Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0448940 | XP_013459288.2 | 85.401 | 274 | 16 | 4 | 1 | 254 | 1 | 270 | 3.07e-157 | 448 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0448940 | sp|Q9M9U9|RKD1_ARATH | 58.594 | 128 | 39 | 3 | 123 | 236 | 112 | 239 | 1.99e-42 | 148 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0448940 | A0A2K3L4M1 | 67.766 | 273 | 61 | 7 | 1 | 252 | 1 | 267 | 1.81e-119 | 351 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0448940 | TF | RWP-RK |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0448940 | MtrunA17_Chr3g0092141 | 87.097 | 186 | 13 | 3 | 76 | 254 | 1 | 182 | 1.02e-112 | 322 |
| Msa0448940 | MtrunA17_Chr4g0060761 | 47.917 | 192 | 82 | 7 | 69 | 243 | 82 | 272 | 2.05e-46 | 155 |
| Msa0448940 | MtrunA17_Chr3g0127001 | 45.794 | 107 | 45 | 2 | 141 | 240 | 159 | 259 | 2.37e-24 | 98.2 |
| Msa0448940 | MtrunA17_Chr1g0182631 | 42.857 | 112 | 51 | 2 | 136 | 240 | 127 | 232 | 1.32e-22 | 92.8 |
| Msa0448940 | MtrunA17_Chr5g0406901 | 32.031 | 128 | 72 | 3 | 122 | 235 | 188 | 314 | 1.43e-15 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0448940 | AT1G18790.1 | 58.594 | 128 | 39 | 3 | 123 | 236 | 112 | 239 | 2.02e-43 | 148 |
| Msa0448940 | AT1G74480.1 | 56.034 | 116 | 39 | 3 | 129 | 232 | 127 | 242 | 2.10e-35 | 128 |
| Msa0448940 | AT5G66990.1 | 45.455 | 143 | 64 | 3 | 107 | 237 | 132 | 272 | 2.74e-35 | 127 |
| Msa0448940 | AT5G53040.1 | 48.148 | 108 | 43 | 3 | 136 | 236 | 148 | 249 | 2.52e-24 | 98.2 |
| Msa0448940 | AT4G35590.2 | 33.913 | 115 | 62 | 2 | 136 | 236 | 192 | 306 | 1.15e-12 | 67.0 |
| Msa0448940 | AT4G35590.1 | 33.913 | 115 | 62 | 2 | 136 | 236 | 242 | 356 | 1.38e-12 | 67.0 |
Find 45 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACTTGTACATTCTTTATA+AGG | 0.172964 | 3_3:-30951794 | None:intergenic |
| GATTATCATACGTAGAAAAT+TGG | 0.202707 | 3_3:-30951063 | None:intergenic |
| TTCAATGATTGGTCACATTA+TGG | 0.214480 | 3_3:+30951253 | Msa0448940:CDS |
| TGATAACCTTCTATGCTTAA+TGG | 0.225802 | 3_3:-30951373 | None:intergenic |
| AGAGTTTCATTTCGAAATTC+AGG | 0.227635 | 3_3:-30951325 | None:intergenic |
| TTCCATGAAAGGATCAAAAT+TGG | 0.229603 | 3_3:-30951293 | None:intergenic |
| AACTTGATGAAAACACAAAA+AGG | 0.320323 | 3_3:+30952684 | Msa0448940:CDS |
| TCTCTAGCAGCTTGAGATAT+TGG | 0.323623 | 3_3:-30951681 | None:intergenic |
| AAGAAAAGGTGTAGGGATCT+TGG | 0.330015 | 3_3:+30951729 | Msa0448940:intron |
| GCTCGTGGTTATGAGGTTAA+TGG | 0.353288 | 3_3:+30952748 | Msa0448940:CDS |
| TACTTGTACATTCTTTATAA+GGG | 0.359802 | 3_3:-30951793 | None:intergenic |
| TCAATCACAGACTATGGTTA+TGG | 0.390957 | 3_3:+30951462 | Msa0448940:intron |
| GGTGCAGGTACAAGTAATTC+AGG | 0.392094 | 3_3:-30951352 | None:intergenic |
| CCTGCACCATTAAGCATAGA+AGG | 0.395032 | 3_3:+30951367 | Msa0448940:CDS |
| CATTCTTTATAAGGGTTTGA+AGG | 0.417292 | 3_3:-30951785 | None:intergenic |
| TATGAGGTTAATGGAACAAC+AGG | 0.443913 | 3_3:+30952757 | Msa0448940:CDS |
| ATCAAAATTGGTATCTTGCA+TGG | 0.445144 | 3_3:-30951281 | None:intergenic |
| GAAAGAAATGAAGAAGGTAG+AGG | 0.489935 | 3_3:+30952646 | Msa0448940:CDS |
| ATGAATGTGATGAGAAGATA+AGG | 0.493501 | 3_3:+30952603 | Msa0448940:CDS |
| GCTTAGACAAGCATGTTTCA+AGG | 0.494981 | 3_3:+30952706 | Msa0448940:CDS |
| AATTGGAATGGAGGTTGCAA+TGG | 0.509497 | 3_3:-30951046 | None:intergenic |
| AGAGAAGGCTCGTGGTTATG+AGG | 0.510346 | 3_3:+30952741 | Msa0448940:CDS |
| CCTTCTATGCTTAATGGTGC+AGG | 0.511925 | 3_3:-30951367 | None:intergenic |
| ATTGCAGAAAGAAATGAAGA+AGG | 0.517898 | 3_3:+30952640 | Msa0448940:CDS |
| ATGTGGAATGAACTTGATGC+TGG | 0.537913 | 3_3:+30951507 | Msa0448940:CDS |
| CACATTTGAAGAAAAGGTGT+AGG | 0.540159 | 3_3:+30951721 | Msa0448940:intron |
| GAATTCAAAGGTGGCCACAT+AGG | 0.544869 | 3_3:+30951751 | Msa0448940:CDS |
| TCAAAATTGGTATCTTGCAT+GGG | 0.545683 | 3_3:-30951280 | None:intergenic |
| TACTGGAGAAAATGTTGCAA+AGG | 0.556786 | 3_3:+30951569 | Msa0448940:CDS |
| AGGCTAATTACAAGAAGAGA+AGG | 0.568624 | 3_3:+30952726 | Msa0448940:CDS |
| AGGCTCATTAGTTTCCTATG+TGG | 0.571114 | 3_3:-30951765 | None:intergenic |
| TGTTGCAAAGGAAATTGTGA+AGG | 0.572064 | 3_3:+30951581 | Msa0448940:CDS |
| ACATTTGAAGAAAAGGTGTA+GGG | 0.575896 | 3_3:+30951722 | Msa0448940:intron |
| TTATTGGTGGTGCAGGAGCA+AGG | 0.586089 | 3_3:+30952578 | Msa0448940:intron |
| TCATATTTCAAAACCGTGAG+TGG | 0.589090 | 3_3:-30950995 | None:intergenic |
| GTAGGGATCTTGGAATTCAA+AGG | 0.603743 | 3_3:+30951739 | Msa0448940:CDS |
| TACGTAGAAAATTGGAATGG+AGG | 0.603829 | 3_3:-30951055 | None:intergenic |
| TCATACGTAGAAAATTGGAA+TGG | 0.613632 | 3_3:-30951058 | None:intergenic |
| GTTGCAAAGGAAATTGTGAA+GGG | 0.628143 | 3_3:+30951582 | Msa0448940:CDS |
| GCATCAAGTTCATTCCACAT+TGG | 0.632758 | 3_3:-30951504 | None:intergenic |
| GGAGAATGTTGATCCACTCA+CGG | 0.640251 | 3_3:+30950982 | Msa0448940:CDS |
| TGAGAAGATAAGGAATGCTG+TGG | 0.656309 | 3_3:+30952613 | Msa0448940:CDS |
| GCAGGTACAAGTAATTCAGG+TGG | 0.663503 | 3_3:-30951349 | None:intergenic |
| TTACAAGAAGAGAAGGCTCG+TGG | 0.668367 | 3_3:+30952733 | Msa0448940:CDS |
| GGGATCTTGGAATTCAAAGG+TGG | 0.676630 | 3_3:+30951742 | Msa0448940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTAAATTTTTTTTTT+TGG | + | chr3_3:30951992-30952011 | Msa0448940:intron | 0.0% |
| !!! | ATTTTTTAAATTTTTTTTTT+TGG | + | chr3_3:30951992-30952011 | Msa0448940:intron | 0.0% |
| !!! | AATTTTAAATATACTCTATA+CGG | - | chr3_3:30951187-30951206 | None:intergenic | 10.0% |
| !!! | AATTTATTTATTTTGTTAAC+GGG | + | chr3_3:30951423-30951442 | Msa0448940:intron | 10.0% |
| !! | ATTAATAACTCAAAAAATAT+TGG | - | chr3_3:30951823-30951842 | None:intergenic | 10.0% |
| !!! | AATATATTTTAGAAAATATG+AGG | + | chr3_3:30952260-30952279 | Msa0448940:intron | 10.0% |
| !!! | TTTTATTTATTAATTATTGG+TGG | + | chr3_3:30952565-30952584 | Msa0448940:intron | 10.0% |
| !!! | AATTTTAAATATACTCTATA+CGG | - | chr3_3:30951187-30951206 | None:intergenic | 10.0% |
| !!! | AATTTATTTATTTTGTTAAC+GGG | + | chr3_3:30951423-30951442 | Msa0448940:intron | 10.0% |
| !! | ATTAATAACTCAAAAAATAT+TGG | - | chr3_3:30951823-30951842 | None:intergenic | 10.0% |
| !!! | AATATATTTTAGAAAATATG+AGG | + | chr3_3:30952260-30952279 | Msa0448940:intron | 10.0% |
| !!! | TTTTATTTATTAATTATTGG+TGG | + | chr3_3:30952565-30952584 | Msa0448940:intron | 10.0% |
| !! | TGGAAAGTAAAAAAAAAAAA+AGG | - | chr3_3:30951144-30951163 | None:intergenic | 15.0% |
| !! | AATTTGTAAAGATAATTTCA+TGG | - | chr3_3:30951164-30951183 | None:intergenic | 15.0% |
| !!! | ATTTATTTATTTTGTTAACG+GGG | + | chr3_3:30951424-30951443 | Msa0448940:intron | 15.0% |
| !!! | AAAAAGAAAATCATGATTTT+AGG | - | chr3_3:30952366-30952385 | None:intergenic | 15.0% |
| !! | TGGAAAGTAAAAAAAAAAAA+AGG | - | chr3_3:30951144-30951163 | None:intergenic | 15.0% |
| !! | AATTTGTAAAGATAATTTCA+TGG | - | chr3_3:30951164-30951183 | None:intergenic | 15.0% |
| !!! | ATTTATTTATTTTGTTAACG+GGG | + | chr3_3:30951424-30951443 | Msa0448940:intron | 15.0% |
| !!! | AAAAAGAAAATCATGATTTT+AGG | - | chr3_3:30952366-30952385 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAAGGAACTAG+TGG | - | chr3_3:30951135-30951154 | None:intergenic | 20.0% |
| !!! | TTTTTTACAGATTCAATGAT+TGG | + | chr3_3:30951242-30951261 | Msa0448940:intron | 20.0% |
| !!! | TTTTCTATTAACAACATTAC+TGG | + | chr3_3:30951552-30951571 | Msa0448940:CDS | 20.0% |
| !! | TACTTGTACATTCTTTATAA+GGG | - | chr3_3:30951796-30951815 | None:intergenic | 20.0% |
| !! | TTACTTGTACATTCTTTATA+AGG | - | chr3_3:30951797-30951816 | None:intergenic | 20.0% |
| !!! | AATAATGTGATTTTTTGGTT+TGG | - | chr3_3:30951913-30951932 | None:intergenic | 20.0% |
| !!! | CACTAAATAATGTGATTTTT+TGG | - | chr3_3:30951918-30951937 | None:intergenic | 20.0% |
| !! | AAAAATCACATTATTTAGTG+AGG | + | chr3_3:30951918-30951937 | Msa0448940:intron | 20.0% |
| !!! | TCTTTTTTAACTCATAACAT+AGG | - | chr3_3:30952055-30952074 | None:intergenic | 20.0% |
| !! | TGTTAAAAGTTATAGCAAAA+AGG | + | chr3_3:30952223-30952242 | Msa0448940:intron | 20.0% |
| !!! | TAGGTTAATTTTCACTATAA+GGG | - | chr3_3:30952286-30952305 | None:intergenic | 20.0% |
| !!! | TTAGGTTAATTTTCACTATA+AGG | - | chr3_3:30952287-30952306 | None:intergenic | 20.0% |
| !!! | GGAATTGAAAAATCAATTTT+AGG | - | chr3_3:30952305-30952324 | None:intergenic | 20.0% |
| !!! | CTTTTTCTTACTAATTTTTG+TGG | + | chr3_3:30952380-30952399 | Msa0448940:intron | 20.0% |
| !! | AAAAAAAAAAAAGGAACTAG+TGG | - | chr3_3:30951135-30951154 | None:intergenic | 20.0% |
| !!! | TTTTTTACAGATTCAATGAT+TGG | + | chr3_3:30951242-30951261 | Msa0448940:intron | 20.0% |
| !!! | TTTTCTATTAACAACATTAC+TGG | + | chr3_3:30951552-30951571 | Msa0448940:CDS | 20.0% |
| !! | TACTTGTACATTCTTTATAA+GGG | - | chr3_3:30951796-30951815 | None:intergenic | 20.0% |
| !! | TTACTTGTACATTCTTTATA+AGG | - | chr3_3:30951797-30951816 | None:intergenic | 20.0% |
| !!! | AATAATGTGATTTTTTGGTT+TGG | - | chr3_3:30951913-30951932 | None:intergenic | 20.0% |
| !!! | CACTAAATAATGTGATTTTT+TGG | - | chr3_3:30951918-30951937 | None:intergenic | 20.0% |
| !! | AAAAATCACATTATTTAGTG+AGG | + | chr3_3:30951918-30951937 | Msa0448940:intron | 20.0% |
| !!! | TCTTTTTTAACTCATAACAT+AGG | - | chr3_3:30952055-30952074 | None:intergenic | 20.0% |
| !! | TGTTAAAAGTTATAGCAAAA+AGG | + | chr3_3:30952223-30952242 | Msa0448940:intron | 20.0% |
| !!! | TAGGTTAATTTTCACTATAA+GGG | - | chr3_3:30952286-30952305 | None:intergenic | 20.0% |
| !!! | TTAGGTTAATTTTCACTATA+AGG | - | chr3_3:30952287-30952306 | None:intergenic | 20.0% |
| !!! | GGAATTGAAAAATCAATTTT+AGG | - | chr3_3:30952305-30952324 | None:intergenic | 20.0% |
| !!! | CTTTTTCTTACTAATTTTTG+TGG | + | chr3_3:30952380-30952399 | Msa0448940:intron | 20.0% |
| ! | GATTATCATACGTAGAAAAT+TGG | - | chr3_3:30951066-30951085 | None:intergenic | 25.0% |
| !! | GGATAATAATTTTCCATGAA+AGG | - | chr3_3:30951307-30951326 | None:intergenic | 25.0% |
| ! | AATTATTCAATCACAGACTA+TGG | + | chr3_3:30951456-30951475 | Msa0448940:intron | 25.0% |
| !!! | TGTAGTGAATTGTTTTAATG+TGG | + | chr3_3:30952426-30952445 | Msa0448940:intron | 25.0% |
| ! | AACTTGATGAAAACACAAAA+AGG | + | chr3_3:30952684-30952703 | Msa0448940:CDS | 25.0% |
| ! | GATTATCATACGTAGAAAAT+TGG | - | chr3_3:30951066-30951085 | None:intergenic | 25.0% |
| !! | GGATAATAATTTTCCATGAA+AGG | - | chr3_3:30951307-30951326 | None:intergenic | 25.0% |
| ! | AATTATTCAATCACAGACTA+TGG | + | chr3_3:30951456-30951475 | Msa0448940:intron | 25.0% |
| !!! | TGTAGTGAATTGTTTTAATG+TGG | + | chr3_3:30952426-30952445 | Msa0448940:intron | 25.0% |
| ! | AACTTGATGAAAACACAAAA+AGG | + | chr3_3:30952684-30952703 | Msa0448940:CDS | 25.0% |
| TCATACGTAGAAAATTGGAA+TGG | - | chr3_3:30951061-30951080 | None:intergenic | 30.0% | |
| ! | TTCAATGATTGGTCACATTA+TGG | + | chr3_3:30951253-30951272 | Msa0448940:CDS | 30.0% |
| TCAAAATTGGTATCTTGCAT+GGG | - | chr3_3:30951283-30951302 | None:intergenic | 30.0% | |
| ATCAAAATTGGTATCTTGCA+TGG | - | chr3_3:30951284-30951303 | None:intergenic | 30.0% | |
| !! | TACCAATTTTGATCCTTTCA+TGG | + | chr3_3:30951291-30951310 | Msa0448940:CDS | 30.0% |
| TTCCATGAAAGGATCAAAAT+TGG | - | chr3_3:30951296-30951315 | None:intergenic | 30.0% | |
| AGAGTTTCATTTCGAAATTC+AGG | - | chr3_3:30951328-30951347 | None:intergenic | 30.0% | |
| TGATAACCTTCTATGCTTAA+TGG | - | chr3_3:30951376-30951395 | None:intergenic | 30.0% | |
| ! | TTATGGTGATGCTAAAAATG+TGG | + | chr3_3:30951479-30951498 | Msa0448940:CDS | 30.0% |
| ! | ACTTGATGCTGGATTTTATT+CGG | + | chr3_3:30951518-30951537 | Msa0448940:CDS | 30.0% |
| ! | ACATTTGAAGAAAAGGTGTA+GGG | + | chr3_3:30951722-30951741 | Msa0448940:intron | 30.0% |
| CATTCTTTATAAGGGTTTGA+AGG | - | chr3_3:30951788-30951807 | None:intergenic | 30.0% | |
| ATTATTTAGTGAGGAGATCT+AGG | + | chr3_3:30951927-30951946 | Msa0448940:intron | 30.0% | |
| TTATTTAGTGAGGAGATCTA+GGG | + | chr3_3:30951928-30951947 | Msa0448940:intron | 30.0% | |
| !! | TTATTAATTATTGGTGGTGC+AGG | + | chr3_3:30952571-30952590 | Msa0448940:intron | 30.0% |
| ATGAATGTGATGAGAAGATA+AGG | + | chr3_3:30952603-30952622 | Msa0448940:CDS | 30.0% | |
| ATTGCAGAAAGAAATGAAGA+AGG | + | chr3_3:30952640-30952659 | Msa0448940:CDS | 30.0% | |
| !! | TTTTCATCAAGTTGCAAATC+TGG | - | chr3_3:30952677-30952696 | None:intergenic | 30.0% |
| TCATACGTAGAAAATTGGAA+TGG | - | chr3_3:30951061-30951080 | None:intergenic | 30.0% | |
| ! | TTCAATGATTGGTCACATTA+TGG | + | chr3_3:30951253-30951272 | Msa0448940:CDS | 30.0% |
| TCAAAATTGGTATCTTGCAT+GGG | - | chr3_3:30951283-30951302 | None:intergenic | 30.0% | |
| ATCAAAATTGGTATCTTGCA+TGG | - | chr3_3:30951284-30951303 | None:intergenic | 30.0% | |
| !! | TACCAATTTTGATCCTTTCA+TGG | + | chr3_3:30951291-30951310 | Msa0448940:CDS | 30.0% |
| TTCCATGAAAGGATCAAAAT+TGG | - | chr3_3:30951296-30951315 | None:intergenic | 30.0% | |
| AGAGTTTCATTTCGAAATTC+AGG | - | chr3_3:30951328-30951347 | None:intergenic | 30.0% | |
| TGATAACCTTCTATGCTTAA+TGG | - | chr3_3:30951376-30951395 | None:intergenic | 30.0% | |
| ! | TTATGGTGATGCTAAAAATG+TGG | + | chr3_3:30951479-30951498 | Msa0448940:CDS | 30.0% |
| ! | ACTTGATGCTGGATTTTATT+CGG | + | chr3_3:30951518-30951537 | Msa0448940:CDS | 30.0% |
| ! | ACATTTGAAGAAAAGGTGTA+GGG | + | chr3_3:30951722-30951741 | Msa0448940:intron | 30.0% |
| CATTCTTTATAAGGGTTTGA+AGG | - | chr3_3:30951788-30951807 | None:intergenic | 30.0% | |
| ATTATTTAGTGAGGAGATCT+AGG | + | chr3_3:30951927-30951946 | Msa0448940:intron | 30.0% | |
| TTATTTAGTGAGGAGATCTA+GGG | + | chr3_3:30951928-30951947 | Msa0448940:intron | 30.0% | |
| !! | TTATTAATTATTGGTGGTGC+AGG | + | chr3_3:30952571-30952590 | Msa0448940:intron | 30.0% |
| ATGAATGTGATGAGAAGATA+AGG | + | chr3_3:30952603-30952622 | Msa0448940:CDS | 30.0% | |
| ATTGCAGAAAGAAATGAAGA+AGG | + | chr3_3:30952640-30952659 | Msa0448940:CDS | 30.0% | |
| !! | TTTTCATCAAGTTGCAAATC+TGG | - | chr3_3:30952677-30952696 | None:intergenic | 30.0% |
| TCATATTTCAAAACCGTGAG+TGG | - | chr3_3:30950998-30951017 | None:intergenic | 35.0% | |
| TACGTAGAAAATTGGAATGG+AGG | - | chr3_3:30951058-30951077 | None:intergenic | 35.0% | |
| TCAATCACAGACTATGGTTA+TGG | + | chr3_3:30951462-30951481 | Msa0448940:intron | 35.0% | |
| CTAAAAATGTGGTTCCAATG+TGG | + | chr3_3:30951490-30951509 | Msa0448940:CDS | 35.0% | |
| TACTGGAGAAAATGTTGCAA+AGG | + | chr3_3:30951569-30951588 | Msa0448940:CDS | 35.0% | |
| TGTTGCAAAGGAAATTGTGA+AGG | + | chr3_3:30951581-30951600 | Msa0448940:CDS | 35.0% | |
| GTTGCAAAGGAAATTGTGAA+GGG | + | chr3_3:30951582-30951601 | Msa0448940:CDS | 35.0% | |
| AATGTGTAAGCCCAACATTA+AGG | - | chr3_3:30951707-30951726 | None:intergenic | 35.0% | |
| GGCTTACACATTTGAAGAAA+AGG | + | chr3_3:30951715-30951734 | Msa0448940:intron | 35.0% | |
| ! | CACATTTGAAGAAAAGGTGT+AGG | + | chr3_3:30951721-30951740 | Msa0448940:intron | 35.0% |
| CAAGTCGCAAAATTTAGAGA+TGG | - | chr3_3:30952326-30952345 | None:intergenic | 35.0% | |
| ! | CATCTCTAAATTTTGCGACT+TGG | + | chr3_3:30952324-30952343 | Msa0448940:intron | 35.0% |
| !!! | AAATTTTGCGACTTGGTAAG+CGG | + | chr3_3:30952331-30952350 | Msa0448940:intron | 35.0% |
| ATGTTTGCGCAAGCAAATTA+TGG | - | chr3_3:30952476-30952495 | None:intergenic | 35.0% | |
| GAAAGAAATGAAGAAGGTAG+AGG | + | chr3_3:30952646-30952665 | Msa0448940:CDS | 35.0% | |
| AGGCTAATTACAAGAAGAGA+AGG | + | chr3_3:30952726-30952745 | Msa0448940:CDS | 35.0% | |
| TATGAGGTTAATGGAACAAC+AGG | + | chr3_3:30952757-30952776 | Msa0448940:CDS | 35.0% | |
| TCATATTTCAAAACCGTGAG+TGG | - | chr3_3:30950998-30951017 | None:intergenic | 35.0% | |
| TACGTAGAAAATTGGAATGG+AGG | - | chr3_3:30951058-30951077 | None:intergenic | 35.0% | |
| TCAATCACAGACTATGGTTA+TGG | + | chr3_3:30951462-30951481 | Msa0448940:intron | 35.0% | |
| CTAAAAATGTGGTTCCAATG+TGG | + | chr3_3:30951490-30951509 | Msa0448940:CDS | 35.0% | |
| TACTGGAGAAAATGTTGCAA+AGG | + | chr3_3:30951569-30951588 | Msa0448940:CDS | 35.0% | |
| TGTTGCAAAGGAAATTGTGA+AGG | + | chr3_3:30951581-30951600 | Msa0448940:CDS | 35.0% | |
| GTTGCAAAGGAAATTGTGAA+GGG | + | chr3_3:30951582-30951601 | Msa0448940:CDS | 35.0% | |
| AATGTGTAAGCCCAACATTA+AGG | - | chr3_3:30951707-30951726 | None:intergenic | 35.0% | |
| GGCTTACACATTTGAAGAAA+AGG | + | chr3_3:30951715-30951734 | Msa0448940:intron | 35.0% | |
| ! | CACATTTGAAGAAAAGGTGT+AGG | + | chr3_3:30951721-30951740 | Msa0448940:intron | 35.0% |
| CAAGTCGCAAAATTTAGAGA+TGG | - | chr3_3:30952326-30952345 | None:intergenic | 35.0% | |
| ! | CATCTCTAAATTTTGCGACT+TGG | + | chr3_3:30952324-30952343 | Msa0448940:intron | 35.0% |
| !!! | AAATTTTGCGACTTGGTAAG+CGG | + | chr3_3:30952331-30952350 | Msa0448940:intron | 35.0% |
| ATGTTTGCGCAAGCAAATTA+TGG | - | chr3_3:30952476-30952495 | None:intergenic | 35.0% | |
| GAAAGAAATGAAGAAGGTAG+AGG | + | chr3_3:30952646-30952665 | Msa0448940:CDS | 35.0% | |
| AGGCTAATTACAAGAAGAGA+AGG | + | chr3_3:30952726-30952745 | Msa0448940:CDS | 35.0% | |
| TATGAGGTTAATGGAACAAC+AGG | + | chr3_3:30952757-30952776 | Msa0448940:CDS | 35.0% | |
| AATTGGAATGGAGGTTGCAA+TGG | - | chr3_3:30951049-30951068 | None:intergenic | 40.0% | |
| GCATCAAGTTCATTCCACAT+TGG | - | chr3_3:30951507-30951526 | None:intergenic | 40.0% | |
| ATGTGGAATGAACTTGATGC+TGG | + | chr3_3:30951507-30951526 | Msa0448940:CDS | 40.0% | |
| TCTCTAGCAGCTTGAGATAT+TGG | - | chr3_3:30951684-30951703 | None:intergenic | 40.0% | |
| CTGCTAGAGACCTTAATGTT+GGG | + | chr3_3:30951694-30951713 | Msa0448940:intron | 40.0% | |
| ! | AAGAAAAGGTGTAGGGATCT+TGG | + | chr3_3:30951729-30951748 | Msa0448940:intron | 40.0% |
| GTAGGGATCTTGGAATTCAA+AGG | + | chr3_3:30951739-30951758 | Msa0448940:CDS | 40.0% | |
| ! | AGGCTCATTAGTTTCCTATG+TGG | - | chr3_3:30951768-30951787 | None:intergenic | 40.0% |
| TGAGAAGATAAGGAATGCTG+TGG | + | chr3_3:30952613-30952632 | Msa0448940:CDS | 40.0% | |
| GCTTAGACAAGCATGTTTCA+AGG | + | chr3_3:30952706-30952725 | Msa0448940:CDS | 40.0% | |
| AATTGGAATGGAGGTTGCAA+TGG | - | chr3_3:30951049-30951068 | None:intergenic | 40.0% | |
| GCATCAAGTTCATTCCACAT+TGG | - | chr3_3:30951507-30951526 | None:intergenic | 40.0% | |
| ATGTGGAATGAACTTGATGC+TGG | + | chr3_3:30951507-30951526 | Msa0448940:CDS | 40.0% | |
| TCTCTAGCAGCTTGAGATAT+TGG | - | chr3_3:30951684-30951703 | None:intergenic | 40.0% | |
| CTGCTAGAGACCTTAATGTT+GGG | + | chr3_3:30951694-30951713 | Msa0448940:intron | 40.0% | |
| ! | AAGAAAAGGTGTAGGGATCT+TGG | + | chr3_3:30951729-30951748 | Msa0448940:intron | 40.0% |
| GTAGGGATCTTGGAATTCAA+AGG | + | chr3_3:30951739-30951758 | Msa0448940:CDS | 40.0% | |
| ! | AGGCTCATTAGTTTCCTATG+TGG | - | chr3_3:30951768-30951787 | None:intergenic | 40.0% |
| TGAGAAGATAAGGAATGCTG+TGG | + | chr3_3:30952613-30952632 | Msa0448940:CDS | 40.0% | |
| GCTTAGACAAGCATGTTTCA+AGG | + | chr3_3:30952706-30952725 | Msa0448940:CDS | 40.0% | |
| GGAGAATGTTGATCCACTCA+CGG | + | chr3_3:30950982-30951001 | Msa0448940:CDS | 45.0% | |
| GCAGGTACAAGTAATTCAGG+TGG | - | chr3_3:30951352-30951371 | None:intergenic | 45.0% | |
| GGTGCAGGTACAAGTAATTC+AGG | - | chr3_3:30951355-30951374 | None:intergenic | 45.0% | |
| CCTTCTATGCTTAATGGTGC+AGG | - | chr3_3:30951370-30951389 | None:intergenic | 45.0% | |
| CCTGCACCATTAAGCATAGA+AGG | + | chr3_3:30951367-30951386 | Msa0448940:CDS | 45.0% | |
| GCTGCTAGAGACCTTAATGT+TGG | + | chr3_3:30951693-30951712 | Msa0448940:intron | 45.0% | |
| GGGATCTTGGAATTCAAAGG+TGG | + | chr3_3:30951742-30951761 | Msa0448940:CDS | 45.0% | |
| GAATTCAAAGGTGGCCACAT+AGG | + | chr3_3:30951751-30951770 | Msa0448940:CDS | 45.0% | |
| TTACAAGAAGAGAAGGCTCG+TGG | + | chr3_3:30952733-30952752 | Msa0448940:CDS | 45.0% | |
| GCTCGTGGTTATGAGGTTAA+TGG | + | chr3_3:30952748-30952767 | Msa0448940:CDS | 45.0% | |
| GGAGAATGTTGATCCACTCA+CGG | + | chr3_3:30950982-30951001 | Msa0448940:CDS | 45.0% | |
| GCAGGTACAAGTAATTCAGG+TGG | - | chr3_3:30951352-30951371 | None:intergenic | 45.0% | |
| GGTGCAGGTACAAGTAATTC+AGG | - | chr3_3:30951355-30951374 | None:intergenic | 45.0% | |
| CCTTCTATGCTTAATGGTGC+AGG | - | chr3_3:30951370-30951389 | None:intergenic | 45.0% | |
| CCTGCACCATTAAGCATAGA+AGG | + | chr3_3:30951367-30951386 | Msa0448940:CDS | 45.0% | |
| GCTGCTAGAGACCTTAATGT+TGG | + | chr3_3:30951693-30951712 | Msa0448940:intron | 45.0% | |
| GGGATCTTGGAATTCAAAGG+TGG | + | chr3_3:30951742-30951761 | Msa0448940:CDS | 45.0% | |
| GAATTCAAAGGTGGCCACAT+AGG | + | chr3_3:30951751-30951770 | Msa0448940:CDS | 45.0% | |
| TTACAAGAAGAGAAGGCTCG+TGG | + | chr3_3:30952733-30952752 | Msa0448940:CDS | 45.0% | |
| GCTCGTGGTTATGAGGTTAA+TGG | + | chr3_3:30952748-30952767 | Msa0448940:CDS | 45.0% | |
| !!! | TAATTTATTTATTTTGTTAA+CGG | + | chr3_3:30951422-30951441 | Msa0448940:intron | 5.0% |
| !!! | ACATTTTATTTATTAATTAT+TGG | + | chr3_3:30952562-30952581 | Msa0448940:intron | 5.0% |
| !!! | TAATTTATTTATTTTGTTAA+CGG | + | chr3_3:30951422-30951441 | Msa0448940:intron | 5.0% |
| !!! | ACATTTTATTTATTAATTAT+TGG | + | chr3_3:30952562-30952581 | Msa0448940:intron | 5.0% |
| !! | TTATTGGTGGTGCAGGAGCA+AGG | + | chr3_3:30952578-30952597 | Msa0448940:intron | 50.0% |
| AGAGAAGGCTCGTGGTTATG+AGG | + | chr3_3:30952741-30952760 | Msa0448940:CDS | 50.0% | |
| !! | TTATTGGTGGTGCAGGAGCA+AGG | + | chr3_3:30952578-30952597 | Msa0448940:intron | 50.0% |
| AGAGAAGGCTCGTGGTTATG+AGG | + | chr3_3:30952741-30952760 | Msa0448940:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 30950980 | 30952802 | 30950980 | ID=Msa0448940;Name=Msa0448940 |
| chr3_3 | mRNA | 30950980 | 30952802 | 30950980 | ID=Msa0448940-mRNA-1;Parent=Msa0448940;Name=Msa0448940-mRNA-1;_AED=0.20;_eAED=0.22;_QI=0|0|0|0.6|0.75|0.8|5|0|254 |
| chr3_3 | exon | 30950980 | 30951074 | 30950980 | ID=Msa0448940-mRNA-1:exon:5706;Parent=Msa0448940-mRNA-1 |
| chr3_3 | exon | 30951252 | 30951388 | 30951252 | ID=Msa0448940-mRNA-1:exon:5707;Parent=Msa0448940-mRNA-1 |
| chr3_3 | exon | 30951472 | 30951710 | 30951472 | ID=Msa0448940-mRNA-1:exon:5708;Parent=Msa0448940-mRNA-1 |
| chr3_3 | exon | 30951732 | 30951812 | 30951732 | ID=Msa0448940-mRNA-1:exon:5709;Parent=Msa0448940-mRNA-1 |
| chr3_3 | exon | 30952593 | 30952802 | 30952593 | ID=Msa0448940-mRNA-1:exon:5710;Parent=Msa0448940-mRNA-1 |
| chr3_3 | CDS | 30950980 | 30951074 | 30950980 | ID=Msa0448940-mRNA-1:cds;Parent=Msa0448940-mRNA-1 |
| chr3_3 | CDS | 30951252 | 30951388 | 30951252 | ID=Msa0448940-mRNA-1:cds;Parent=Msa0448940-mRNA-1 |
| chr3_3 | CDS | 30951472 | 30951710 | 30951472 | ID=Msa0448940-mRNA-1:cds;Parent=Msa0448940-mRNA-1 |
| chr3_3 | CDS | 30951732 | 30951812 | 30951732 | ID=Msa0448940-mRNA-1:cds;Parent=Msa0448940-mRNA-1 |
| chr3_3 | CDS | 30952593 | 30952802 | 30952593 | ID=Msa0448940-mRNA-1:cds;Parent=Msa0448940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
