Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0450950 | QJU69413.1 | 100.000 | 69 | 0 | 0 | 1 | 69 | 1 | 69 | 6.20e-42 | 149 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0450950 | sp|A0A0P0X0C0|MPH1_ORYSJ | 61.905 | 63 | 24 | 0 | 7 | 69 | 5 | 67 | 2.88e-23 | 94.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0450950 | A0A6M5K8M6 | 100.000 | 69 | 0 | 0 | 1 | 69 | 1 | 69 | 2.96e-42 | 149 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0450950 | TF | GARP-G2-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0450950 | MtrunA17_Chr3g0095611 | 98.551 | 69 | 1 | 0 | 1 | 69 | 1 | 69 | 1.79e-45 | 147 |
| Msa0450950 | MtrunA17_Chr2g0288601 | 61.905 | 63 | 24 | 0 | 7 | 69 | 59 | 121 | 1.22e-23 | 89.4 |
| Msa0450950 | MtrunA17_Chr8g0379121 | 57.576 | 66 | 28 | 0 | 4 | 69 | 96 | 161 | 1.32e-22 | 92.0 |
| Msa0450950 | MtrunA17_Chr1g0162931 | 66.102 | 59 | 20 | 0 | 11 | 69 | 10 | 68 | 4.56e-22 | 89.0 |
| Msa0450950 | MtrunA17_Chr2g0283951 | 59.091 | 66 | 27 | 0 | 4 | 69 | 74 | 139 | 6.27e-22 | 89.7 |
| Msa0450950 | MtrunA17_Chr2g0320231 | 62.295 | 61 | 23 | 0 | 9 | 69 | 87 | 147 | 8.43e-22 | 89.4 |
| Msa0450950 | MtrunA17_Chr1g0210911 | 61.667 | 60 | 23 | 0 | 10 | 69 | 13 | 72 | 2.52e-21 | 87.8 |
| Msa0450950 | MtrunA17_Chr7g0243081 | 53.623 | 69 | 32 | 0 | 1 | 69 | 53 | 121 | 3.21e-21 | 87.8 |
| Msa0450950 | MtrunA17_Chr1g0190301 | 56.061 | 66 | 28 | 1 | 4 | 69 | 161 | 225 | 5.29e-19 | 82.0 |
| Msa0450950 | MtrunA17_Chr7g0274471 | 55.172 | 58 | 26 | 0 | 19 | 76 | 218 | 275 | 6.58e-18 | 79.0 |
| Msa0450950 | MtrunA17_Chr7g0261911 | 53.448 | 58 | 27 | 0 | 19 | 76 | 262 | 319 | 2.63e-17 | 77.4 |
| Msa0450950 | MtrunA17_Chr5g0417521 | 56.863 | 51 | 22 | 0 | 19 | 69 | 15 | 65 | 4.56e-17 | 76.3 |
| Msa0450950 | MtrunA17_Chr5g0409731 | 41.935 | 93 | 42 | 2 | 8 | 93 | 7 | 94 | 2.35e-16 | 73.9 |
| Msa0450950 | MtrunA17_Chr6g0461641 | 54.902 | 51 | 23 | 0 | 19 | 69 | 42 | 92 | 4.70e-16 | 73.6 |
| Msa0450950 | MtrunA17_Chr8g0356501 | 62.745 | 51 | 19 | 0 | 19 | 69 | 37 | 87 | 5.78e-16 | 73.2 |
| Msa0450950 | MtrunA17_Chr2g0321461 | 48.485 | 66 | 33 | 1 | 4 | 69 | 31 | 95 | 1.73e-15 | 72.0 |
| Msa0450950 | MtrunA17_Chr2g0310011 | 62.745 | 51 | 19 | 0 | 19 | 69 | 35 | 85 | 1.77e-15 | 71.6 |
| Msa0450950 | MtrunA17_Chr6g0479431 | 39.759 | 83 | 46 | 1 | 18 | 100 | 201 | 279 | 3.35e-15 | 71.2 |
| Msa0450950 | MtrunA17_Chr2g0291021 | 44.156 | 77 | 41 | 1 | 21 | 95 | 51 | 127 | 5.42e-15 | 70.5 |
| Msa0450950 | MtrunA17_Chr7g0258551 | 56.604 | 53 | 23 | 0 | 17 | 69 | 210 | 262 | 1.16e-14 | 69.7 |
| Msa0450950 | MtrunA17_Chr1g0197171 | 60.784 | 51 | 20 | 0 | 19 | 69 | 44 | 94 | 1.17e-14 | 68.9 |
| Msa0450950 | MtrunA17_Chr1g0175081 | 48.333 | 60 | 31 | 0 | 17 | 76 | 20 | 79 | 1.24e-14 | 65.5 |
| Msa0450950 | MtrunA17_Chr8g0366281 | 55.769 | 52 | 23 | 0 | 18 | 69 | 172 | 223 | 1.50e-14 | 69.3 |
| Msa0450950 | MtrunA17_Chr1g0154261 | 44.928 | 69 | 36 | 1 | 1 | 69 | 110 | 176 | 1.95e-14 | 68.6 |
| Msa0450950 | MtrunA17_Chr2g0290991 | 58.824 | 51 | 21 | 0 | 19 | 69 | 39 | 89 | 3.58e-14 | 67.8 |
| Msa0450950 | MtrunA17_Chr3g0109981 | 53.846 | 52 | 24 | 0 | 18 | 69 | 273 | 324 | 3.86e-14 | 68.2 |
| Msa0450950 | MtrunA17_Chr5g0410741 | 53.846 | 52 | 24 | 0 | 18 | 69 | 218 | 269 | 3.90e-14 | 68.2 |
| Msa0450950 | MtrunA17_Chr7g0254981 | 46.970 | 66 | 35 | 0 | 4 | 69 | 35 | 100 | 3.98e-14 | 67.4 |
| Msa0450950 | MtrunA17_Chr1g0175091 | 47.692 | 65 | 34 | 0 | 5 | 69 | 244 | 308 | 8.52e-14 | 67.4 |
| Msa0450950 | MtrunA17_Chr1g0175071 | 45.570 | 79 | 41 | 1 | 21 | 97 | 179 | 257 | 1.97e-13 | 65.9 |
| Msa0450950 | MtrunA17_Chr4g0042451 | 50.980 | 51 | 25 | 0 | 19 | 69 | 17 | 67 | 2.16e-13 | 65.9 |
| Msa0450950 | MtrunA17_Chr4g0009991 | 54.717 | 53 | 23 | 1 | 17 | 69 | 65 | 116 | 4.63e-13 | 62.0 |
| Msa0450950 | MtrunA17_Chr7g0242521 | 50.000 | 68 | 28 | 2 | 5 | 69 | 2 | 66 | 7.49e-13 | 63.5 |
| Msa0450950 | MtrunA17_Chr7g0258531 | 53.704 | 54 | 25 | 0 | 21 | 74 | 215 | 268 | 1.33e-12 | 63.5 |
| Msa0450950 | MtrunA17_Chr4g0009901 | 50.847 | 59 | 28 | 1 | 11 | 69 | 160 | 217 | 3.05e-12 | 62.4 |
| Msa0450950 | MtrunA17_Chr2g0294911 | 36.134 | 119 | 62 | 3 | 17 | 128 | 209 | 320 | 6.11e-11 | 59.3 |
| Msa0450950 | MtrunA17_Chr4g0045361 | 49.057 | 53 | 27 | 0 | 17 | 69 | 272 | 324 | 9.23e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0450950 | AT2G02060.2 | 60.000 | 70 | 28 | 0 | 4 | 73 | 14 | 83 | 5.95e-23 | 91.3 |
| Msa0450950 | AT2G02060.1 | 60.000 | 70 | 28 | 0 | 4 | 73 | 14 | 83 | 5.95e-23 | 91.3 |
| Msa0450950 | AT2G40260.1 | 61.765 | 68 | 25 | 1 | 3 | 69 | 65 | 132 | 2.31e-22 | 91.7 |
| Msa0450950 | AT1G14600.1 | 56.164 | 73 | 32 | 0 | 2 | 74 | 6 | 78 | 6.81e-22 | 88.2 |
| Msa0450950 | AT2G42660.1 | 61.017 | 59 | 23 | 0 | 11 | 69 | 42 | 100 | 3.09e-21 | 86.7 |
| Msa0450950 | AT4G04605.1 | 58.730 | 63 | 26 | 0 | 11 | 73 | 6 | 68 | 6.29e-21 | 85.1 |
| Msa0450950 | AT2G38300.1 | 57.812 | 64 | 27 | 0 | 6 | 69 | 41 | 104 | 2.02e-20 | 85.9 |
| Msa0450950 | AT4G04555.1 | 57.627 | 59 | 25 | 0 | 11 | 69 | 6 | 64 | 2.01e-17 | 73.2 |
| Msa0450950 | AT4G04580.1 | 52.542 | 59 | 28 | 0 | 11 | 69 | 6 | 64 | 3.46e-17 | 73.9 |
| Msa0450950 | AT3G04030.1 | 35.593 | 118 | 68 | 3 | 1 | 115 | 28 | 140 | 1.62e-16 | 75.1 |
| Msa0450950 | AT4G28610.1 | 61.224 | 49 | 19 | 0 | 21 | 69 | 227 | 275 | 1.63e-16 | 75.5 |
| Msa0450950 | AT4G13640.1 | 56.667 | 60 | 26 | 0 | 19 | 78 | 37 | 96 | 1.73e-16 | 74.3 |
| Msa0450950 | AT4G13640.2 | 56.667 | 60 | 26 | 0 | 19 | 78 | 37 | 96 | 1.78e-16 | 74.3 |
| Msa0450950 | AT3G04030.3 | 35.593 | 118 | 68 | 3 | 1 | 115 | 28 | 140 | 1.85e-16 | 75.1 |
| Msa0450950 | AT2G01060.1 | 53.623 | 69 | 28 | 2 | 1 | 69 | 1 | 65 | 2.72e-16 | 73.9 |
| Msa0450950 | AT5G45580.1 | 55.556 | 54 | 24 | 0 | 16 | 69 | 4 | 57 | 3.35e-16 | 73.2 |
| Msa0450950 | AT5G45580.2 | 55.556 | 54 | 24 | 0 | 16 | 69 | 20 | 73 | 3.73e-16 | 73.6 |
| Msa0450950 | AT3G24120.1 | 62.745 | 51 | 19 | 0 | 19 | 69 | 41 | 91 | 4.28e-16 | 73.6 |
| Msa0450950 | AT3G24120.2 | 62.745 | 51 | 19 | 0 | 19 | 69 | 41 | 91 | 4.48e-16 | 73.6 |
| Msa0450950 | AT5G18240.2 | 47.826 | 69 | 35 | 1 | 1 | 69 | 28 | 95 | 8.86e-16 | 73.2 |
| Msa0450950 | AT5G18240.3 | 47.826 | 69 | 35 | 1 | 1 | 69 | 28 | 95 | 8.86e-16 | 73.2 |
| Msa0450950 | AT5G18240.1 | 47.826 | 69 | 35 | 1 | 1 | 69 | 28 | 95 | 1.01e-15 | 73.2 |
| Msa0450950 | AT5G18240.4 | 47.826 | 69 | 35 | 1 | 1 | 69 | 28 | 95 | 1.01e-15 | 73.2 |
| Msa0450950 | AT5G18240.5 | 47.826 | 69 | 35 | 1 | 1 | 69 | 28 | 95 | 1.04e-15 | 73.2 |
| Msa0450950 | AT1G79430.2 | 62.745 | 51 | 19 | 0 | 19 | 69 | 34 | 84 | 1.11e-15 | 72.8 |
| Msa0450950 | AT3G12730.1 | 60.784 | 51 | 20 | 0 | 19 | 69 | 23 | 73 | 1.59e-15 | 71.2 |
| Msa0450950 | AT2G20400.1 | 53.571 | 56 | 26 | 0 | 21 | 76 | 233 | 288 | 7.89e-15 | 70.5 |
| Msa0450950 | AT2G20400.2 | 53.571 | 56 | 26 | 0 | 21 | 76 | 233 | 288 | 8.22e-15 | 70.5 |
| Msa0450950 | AT5G42630.2 | 46.154 | 65 | 33 | 1 | 18 | 82 | 104 | 166 | 8.77e-15 | 68.9 |
| Msa0450950 | AT5G29000.4 | 46.479 | 71 | 37 | 1 | 6 | 76 | 219 | 288 | 1.79e-14 | 68.9 |
| Msa0450950 | AT5G42630.1 | 46.154 | 65 | 33 | 1 | 18 | 82 | 104 | 166 | 1.94e-14 | 68.6 |
| Msa0450950 | AT5G29000.2 | 46.479 | 71 | 37 | 1 | 6 | 76 | 219 | 288 | 2.54e-14 | 69.3 |
| Msa0450950 | AT5G29000.1 | 46.479 | 71 | 37 | 1 | 6 | 76 | 176 | 245 | 2.55e-14 | 68.9 |
| Msa0450950 | AT5G29000.3 | 46.479 | 71 | 37 | 1 | 6 | 76 | 176 | 245 | 2.55e-14 | 68.9 |
| Msa0450950 | AT3G04450.3 | 48.333 | 60 | 30 | 1 | 17 | 76 | 237 | 295 | 2.72e-14 | 68.6 |
| Msa0450950 | AT1G32240.2 | 53.846 | 52 | 24 | 0 | 18 | 69 | 212 | 263 | 2.78e-14 | 68.9 |
| Msa0450950 | AT1G32240.1 | 53.846 | 52 | 24 | 0 | 18 | 69 | 212 | 263 | 3.03e-14 | 68.9 |
| Msa0450950 | AT5G16560.1 | 53.846 | 52 | 24 | 0 | 18 | 69 | 218 | 269 | 3.69e-14 | 68.6 |
| Msa0450950 | AT3G04450.1 | 48.333 | 60 | 30 | 1 | 17 | 76 | 237 | 295 | 3.77e-14 | 68.6 |
| Msa0450950 | AT2G06020.1 | 44.286 | 70 | 31 | 1 | 14 | 75 | 81 | 150 | 4.01e-14 | 68.2 |
| Msa0450950 | AT3G04450.4 | 48.333 | 60 | 30 | 1 | 17 | 76 | 197 | 255 | 4.10e-14 | 68.6 |
| Msa0450950 | AT3G04450.2 | 48.333 | 60 | 30 | 1 | 17 | 76 | 197 | 255 | 4.10e-14 | 68.6 |
| Msa0450950 | AT5G06800.3 | 53.571 | 56 | 26 | 0 | 21 | 76 | 194 | 249 | 7.35e-14 | 67.0 |
| Msa0450950 | AT4G17695.1 | 50.000 | 52 | 26 | 0 | 18 | 69 | 163 | 214 | 7.73e-14 | 67.4 |
| Msa0450950 | AT5G06800.2 | 53.571 | 56 | 26 | 0 | 21 | 76 | 194 | 249 | 1.33e-13 | 67.0 |
| Msa0450950 | AT5G06800.1 | 53.571 | 56 | 26 | 0 | 21 | 76 | 194 | 249 | 1.48e-13 | 67.0 |
| Msa0450950 | AT3G04030.2 | 33.898 | 118 | 69 | 4 | 1 | 115 | 28 | 139 | 1.70e-13 | 66.6 |
| Msa0450950 | AT3G13040.3 | 57.143 | 49 | 21 | 0 | 21 | 69 | 243 | 291 | 1.93e-13 | 66.6 |
| Msa0450950 | AT3G13040.1 | 57.143 | 49 | 21 | 0 | 21 | 69 | 243 | 291 | 1.93e-13 | 66.6 |
| Msa0450950 | AT3G13040.2 | 57.143 | 49 | 21 | 0 | 21 | 69 | 243 | 291 | 1.93e-13 | 66.6 |
| Msa0450950 | AT1G69580.1 | 49.020 | 51 | 26 | 0 | 19 | 69 | 34 | 84 | 2.95e-13 | 65.9 |
| Msa0450950 | AT1G69580.2 | 49.020 | 51 | 26 | 0 | 19 | 69 | 34 | 84 | 3.02e-13 | 65.9 |
Find 41 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGATTATTTGTCGTATT+TGG | 0.138762 | 3_3:+37484345 | None:intergenic |
| GATAATGTTATGTTATATTA+AGG | 0.171825 | 3_3:-37484193 | Msa0450950:three_prime_UTR |
| TTACCTTTGGGGTGAACAAC+TGG | 0.338441 | 3_3:+37486344 | None:intergenic |
| ATCATATTCAAAATGTGTTT+AGG | 0.358434 | 3_3:+37488872 | None:intergenic |
| ATAATGTTATGTTATATTAA+GGG | 0.399609 | 3_3:-37484192 | Msa0450950:three_prime_UTR |
| ACAAAGTATTGATGAAGTTC+CGG | 0.415452 | 3_3:+37489212 | None:intergenic |
| GTTCAAACTGTTGAAAGTCT+TGG | 0.422209 | 3_3:-37489191 | Msa0450950:CDS |
| TTATATATATTCAAATTGAT+AGG | 0.433288 | 3_3:+37484271 | None:intergenic |
| TCTAATAAGAGTATAATGAT+AGG | 0.437208 | 3_3:+37484214 | None:intergenic |
| AACTATTCTTGCACCAACAC+TGG | 0.497047 | 3_3:-37486406 | Msa0450950:CDS |
| TGGTAGATTTAGATATTTGT+TGG | 0.497497 | 3_3:+37484434 | None:intergenic |
| AGTTTATATAATCTCTCCCA+TGG | 0.511824 | 3_3:+37484298 | None:intergenic |
| AACAATAATTCTAAGAGAAG+TGG | 0.514149 | 3_3:-37489281 | Msa0450950:CDS |
| CCAGTGGTGCATAGTGATCA+AGG | 0.520200 | 3_3:-37484387 | Msa0450950:three_prime_UTR |
| CCTTGATCACTATGCACCAC+TGG | 0.528723 | 3_3:+37484387 | None:intergenic |
| TTGAATATGATGCAAGTGAA+GGG | 0.529830 | 3_3:-37488860 | Msa0450950:CDS |
| CAAAACAGCCACGCCTTCGA+TGG | 0.531209 | 3_3:-37489238 | Msa0450950:CDS |
| TTTGAATATGATGCAAGTGA+AGG | 0.533245 | 3_3:-37488861 | Msa0450950:CDS |
| GGTGAACAACTGGAGCAGAT+TGG | 0.536299 | 3_3:+37486354 | None:intergenic |
| CAGTTCTCTATTAATTCCAG+TGG | 0.540686 | 3_3:-37484403 | Msa0450950:three_prime_UTR |
| TCCGGTGTCCATCGAAGGCG+TGG | 0.541150 | 3_3:+37489230 | None:intergenic |
| TGGGAGAGATTATATAAACT+TGG | 0.542403 | 3_3:-37484295 | Msa0450950:three_prime_UTR |
| CCATATTAAAAGTCATCTCC+AGG | 0.551481 | 3_3:-37488825 | Msa0450950:intron |
| AATAGAGAACTGAAAGGGAA+TGG | 0.559124 | 3_3:+37484414 | None:intergenic |
| AGAAAGCATGCACTTGACTC+AGG | 0.560531 | 3_3:+37484495 | None:intergenic |
| TCTAGTTCTATAAAATCCCA+TGG | 0.570838 | 3_3:-37484315 | Msa0450950:three_prime_UTR |
| GAATTAATAGAGAACTGAAA+GGG | 0.578478 | 3_3:+37484409 | None:intergenic |
| GGAATTAATAGAGAACTGAA+AGG | 0.580222 | 3_3:+37484408 | None:intergenic |
| TTTGATAAAATTTACCTTTG+GGG | 0.582723 | 3_3:+37486333 | None:intergenic |
| GAAGTTCCGGTGTCCATCGA+AGG | 0.585063 | 3_3:+37489225 | None:intergenic |
| CAAACTGTTGAAAGTCTTGG+TGG | 0.585108 | 3_3:-37489188 | Msa0450950:CDS |
| GCTCCAGTTGTTCACCCCAA+AGG | 0.588268 | 3_3:-37486347 | Msa0450950:intron |
| ACAATACAAGACAAACAGAA+AGG | 0.591808 | 3_3:+37484141 | None:intergenic |
| GTTTATATAATCTCTCCCAT+GGG | 0.598304 | 3_3:+37484299 | None:intergenic |
| ACCAACACTGGAAGAAAACA+AGG | 0.606646 | 3_3:-37486394 | Msa0450950:CDS |
| GCCACGCCTTCGATGGACAC+CGG | 0.606915 | 3_3:-37489231 | Msa0450950:CDS |
| TTAGATGTACAGGAACGTGA+AGG | 0.615592 | 3_3:-37486433 | Msa0450950:intron |
| TAGATGTACAGGAACGTGAA+GGG | 0.615844 | 3_3:-37486432 | Msa0450950:intron |
| TAGGTATTAATACATGTGAA+AGG | 0.618651 | 3_3:+37484233 | None:intergenic |
| TGAATATGATGCAAGTGAAG+GGG | 0.650743 | 3_3:-37488859 | Msa0450950:CDS |
| CTAGTTCTATAAAATCCCAT+GGG | 0.658747 | 3_3:-37484314 | Msa0450950:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTATATATTATAATAATG+AGG | + | chr3_3:37484736-37484755 | None:intergenic | 10.0% |
| !! | ATATTAAATACTATATCAAA+TGG | + | chr3_3:37485542-37485561 | None:intergenic | 10.0% |
| !! | TTATTATATGATATCAATAT+AGG | + | chr3_3:37485882-37485901 | None:intergenic | 10.0% |
| !!! | TATTATATACGTTTTTTTAA+AGG | + | chr3_3:37486901-37486920 | None:intergenic | 10.0% |
| !!! | TTTTTATTCAAAAAATCAAA+TGG | - | chr3_3:37487175-37487194 | Msa0450950:intron | 10.0% |
| !! | AATATTCTATTAAATTAGTA+AGG | - | chr3_3:37488012-37488031 | Msa0450950:intron | 10.0% |
| !! | ATATTCTATTAAATTAGTAA+GGG | - | chr3_3:37488013-37488032 | Msa0450950:intron | 10.0% |
| !!! | TAATTGTCTTTTTTTTTTTT+TGG | + | chr3_3:37488147-37488166 | None:intergenic | 10.0% |
| !!! | ATAGTTTTTTTTTTTTTTTG+AGG | - | chr3_3:37488282-37488301 | Msa0450950:intron | 10.0% |
| !!! | TAGTTTTTTTTTTTTTTTGA+GGG | - | chr3_3:37488283-37488302 | Msa0450950:intron | 10.0% |
| !!! | TTATTTTTATTTCATTTTAG+AGG | - | chr3_3:37488385-37488404 | Msa0450950:intron | 10.0% |
| !!! | TATTTTTATTTCATTTTAGA+GGG | - | chr3_3:37488386-37488405 | Msa0450950:intron | 10.0% |
| !! | TTATATATATTCAAATTGAT+AGG | + | chr3_3:37489210-37489229 | None:intergenic | 10.0% |
| !! | ATAATGTTATGTTATATTAA+GGG | - | chr3_3:37489286-37489305 | Msa0450950:CDS | 10.0% |
| !!! | ATAATCATCATGTTTTATAT+AGG | - | chr3_3:37484335-37484354 | Msa0450950:three_prime_UTR | 15.0% |
| !!! | TTATTTTCTTCTTTTAATCA+TGG | - | chr3_3:37484466-37484485 | Msa0450950:CDS | 15.0% |
| !! | ATTATGTATAAGTATTAAGA+CGG | - | chr3_3:37484518-37484537 | Msa0450950:intron | 15.0% |
| !! | AATATTCACATATTATGAAA+AGG | + | chr3_3:37484890-37484909 | None:intergenic | 15.0% |
| !!! | TTTTCATAATATGTGAATAT+TGG | - | chr3_3:37484889-37484908 | Msa0450950:intron | 15.0% |
| !!! | ACCAATTTTTACTTATATTT+TGG | - | chr3_3:37486480-37486499 | Msa0450950:intron | 15.0% |
| !!! | CCAATTTTTACTTATATTTT+GGG | - | chr3_3:37486481-37486500 | Msa0450950:intron | 15.0% |
| !!! | TTTTCATTCACTTTTTTATT+AGG | - | chr3_3:37486624-37486643 | Msa0450950:intron | 15.0% |
| !! | ATTTGATAAAATTTACCTTT+GGG | + | chr3_3:37487149-37487168 | None:intergenic | 15.0% |
| !! | AAAAAAAATAGTGATATGAT+AGG | - | chr3_3:37487664-37487683 | Msa0450950:intron | 15.0% |
| !!! | GTACAAAATTGAATTTTATT+AGG | - | chr3_3:37487963-37487982 | Msa0450950:intron | 15.0% |
| !!! | ATCTAAAATTATTTTAAAGG+TGG | + | chr3_3:37488040-37488059 | None:intergenic | 15.0% |
| !!! | GAGATCTAAAATTATTTTAA+AGG | + | chr3_3:37488043-37488062 | None:intergenic | 15.0% |
| !! | GATAATGTTATGTTATATTA+AGG | - | chr3_3:37489285-37489304 | Msa0450950:CDS | 15.0% |
| !! | ATGATTAACAAAGCATATTA+TGG | + | chr3_3:37484417-37484436 | None:intergenic | 20.0% |
| !!! | TTAATCATGGTTTTAAATTG+CGG | - | chr3_3:37484479-37484498 | Msa0450950:CDS | 20.0% |
| !! | ATCATATTCAAAATGTGTTT+AGG | + | chr3_3:37484609-37484628 | None:intergenic | 20.0% |
| !! | AATGAGGATTAAATTAATTG+AGG | + | chr3_3:37484720-37484739 | None:intergenic | 20.0% |
| !! | TTAAAAGTAAAAATTAGACC+TGG | - | chr3_3:37484810-37484829 | Msa0450950:intron | 20.0% |
| !!! | AACATATTTTTGATAGACTA+TGG | - | chr3_3:37484851-37484870 | Msa0450950:CDS | 20.0% |
| !! | GAATATAATAGAACTAAAGT+AGG | + | chr3_3:37484922-37484941 | None:intergenic | 20.0% |
| !!! | TTCTTTTGATAATGAAATCA+TGG | - | chr3_3:37484960-37484979 | Msa0450950:intron | 20.0% |
| !!! | TCTTTTGATAATGAAATCAT+GGG | - | chr3_3:37484961-37484980 | Msa0450950:intron | 20.0% |
| !!! | ATTTTGTCATCAAAAGTAAA+AGG | + | chr3_3:37485118-37485137 | None:intergenic | 20.0% |
| !! | CAATACCTTAATTACATTAA+GGG | + | chr3_3:37485314-37485333 | None:intergenic | 20.0% |
| !!! | TTGTATTATTTTTGTCTTGT+GGG | - | chr3_3:37485620-37485639 | Msa0450950:intron | 20.0% |
| !! | GTCATTAAATTTATGTTCAT+CGG | + | chr3_3:37485652-37485671 | None:intergenic | 20.0% |
| !!! | TTGTATTATTTTTGTCTTGT+GGG | - | chr3_3:37485620-37485639 | Msa0450950:intron | 20.0% |
| !! | TCTTGAAAAAATATGTTCAT+CGG | + | chr3_3:37485748-37485767 | None:intergenic | 20.0% |
| !!! | CTCTAACACTTATTTTTTAT+TGG | - | chr3_3:37485800-37485819 | Msa0450950:intron | 20.0% |
| !!! | TTATCACTCCTATTTTTTAA+TGG | - | chr3_3:37485930-37485949 | Msa0450950:intron | 20.0% |
| !! | AAACAAATACATGATTACAT+TGG | - | chr3_3:37486020-37486039 | Msa0450950:intron | 20.0% |
| !!! | AAACGCATTTTAAAATAATC+TGG | + | chr3_3:37486049-37486068 | None:intergenic | 20.0% |
| !!! | ACTTTTATATGCTTGAAAAT+CGG | - | chr3_3:37486322-37486341 | Msa0450950:intron | 20.0% |
| !!! | CCAATTTTTGCTTATATTTT+GGG | + | chr3_3:37486402-37486421 | None:intergenic | 20.0% |
| !!! | ACCAATTTTTGCTTATATTT+TGG | + | chr3_3:37486403-37486422 | None:intergenic | 20.0% |
| !! | CCCAAAATATAAGTAAAAAT+TGG | + | chr3_3:37486484-37486503 | None:intergenic | 20.0% |
| !!! | TTTTTACTTATATTTTGGGA+CGG | - | chr3_3:37486485-37486504 | Msa0450950:intron | 20.0% |
| !!! | TATATGTTACATTCTTGTTT+AGG | - | chr3_3:37486514-37486533 | Msa0450950:intron | 20.0% |
| !! | AAGTATATGTTACCAAAAAA+AGG | - | chr3_3:37486540-37486559 | Msa0450950:intron | 20.0% |
| !!! | TCTAATATTCACTCTTTTAT+TGG | + | chr3_3:37486725-37486744 | None:intergenic | 20.0% |
| !! | TTTCTGAACGAAATAATTTA+TGG | - | chr3_3:37486852-37486871 | Msa0450950:intron | 20.0% |
| !! | TTTGATAAAATTTACCTTTG+GGG | + | chr3_3:37487148-37487167 | None:intergenic | 20.0% |
| !! | CATTTGATAAAATTTACCTT+TGG | + | chr3_3:37487150-37487169 | None:intergenic | 20.0% |
| !!! | CAAAGGTAAATTTTATCAAA+TGG | - | chr3_3:37487148-37487167 | Msa0450950:intron | 20.0% |
| !! | ATGTTAAGCAAAGTAAAATA+AGG | + | chr3_3:37487532-37487551 | None:intergenic | 20.0% |
| !! | ATTTATTCAACAATGATAGT+TGG | + | chr3_3:37487898-37487917 | None:intergenic | 20.0% |
| !! | ACTATCATTGTTGAATAAAT+AGG | - | chr3_3:37487898-37487917 | Msa0450950:intron | 20.0% |
| !!! | TCTTTTTATTTTAGGAAAGA+GGG | + | chr3_3:37488080-37488099 | None:intergenic | 20.0% |
| !!! | ATCTTTTTATTTTAGGAAAG+AGG | + | chr3_3:37488081-37488100 | None:intergenic | 20.0% |
| !! | ATGAAGTAGTAAAATAGATT+AGG | + | chr3_3:37488241-37488260 | None:intergenic | 20.0% |
| !!! | AGTTAAAAAGTTGATGTATA+TGG | - | chr3_3:37488319-37488338 | Msa0450950:intron | 20.0% |
| !! | AATTGAAAAATTTAGGTATG+TGG | + | chr3_3:37488358-37488377 | None:intergenic | 20.0% |
| !! | AAGGGATAATTGAAAAATTT+AGG | + | chr3_3:37488365-37488384 | None:intergenic | 20.0% |
| !! | ATGAAAATCAATCAAAGAAA+TGG | + | chr3_3:37488463-37488482 | None:intergenic | 20.0% |
| !!! | TCATCAATCTTTTTTTCTTT+AGG | - | chr3_3:37488498-37488517 | Msa0450950:intron | 20.0% |
| !! | TCATTATTATGATCTAAATC+AGG | - | chr3_3:37488685-37488704 | Msa0450950:intron | 20.0% |
| !!! | ATTTCCCTGTTTTATATTAT+AGG | - | chr3_3:37488801-37488820 | Msa0450950:intron | 20.0% |
| !! | ACTACCTATAATATAAAACA+GGG | + | chr3_3:37488808-37488827 | None:intergenic | 20.0% |
| !! | TACTACCTATAATATAAAAC+AGG | + | chr3_3:37488809-37488828 | None:intergenic | 20.0% |
| !! | ATGTTTGAATTGATAAAAGT+AGG | + | chr3_3:37488872-37488891 | None:intergenic | 20.0% |
| !! | AATTTATTGCTATATATTGC+AGG | - | chr3_3:37488958-37488977 | Msa0450950:intron | 20.0% |
| !!! | TCTAATAAGAGTATAATGAT+AGG | + | chr3_3:37489267-37489286 | None:intergenic | 20.0% |
| !! | AACAATAATTCTAAGAGAAG+TGG | - | chr3_3:37484197-37484216 | Msa0450950:three_prime_UTR | 25.0% |
| !! | TTTGAGATCTCTTAATTGAA+GGG | + | chr3_3:37484386-37484405 | None:intergenic | 25.0% |
| !! | ATTTGAGATCTCTTAATTGA+AGG | + | chr3_3:37484387-37484406 | None:intergenic | 25.0% |
| !! | TTTGCAAATTAATTTTGCAG+AGG | - | chr3_3:37484578-37484597 | Msa0450950:intron | 25.0% |
| ! | AGGTTGGATCAAATATATAT+GGG | + | chr3_3:37484700-37484719 | None:intergenic | 25.0% |
| ! | AGGATTAAATTAATTGAGGT+TGG | + | chr3_3:37484716-37484735 | None:intergenic | 25.0% |
| ! | AGTTCTATTATATTCCCTTA+TGG | - | chr3_3:37484927-37484946 | Msa0450950:intron | 25.0% |
| !! | AGAAAGAGAATTTTCCATAA+GGG | + | chr3_3:37484944-37484963 | None:intergenic | 25.0% |
| !! | AAGAAAGAGAATTTTCCATA+AGG | + | chr3_3:37484945-37484964 | None:intergenic | 25.0% |
| ! | CTAATCCCTTAATGTAATTA+AGG | - | chr3_3:37485306-37485325 | Msa0450950:intron | 25.0% |
| ! | CCAATACCTTAATTACATTA+AGG | + | chr3_3:37485315-37485334 | None:intergenic | 25.0% |
| ! | CCTTAATGTAATTAAGGTAT+TGG | - | chr3_3:37485312-37485331 | Msa0450950:intron | 25.0% |
| ! | AAATCTGTATATCTAACTGA+GGG | + | chr3_3:37485342-37485361 | None:intergenic | 25.0% |
| ! | AAAATCTGTATATCTAACTG+AGG | + | chr3_3:37485343-37485362 | None:intergenic | 25.0% |
| !!! | GTTGTATTATTTTTGTCTTG+TGG | - | chr3_3:37485619-37485638 | Msa0450950:intron | 25.0% |
| !!! | GTTGTATTATTTTTGTCTTG+TGG | - | chr3_3:37485619-37485638 | Msa0450950:intron | 25.0% |
| !!! | GATGAACATATTTTTTCAAG+AGG | - | chr3_3:37485747-37485766 | Msa0450950:intron | 25.0% |
| ! | CTTTGGTACCATTAAAAAAT+AGG | + | chr3_3:37485941-37485960 | None:intergenic | 25.0% |
| ! | TTTAATCAAGGTGAATTCTT+TGG | + | chr3_3:37485958-37485977 | None:intergenic | 25.0% |
| !!! | TTTTTGCTTATATTTTGGGA+CGG | + | chr3_3:37486398-37486417 | None:intergenic | 25.0% |
| ! | CCCAAAATATAAGCAAAAAT+TGG | - | chr3_3:37486399-37486418 | Msa0450950:CDS | 25.0% |
| ! | TCAACGAAAGTTAATGTATT+TGG | - | chr3_3:37486422-37486441 | Msa0450950:CDS | 25.0% |
| !!! | TCTTCACTTTTTCCTTTTTT+TGG | + | chr3_3:37486555-37486574 | None:intergenic | 25.0% |
| ! | CATTCTCTTAACATTATTGA+TGG | + | chr3_3:37487014-37487033 | None:intergenic | 25.0% |
| ! | AATATGAACTTCCAAAAAGT+TGG | - | chr3_3:37487290-37487309 | Msa0450950:intron | 25.0% |
| ! | ATCCAAAAAAGATTTAAAGG+TGG | + | chr3_3:37487382-37487401 | None:intergenic | 25.0% |
| !!! | ACCTTTAAATCTTTTTTGGA+TGG | - | chr3_3:37487381-37487400 | Msa0450950:intron | 25.0% |
| ! | ACCATCCAAAAAAGATTTAA+AGG | + | chr3_3:37487385-37487404 | None:intergenic | 25.0% |
| !! | AAGAAGAGATGTAATGTTTT+AGG | + | chr3_3:37487423-37487442 | None:intergenic | 25.0% |
| !!! | AGATGGACTATTATTAGTTT+TGG | + | chr3_3:37487475-37487494 | None:intergenic | 25.0% |
| ! | TCACATGCTATATATGTAAT+AGG | + | chr3_3:37487622-37487641 | None:intergenic | 25.0% |
| ! | ATGATGTCATAGAGAAAATA+AGG | - | chr3_3:37487699-37487718 | Msa0450950:intron | 25.0% |
| ! | ACTTATTCAACAATGATAGT+TGG | + | chr3_3:37487758-37487777 | None:intergenic | 25.0% |
| ! | ACTATCATTGTTGAATAAGT+AGG | - | chr3_3:37487758-37487777 | Msa0450950:intron | 25.0% |
| !!! | AACCTCACAAATTTTTTCAA+AGG | - | chr3_3:37487781-37487800 | Msa0450950:intron | 25.0% |
| !! | TACCTTTGAAAAAATTTGTG+AGG | + | chr3_3:37487786-37487805 | None:intergenic | 25.0% |
| !! | AGGTAAACACTTACTATTTT+TGG | - | chr3_3:37487801-37487820 | Msa0450950:intron | 25.0% |
| ! | ATGATGTCATAGAGAAAATA+AGG | - | chr3_3:37487699-37487718 | Msa0450950:intron | 25.0% |
| !!! | AACCTCACAAATTTTTTCAA+AGG | - | chr3_3:37487781-37487800 | Msa0450950:intron | 25.0% |
| !! | TACCTTTGAAAAAATTTGTG+AGG | + | chr3_3:37487786-37487805 | None:intergenic | 25.0% |
| !! | AGGTAAACACTTACTATTTT+TGG | - | chr3_3:37487801-37487820 | Msa0450950:intron | 25.0% |
| !!! | TGGATGCATCTTTTTATTTT+AGG | + | chr3_3:37488088-37488107 | None:intergenic | 25.0% |
| !!! | TTTTTTTTGGTAGATCATGA+AGG | + | chr3_3:37488134-37488153 | None:intergenic | 25.0% |
| !!! | TCAAAGAAATGGACTAATAT+AGG | + | chr3_3:37488452-37488471 | None:intergenic | 25.0% |
| !!! | CTTTGATTGATTTTCATTTC+TGG | - | chr3_3:37488466-37488485 | Msa0450950:intron | 25.0% |
| !! | GCATAAAAACCTAACTTTTA+AGG | - | chr3_3:37488741-37488760 | Msa0450950:intron | 25.0% |
| !! | CTTTAAGAACCTTAAAAGTT+AGG | + | chr3_3:37488753-37488772 | None:intergenic | 25.0% |
| !!! | TACTATTTTAATTTCTCTGC+TGG | - | chr3_3:37488827-37488846 | Msa0450950:CDS | 25.0% |
| ! | TGGTAGATTTAGATATTTGT+TGG | + | chr3_3:37489047-37489066 | None:intergenic | 25.0% |
| ! | GAATTAATAGAGAACTGAAA+GGG | + | chr3_3:37489072-37489091 | None:intergenic | 25.0% |
| ! | TCATGATTATTTGTCGTATT+TGG | + | chr3_3:37489136-37489155 | None:intergenic | 25.0% |
| ! | TAGGTATTAATACATGTGAA+AGG | + | chr3_3:37489248-37489267 | None:intergenic | 25.0% |
| !! | ACAAAGTATTGATGAAGTTC+CGG | + | chr3_3:37484269-37484288 | None:intergenic | 30.0% |
| TTTGAATATGATGCAAGTGA+AGG | - | chr3_3:37484617-37484636 | Msa0450950:intron | 30.0% | |
| TTGAATATGATGCAAGTGAA+GGG | - | chr3_3:37484618-37484637 | Msa0450950:intron | 30.0% | |
| ! | CTGGAGATGACTTTTAATAT+GGG | + | chr3_3:37484655-37484674 | None:intergenic | 30.0% |
| ACATGAACTATATATGTACC+TGG | + | chr3_3:37484674-37484693 | None:intergenic | 30.0% | |
| GAGGTTGGATCAAATATATA+TGG | + | chr3_3:37484701-37484720 | None:intergenic | 30.0% | |
| AATAGAACTAAAGTAGGAAC+AGG | + | chr3_3:37484916-37484935 | None:intergenic | 30.0% | |
| AAGAAACAAAATCCAGTCTA+GGG | - | chr3_3:37484988-37485007 | Msa0450950:intron | 30.0% | |
| ACAATTACAACAGTAGTATG+TGG | - | chr3_3:37485028-37485047 | Msa0450950:intron | 30.0% | |
| AACGTTTGTGAGATATACAT+GGG | + | chr3_3:37485083-37485102 | None:intergenic | 30.0% | |
| ! | CATTCTTTTATACGAGATGA+GGG | + | chr3_3:37485387-37485406 | None:intergenic | 30.0% |
| ! | TCATTCTTTTATACGAGATG+AGG | + | chr3_3:37485388-37485407 | None:intergenic | 30.0% |
| ! | GCATGTTCACGTTTTTATAA+AGG | - | chr3_3:37485509-37485528 | Msa0450950:intron | 30.0% |
| TTAAATTTATGTTCATCGGC+TGG | + | chr3_3:37485648-37485667 | None:intergenic | 30.0% | |
| !! | TGATGAGGTGATTTTAATCA+AGG | + | chr3_3:37485970-37485989 | None:intergenic | 30.0% |
| AAGATGTGTATATCTTGATG+AGG | + | chr3_3:37485985-37486004 | None:intergenic | 30.0% | |
| AAGCAATTAGCAATTACCAT+AGG | - | chr3_3:37486112-37486131 | Msa0450950:intron | 30.0% | |
| ATTAGCAATTACCATAGGTT+AGG | - | chr3_3:37486117-37486136 | Msa0450950:intron | 30.0% | |
| GCTAATCTTGAGAATGATTA+CGG | - | chr3_3:37486365-37486384 | Msa0450950:CDS | 30.0% | |
| TTTAGATTTCCGAACAACAT+AGG | + | chr3_3:37486766-37486785 | None:intergenic | 30.0% | |
| CAATAATGTTAAGAGAATGC+TGG | - | chr3_3:37487015-37487034 | Msa0450950:intron | 30.0% | |
| !!! | GTCCACCTTTAAATCTTTTT+TGG | - | chr3_3:37487377-37487396 | Msa0450950:intron | 30.0% |
| CAATATAGACTCCTGAAAAA+AGG | + | chr3_3:37487503-37487522 | None:intergenic | 30.0% | |
| !!! | CTTTTTTCAGGAGTCTATAT+TGG | - | chr3_3:37487501-37487520 | Msa0450950:intron | 30.0% |
| ! | GTTAACACACAGTTTTACTT+CGG | + | chr3_3:37487600-37487619 | None:intergenic | 30.0% |
| !! | GAAAGTCTTTTGTTGTGTAA+AGG | + | chr3_3:37488647-37488666 | None:intergenic | 30.0% |
| !! | AAGGTTCTTAAAGAGTATTC+TGG | - | chr3_3:37488760-37488779 | Msa0450950:intron | 30.0% |
| GGAATTAATAGAGAACTGAA+AGG | + | chr3_3:37489073-37489092 | None:intergenic | 30.0% | |
| !! | TCTAGTTCTATAAAATCCCA+TGG | - | chr3_3:37489163-37489182 | Msa0450950:intron | 30.0% |
| !! | CTAGTTCTATAAAATCCCAT+GGG | - | chr3_3:37489164-37489183 | Msa0450950:intron | 30.0% |
| GTTTATATAATCTCTCCCAT+GGG | + | chr3_3:37489182-37489201 | None:intergenic | 30.0% | |
| AGTTTATATAATCTCTCCCA+TGG | + | chr3_3:37489183-37489202 | None:intergenic | 30.0% | |
| TGGGAGAGATTATATAAACT+TGG | - | chr3_3:37489183-37489202 | Msa0450950:CDS | 30.0% | |
| ACAATACAAGACAAACAGAA+AGG | + | chr3_3:37489340-37489359 | None:intergenic | 30.0% | |
| GTTCAAACTGTTGAAAGTCT+TGG | - | chr3_3:37484287-37484306 | Msa0450950:three_prime_UTR | 35.0% | |
| TGAATATGATGCAAGTGAAG+GGG | - | chr3_3:37484619-37484638 | Msa0450950:intron | 35.0% | |
| ! | CCTGGAGATGACTTTTAATA+TGG | + | chr3_3:37484656-37484675 | None:intergenic | 35.0% |
| CCATATTAAAAGTCATCTCC+AGG | - | chr3_3:37484653-37484672 | Msa0450950:intron | 35.0% | |
| GAAGAAACAAAATCCAGTCT+AGG | - | chr3_3:37484987-37485006 | Msa0450950:intron | 35.0% | |
| CAACGTTTGTGAGATATACA+TGG | + | chr3_3:37485084-37485103 | None:intergenic | 35.0% | |
| AGAGAAGTGGGGTTTATAAT+GGG | + | chr3_3:37485163-37485182 | None:intergenic | 35.0% | |
| TAGAGAAGTGGGGTTTATAA+TGG | + | chr3_3:37485164-37485183 | None:intergenic | 35.0% | |
| AAGTAACAACGTAGAGAAGT+GGG | + | chr3_3:37485175-37485194 | None:intergenic | 35.0% | |
| AAAGTAACAACGTAGAGAAG+TGG | + | chr3_3:37485176-37485195 | None:intergenic | 35.0% | |
| GAAAAAATATGTTCATCGGC+TGG | + | chr3_3:37485744-37485763 | None:intergenic | 35.0% | |
| ATTACCATAGGTTAGGTACA+TGG | - | chr3_3:37486124-37486143 | Msa0450950:intron | 35.0% | |
| TTACCATAGGTTAGGTACAT+GGG | - | chr3_3:37486125-37486144 | Msa0450950:intron | 35.0% | |
| ! | TTTTCTCTTTGTCTTTCGTC+AGG | - | chr3_3:37486209-37486228 | Msa0450950:intron | 35.0% |
| ! | TGAGATGCTATAAAAGCACA+CGG | - | chr3_3:37486266-37486285 | Msa0450950:intron | 35.0% |
| TTAGCAAATGAAGAGAAGTG+TGG | + | chr3_3:37486350-37486369 | None:intergenic | 35.0% | |
| !!! | TTACTTATATTTTGGGACGG+AGG | - | chr3_3:37486488-37486507 | Msa0450950:intron | 35.0% |
| !!! | TACTTATATTTTGGGACGGA+GGG | - | chr3_3:37486489-37486508 | Msa0450950:intron | 35.0% |
| AGCACTAATCCTATGTTGTT+CGG | - | chr3_3:37486754-37486773 | Msa0450950:intron | 35.0% | |
| GGAAATCTAAAAGCCATACT+TGG | - | chr3_3:37486775-37486794 | Msa0450950:intron | 35.0% | |
| AATCACACTTACACCAAGTA+TGG | + | chr3_3:37486791-37486810 | None:intergenic | 35.0% | |
| AATGTTAAGAGAATGCTGGT+CGG | - | chr3_3:37487019-37487038 | Msa0450950:intron | 35.0% | |
| ! | GTAAGAGTTCACCAACTTTT+TGG | + | chr3_3:37487304-37487323 | None:intergenic | 35.0% |
| TAGACTCCTGAAAAAAGGTA+TGG | + | chr3_3:37487498-37487517 | None:intergenic | 35.0% | |
| CCAAAGTCTCTGATATAGTT+TGG | + | chr3_3:37488212-37488231 | None:intergenic | 35.0% | |
| CCAAACTATATCAGAGACTT+TGG | - | chr3_3:37488209-37488228 | Msa0450950:intron | 35.0% | |
| TTGATATTCCTCGATCTGAA+GGG | + | chr3_3:37488611-37488630 | None:intergenic | 35.0% | |
| ATTGATATTCCTCGATCTGA+AGG | + | chr3_3:37488612-37488631 | None:intergenic | 35.0% | |
| !! | ATGCGAAGTTCCGTTATTTT+GGG | + | chr3_3:37488725-37488744 | None:intergenic | 35.0% |
| ! | TATGCGAAGTTCCGTTATTT+TGG | + | chr3_3:37488726-37488745 | None:intergenic | 35.0% |
| AATAGAGAACTGAAAGGGAA+TGG | + | chr3_3:37489067-37489086 | None:intergenic | 35.0% | |
| CAGTTCTCTATTAATTCCAG+TGG | - | chr3_3:37489075-37489094 | Msa0450950:intron | 35.0% | |
| CAAACTGTTGAAAGTCTTGG+TGG | - | chr3_3:37484290-37484309 | Msa0450950:three_prime_UTR | 40.0% | |
| !!! | GACGGTGAATTTTTTCGCTA+TGG | - | chr3_3:37484536-37484555 | Msa0450950:intron | 40.0% |
| CTGCAAAAAATACCCTAGAC+TGG | + | chr3_3:37485003-37485022 | None:intergenic | 40.0% | |
| AGTAACAACGTAGAGAAGTG+GGG | + | chr3_3:37485174-37485193 | None:intergenic | 40.0% | |
| !!! | TGCTTATATTTTGGGACGGA+AGG | + | chr3_3:37486394-37486413 | None:intergenic | 40.0% |
| !! | TGGTCGGTTTTTAGATGTAC+AGG | - | chr3_3:37487035-37487054 | Msa0450950:intron | 40.0% |
| TTAGATGTACAGGAACGTGA+AGG | - | chr3_3:37487045-37487064 | Msa0450950:intron | 40.0% | |
| TAGATGTACAGGAACGTGAA+GGG | - | chr3_3:37487046-37487065 | Msa0450950:intron | 40.0% | |
| AACTATTCTTGCACCAACAC+TGG | - | chr3_3:37487072-37487091 | Msa0450950:intron | 40.0% | |
| ACCAACACTGGAAGAAAACA+AGG | - | chr3_3:37487084-37487103 | Msa0450950:intron | 40.0% | |
| ! | CCTGAAAAAAGGTATGGAGA+TGG | + | chr3_3:37487492-37487511 | None:intergenic | 40.0% |
| !!! | CCATCTCCATACCTTTTTTC+AGG | - | chr3_3:37487489-37487508 | Msa0450950:intron | 40.0% |
| TCGATCTGAAGGGAAATGAA+AGG | + | chr3_3:37488601-37488620 | None:intergenic | 40.0% | |
| TTTCATTTCCCTTCAGATCG+AGG | - | chr3_3:37488600-37488619 | Msa0450950:intron | 40.0% | |
| !! | TGCGAAGTTCCGTTATTTTG+GGG | + | chr3_3:37488724-37488743 | None:intergenic | 40.0% |
| AGACCTGGATCTTCTTCTCT+TGG | - | chr3_3:37484825-37484844 | Msa0450950:intron | 45.0% | |
| AGACCAAGAGAAGAAGATCC+AGG | + | chr3_3:37484831-37484850 | None:intergenic | 45.0% | |
| ATGCCCATGTACCTAACCTA+TGG | + | chr3_3:37486131-37486150 | None:intergenic | 45.0% | |
| !!! | GCCTTGTTTTCTTCCAGTGT+TGG | + | chr3_3:37487088-37487107 | None:intergenic | 45.0% |
| !! | TTACCTTTGGGGTGAACAAC+TGG | + | chr3_3:37487137-37487156 | None:intergenic | 45.0% |
| !!! | GCGAAGTTCCGTTATTTTGG+GGG | + | chr3_3:37488723-37488742 | None:intergenic | 45.0% |
| ! | AGAAAGCATGCACTTGACTC+AGG | + | chr3_3:37488986-37489005 | None:intergenic | 45.0% |
| !! | AAAATGAAATAAAAATAAAA+GGG | + | chr3_3:37488383-37488402 | None:intergenic | 5.0% |
| !! | TAAAATGAAATAAAAATAAA+AGG | + | chr3_3:37488384-37488403 | None:intergenic | 5.0% |
| !!! | GGCGTGGCTGTTTTGATTTG+TGG | + | chr3_3:37484235-37484254 | None:intergenic | 50.0% |
| GGTGAACAACTGGAGCAGAT+TGG | + | chr3_3:37487127-37487146 | None:intergenic | 50.0% | |
| !!! | CCGTTATTTTGGGGGCATGA+GGG | + | chr3_3:37488715-37488734 | None:intergenic | 50.0% |
| CCCTCATGCCCCCAAAATAA+CGG | - | chr3_3:37488712-37488731 | Msa0450950:intron | 50.0% | |
| !!! | TCCGTTATTTTGGGGGCATG+AGG | + | chr3_3:37488716-37488735 | None:intergenic | 50.0% |
| CCTTGATCACTATGCACCAC+TGG | + | chr3_3:37489094-37489113 | None:intergenic | 50.0% | |
| CCAGTGGTGCATAGTGATCA+AGG | - | chr3_3:37489091-37489110 | Msa0450950:intron | 50.0% | |
| CAAAACAGCCACGCCTTCGA+TGG | - | chr3_3:37484240-37484259 | Msa0450950:three_prime_UTR | 55.0% | |
| GAAGTTCCGGTGTCCATCGA+AGG | + | chr3_3:37484256-37484275 | None:intergenic | 55.0% | |
| GCTCCAGTTGTTCACCCCAA+AGG | - | chr3_3:37487131-37487150 | Msa0450950:intron | 55.0% | |
| GCCACGCCTTCGATGGACAC+CGG | - | chr3_3:37484247-37484266 | Msa0450950:three_prime_UTR | 65.0% | |
| TCCGGTGTCCATCGAAGGCG+TGG | + | chr3_3:37484251-37484270 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 37484126 | 37489374 | 37484126 | ID=Msa0450950;Name=Msa0450950 |
| chr3_3 | mRNA | 37484126 | 37489374 | 37484126 | ID=Msa0450950-mRNA-1;Parent=Msa0450950;Name=Msa0450950-mRNA-1;_AED=0.06;_eAED=0.06;_QI=65|0.5|0.4|1|0.5|0.8|5|316|146 |
| chr3_3 | exon | 37484126 | 37484520 | 37484126 | ID=Msa0450950-mRNA-1:exon:6803;Parent=Msa0450950-mRNA-1 |
| chr3_3 | exon | 37484826 | 37484884 | 37484826 | ID=Msa0450950-mRNA-1:exon:6802;Parent=Msa0450950-mRNA-1 |
| chr3_3 | exon | 37486348 | 37486443 | 37486348 | ID=Msa0450950-mRNA-1:exon:6801;Parent=Msa0450950-mRNA-1 |
| chr3_3 | exon | 37488826 | 37488902 | 37488826 | ID=Msa0450950-mRNA-1:exon:6800;Parent=Msa0450950-mRNA-1 |
| chr3_3 | exon | 37489180 | 37489374 | 37489180 | ID=Msa0450950-mRNA-1:exon:6799;Parent=Msa0450950-mRNA-1 |
| chr3_3 | five_prime_UTR | 37489310 | 37489374 | 37489310 | ID=Msa0450950-mRNA-1:five_prime_utr;Parent=Msa0450950-mRNA-1 |
| chr3_3 | CDS | 37489180 | 37489309 | 37489180 | ID=Msa0450950-mRNA-1:cds;Parent=Msa0450950-mRNA-1 |
| chr3_3 | CDS | 37488826 | 37488902 | 37488826 | ID=Msa0450950-mRNA-1:cds;Parent=Msa0450950-mRNA-1 |
| chr3_3 | CDS | 37486348 | 37486443 | 37486348 | ID=Msa0450950-mRNA-1:cds;Parent=Msa0450950-mRNA-1 |
| chr3_3 | CDS | 37484826 | 37484884 | 37484826 | ID=Msa0450950-mRNA-1:cds;Parent=Msa0450950-mRNA-1 |
| chr3_3 | CDS | 37484442 | 37484520 | 37484442 | ID=Msa0450950-mRNA-1:cds;Parent=Msa0450950-mRNA-1 |
| chr3_3 | three_prime_UTR | 37484126 | 37484441 | 37484126 | ID=Msa0450950-mRNA-1:three_prime_utr;Parent=Msa0450950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
