - chr3_3:29728412-29728431 None:intergenic 35.0%
ATGGATATAGTCTGACAATG+CGG - chr3_3:29728500-29728519 None:intergenic 35.0%
ACCAAGTTATTTGAGGAACT+TGG + chr3_3:29728810-29728829 Msa0448670:CDS 35.0%
TCCAAGTTCCTCAAATAACT+TGG - chr3_3:29728814-29728833 None:intergenic 35.0%
AGGAACTTGGACCTTTATTA+TGG + chr3_3:29728823-29728842 Msa0448670:CDS 35.0%
TTGCTGAAAATAAAGGTCAC+AGG - chr3_3:29728890-29728909 None:intergenic 35.0%
GCTAGAGTTGCTGAAAATAA+AGG - chr3_3:29728897-29728916 None:intergenic 35.0%
!!! GGACATGTATTTTAAAACGG+AGG - chr3_3:29728947-29728966 None:intergenic 35.0%
TAACGGTCAAAATTGTGCAT+TGG - chr3_3:29728991-29729010 None:intergenic 35.0%
!!! GACATGTATTTTGAAACGGA+TGG + chr3_3:29729175-29729194 Msa0448670:intron 35.0%
TTGTGCATGTATCTTACTTG+TGG + chr3_3:29729257-29729276 Msa0448670:intron 35.0%
GATGAAACACACAATGGTAT+TGG + chr3_3:29729304-29729323 Msa0448670:intron 35.0%
GAAGGATTGTAATACGACAA+AGG - chr3_3:29729349-29729368 None:intergenic 35.0%
AGATAGATAGATCGATCGAT+AGG - chr3_3:29729438-29729457 None:intergenic 35.0%
! TATGTGTTTCCAACTTTTCG+AGG + chr3_3:29729504-29729523 Msa0448670:intron 35.0%
! ATGTGTTTCCAACTTTTCGA+GGG + chr3_3:29729505-29729524 Msa0448670:intron 35.0%
AGGGAGACTTAGAAAATAGA+TGG + chr3_3:29729524-29729543 Msa0448670:intron 35.0%
CAATGTTCTAGCATTACTTC+AGG + chr3_3:29729885-29729904 Msa0448670:CDS 35.0%
GAAATGAGATCCTTGTATCA+GGG - chr3_3:29730121-29730140 None:intergenic 35.0%
AGAAATGAGATCCTTGTATC+AGG - chr3_3:29730122-29730141 None:intergenic 35.0%
ACAAGGATCTCATTTCTCAA+TGG + chr3_3:29730125-29730144 Msa0448670:CDS 35.0%
TTGGGTAAGAGGAATGAATT+TGG + chr3_3:29730352-29730371 Msa0448670:intron 35.0%
GAATTTGGATTCTCTTTGAC+CGG + chr3_3:29730367-29730386 Msa0448670:intron 35.0%
AAGTTATTGCAACCAAAAGC+CGG - chr3_3:29730389-29730408 None:intergenic 35.0%
!! TTTTGGTTGCAATAACTTGC+AGG + chr3_3:29730391-29730410 Msa0448670:intron 35.0%
GCAGGCCATTATGTTAAAAA+TGG + chr3_3:29730409-29730428 Msa0448670:intron 35.0%
!!! TTGCTTGTCGTTTTAAGGAA+TGG - chr3_3:29730527-29730546 None:intergenic 35.0%
! TAACACCCTTTGAGAATTTG+AGG + chr3_3:29730549-29730568 Msa0448670:CDS 35.0%
! AACACCCTTTGAGAATTTGA+GGG + chr3_3:29730550-29730569 Msa0448670:CDS 35.0%
! CTCTTGGTATGTTTTCAACT+AGG + chr3_3:29731088-29731107 Msa0448670:intron 35.0%
TTAGTTCATCTACATCACGA+AGG + chr3_3:29731143-29731162 Msa0448670:intron 35.0%
TAGTTCATCTACATCACGAA+GGG + chr3_3:29731144-29731163 Msa0448670:intron 35.0%
TTGTGGTATTTGATGTTCAC+AGG + chr3_3:29731287-29731306 Msa0448670:intron 35.0%
!! GCAGGTATTGGTAACAAAAA+TGG - chr3_3:29731462-29731481 None:intergenic 35.0%
CAACTTTCATTAGCAGGTAT+TGG - chr3_3:29731474-29731493 None:intergenic 35.0%
TATATTAGACGACGATGGTT+TGG + chr3_3:29731533-29731552 Msa0448670:CDS 35.0%
!!! TCGAGTTTTGAACATGATGT+TGG + chr3_3:29731596-29731615 Msa0448670:CDS 35.0%
CTTATCTCAAAATTGCAGGT+TGG + chr3_3:29731680-29731699 Msa0448670:intron 35.0%
TTTCGTGTAAGTACTTCTTG+TGG + chr3_3:29731856-29731875 Msa0448670:CDS 35.0%
TTCTTTGTTGAGAGCGATTG+AGG - chr3_3:29727319-29727338 None:intergenic 40.0%
! ATGATCAGTGGTGCTAGATT+GGG - chr3_3:29727377-29727396 None:intergenic 40.0%
! TATGATCAGTGGTGCTAGAT+TGG - chr3_3:29727378-29727397 None:intergenic 40.0%
AATCTAGCACCACTGATCAT+AGG + chr3_3:29727377-29727396 Msa0448670:CDS 40.0%
! AAAGGGTTCATTGTTGGTAG+AGG - chr3_3:29727604-29727623 None:intergenic 40.0%
CTAGCAAAAGGGTTCATTGT+TGG - chr3_3:29727610-29727629 None:intergenic 40.0%
TGTTTACGCTTCACTTCTCA+GGG + chr3_3:29727761-29727780 Msa0448670:intron 40.0%
CAGACGTACTCCAAATTATC+AGG - chr3_3:29727796-29727815 None:intergenic 40.0%
! CTGATAATTTGGAGTACGTC+TGG + chr3_3:29727794-29727813 Msa0448670:intron 40.0%
GAGAACTTGGGTTCAATTCT+TGG - chr3_3:29727854-29727873 None:intergenic 40.0%
GACGACGTCTAATCCATTTA+TGG + chr3_3:29728238-29728257 Msa0448670:intron 40.0%
CAAGAGTTGGATTACATGTG+TGG - chr3_3:29728413-29728432 None:intergenic 40.0%
CACACATGTAATCCAACTCT+TGG + chr3_3:29728411-29728430 Msa0448670:intron 40.0%
! TCAGAGCACCAAGTTATTTG+AGG + chr3_3:29728803-29728822 Msa0448670:intron 40.0%
GATAGATCGATCGATAGGTA+GGG - chr3_3:29729433-29729452 None:intergenic 40.0%
AGATAGATCGATCGATAGGT+AGG - chr3_3:29729434-29729453 None:intergenic 40.0%
GCAACCCTCAAATTCTCAAA+GGG - chr3_3:29730557-29730576 None:intergenic 40.0%
AGCAACCCTCAAATTCTCAA+AGG - chr3_3:29730558-29730577 None:intergenic 40.0%
! AATTTGAGGGTTGCTAGTCT+TGG + chr3_3:29730563-29730582 Msa0448670:CDS 40.0%
GTTAACACCAAAGAAGCCAT+GGG + chr3_3:29731309-29731328 Msa0448670:CDS 40.0%
ATAGAAACCCATGGCTTCTT+TGG - chr3_3:29731319-29731338 None:intergenic 40.0%
ACTTGAGAGATAGAAACCCA+TGG - chr3_3:29731328-29731347 None:intergenic 40.0%
ATCAAAAGCCTCAACAAACG+AGG - chr3_3:29731645-29731664 None:intergenic 40.0%
CTCGCTTATCTCAAAATTGC+AGG + chr3_3:29731676-29731695 Msa0448670:CDS 40.0%
CTAGATTGGGTAGAATCACC+AGG - chr3_3:29727364-29727383 None:intergenic 45.0%
TAGCACCACTGATCATAGGA+TGG + chr3_3:29727381-29727400 Msa0448670:CDS 45.0%
GTAAGCCATCCTATGATCAG+TGG - chr3_3:29727389-29727408 None:intergenic 45.0%
ATCACAACGCCTCCAAGATT+TGG - chr3_3:29727547-29727566 None:intergenic 45.0%
GTGTTTACGCTTCACTTCTC+AGG + chr3_3:29727760-29727779 Msa0448670:intron 45.0%
GTTTACGCTTCACTTCTCAG+GGG + chr3_3:29727762-29727781 Msa0448670:intron 45.0%
! TAATTTGGAGTACGTCTGGG+AGG + chr3_3:29727798-29727817 Msa0448670:intron 45.0%
ACTTGGGTTCAATTCTTGGG+TGG - chr3_3:29727850-29727869 None:intergenic 45.0%
ACCACTTGAGCCTAATTGCT+TGG + chr3_3:29727905-29727924 Msa0448670:intron 45.0%
ACCAAGCAATTAGGCTCAAG+TGG - chr3_3:29727909-29727928 None:intergenic 45.0%
TTGGTATTCGGTCAAAGGAC+CGG + chr3_3:29728081-29728100 Msa0448670:intron 45.0%
TTGGCAACTTCTCCAAGAGT+TGG - chr3_3:29728426-29728445 None:intergenic 45.0%
! AGCACGTTTGGTTTAACGCT+TGG - chr3_3:29728445-29728464 None:intergenic 45.0%
! TCTTAAGAGAGGAGCACGTT+TGG - chr3_3:29728457-29728476 None:intergenic 45.0%
CATCTGTGAAGTGGTTGACT+TGG - chr3_3:29728968-29728987 None:intergenic 45.0%
CTAAGTCTCCCTCGAAAAGT+TGG - chr3_3:29729516-29729535 None:intergenic 45.0%
!! AGATTCGGTGGTGAAAGAGT+AGG - chr3_3:29729838-29729857 None:intergenic 45.0%
GATTGTGAGGGAGAGAGATT+CGG - chr3_3:29729853-29729872 None:intergenic 45.0%
!! CACACTCGAGTTGATTGTGA+GGG - chr3_3:29729865-29729884 None:intergenic 45.0%
!! CAACTTGTTACATGCAGCCT+TGG - chr3_3:29730200-29730219 None:intergenic 45.0%
!! GATTCTCTTTGACCGGCTTT+TGG + chr3_3:29730374-29730393 Msa0448670:intron 45.0%
!! GTTGCTAGTCTTGGAGTCAT+TGG + chr3_3:29730572-29730591 Msa0448670:CDS 45.0%
GGTTAACACCAAAGAAGCCA+TGG + chr3_3:29731308-29731327 Msa0448670:intron 45.0%
TTGGCATCTTTGAGCCTGTT+TGG - chr3_3:29731823-29731842 None:intergenic 45.0%
!! TAGATAATTAAATATATTAA+CGG - chr3_3:29729008-29729027 None:intergenic 5.0%
!!! AATATATTTTTTATTGTTTA+AGG + chr3_3:29729726-29729745 Msa0448670:intron 5.0%
!!! ATATATTTTTTATTGTTTAA+GGG + chr3_3:29729727-29729746 Msa0448670:intron 5.0%
!!! ATATATATTTTTTTACATTA+AGG - chr3_3:29730037-29730056 None:intergenic 5.0%
TGCTCTCTATGTGCTCTCCA+AGG + chr3_3:29727456-29727475 Msa0448670:CDS 50.0%
! GTGCATTGGCATCTGTGAAG+TGG - chr3_3:29728977-29728996 None:intergenic 50.0%
GATCGATCGATAGGTAGGGA+GGG - chr3_3:29729429-29729448 None:intergenic 50.0%
AGATCGATCGATAGGTAGGG+AGG - chr3_3:29729430-29729449 None:intergenic 50.0%
!! GCACACTCGAGTTGATTGTG+AGG - chr3_3:29729866-29729885 None:intergenic 50.0%
TGGCATCTCACCCTGATACA+AGG + chr3_3:29730108-29730127 Msa0448670:CDS 50.0%
!! GCTAGTCTTGGAGTCATTGG+TGG + chr3_3:29730575-29730594 Msa0448670:CDS 50.0%
! AGTCATTGGTGGCTCGATGA+AGG + chr3_3:29730586-29730605 Msa0448670:CDS 50.0%
AGCCTCAACAAACGAGGTGA+GGG - chr3_3:29731639-29731658 None:intergenic 50.0%
AAGCCTCAACAAACGAGGTG+AGG - chr3_3:29731640-29731659 None:intergenic 50.0%
GATAGGTAGGGAGGGAGGAA+GGG - chr3_3:29729421-29729440 None:intergenic 55.0%
TGTGAGGGAGAGAGATTCGG+TGG - chr3_3:29729850-29729869 None:intergenic 55.0%
CTCAACAAACGAGGTGAGGG+TGG - chr3_3:29731636-29731655 None:intergenic 55.0%
! CACCCTCACCTCGTTTGTTG+AGG + chr3_3:29731634-29731653 Msa0448670:CDS 55.0%
CGATAGGTAGGGAGGGAGGA+AGG - chr3_3:29729422-29729441 None:intergenic 60.0%
CGATCGATAGGTAGGGAGGG+AGG - chr3_3:29729426-29729445 None:intergenic 60.0%
GGTAGGGAGGGAGGAAGGGA+GGG - chr3_3:29729417-29729436 None:intergenic 65.0%
AGGTAGGGAGGGAGGAAGGG+AGG - chr3_3:29729418-29729437 None:intergenic 65.0%
GGGAGGGAGGAAGGGAGGGA+GGG - chr3_3:29729413-29729432 None:intergenic 70.0%
AGGGAGGGAGGAAGGGAGGG+AGG - chr3_3:29729414-29729433 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 29727301 29731930 29727301 ID=Msa0448670;Name=Msa0448670
chr3_3 mRNA 29727301 29731930 29727301 ID=Msa0448670-mRNA-1;Parent=Msa0448670;Name=Msa0448670-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|1|1|1|8|0|304
chr3_3 exon 29727301 29727477 29727301 ID=Msa0448670-mRNA-1:exon:5587;Parent=Msa0448670-mRNA-1
chr3_3 exon 29728807 29728878 29728807 ID=Msa0448670-mRNA-1:exon:5588;Parent=Msa0448670-mRNA-1
chr3_3 exon 29729817 29729906 29729817 ID=Msa0448670-mRNA-1:exon:5589;Parent=Msa0448670-mRNA-1
chr3_3 exon 29730104 29730146 29730104 ID=Msa0448670-mRNA-1:exon:5590;Parent=Msa0448670-mRNA-1
chr3_3 exon 29730501 29730607 29730501 ID=Msa0448670-mRNA-1:exon:5591;Parent=Msa0448670-mRNA-1
chr3_3 exon 29731309 29731404 29731309 ID=Msa0448670-mRNA-1:exon:5592;Parent=Msa0448670-mRNA-1
chr3_3 exon 29731507 29731697 29731507 ID=Msa0448670-mRNA-1:exon:5593;Parent=Msa0448670-mRNA-1
chr3_3 exon 29731792 29731930 29731792 ID=Msa0448670-mRNA-1:exon:5594;Parent=Msa0448670-mRNA-1
chr3_3 CDS 29727301 29727477 29727301 ID=Msa0448670-mRNA-1:cds;Parent=Msa0448670-mRNA-1
chr3_3 CDS 29728807 29728878 29728807 ID=Msa0448670-mRNA-1:cds;Parent=Msa0448670-mRNA-1
chr3_3 CDS 29729817 29729906 29729817 ID=Msa0448670-mRNA-1:cds;Parent=Msa0448670-mRNA-1
chr3_3 CDS 29730104 29730146 29730104 ID=Msa0448670-mRNA-1:cds;Parent=Msa0448670-mRNA-1
chr3_3 CDS 29730501 29730607 29730501 ID=Msa0448670-mRNA-1:cds;Parent=Msa0448670-mRNA-1
chr3_3 CDS 29731309 29731404 29731309 ID=Msa0448670-mRNA-1:cds;Parent=Msa0448670-mRNA-1
chr3_3 CDS 29731507 29731697 29731507 ID=Msa0448670-mRNA-1:cds;Parent=Msa0448670-mRNA-1
chr3_3 CDS 29731792 29731930 29731792 ID=Msa0448670-mRNA-1:cds;Parent=Msa0448670-mRNA-1
Gene Sequence

>Msa0448670

ATGGCACACTTTACTCCTCAATCGCTCTCAACAAAGAACGATACATCGTTTATAGCTTTTCCTGGTGATTCTACCCAATCTAGCACCACTGATCATAGGATGGCTTACATGCAAAGCCTTGTTATTGAACTCAGCAATCCGGATCTTAGAGAAAATGCTCTCTATGTGCTCTCCAAGAGCACCAAGTTATTTGAGGAACTTGGACCTTTATTATGGAATACTGTTGGTACTATTGCAGTATTTTTACAGGAAATAATTTCAATATATCCTACTCTTTCACCACCGAATCTCTCTCCCTCACAATCAACTCGAGTGTGCAATGTTCTAGCATTACTTCAGTGTGTGGCATCTCACCCTGATACAAGGATCTCATTTCTCAATGCTAATATGCCTTTATATTTATATCCATTCCTTAAAACGACAAGCAAGTTAACACCCTTTGAGAATTTGAGGGTTGCTAGTCTTGGAGTCATTGGTGGCTCGATGAAGGTTAACACCAAAGAAGCCATGGGTTTCTATCTCTCAAGTGAGATAATTTCACTATGCTTGTCTAATATGCAAAACGGCAATGAATTGACAAAAATTGTTGCAACATTTATAATTCTGAAAATTATATTAGACGACGATGGTTTGGCTCGTGTTTGTGCTACAACAGAGAATTTTTTTGGAGTATGTCGAGTTTTGAACATGATGTTGGAAGATGTTGAGAATCCACCCTCACCTCGTTTGTTGAGGCTTTTGATTTCATGTTATTCTCGCTTATCTCAAAATTGCAGGGCTAAAGTTGCATTAACAACTTATCTTCCAAACAGGCTCAAAGATGCCAATCTCATCAATTTTTTTCGTGTAAGTACTTCTTGTGGTATAAATATAAATTTGATTCAGAATTTGTTTGATACACCTAATATGATATAA

Protein sequence

>Msa0448670

MAHFTPQSLSTKNDTSFIAFPGDSTQSSTTDHRMAYMQSLVIELSNPDLRENALYVLSKSTKLFEELGPLLWNTVGTIAVFLQEIISIYPTLSPPNLSPSQSTRVCNVLALLQCVASHPDTRISFLNANMPLYLYPFLKTTSKLTPFENLRVASLGVIGGSMKVNTKEAMGFYLSSEIISLCLSNMQNGNELTKIVATFIILKIILDDDGLARVCATTENFFGVCRVLNMMLEDVENPPSPRLLRLLISCYSRLSQNCRAKVALTTYLPNRLKDANLINFFRVSTSCGININLIQNLFDTPNMI*