Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0448670 | XP_003598636.1 | 95.390 | 282 | 13 | 0 | 1 | 282 | 1 | 282 | 0.0 | 546 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0448670 | sp|Q6P819|CNOT9_XENTR | 51.953 | 256 | 122 | 1 | 43 | 297 | 28 | 283 | 9.48e-88 | 267 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0448670 | Q2HW81 | 95.390 | 282 | 13 | 0 | 1 | 282 | 1 | 282 | 0.0 | 546 |
Gene ID | Type | Classification |
---|---|---|
Msa0448670 | TR | Rcd1-like |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0448670 | MtrunA17_Chr1g0177151 | 61.868 | 257 | 94 | 1 | 1 | 257 | 1 | 253 | 2.00e-114 | 331 |
Msa0448670 | MtrunA17_Chr7g0224601 | 63.273 | 275 | 97 | 2 | 12 | 282 | 2 | 276 | 1.82e-108 | 317 |
Msa0448670 | MtrunA17_Chr8g0392781 | 53.628 | 317 | 112 | 2 | 1 | 282 | 1 | 317 | 1.18e-106 | 315 |
Msa0448670 | MtrunA17_Chr3g0099561 | 61.224 | 245 | 95 | 0 | 38 | 282 | 26 | 270 | 7.49e-101 | 298 |
Msa0448670 | MtrunA17_Chr5g0444621 | 62.385 | 218 | 82 | 0 | 70 | 287 | 52 | 269 | 3.22e-90 | 270 |
Msa0448670 | MtrunA17_Chr6g0477171 | 62.814 | 199 | 74 | 0 | 59 | 257 | 45 | 243 | 1.53e-83 | 252 |
Msa0448670 | MtrunA17_Chr3g0083811 | 96.907 | 97 | 3 | 0 | 186 | 282 | 1 | 97 | 8.13e-63 | 194 |
Msa0448670 | MtrunA17_Chr3g0083821 | 73.874 | 111 | 29 | 0 | 54 | 164 | 10 | 120 | 2.83e-51 | 165 |
Msa0448670 | MtrunA17_Chr5g0444631 | 66.038 | 53 | 18 | 0 | 112 | 164 | 4 | 56 | 1.53e-18 | 78.2 |
Msa0448670 | MtrunA17_Chr6g0477181 | 61.017 | 59 | 23 | 0 | 1 | 59 | 1 | 59 | 1.40e-15 | 71.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0448670 | AT3G20800.1 | 56.929 | 267 | 110 | 1 | 21 | 282 | 17 | 283 | 3.41e-101 | 299 |
Msa0448670 | AT5G12980.1 | 55.510 | 245 | 109 | 0 | 31 | 275 | 28 | 272 | 3.95e-95 | 284 |
Msa0448670 | AT2G32550.2 | 34.884 | 258 | 151 | 6 | 53 | 297 | 67 | 320 | 2.41e-34 | 127 |
Msa0448670 | AT2G32550.3 | 35.223 | 247 | 143 | 6 | 64 | 297 | 39 | 281 | 6.55e-34 | 125 |
Msa0448670 | AT2G32550.1 | 34.934 | 229 | 132 | 6 | 82 | 297 | 2 | 226 | 5.67e-29 | 111 |
Find 52 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGGAACTTGGACCTTTATTA+TGG | 0.221177 | 3_3:+29728823 | Msa0448670:CDS |
ATATTAAATTATATCATATT+AGG | 0.243236 | 3_3:-29731916 | None:intergenic |
ATAGAAACCCATGGCTTCTT+TGG | 0.266786 | 3_3:-29731316 | None:intergenic |
CTCGCTTATCTCAAAATTGC+AGG | 0.298861 | 3_3:+29731676 | Msa0448670:CDS |
AGAAATGAGATCCTTGTATC+AGG | 0.301701 | 3_3:-29730119 | None:intergenic |
AGGAATGGATATAAATATAA+AGG | 0.360461 | 3_3:-29730509 | None:intergenic |
GTTGCTAGTCTTGGAGTCAT+TGG | 0.372727 | 3_3:+29730572 | Msa0448670:CDS |
TTGGCATCTTTGAGCCTGTT+TGG | 0.379455 | 3_3:-29731820 | None:intergenic |
CCAACAGTATTCCATAATAA+AGG | 0.383147 | 3_3:-29728834 | None:intergenic |
TATGATCAGTGGTGCTAGAT+TGG | 0.401740 | 3_3:-29727375 | None:intergenic |
TATATTAGACGACGATGGTT+TGG | 0.405062 | 3_3:+29731533 | Msa0448670:CDS |
CAATGTTCTAGCATTACTTC+AGG | 0.422671 | 3_3:+29729885 | Msa0448670:CDS |
TCAGAGCACCAAGTTATTTG+AGG | 0.428345 | 3_3:+29728803 | Msa0448670:intron |
TAACAACTTATCTTCCAAAC+AGG | 0.438040 | 3_3:+29731806 | Msa0448670:CDS |
TTCTTTGTTGAGAGCGATTG+AGG | 0.439462 | 3_3:-29727316 | None:intergenic |
GATTGTGAGGGAGAGAGATT+CGG | 0.440290 | 3_3:-29729850 | None:intergenic |
AATTTGAGGGTTGCTAGTCT+TGG | 0.451958 | 3_3:+29730563 | Msa0448670:CDS |
ATGATCAGTGGTGCTAGATT+GGG | 0.463771 | 3_3:-29727374 | None:intergenic |
AATCTAGCACCACTGATCAT+AGG | 0.464495 | 3_3:+29727377 | Msa0448670:CDS |
CACCCTCACCTCGTTTGTTG+AGG | 0.472935 | 3_3:+29731634 | Msa0448670:CDS |
TAACACCCTTTGAGAATTTG+AGG | 0.473351 | 3_3:+29730549 | Msa0448670:CDS |
TGTTATTGAACTCAGCAATC+CGG | 0.481393 | 3_3:+29727420 | Msa0448670:CDS |
ACCAAGTTATTTGAGGAACT+TGG | 0.485648 | 3_3:+29728810 | Msa0448670:CDS |
AGATTCGGTGGTGAAAGAGT+AGG | 0.488495 | 3_3:-29729835 | None:intergenic |
GCTAGTCTTGGAGTCATTGG+TGG | 0.491588 | 3_3:+29730575 | Msa0448670:CDS |
CCTTTATTATGGAATACTGT+TGG | 0.492405 | 3_3:+29728834 | Msa0448670:CDS |
TCCAAGTTCCTCAAATAACT+TGG | 0.522228 | 3_3:-29728811 | None:intergenic |
AACACCCTTTGAGAATTTGA+GGG | 0.530151 | 3_3:+29730550 | Msa0448670:CDS |
TGGCATCTCACCCTGATACA+AGG | 0.537570 | 3_3:+29730108 | Msa0448670:CDS |
AGTCATTGGTGGCTCGATGA+AGG | 0.546340 | 3_3:+29730586 | Msa0448670:CDS |
GCAACCCTCAAATTCTCAAA+GGG | 0.548073 | 3_3:-29730554 | None:intergenic |
AGCCTCAACAAACGAGGTGA+GGG | 0.559488 | 3_3:-29731636 | None:intergenic |
AGCAACCCTCAAATTCTCAA+AGG | 0.559876 | 3_3:-29730555 | None:intergenic |
TGCTTGTCTAATATGCAAAA+CGG | 0.562781 | 3_3:+29731363 | Msa0448670:CDS |
ACAAGGATCTCATTTCTCAA+TGG | 0.566776 | 3_3:+29730125 | Msa0448670:CDS |
AAGCCTCAACAAACGAGGTG+AGG | 0.569309 | 3_3:-29731637 | None:intergenic |
GGTTAACACCAAAGAAGCCA+TGG | 0.576851 | 3_3:+29731308 | Msa0448670:intron |
TGCTCTCTATGTGCTCTCCA+AGG | 0.584461 | 3_3:+29727456 | Msa0448670:CDS |
CTAGATTGGGTAGAATCACC+AGG | 0.589884 | 3_3:-29727361 | None:intergenic |
GAAATGAGATCCTTGTATCA+GGG | 0.596244 | 3_3:-29730118 | None:intergenic |
CACACTCGAGTTGATTGTGA+GGG | 0.603583 | 3_3:-29729862 | None:intergenic |
TTTCGTGTAAGTACTTCTTG+TGG | 0.613050 | 3_3:+29731856 | Msa0448670:CDS |
TAGCACCACTGATCATAGGA+TGG | 0.627844 | 3_3:+29727381 | Msa0448670:CDS |
AAAATTATATTAGACGACGA+TGG | 0.627877 | 3_3:+29731528 | Msa0448670:CDS |
CTCAACAAACGAGGTGAGGG+TGG | 0.629401 | 3_3:-29731633 | None:intergenic |
GTTAACACCAAAGAAGCCAT+GGG | 0.640084 | 3_3:+29731309 | Msa0448670:CDS |
GATTGCTGAGTTCAATAACA+AGG | 0.649486 | 3_3:-29727417 | None:intergenic |
ATCAAAAGCCTCAACAAACG+AGG | 0.660997 | 3_3:-29731642 | None:intergenic |
GCACACTCGAGTTGATTGTG+AGG | 0.665692 | 3_3:-29729863 | None:intergenic |
GTAAGCCATCCTATGATCAG+TGG | 0.669763 | 3_3:-29727386 | None:intergenic |
TGTGAGGGAGAGAGATTCGG+TGG | 0.689243 | 3_3:-29729847 | None:intergenic |
ACTTGAGAGATAGAAACCCA+TGG | 0.689407 | 3_3:-29731325 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTATAAAAAATATCACAA+CGG | - | chr3_3:29727710-29727729 | None:intergenic | 10.0% |
!!! | TTTTTTATAATTGAATTGAA+AGG | + | chr3_3:29727718-29727737 | Msa0448670:intron | 10.0% |
!!! | TTTTTATAATTGAATTGAAA+GGG | + | chr3_3:29727719-29727738 | Msa0448670:intron | 10.0% |
!!! | TATTGTGATTTTTTTTTTAA+TGG | + | chr3_3:29728185-29728204 | Msa0448670:intron | 10.0% |
!! | TAGAATAAAAAATTGATAAA+TGG | - | chr3_3:29728368-29728387 | None:intergenic | 10.0% |
!!! | AAAAAATTTAATGAAAGTTT+TGG | - | chr3_3:29728603-29728622 | None:intergenic | 10.0% |
!!! | AAACTTTTATACTAAAATTT+CGG | + | chr3_3:29728718-29728737 | Msa0448670:intron | 10.0% |
!! | AGTTATAATAAATTAATTGT+CGG | + | chr3_3:29730980-29730999 | Msa0448670:intron | 10.0% |
!!! | TACAATAATATCTAATTTTA+GGG | - | chr3_3:29731034-29731053 | None:intergenic | 10.0% |
!! | AATACTCTATAATAATAAAT+TGG | - | chr3_3:29731432-29731451 | None:intergenic | 10.0% |
!! | AAAATCACAATATCAAATTT+CGG | - | chr3_3:29728177-29728196 | None:intergenic | 15.0% |
!! | TATACATTAGTTAAAAAGTA+TGG | + | chr3_3:29729112-29729131 | Msa0448670:intron | 15.0% |
!!! | TCAATGATATTTTTTTTTTG+AGG | + | chr3_3:29729603-29729622 | Msa0448670:intron | 15.0% |
!!! | CAATGATATTTTTTTTTTGA+GGG | + | chr3_3:29729604-29729623 | Msa0448670:intron | 15.0% |
!!! | TTGAATATTATTTTAGCATA+TGG | + | chr3_3:29729933-29729952 | Msa0448670:intron | 15.0% |
!!! | TAATAACGTGAAAAATATTT+TGG | + | chr3_3:29730333-29730352 | Msa0448670:intron | 15.0% |
!!! | AATAACGTGAAAAATATTTT+GGG | + | chr3_3:29730334-29730353 | Msa0448670:intron | 15.0% |
!! | TTAAAAAAACAAAAGTTAGA+AGG | - | chr3_3:29730620-29730639 | None:intergenic | 15.0% |
!!! | CTATAAAGTGTTTTTTTTTT+TGG | - | chr3_3:29730860-29730879 | None:intergenic | 15.0% |
!!! | AAATGTTAGTAAAAGTTTTA+AGG | - | chr3_3:29730951-29730970 | None:intergenic | 15.0% |
!!! | TTAAAACTTTTACTAACATT+TGG | + | chr3_3:29730950-29730969 | Msa0448670:intron | 15.0% |
!! | GACAATTAATTTATTATAAC+TGG | - | chr3_3:29730981-29731000 | None:intergenic | 15.0% |
!!! | CTACAATAATATCTAATTTT+AGG | - | chr3_3:29731035-29731054 | None:intergenic | 15.0% |
!!! | ATTATAATAATTTCGTTTTG+TGG | + | chr3_3:29731270-29731289 | Msa0448670:intron | 15.0% |
!! | CAGATGCATTAAAATTAAAA+AGG | - | chr3_3:29728041-29728060 | None:intergenic | 20.0% |
!!! | CTTTTTAATTTTAATGCATC+TGG | + | chr3_3:29728039-29728058 | Msa0448670:intron | 20.0% |
!!! | ATCATTTTTTGTTGAAAACT+TGG | + | chr3_3:29728062-29728081 | Msa0448670:intron | 20.0% |
!!! | TACACAGTAAAATTTTTCAA+TGG | - | chr3_3:29728111-29728130 | None:intergenic | 20.0% |
!!! | AATCTTGATTTTACCATAAA+TGG | - | chr3_3:29728254-29728273 | None:intergenic | 20.0% |
!!! | AAATTGATAAATGGATTTCT+AGG | - | chr3_3:29728359-29728378 | None:intergenic | 20.0% |
!! | AGAGATTCATAATCTAAAAA+TGG | - | chr3_3:29729390-29729409 | None:intergenic | 20.0% |
!! | GAAACACATAAACATAAATT+TGG | - | chr3_3:29729494-29729513 | None:intergenic | 20.0% |
!! | ATTCATAAGAGTTACATTAA+TGG | - | chr3_3:29729709-29729728 | None:intergenic | 20.0% |
!!! | ATTGATTTTCATGTATTTTG+GGG | - | chr3_3:29729974-29729993 | None:intergenic | 20.0% |
!!! | GATTGATTTTCATGTATTTT+GGG | - | chr3_3:29729975-29729994 | None:intergenic | 20.0% |
!!! | TGATTGATTTTCATGTATTT+TGG | - | chr3_3:29729976-29729995 | None:intergenic | 20.0% |
!!! | GTTTTTTTTTTTATAGTGTG+TGG | + | chr3_3:29730088-29730107 | Msa0448670:intron | 20.0% |
!! | AGGAATGGATATAAATATAA+AGG | - | chr3_3:29730512-29730531 | None:intergenic | 20.0% |
!!! | TGTGAAAATATATTTTGCAA+TGG | + | chr3_3:29730713-29730732 | Msa0448670:intron | 20.0% |
!! | TTCACACAATAAACTAATTA+AGG | + | chr3_3:29730801-29730820 | Msa0448670:intron | 20.0% |
!! | TTTAAGGACAATTATAAGAA+AGG | - | chr3_3:29730935-29730954 | None:intergenic | 20.0% |
! | GACAATTCAAAGATGTTATT+AGG | - | chr3_3:29727634-29727653 | None:intergenic | 25.0% |
! | GACAATTCAAAGATGTTATT+AGG | - | chr3_3:29727634-29727653 | None:intergenic | 25.0% |
! | TAATTGCTTGGTTATTGAAA+GGG | + | chr3_3:29727917-29727936 | Msa0448670:intron | 25.0% |
! | TTTGTTGAAAACTTGGTATT+CGG | + | chr3_3:29728069-29728088 | Msa0448670:intron | 25.0% |
!!! | AAAATTTTTCAATGGTGTTC+CGG | - | chr3_3:29728103-29728122 | None:intergenic | 25.0% |
! | ATTATTATGTGTGCTCTTAA+AGG | + | chr3_3:29728331-29728350 | Msa0448670:intron | 25.0% |
! | ATTCAAATCTATCTTAAGAG+AGG | - | chr3_3:29728468-29728487 | None:intergenic | 25.0% |
!!! | TACTATTGCAGTATTTTTAC+AGG | + | chr3_3:29728857-29728876 | Msa0448670:CDS | 25.0% |
!!! | CTTGGACATGTATTTTAAAA+CGG | - | chr3_3:29728950-29728969 | None:intergenic | 25.0% |
!!! | ATTGGACATGTATTTTGAAA+CGG | + | chr3_3:29729171-29729190 | Msa0448670:intron | 25.0% |
!! | AATTTGGTGAAAGATTTACA+TGG | - | chr3_3:29729478-29729497 | None:intergenic | 25.0% |
!!! | TTGATTTTCATGTATTTTGG+GGG | - | chr3_3:29729973-29729992 | None:intergenic | 25.0% |
! | TTATTCTGAATTTCAATCCA+AGG | + | chr3_3:29730180-29730199 | Msa0448670:intron | 25.0% |
!! | GTTCTTTTGTGAAAATACTA+CGG | + | chr3_3:29730264-29730283 | Msa0448670:intron | 25.0% |
! | TACGGAGATATATAACTATT+TGG | + | chr3_3:29730282-29730301 | Msa0448670:intron | 25.0% |
!!! | TGAAAAATATTTTGGGTAAG+AGG | + | chr3_3:29730341-29730360 | Msa0448670:intron | 25.0% |
!!! | CTTTCCCATTTTTAACATAA+TGG | - | chr3_3:29730417-29730436 | None:intergenic | 25.0% |
! | GCTGCATATAATAAGAAAAA+AGG | - | chr3_3:29730482-29730501 | None:intergenic | 25.0% |
! | AAAAACAAAAGTTAGAAGGA+TGG | - | chr3_3:29730616-29730635 | None:intergenic | 25.0% |
!! | AAGGATTACTCTAGATTTTA+TGG | + | chr3_3:29730820-29730839 | Msa0448670:intron | 25.0% |
!!! | ATTGTCGGTAAAAGTTTTAA+CGG | + | chr3_3:29730995-29731014 | Msa0448670:intron | 25.0% |
! | TTTCAATCTTATCATACTCT+TGG | + | chr3_3:29731072-29731091 | Msa0448670:intron | 25.0% |
!! | TATGTTTTCAACTAGGTATT+TGG | + | chr3_3:29731095-29731114 | Msa0448670:intron | 25.0% |
!! | ATGTTTTCAACTAGGTATTT+GGG | + | chr3_3:29731096-29731115 | Msa0448670:intron | 25.0% |
! | TGACATATTACAAATAAGCA+TGG | - | chr3_3:29731250-29731269 | None:intergenic | 25.0% |
! | ATTATAAATGTTGCAACCTA+TGG | - | chr3_3:29731504-29731523 | None:intergenic | 25.0% |
! | AAAATTATATTAGACGACGA+TGG | + | chr3_3:29731528-29731547 | Msa0448670:CDS | 25.0% |
!! | AACGTTTGAAACAAGAAAAA+AGG | - | chr3_3:29731743-29731762 | None:intergenic | 25.0% |
! | AACTTCTTTCATCTTAAAAC+AGG | + | chr3_3:29731770-29731789 | Msa0448670:intron | 25.0% |
! | ACTTCTTTCATCTTAAAACA+GGG | + | chr3_3:29731771-29731790 | Msa0448670:intron | 25.0% |
! | ACGAAAAAAATTGATGAGAT+TGG | - | chr3_3:29731842-29731861 | None:intergenic | 25.0% |
AGATAGATATGTAAGAACCT+TGG | - | chr3_3:29727476-29727495 | None:intergenic | 30.0% | |
!! | TTCATTTTTAACGTCTCTCA+TGG | + | chr3_3:29727507-29727526 | Msa0448670:intron | 30.0% |
!! | TCATTTTTAACGTCTCTCAT+GGG | + | chr3_3:29727508-29727527 | Msa0448670:intron | 30.0% |
TTCACAAGTAATCCAAATCT+TGG | + | chr3_3:29727532-29727551 | Msa0448670:intron | 30.0% | |
TGTTATTAGGTCTAGCAAAA+GGG | - | chr3_3:29727621-29727640 | None:intergenic | 30.0% | |
ATGTTATTAGGTCTAGCAAA+AGG | - | chr3_3:29727622-29727641 | None:intergenic | 30.0% | |
TGTTATTAGGTCTAGCAAAA+GGG | - | chr3_3:29727621-29727640 | None:intergenic | 30.0% | |
ATGTTATTAGGTCTAGCAAA+AGG | - | chr3_3:29727622-29727641 | None:intergenic | 30.0% | |
! | CAAATTATTCTGGAGAACTT+GGG | - | chr3_3:29727866-29727885 | None:intergenic | 30.0% |
! | ACAAATTATTCTGGAGAACT+TGG | - | chr3_3:29727867-29727886 | None:intergenic | 30.0% |
! | TCTCCAGAATAATTTGTCTT+TGG | + | chr3_3:29727870-29727889 | Msa0448670:intron | 30.0% |
CTTTCAATAACCAAGCAATT+AGG | - | chr3_3:29727918-29727937 | None:intergenic | 30.0% | |
CTAATTGCTTGGTTATTGAA+AGG | + | chr3_3:29727916-29727935 | Msa0448670:intron | 30.0% | |
TTCACTGTTTAGTGTATCAT+GGG | + | chr3_3:29727940-29727959 | Msa0448670:intron | 30.0% | |
ATCACAATATCAAATTTCGG+TGG | - | chr3_3:29728174-29728193 | None:intergenic | 30.0% | |
TTGTGATTAAGTCTGCTAAA+TGG | - | chr3_3:29728519-29728538 | None:intergenic | 30.0% | |
TTAGCAGACTTAATCACAAT+TGG | + | chr3_3:29728520-29728539 | Msa0448670:intron | 30.0% | |
CCAACAGTATTCCATAATAA+AGG | - | chr3_3:29728837-29728856 | None:intergenic | 30.0% | |
CCTTTATTATGGAATACTGT+TGG | + | chr3_3:29728834-29728853 | Msa0448670:CDS | 30.0% | |
!!! | GACATGTATTTTAAAACGGA+GGG | - | chr3_3:29728946-29728965 | None:intergenic | 30.0% |
ATAGTGCACATTGCAAAAAT+TGG | + | chr3_3:29729153-29729172 | Msa0448670:intron | 30.0% | |
GTATTTGATGAAACACACAA+TGG | + | chr3_3:29729298-29729317 | Msa0448670:intron | 30.0% | |
ATGAAACACACAATGGTATT+GGG | + | chr3_3:29729305-29729324 | Msa0448670:intron | 30.0% | |
TGAAATGATGATTGTTCTGA+AGG | - | chr3_3:29729367-29729386 | None:intergenic | 30.0% | |
ACTTAGAAAATAGATGGTGA+TGG | + | chr3_3:29729530-29729549 | Msa0448670:intron | 30.0% | |
GATTTGAACTTCTTTCTTAG+AGG | - | chr3_3:29729664-29729683 | None:intergenic | 30.0% | |
!! | GGTCATTTTACAATTGTTTG+AGG | - | chr3_3:29729688-29729707 | None:intergenic | 30.0% |
!!! | TGAGTTGTGCTATTTTTTTC+AGG | + | chr3_3:29729795-29729814 | Msa0448670:intron | 30.0% |
CAGGCCATTATGTTAAAAAT+GGG | + | chr3_3:29730410-29730429 | Msa0448670:intron | 30.0% | |
!!! | TTAACTTGCTTGTCGTTTTA+AGG | - | chr3_3:29730532-29730551 | None:intergenic | 30.0% |
! | ACTTACAAATCCAACTTGTT+AGG | + | chr3_3:29731119-29731138 | Msa0448670:intron | 30.0% |
ATGAACTAATCCTAACAAGT+TGG | - | chr3_3:29731132-29731151 | None:intergenic | 30.0% | |
TGCTTGTCTAATATGCAAAA+CGG | + | chr3_3:29731363-29731382 | Msa0448670:CDS | 30.0% | |
CATATACAACTTTCATTAGC+AGG | - | chr3_3:29731480-29731499 | None:intergenic | 30.0% | |
TGAAAGTTGTATATGTCCAT+AGG | + | chr3_3:29731485-29731504 | Msa0448670:intron | 30.0% | |
!!! | GCTACAACAGAGAATTTTTT+TGG | + | chr3_3:29731567-29731586 | Msa0448670:CDS | 30.0% |
TAACAACTTATCTTCCAAAC+AGG | + | chr3_3:29731806-29731825 | Msa0448670:CDS | 30.0% | |
! | ACATCGTTTATAGCTTTTCC+TGG | + | chr3_3:29727343-29727362 | Msa0448670:CDS | 35.0% |
GATTGCTGAGTTCAATAACA+AGG | - | chr3_3:29727420-29727439 | None:intergenic | 35.0% | |
TGTTATTGAACTCAGCAATC+CGG | + | chr3_3:29727420-29727439 | Msa0448670:CDS | 35.0% | |
!!! | AGAGCATTTTCTCTAAGATC+CGG | - | chr3_3:29727442-29727461 | None:intergenic | 35.0% |
ACAAGTAATCCAAATCTTGG+AGG | + | chr3_3:29727535-29727554 | Msa0448670:intron | 35.0% | |
AGGGTTCATTGTTATCACAA+CGG | - | chr3_3:29727656-29727675 | None:intergenic | 35.0% | |
GGAAATGAGACCTGATAATT+TGG | + | chr3_3:29727783-29727802 | Msa0448670:intron | 35.0% | |
! | TGATAATTTGGAGTACGTCT+GGG | + | chr3_3:29727795-29727814 | Msa0448670:intron | 35.0% |
TCTGGGAGGTAAATAAAATC+TGG | + | chr3_3:29727812-29727831 | Msa0448670:intron | 35.0% | |
AGAACTTGGGTTCAATTCTT+GGG | - | chr3_3:29727853-29727872 | None:intergenic | 35.0% | |
CCACCAAAGACAAATTATTC+TGG | - | chr3_3:29727876-29727895 | None:intergenic | 35.0% | |
! | CCAGAATAATTTGTCTTTGG+TGG | + | chr3_3:29727873-29727892 | Msa0448670:intron | 35.0% |
GTTCACTGTTTAGTGTATCA+TGG | + | chr3_3:29727939-29727958 | Msa0448670:intron | 35.0% | |
AAAACTTGGTATTCGGTCAA+AGG | + | chr3_3:29728076-29728095 | Msa0448670:intron | 35.0% | |
! | TGTAGCCTCATTTAAAGTGA+AGG | + | chr3_3:29728127-29728146 | Msa0448670:intron | 35.0% |
CTTTGCCTTCACTTTAAATG+AGG | - | chr3_3:29728135-29728154 | None:intergenic | 35.0% | |
AAGAGTTGGATTACATGTGT+GGG | - | chr3_3:29728412-29728431 | None:intergenic | 35.0% | |
ATGGATATAGTCTGACAATG+CGG | - | chr3_3:29728500-29728519 | None:intergenic | 35.0% | |
ACCAAGTTATTTGAGGAACT+TGG | + | chr3_3:29728810-29728829 | Msa0448670:CDS | 35.0% | |
TCCAAGTTCCTCAAATAACT+TGG | - | chr3_3:29728814-29728833 | None:intergenic | 35.0% | |
AGGAACTTGGACCTTTATTA+TGG | + | chr3_3:29728823-29728842 | Msa0448670:CDS | 35.0% | |
TTGCTGAAAATAAAGGTCAC+AGG | - | chr3_3:29728890-29728909 | None:intergenic | 35.0% | |
GCTAGAGTTGCTGAAAATAA+AGG | - | chr3_3:29728897-29728916 | None:intergenic | 35.0% | |
!!! | GGACATGTATTTTAAAACGG+AGG | - | chr3_3:29728947-29728966 | None:intergenic | 35.0% |
TAACGGTCAAAATTGTGCAT+TGG | - | chr3_3:29728991-29729010 | None:intergenic | 35.0% | |
!!! | GACATGTATTTTGAAACGGA+TGG | + | chr3_3:29729175-29729194 | Msa0448670:intron | 35.0% |
TTGTGCATGTATCTTACTTG+TGG | + | chr3_3:29729257-29729276 | Msa0448670:intron | 35.0% | |
GATGAAACACACAATGGTAT+TGG | + | chr3_3:29729304-29729323 | Msa0448670:intron | 35.0% | |
GAAGGATTGTAATACGACAA+AGG | - | chr3_3:29729349-29729368 | None:intergenic | 35.0% | |
AGATAGATAGATCGATCGAT+AGG | - | chr3_3:29729438-29729457 | None:intergenic | 35.0% | |
! | TATGTGTTTCCAACTTTTCG+AGG | + | chr3_3:29729504-29729523 | Msa0448670:intron | 35.0% |
! | ATGTGTTTCCAACTTTTCGA+GGG | + | chr3_3:29729505-29729524 | Msa0448670:intron | 35.0% |
AGGGAGACTTAGAAAATAGA+TGG | + | chr3_3:29729524-29729543 | Msa0448670:intron | 35.0% | |
CAATGTTCTAGCATTACTTC+AGG | + | chr3_3:29729885-29729904 | Msa0448670:CDS | 35.0% | |
GAAATGAGATCCTTGTATCA+GGG | - | chr3_3:29730121-29730140 | None:intergenic | 35.0% | |
AGAAATGAGATCCTTGTATC+AGG | - | chr3_3:29730122-29730141 | None:intergenic | 35.0% | |
ACAAGGATCTCATTTCTCAA+TGG | + | chr3_3:29730125-29730144 | Msa0448670:CDS | 35.0% | |
TTGGGTAAGAGGAATGAATT+TGG | + | chr3_3:29730352-29730371 | Msa0448670:intron | 35.0% | |
GAATTTGGATTCTCTTTGAC+CGG | + | chr3_3:29730367-29730386 | Msa0448670:intron | 35.0% | |
AAGTTATTGCAACCAAAAGC+CGG | - | chr3_3:29730389-29730408 | None:intergenic | 35.0% | |
!! | TTTTGGTTGCAATAACTTGC+AGG | + | chr3_3:29730391-29730410 | Msa0448670:intron | 35.0% |
GCAGGCCATTATGTTAAAAA+TGG | + | chr3_3:29730409-29730428 | Msa0448670:intron | 35.0% | |
!!! | TTGCTTGTCGTTTTAAGGAA+TGG | - | chr3_3:29730527-29730546 | None:intergenic | 35.0% |
! | TAACACCCTTTGAGAATTTG+AGG | + | chr3_3:29730549-29730568 | Msa0448670:CDS | 35.0% |
! | AACACCCTTTGAGAATTTGA+GGG | + | chr3_3:29730550-29730569 | Msa0448670:CDS | 35.0% |
! | CTCTTGGTATGTTTTCAACT+AGG | + | chr3_3:29731088-29731107 | Msa0448670:intron | 35.0% |
TTAGTTCATCTACATCACGA+AGG | + | chr3_3:29731143-29731162 | Msa0448670:intron | 35.0% | |
TAGTTCATCTACATCACGAA+GGG | + | chr3_3:29731144-29731163 | Msa0448670:intron | 35.0% | |
TTGTGGTATTTGATGTTCAC+AGG | + | chr3_3:29731287-29731306 | Msa0448670:intron | 35.0% | |
!! | GCAGGTATTGGTAACAAAAA+TGG | - | chr3_3:29731462-29731481 | None:intergenic | 35.0% |
CAACTTTCATTAGCAGGTAT+TGG | - | chr3_3:29731474-29731493 | None:intergenic | 35.0% | |
TATATTAGACGACGATGGTT+TGG | + | chr3_3:29731533-29731552 | Msa0448670:CDS | 35.0% | |
!!! | TCGAGTTTTGAACATGATGT+TGG | + | chr3_3:29731596-29731615 | Msa0448670:CDS | 35.0% |
CTTATCTCAAAATTGCAGGT+TGG | + | chr3_3:29731680-29731699 | Msa0448670:intron | 35.0% | |
TTTCGTGTAAGTACTTCTTG+TGG | + | chr3_3:29731856-29731875 | Msa0448670:CDS | 35.0% | |
TTCTTTGTTGAGAGCGATTG+AGG | - | chr3_3:29727319-29727338 | None:intergenic | 40.0% | |
! | ATGATCAGTGGTGCTAGATT+GGG | - | chr3_3:29727377-29727396 | None:intergenic | 40.0% |
! | TATGATCAGTGGTGCTAGAT+TGG | - | chr3_3:29727378-29727397 | None:intergenic | 40.0% |
AATCTAGCACCACTGATCAT+AGG | + | chr3_3:29727377-29727396 | Msa0448670:CDS | 40.0% | |
! | AAAGGGTTCATTGTTGGTAG+AGG | - | chr3_3:29727604-29727623 | None:intergenic | 40.0% |
CTAGCAAAAGGGTTCATTGT+TGG | - | chr3_3:29727610-29727629 | None:intergenic | 40.0% | |
TGTTTACGCTTCACTTCTCA+GGG | + | chr3_3:29727761-29727780 | Msa0448670:intron | 40.0% | |
CAGACGTACTCCAAATTATC+AGG | - | chr3_3:29727796-29727815 | None:intergenic | 40.0% | |
! | CTGATAATTTGGAGTACGTC+TGG | + | chr3_3:29727794-29727813 | Msa0448670:intron | 40.0% |
GAGAACTTGGGTTCAATTCT+TGG | - | chr3_3:29727854-29727873 | None:intergenic | 40.0% | |
GACGACGTCTAATCCATTTA+TGG | + | chr3_3:29728238-29728257 | Msa0448670:intron | 40.0% | |
CAAGAGTTGGATTACATGTG+TGG | - | chr3_3:29728413-29728432 | None:intergenic | 40.0% | |
CACACATGTAATCCAACTCT+TGG | + | chr3_3:29728411-29728430 | Msa0448670:intron | 40.0% | |
! | TCAGAGCACCAAGTTATTTG+AGG | + | chr3_3:29728803-29728822 | Msa0448670:intron | 40.0% |
GATAGATCGATCGATAGGTA+GGG | - | chr3_3:29729433-29729452 | None:intergenic | 40.0% | |
AGATAGATCGATCGATAGGT+AGG | - | chr3_3:29729434-29729453 | None:intergenic | 40.0% | |
GCAACCCTCAAATTCTCAAA+GGG | - | chr3_3:29730557-29730576 | None:intergenic | 40.0% | |
AGCAACCCTCAAATTCTCAA+AGG | - | chr3_3:29730558-29730577 | None:intergenic | 40.0% | |
! | AATTTGAGGGTTGCTAGTCT+TGG | + | chr3_3:29730563-29730582 | Msa0448670:CDS | 40.0% |
GTTAACACCAAAGAAGCCAT+GGG | + | chr3_3:29731309-29731328 | Msa0448670:CDS | 40.0% | |
ATAGAAACCCATGGCTTCTT+TGG | - | chr3_3:29731319-29731338 | None:intergenic | 40.0% | |
ACTTGAGAGATAGAAACCCA+TGG | - | chr3_3:29731328-29731347 | None:intergenic | 40.0% | |
ATCAAAAGCCTCAACAAACG+AGG | - | chr3_3:29731645-29731664 | None:intergenic | 40.0% | |
CTCGCTTATCTCAAAATTGC+AGG | + | chr3_3:29731676-29731695 | Msa0448670:CDS | 40.0% | |
CTAGATTGGGTAGAATCACC+AGG | - | chr3_3:29727364-29727383 | None:intergenic | 45.0% | |
TAGCACCACTGATCATAGGA+TGG | + | chr3_3:29727381-29727400 | Msa0448670:CDS | 45.0% | |
GTAAGCCATCCTATGATCAG+TGG | - | chr3_3:29727389-29727408 | None:intergenic | 45.0% | |
ATCACAACGCCTCCAAGATT+TGG | - | chr3_3:29727547-29727566 | None:intergenic | 45.0% | |
GTGTTTACGCTTCACTTCTC+AGG | + | chr3_3:29727760-29727779 | Msa0448670:intron | 45.0% | |
GTTTACGCTTCACTTCTCAG+GGG | + | chr3_3:29727762-29727781 | Msa0448670:intron | 45.0% | |
! | TAATTTGGAGTACGTCTGGG+AGG | + | chr3_3:29727798-29727817 | Msa0448670:intron | 45.0% |
ACTTGGGTTCAATTCTTGGG+TGG | - | chr3_3:29727850-29727869 | None:intergenic | 45.0% | |
ACCACTTGAGCCTAATTGCT+TGG | + | chr3_3:29727905-29727924 | Msa0448670:intron | 45.0% | |
ACCAAGCAATTAGGCTCAAG+TGG | - | chr3_3:29727909-29727928 | None:intergenic | 45.0% | |
TTGGTATTCGGTCAAAGGAC+CGG | + | chr3_3:29728081-29728100 | Msa0448670:intron | 45.0% | |
TTGGCAACTTCTCCAAGAGT+TGG | - | chr3_3:29728426-29728445 | None:intergenic | 45.0% | |
! | AGCACGTTTGGTTTAACGCT+TGG | - | chr3_3:29728445-29728464 | None:intergenic | 45.0% |
! | TCTTAAGAGAGGAGCACGTT+TGG | - | chr3_3:29728457-29728476 | None:intergenic | 45.0% |
CATCTGTGAAGTGGTTGACT+TGG | - | chr3_3:29728968-29728987 | None:intergenic | 45.0% | |
CTAAGTCTCCCTCGAAAAGT+TGG | - | chr3_3:29729516-29729535 | None:intergenic | 45.0% | |
!! | AGATTCGGTGGTGAAAGAGT+AGG | - | chr3_3:29729838-29729857 | None:intergenic | 45.0% |
GATTGTGAGGGAGAGAGATT+CGG | - | chr3_3:29729853-29729872 | None:intergenic | 45.0% | |
!! | CACACTCGAGTTGATTGTGA+GGG | - | chr3_3:29729865-29729884 | None:intergenic | 45.0% |
!! | CAACTTGTTACATGCAGCCT+TGG | - | chr3_3:29730200-29730219 | None:intergenic | 45.0% |
!! | GATTCTCTTTGACCGGCTTT+TGG | + | chr3_3:29730374-29730393 | Msa0448670:intron | 45.0% |
!! | GTTGCTAGTCTTGGAGTCAT+TGG | + | chr3_3:29730572-29730591 | Msa0448670:CDS | 45.0% |
GGTTAACACCAAAGAAGCCA+TGG | + | chr3_3:29731308-29731327 | Msa0448670:intron | 45.0% | |
TTGGCATCTTTGAGCCTGTT+TGG | - | chr3_3:29731823-29731842 | None:intergenic | 45.0% | |
!! | TAGATAATTAAATATATTAA+CGG | - | chr3_3:29729008-29729027 | None:intergenic | 5.0% |
!!! | AATATATTTTTTATTGTTTA+AGG | + | chr3_3:29729726-29729745 | Msa0448670:intron | 5.0% |
!!! | ATATATTTTTTATTGTTTAA+GGG | + | chr3_3:29729727-29729746 | Msa0448670:intron | 5.0% |
!!! | ATATATATTTTTTTACATTA+AGG | - | chr3_3:29730037-29730056 | None:intergenic | 5.0% |
TGCTCTCTATGTGCTCTCCA+AGG | + | chr3_3:29727456-29727475 | Msa0448670:CDS | 50.0% | |
! | GTGCATTGGCATCTGTGAAG+TGG | - | chr3_3:29728977-29728996 | None:intergenic | 50.0% |
GATCGATCGATAGGTAGGGA+GGG | - | chr3_3:29729429-29729448 | None:intergenic | 50.0% | |
AGATCGATCGATAGGTAGGG+AGG | - | chr3_3:29729430-29729449 | None:intergenic | 50.0% | |
!! | GCACACTCGAGTTGATTGTG+AGG | - | chr3_3:29729866-29729885 | None:intergenic | 50.0% |
TGGCATCTCACCCTGATACA+AGG | + | chr3_3:29730108-29730127 | Msa0448670:CDS | 50.0% | |
!! | GCTAGTCTTGGAGTCATTGG+TGG | + | chr3_3:29730575-29730594 | Msa0448670:CDS | 50.0% |
! | AGTCATTGGTGGCTCGATGA+AGG | + | chr3_3:29730586-29730605 | Msa0448670:CDS | 50.0% |
AGCCTCAACAAACGAGGTGA+GGG | - | chr3_3:29731639-29731658 | None:intergenic | 50.0% | |
AAGCCTCAACAAACGAGGTG+AGG | - | chr3_3:29731640-29731659 | None:intergenic | 50.0% | |
GATAGGTAGGGAGGGAGGAA+GGG | - | chr3_3:29729421-29729440 | None:intergenic | 55.0% | |
TGTGAGGGAGAGAGATTCGG+TGG | - | chr3_3:29729850-29729869 | None:intergenic | 55.0% | |
CTCAACAAACGAGGTGAGGG+TGG | - | chr3_3:29731636-29731655 | None:intergenic | 55.0% | |
! | CACCCTCACCTCGTTTGTTG+AGG | + | chr3_3:29731634-29731653 | Msa0448670:CDS | 55.0% |
CGATAGGTAGGGAGGGAGGA+AGG | - | chr3_3:29729422-29729441 | None:intergenic | 60.0% | |
CGATCGATAGGTAGGGAGGG+AGG | - | chr3_3:29729426-29729445 | None:intergenic | 60.0% | |
GGTAGGGAGGGAGGAAGGGA+GGG | - | chr3_3:29729417-29729436 | None:intergenic | 65.0% | |
AGGTAGGGAGGGAGGAAGGG+AGG | - | chr3_3:29729418-29729437 | None:intergenic | 65.0% | |
GGGAGGGAGGAAGGGAGGGA+GGG | - | chr3_3:29729413-29729432 | None:intergenic | 70.0% | |
AGGGAGGGAGGAAGGGAGGG+AGG | - | chr3_3:29729414-29729433 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_3 | gene | 29727301 | 29731930 | 29727301 | ID=Msa0448670;Name=Msa0448670 |
chr3_3 | mRNA | 29727301 | 29731930 | 29727301 | ID=Msa0448670-mRNA-1;Parent=Msa0448670;Name=Msa0448670-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|1|1|1|8|0|304 |
chr3_3 | exon | 29727301 | 29727477 | 29727301 | ID=Msa0448670-mRNA-1:exon:5587;Parent=Msa0448670-mRNA-1 |
chr3_3 | exon | 29728807 | 29728878 | 29728807 | ID=Msa0448670-mRNA-1:exon:5588;Parent=Msa0448670-mRNA-1 |
chr3_3 | exon | 29729817 | 29729906 | 29729817 | ID=Msa0448670-mRNA-1:exon:5589;Parent=Msa0448670-mRNA-1 |
chr3_3 | exon | 29730104 | 29730146 | 29730104 | ID=Msa0448670-mRNA-1:exon:5590;Parent=Msa0448670-mRNA-1 |
chr3_3 | exon | 29730501 | 29730607 | 29730501 | ID=Msa0448670-mRNA-1:exon:5591;Parent=Msa0448670-mRNA-1 |
chr3_3 | exon | 29731309 | 29731404 | 29731309 | ID=Msa0448670-mRNA-1:exon:5592;Parent=Msa0448670-mRNA-1 |
chr3_3 | exon | 29731507 | 29731697 | 29731507 | ID=Msa0448670-mRNA-1:exon:5593;Parent=Msa0448670-mRNA-1 |
chr3_3 | exon | 29731792 | 29731930 | 29731792 | ID=Msa0448670-mRNA-1:exon:5594;Parent=Msa0448670-mRNA-1 |
chr3_3 | CDS | 29727301 | 29727477 | 29727301 | ID=Msa0448670-mRNA-1:cds;Parent=Msa0448670-mRNA-1 |
chr3_3 | CDS | 29728807 | 29728878 | 29728807 | ID=Msa0448670-mRNA-1:cds;Parent=Msa0448670-mRNA-1 |
chr3_3 | CDS | 29729817 | 29729906 | 29729817 | ID=Msa0448670-mRNA-1:cds;Parent=Msa0448670-mRNA-1 |
chr3_3 | CDS | 29730104 | 29730146 | 29730104 | ID=Msa0448670-mRNA-1:cds;Parent=Msa0448670-mRNA-1 |
chr3_3 | CDS | 29730501 | 29730607 | 29730501 | ID=Msa0448670-mRNA-1:cds;Parent=Msa0448670-mRNA-1 |
chr3_3 | CDS | 29731309 | 29731404 | 29731309 | ID=Msa0448670-mRNA-1:cds;Parent=Msa0448670-mRNA-1 |
chr3_3 | CDS | 29731507 | 29731697 | 29731507 | ID=Msa0448670-mRNA-1:cds;Parent=Msa0448670-mRNA-1 |
chr3_3 | CDS | 29731792 | 29731930 | 29731792 | ID=Msa0448670-mRNA-1:cds;Parent=Msa0448670-mRNA-1 |
Gene Sequence |
Protein sequence |