AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0451090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0451090 MtrunA17_Chr1g0203051 38.961 616 310 6 84 635 8 621 1.19e-146 445
Msa0451090 MtrunA17_Chr2g0287651 31.854 631 363 8 85 648 2 632 1.53e-102 336
Msa0451090 MtrunA17_Chr2g0308841 55.804 224 99 0 424 647 3 226 9.64e-90 283
Msa0451090 MtrunA17_Chr5g0448761 25.090 558 372 7 166 678 106 662 4.20e-67 237
Msa0451090 MtrunA17_Chr1g0202341 26.633 597 361 8 124 649 20 610 2.38e-66 233
Msa0451090 MtrunA17_Chr5g0441581 27.856 499 306 11 185 643 94 578 3.12e-56 205
Msa0451090 MtrunA17_Chr1g0198761 24.860 712 438 19 152 782 52 747 4.95e-56 206
Msa0451090 MtrunA17_Chr8g0363841 25.424 590 364 13 161 689 63 637 6.46e-52 192
Msa0451090 MtrunA17_Chr5g0448511 27.062 388 239 4 302 651 19 400 2.34e-50 186
Msa0451090 MtrunA17_Chr2g0296781 27.218 496 318 10 188 643 59 551 5.23e-50 187
Msa0451090 MtrunA17_Chr3g0082121 25.227 551 340 9 153 644 49 586 7.61e-50 187
Msa0451090 MtrunA17_Chr2g0324011 24.225 516 352 5 164 644 53 564 1.64e-49 184
Msa0451090 MtrunA17_Chr1g0203721 24.542 546 356 10 141 644 88 619 4.67e-49 186
Msa0451090 MtrunA17_Chr2g0287061 25.586 555 318 15 153 651 189 704 7.22e-49 185
Msa0451090 MtrunA17_Chr3g0118611 24.762 420 278 4 288 673 111 526 5.06e-48 182
Msa0451090 MtrunA17_Chr1g0207551 26.042 480 305 9 210 648 119 589 1.07e-46 179
Msa0451090 MtrunA17_Chr6g0458391 23.121 519 331 9 166 644 271 761 8.91e-46 176
Msa0451090 MtrunA17_Chr5g0440451 23.220 590 379 14 151 673 47 629 1.49e-45 176
Msa0451090 MtrunA17_Chr3g0080351 26.441 503 304 13 183 648 150 623 1.50e-44 172
Msa0451090 MtrunA17_Chr6g0477261 25.986 431 278 7 253 643 11 440 2.67e-44 170
Msa0451090 MtrunA17_Chr2g0291581 24.713 522 321 13 170 644 121 617 6.42e-44 169
Msa0451090 MtrunA17_Chr2g0276841 23.592 657 391 19 152 729 75 699 6.67e-44 169
Msa0451090 MtrunA17_Chr2g0329031 23.675 566 356 15 140 644 7 557 7.11e-43 166
Msa0451090 MtrunA17_Chr5g0431001 26.897 435 247 11 152 516 66 499 3.02e-40 155
Msa0451090 MtrunA17_Chr2g0290391 23.889 540 328 13 161 643 95 608 1.56e-39 156
Msa0451090 MtrunA17_Chr2g0294841 24.955 561 343 17 153 643 51 603 2.26e-38 153
Msa0451090 MtrunA17_Chr2g0291591 24.045 445 285 9 171 581 115 540 1.68e-35 142
Msa0451090 MtrunA17_Chr1g0196541 24.800 500 316 11 284 737 155 640 3.29e-35 143
Msa0451090 MtrunA17_Chr1g0164591 24.671 304 189 3 210 480 11 307 1.28e-28 117
Msa0451090 MtrunA17_Chr1g0171741 34.978 223 96 7 59 250 57 261 7.20e-26 107
Msa0451090 MtrunA17_Chr8g0340801 36.449 107 68 0 232 338 1 107 4.99e-20 85.9
Msa0451090 MtrunA17_Chr7g0258861 26.562 192 137 2 219 406 106 297 5.48e-18 85.9
Msa0451090 MtrunA17_Chr8g0389811 31.111 135 67 1 124 232 61 195 3.47e-16 78.2
Msa0451090 MtrunA17_Chr2g0331371 32.576 132 63 1 127 232 35 166 2.30e-15 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0451090 AT4G38180.1 27.536 552 349 9 166 674 126 669 4.06e-67 238
Msa0451090 AT4G15090.1 26.489 487 301 13 210 651 138 612 3.39e-49 187
Msa0451090 AT4G15090.5 26.489 487 301 13 210 651 138 612 3.39e-49 187
Msa0451090 AT4G15090.3 26.489 487 301 13 210 651 138 612 3.39e-49 187
Msa0451090 AT4G15090.2 26.489 487 301 13 210 651 138 612 3.39e-49 187
Msa0451090 AT4G15090.4 26.489 487 301 13 210 651 138 612 3.39e-49 187
Msa0451090 AT3G06250.2 25.321 545 330 10 145 644 188 700 4.59e-49 186
Msa0451090 AT3G06250.1 25.321 545 330 10 145 644 188 700 4.59e-49 186
Msa0451090 AT3G06250.3 25.321 545 330 10 145 644 188 700 4.59e-49 186
Msa0451090 AT5G18960.2 24.864 551 328 12 145 644 209 724 5.14e-48 183
Msa0451090 AT5G18960.1 24.864 551 328 12 145 644 209 724 5.14e-48 183
Msa0451090 AT2G27110.2 22.043 558 367 9 195 704 107 644 1.72e-45 176
Msa0451090 AT2G27110.1 22.043 558 367 9 195 704 107 644 1.72e-45 176
Msa0451090 AT1G76320.3 25.251 499 321 10 188 648 60 544 7.62e-44 169
Msa0451090 AT1G76320.2 25.251 499 321 10 188 648 60 544 1.32e-43 169
Msa0451090 AT1G76320.1 25.251 499 321 10 188 648 60 544 1.33e-43 169
Msa0451090 AT1G76320.4 25.251 499 321 10 188 648 60 544 1.33e-43 169
Msa0451090 AT3G22170.2 24.231 520 324 12 170 648 128 618 1.75e-43 169
Msa0451090 AT3G22170.1 24.231 520 324 12 170 648 128 618 1.75e-43 169
Msa0451090 AT2G27110.3 22.707 458 309 5 289 704 45 499 3.97e-43 167
Msa0451090 AT1G52520.1 24.547 497 322 11 189 643 148 633 1.63e-42 166
Msa0451090 AT4G38170.1 24.561 399 260 5 290 654 12 403 9.42e-42 161
Msa0451090 AT1G10240.2 22.636 645 380 17 152 712 53 662 1.92e-39 156
Msa0451090 AT1G10240.1 22.636 645 380 17 152 712 53 662 1.92e-39 156
Msa0451090 AT1G80010.1 23.973 584 355 17 189 701 158 723 2.09e-36 147
Msa0451090 AT5G28530.3 23.540 531 335 14 166 643 100 612 3.03e-36 146
Msa0451090 AT5G28530.2 23.540 531 335 14 166 643 100 612 3.03e-36 146
Msa0451090 AT5G28530.1 22.976 531 342 12 166 643 100 616 1.12e-35 144
Msa0451090 AT2G32250.2 23.160 557 312 13 153 644 44 549 4.10e-34 140
Msa0451090 AT2G32250.4 23.160 557 312 13 153 644 44 549 4.10e-34 140
Msa0451090 AT2G32250.6 23.160 557 312 13 153 644 44 549 5.62e-34 140
Msa0451090 AT2G32250.1 23.160 557 312 13 153 644 44 549 5.62e-34 140
Msa0451090 AT2G32250.3 23.160 557 312 13 153 644 44 549 5.62e-34 140
Msa0451090 AT2G32250.5 23.160 557 312 13 153 644 44 549 6.84e-34 139
Msa0451090 AT2G32250.8 23.160 557 312 13 153 644 3 508 7.46e-34 139
Msa0451090 AT2G32250.7 23.160 557 312 13 153 644 3 508 7.58e-34 139
Msa0451090 AT4G19990.3 22.200 509 313 11 182 648 92 559 4.31e-33 137
Msa0451090 AT4G19990.4 22.200 509 313 11 182 648 92 559 4.31e-33 137
Msa0451090 AT4G19990.7 22.200 509 313 11 182 648 106 573 4.82e-33 137
Msa0451090 AT4G19990.1 22.200 509 313 11 182 648 35 502 5.00e-33 136
Msa0451090 AT4G19990.5 22.200 509 313 11 182 648 92 559 6.17e-33 136
Msa0451090 AT4G19990.6 22.200 509 313 11 182 648 92 559 7.11e-33 136
Msa0451090 AT4G19990.2 22.200 509 313 11 182 648 92 559 7.11e-33 136

Find 163 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAATATGCATACGAAATT+TGG 0.102545 3_3:+38192909 None:intergenic
ACTGGAACTTGTAAATTATT+TGG 0.164590 3_3:+38191275 None:intergenic
TTTGGAAATTTGAAAATCTT+TGG 0.203663 3_3:-38192114 Msa0451090:CDS
TGTTTCATATTTACGCTTTA+AGG 0.203916 3_3:-38191879 Msa0451090:CDS
TGTGCAATCTAGAAGGTTTC+AGG 0.208759 3_3:-38193002 Msa0451090:intron
GCGATGATGGTTCGCATTAT+TGG 0.217445 3_3:-38191454 Msa0451090:CDS
CAGAAGAATTTCGAAGTCTT+TGG 0.246838 3_3:-38192496 Msa0451090:CDS
GAAAGTGATGAAGCTTTCTT+AGG 0.257531 3_3:-38193354 Msa0451090:CDS
TGCATGTTCTTGTCTTAGTA+TGG 0.263890 3_3:-38191603 Msa0451090:CDS
CGATGATGGTTCGCATTATT+GGG 0.274812 3_3:-38191453 Msa0451090:CDS
GATGTTTCGAAGCTGCTATT+TGG 0.293362 3_3:-38193141 Msa0451090:CDS
CATTTGCGTAACTTTGATTT+CGG 0.297078 3_3:+38192744 None:intergenic
ATTCGGGAAAATTTCTTTGC+AGG 0.304040 3_3:-38192004 Msa0451090:CDS
CCACACCTGGTTTCATGTTT+CGG 0.305468 3_3:+38192940 None:intergenic
TGTGGGCAGCGGGTCATATT+CGG 0.318111 3_3:-38192021 Msa0451090:CDS
TAAGGTAGGATTTCTGAAAA+AGG 0.322031 3_3:-38192686 Msa0451090:CDS
GTAGGCTACAAAACTTATTC+TGG 0.326159 3_3:-38192534 Msa0451090:CDS
TGTCTTAGTATGGAATCTAT+TGG 0.328663 3_3:-38191593 Msa0451090:CDS
ACAAGCAGATGATGAGGATT+TGG 0.329267 3_3:-38193283 Msa0451090:CDS
TATGTCCCTTCAACTTCATT+TGG 0.337592 3_3:+38192358 None:intergenic
GCATTATTGGGATTCTCATT+TGG 0.338425 3_3:-38191441 Msa0451090:CDS
AATGAAATGGTTGAAAAGTT+TGG 0.339280 3_3:-38192091 Msa0451090:CDS
ATGTTTCGAAGCTGCTATTT+GGG 0.349738 3_3:-38193140 Msa0451090:CDS
GTGGTTGCTTGAGCAGTTAT+TGG 0.352415 3_3:-38192332 Msa0451090:CDS
AACTTCATTTGGAACAATAT+CGG 0.357664 3_3:+38192369 None:intergenic
TCGGTGACCCATTGCATTGC+AGG 0.363995 3_3:+38191193 None:intergenic
GATACGGAAGGGGATGATTA+TGG 0.372019 3_3:-38193480 Msa0451090:CDS
TGTCCATTTGTTGTGTTCTC+TGG 0.380876 3_3:-38192427 Msa0451090:CDS
GGGATTCTCATTTGGTTGCT+AGG 0.381367 3_3:-38191433 Msa0451090:CDS
ACACCCTTTGCTTCTTGAAC+AGG 0.385272 3_3:+38191226 None:intergenic
AAGATTCAAGTTACCAACTT+TGG 0.389423 3_3:-38192772 Msa0451090:CDS
CCGGACAATTCCCTTCAAAC+AGG 0.389965 3_3:-38191083 Msa0451090:CDS
GAAGATGATTATTCCGTTGA+TGG 0.391135 3_3:-38193318 Msa0451090:CDS
GGTTTGCGACCTATCATATA+AGG 0.392932 3_3:-38191381 Msa0451090:CDS
TTTGCCAAGGAGTCAATTAG+AGG 0.402094 3_3:-38191482 Msa0451090:CDS
TGTGGGATTTGCGGTGCATC+TGG 0.402584 3_3:-38191155 Msa0451090:CDS
GTGGGCAGCGGGTCATATTC+GGG 0.409112 3_3:-38192020 Msa0451090:CDS
TGAAAATCTTTGGAATGAAA+TGG 0.410062 3_3:-38192104 Msa0451090:CDS
CAAACATCAATGGATCTTTA+CGG 0.412190 3_3:+38192581 None:intergenic
TATATCACCATTTGTTGTTA+CGG 0.416561 3_3:+38192282 None:intergenic
AGTATGTTATCCACCTCAAC+TGG 0.421557 3_3:+38191257 None:intergenic
CATCGACATCCTTATATGAT+AGG 0.424049 3_3:+38191372 None:intergenic
GGTAGGCTAAAGTCAAAGTA+TGG 0.424767 3_3:-38191311 Msa0451090:CDS
ATTAGAGGCAATTGCGATGA+TGG 0.433204 3_3:-38191467 Msa0451090:CDS
CCATTTGTTGTTACGGATAC+GGG 0.434516 3_3:+38192289 None:intergenic
ATCAAAGTTACGCAAATGAT+TGG 0.435122 3_3:-38192739 Msa0451090:CDS
TGCTAGGTGATCATGAAGTT+TGG 0.435480 3_3:-38192132 Msa0451090:CDS
TAGAAGGTTTCAGGAGAGAC+AGG 0.437311 3_3:-38192993 Msa0451090:CDS
CGAGGCGTTTCATAGCCATA+TGG 0.438166 3_3:-38191960 Msa0451090:CDS
TGAGAAACATTGTGCATTGT+TGG 0.439156 3_3:-38192824 Msa0451090:CDS
GCAGTTATTGGTTGCAATGA+AGG 0.440555 3_3:-38192320 Msa0451090:CDS
ACCATTTGTTGTTACGGATA+CGG 0.447592 3_3:+38192288 None:intergenic
ATAGACAAGAAGGTTATGTT+TGG 0.456063 3_3:-38191658 Msa0451090:CDS
GTGCATTGTTGGCTGCTCAT+AGG 0.457128 3_3:-38192813 Msa0451090:CDS
GGTGACGGTGAAGGAGATAT+TGG 0.458506 3_3:-38193411 Msa0451090:CDS
ACACCAGAGAACACAACAAA+TGG 0.458845 3_3:+38192424 None:intergenic
GCACATACGGTTGGTGTAGA+TGG 0.458898 3_3:-38192556 Msa0451090:CDS
AAATTTCGTGTATCTTAGTA+AGG 0.463217 3_3:-38191405 Msa0451090:CDS
TGTCCTACACTTGATGTAGA+TGG 0.468333 3_3:-38191116 Msa0451090:CDS
TAAATGAACTGTATAAGAAA+AGG 0.471253 3_3:-38192048 Msa0451090:CDS
CCCGTATCCGTAACAACAAA+TGG 0.473217 3_3:-38192289 Msa0451090:CDS
CAAAACTTATTCTGGAGTGA+TGG 0.473242 3_3:-38192526 Msa0451090:CDS
AGCGTACTGACCCTGTTTGA+AGG 0.476847 3_3:+38191072 None:intergenic
ATTGCCTCTAATTGACTCCT+TGG 0.478511 3_3:+38191478 None:intergenic
ATTGTTCCAAATGAAGTTGA+AGG 0.481518 3_3:-38192364 Msa0451090:CDS
AAAACTTATTCTGGAGTGAT+GGG 0.491535 3_3:-38192525 Msa0451090:CDS
CTTTGCTTCTTGAACAGGAA+GGG 0.502823 3_3:+38191231 None:intergenic
TGTATAAGAAAAGGAAAATG+TGG 0.503595 3_3:-38192039 Msa0451090:CDS
TGCCGCTGACGGGTATGATA+AGG 0.503621 3_3:-38192704 Msa0451090:CDS
CCTGTTTGAAGGGAATTGTC+CGG 0.504760 3_3:+38191083 None:intergenic
TTTGGCTTCACAACCACACC+TGG 0.505278 3_3:+38192927 None:intergenic
GAATATCTAACGGATGAACT+TGG 0.508315 3_3:-38191332 Msa0451090:CDS
GATTTCGGCATTGCCAAAGT+TGG 0.509217 3_3:+38192759 None:intergenic
ATTGAGAATTAAAATCAGCT+TGG 0.511424 3_3:+38191852 None:intergenic
GAAAAGGAAAATGTGGGCAG+CGG 0.512510 3_3:-38192032 Msa0451090:CDS
ACACAAACATGTGGGATTTG+CGG 0.513808 3_3:-38191164 Msa0451090:CDS
ATTGATGTTTGTTGCACATA+CGG 0.513952 3_3:-38192569 Msa0451090:CDS
CGATTCAGCACTAAAGACTT+AGG 0.516281 3_3:+38191515 None:intergenic
AAGTCAAAGTATGGTGAAGA+AGG 0.516408 3_3:-38191302 Msa0451090:CDS
ACATGAGAATGAAGCTGATA+CGG 0.517536 3_3:-38193496 Msa0451090:CDS
GGTAGCTCCTGCAATGCAAT+GGG 0.518175 3_3:-38191200 Msa0451090:CDS
TTGGTCTTCAAGAGAGCAGA+TGG 0.520051 3_3:-38192072 Msa0451090:CDS
CAGTTATTGGTTGCAATGAA+GGG 0.522372 3_3:-38192319 Msa0451090:CDS
TGTTGACGATATTGTAAAGA+TGG 0.525284 3_3:-38193187 Msa0451090:CDS
TGATTATTCCGTTGATGGAG+GGG 0.529237 3_3:-38193313 Msa0451090:CDS
TGAAATTTCCCCTCCATCAA+CGG 0.529927 3_3:+38193305 None:intergenic
AAAAGGAAAATGTGGGCAGC+GGG 0.530054 3_3:-38192031 Msa0451090:CDS
AGTGTATAAACTGACCCATA+TGG 0.535252 3_3:+38191945 None:intergenic
GCGTACTGACCCTGTTTGAA+GGG 0.538891 3_3:+38191073 None:intergenic
AGGTAGCTCCTGCAATGCAA+TGG 0.540297 3_3:-38191201 Msa0451090:CDS
TTTACAAGTTCCAGTTGAGG+TGG 0.540673 3_3:-38191267 Msa0451090:CDS
GTATGTGCAACAAACATCAA+TGG 0.540697 3_3:+38192571 None:intergenic
ATGATTATTCCGTTGATGGA+GGG 0.544137 3_3:-38193314 Msa0451090:CDS
TTGATATAATTACTCAACGT+TGG 0.545692 3_3:-38192891 Msa0451090:CDS
ATGTCAAAATATAGACAAGA+AGG 0.545768 3_3:-38191668 Msa0451090:CDS
CTAATTTGAGGTCGCTTGAG+AGG 0.548218 3_3:-38191808 Msa0451090:CDS
CGGTGTTACAGACTAATTTG+AGG 0.552900 3_3:-38191820 Msa0451090:CDS
GTAAATATGAAACACACCTA+TGG 0.558130 3_3:+38191888 None:intergenic
CACTAAAGAAATATTTGAGA+TGG 0.561475 3_3:-38191768 Msa0451090:CDS
GCTGCTATTTGGGAGTCTTG+AGG 0.562706 3_3:-38193130 Msa0451090:CDS
CTTCCTGTTCAAGAAGCAAA+GGG 0.565626 3_3:-38191229 Msa0451090:CDS
AGTCTTTAGTGCTGAATCGT+TGG 0.565841 3_3:-38191511 Msa0451090:CDS
CCTTCCTGTTCAAGAAGCAA+AGG 0.566537 3_3:-38191230 Msa0451090:CDS
TGTTGGTTTGCAAAGATGAA+CGG 0.567136 3_3:-38193090 Msa0451090:intron
GATGATTATTCCGTTGATGG+AGG 0.568489 3_3:-38193315 Msa0451090:CDS
GATGACACTGGTGACGGCGA+AGG 0.569278 3_3:-38193444 Msa0451090:CDS
CATATCATGATTGTGATCAA+AGG 0.574576 3_3:+38192852 None:intergenic
GAGAATGAAGCTGATACGGA+AGG 0.576964 3_3:-38193492 Msa0451090:CDS
GATGATGGTGGTGACGGTGA+AGG 0.582845 3_3:-38193420 Msa0451090:CDS
GAGGCGTTTCATAGCCATAT+GGG 0.584656 3_3:-38191959 Msa0451090:CDS
ATGTTTGTTGCACATACGGT+TGG 0.585388 3_3:-38192565 Msa0451090:CDS
TTTCGTGTATCTTAGTAAGG+AGG 0.585726 3_3:-38191402 Msa0451090:CDS
TGTTCAAGAAGCAAAGGGTG+TGG 0.590795 3_3:-38191224 Msa0451090:CDS
AGAATGAAGCTGATACGGAA+GGG 0.592624 3_3:-38193491 Msa0451090:CDS
CCTTTGCTTCTTGAACAGGA+AGG 0.594040 3_3:+38191230 None:intergenic
TTGTTCCAAATGAAGTTGAA+GGG 0.595428 3_3:-38192363 Msa0451090:CDS
TGTAGATGGTGAATATGTTC+CGG 0.595604 3_3:-38191102 Msa0451090:CDS
GGCTATGAAACGCCTCGCAG+TGG 0.595918 3_3:+38191966 None:intergenic
AAATAATTGTCTGGTTGTGG+TGG 0.596836 3_3:+38192398 None:intergenic
CACATGTTTGTGTTCTACGT+CGG 0.597562 3_3:+38191174 None:intergenic
AATTTCACAAGCAGATGATG+AGG 0.598591 3_3:-38193289 Msa0451090:CDS
TTCACGTGGAAATGAAGTGA+TGG 0.599287 3_3:-38193640 Msa0451090:CDS
CGGACAATTCCCTTCAAACA+GGG 0.600625 3_3:-38191082 Msa0451090:CDS
CATGCAAATTCATCGTTCGA+TGG 0.601122 3_3:+38191620 None:intergenic
GCTATGAAACGCCTCGCAGT+GGG 0.601245 3_3:+38191967 None:intergenic
GAAGGGGATGATTATGGTGA+CGG 0.601590 3_3:-38193474 Msa0451090:CDS
TAATTTACAAGTTCCAGTTG+AGG 0.602229 3_3:-38191270 Msa0451090:CDS
ATACGGTTGGTGTAGATGGT+AGG 0.603080 3_3:-38192552 Msa0451090:CDS
AGAAGGTTTCAGGAGAGACA+GGG 0.605164 3_3:-38192992 Msa0451090:CDS
GAATGAAGCTGATACGGAAG+GGG 0.606510 3_3:-38193490 Msa0451090:CDS
AAAATATTTAGAATATCTAA+CGG 0.607430 3_3:-38191342 Msa0451090:CDS
TCGTTGGTCAATATTTGCCA+AGG 0.607507 3_3:-38191495 Msa0451090:CDS
GGAGATATTGGTGATGATGA+AGG 0.608184 3_3:-38193399 Msa0451090:CDS
GAAGCAGATGACACTGGTGA+CGG 0.609472 3_3:-38193450 Msa0451090:CDS
GAAGGTTTCAGGAGAGACAG+GGG 0.613760 3_3:-38192991 Msa0451090:CDS
GGTGACGGCGAAGGAGATGA+TGG 0.615140 3_3:-38193435 Msa0451090:CDS
CGACGTAGAACACAAACATG+TGG 0.621039 3_3:-38191173 Msa0451090:CDS
GTATAAGAAAAGGAAAATGT+GGG 0.624687 3_3:-38192038 Msa0451090:CDS
TATTGACTCATCCACATCGT+CGG 0.629566 3_3:+38193251 None:intergenic
GTGGTCCGAAACATGAAACC+AGG 0.629631 3_3:-38192945 Msa0451090:CDS
GACGTAGAACACAAACATGT+GGG 0.632169 3_3:-38191172 Msa0451090:CDS
GCAGATGATGAGGATTTGGA+CGG 0.633477 3_3:-38193279 Msa0451090:CDS
TCACCATCTACATCAAGTGT+AGG 0.634744 3_3:+38191113 None:intergenic
GGACGGAAATTCCGACGATG+TGG 0.636246 3_3:-38193262 Msa0451090:CDS
TAATTCTCAATACGGGAGTG+CGG 0.640087 3_3:-38191840 Msa0451090:CDS
TCAAGAAGCAAAGGGTGTGG+AGG 0.641162 3_3:-38191221 Msa0451090:CDS
TACCTTATCATACCCGTCAG+CGG 0.645036 3_3:+38192702 None:intergenic
ATCTAACGGATGAACTTGGT+AGG 0.646613 3_3:-38191328 Msa0451090:CDS
CAGATCTTTAAGATACGTAA+CGG 0.651380 3_3:+38192606 None:intergenic
ACAGTAGAGGAACGCAAGCG+TGG 0.652435 3_3:-38192964 Msa0451090:CDS
AAGGTTTCAGGAGAGACAGG+GGG 0.656156 3_3:-38192990 Msa0451090:CDS
GAAGGAGATGATGGTGGTGA+CGG 0.659275 3_3:-38193426 Msa0451090:CDS
AAACTTATTCTGGAGTGATG+GGG 0.664778 3_3:-38192524 Msa0451090:CDS
ACATCGATGATATGCTCACA+AGG 0.671766 3_3:+38191566 None:intergenic
GCTGACGGGTATGATAAGGT+AGG 0.682565 3_3:-38192700 Msa0451090:CDS
AATGTTGTTGTAGATTCACG+TGG 0.685441 3_3:-38193654 Msa0451090:CDS
GACGGTGAAGCAGATGACAC+TGG 0.697788 3_3:-38193456 Msa0451090:CDS
CAAATGGTGATATAGCAATG+AGG 0.702407 3_3:-38192273 Msa0451090:CDS
GGTACGAAAAGTCATAAACA+AGG 0.704248 3_3:-38191747 Msa0451090:CDS
TAGAACAACATCCCACTGCG+AGG 0.729043 3_3:-38191978 Msa0451090:CDS
AAGTTGAAGGGACATATGTG+TGG 0.730828 3_3:-38192351 Msa0451090:CDS
CCGAAACATGAAACCAGGTG+TGG 0.733557 3_3:-38192940 Msa0451090:CDS
GACGGCGAAGGAGATGATGG+TGG 0.769967 3_3:-38193432 Msa0451090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATATTTAGAATATCTAA+CGG - chr3_3:38193382-38193401 Msa0451090:CDS 10.0%
!! CAAGTAATAAAAAATAAGAA+TGG - chr3_3:38191676-38191695 Msa0451090:CDS 15.0%
!! ATTTACAAATATACAAGATG+TGG - chr3_3:38191128-38191147 Msa0451090:CDS 20.0%
!! AAAACATGGTATATAAAACT+AGG + chr3_3:38191185-38191204 None:intergenic 20.0%
!!! TCAATTTTTTGCTAAAAACA+TGG + chr3_3:38191199-38191218 None:intergenic 20.0%
!! TTTGGAAATTTGAAAATCTT+TGG - chr3_3:38192610-38192629 Msa0451090:CDS 20.0%
!! TAAATGAACTGTATAAGAAA+AGG - chr3_3:38192676-38192695 Msa0451090:CDS 20.0%
! AGATAATCTGACAAACAAAT+GGG + chr3_3:38191160-38191179 None:intergenic 25.0%
! AAACCAACAGTAAAAATTGT+AGG + chr3_3:38191623-38191642 None:intergenic 25.0%
! ATCAATATGCATACGAAATT+TGG + chr3_3:38191818-38191837 None:intergenic 25.0%
! TTGATATAATTACTCAACGT+TGG - chr3_3:38191833-38191852 Msa0451090:CDS 25.0%
!! AACTTCATTTGGAACAATAT+CGG + chr3_3:38192358-38192377 None:intergenic 25.0%
!!! TATATCACCATTTGTTGTTA+CGG + chr3_3:38192445-38192464 None:intergenic 25.0%
!!! GATTTCATCCCTTTTTTTAA+AGG - chr3_3:38192564-38192583 Msa0451090:CDS 25.0%
!! GCATACATCCTTTAAAAAAA+GGG + chr3_3:38192575-38192594 None:intergenic 25.0%
!! AGCATACATCCTTTAAAAAA+AGG + chr3_3:38192576-38192595 None:intergenic 25.0%
!!! TTTTTTAAAGGATGTATGCT+AGG - chr3_3:38192576-38192595 Msa0451090:CDS 25.0%
!!! TGAAAATCTTTGGAATGAAA+TGG - chr3_3:38192620-38192639 Msa0451090:CDS 25.0%
! AATGAAATGGTTGAAAAGTT+TGG - chr3_3:38192633-38192652 Msa0451090:CDS 25.0%
! TGTATAAGAAAAGGAAAATG+TGG - chr3_3:38192685-38192704 Msa0451090:CDS 25.0%
! GTATAAGAAAAGGAAAATGT+GGG - chr3_3:38192686-38192705 Msa0451090:CDS 25.0%
! TGTTTCATATTTACGCTTTA+AGG - chr3_3:38192845-38192864 Msa0451090:CDS 25.0%
! ATTGAGAATTAAAATCAGCT+TGG + chr3_3:38192875-38192894 None:intergenic 25.0%
!!! GCTGATTTTAATTCTCAATA+CGG - chr3_3:38192876-38192895 Msa0451090:CDS 25.0%
!!! CTGATTTTAATTCTCAATAC+GGG - chr3_3:38192877-38192896 Msa0451090:CDS 25.0%
! CACTAAAGAAATATTTGAGA+TGG - chr3_3:38192956-38192975 Msa0451090:CDS 25.0%
! ATGTCAAAATATAGACAAGA+AGG - chr3_3:38193056-38193075 Msa0451090:intron 25.0%
! AAATTTCGTGTATCTTAGTA+AGG - chr3_3:38193319-38193338 Msa0451090:CDS 25.0%
! ACTGGAACTTGTAAATTATT+TGG + chr3_3:38193452-38193471 None:intergenic 25.0%
CAGATAATCTGACAAACAAA+TGG + chr3_3:38191161-38191180 None:intergenic 30.0%
TGTTGACGATATTGTAAAGA+TGG - chr3_3:38191537-38191556 Msa0451090:CDS 30.0%
! TTGCCTACAATTTTTACTGT+TGG - chr3_3:38191617-38191636 Msa0451090:CDS 30.0%
! TTGCACACAAATGTTTGTTA+AGG + chr3_3:38191709-38191728 None:intergenic 30.0%
CATATCATGATTGTGATCAA+AGG + chr3_3:38191875-38191894 None:intergenic 30.0%
! AAGATTCAAGTTACCAACTT+TGG - chr3_3:38191952-38191971 Msa0451090:CDS 30.0%
! CATTTGCGTAACTTTGATTT+CGG + chr3_3:38191983-38192002 None:intergenic 30.0%
ATCAAAGTTACGCAAATGAT+TGG - chr3_3:38191985-38192004 Msa0451090:CDS 30.0%
! TAAGGTAGGATTTCTGAAAA+AGG - chr3_3:38192038-38192057 Msa0451090:CDS 30.0%
!! CAGATCTTTAAGATACGTAA+CGG + chr3_3:38192121-38192140 None:intergenic 30.0%
CAAACATCAATGGATCTTTA+CGG + chr3_3:38192146-38192165 None:intergenic 30.0%
! ATTGATGTTTGTTGCACATA+CGG - chr3_3:38192155-38192174 Msa0451090:intron 30.0%
!! AAAACTTATTCTGGAGTGAT+GGG - chr3_3:38192199-38192218 Msa0451090:intron 30.0%
CAAAAATAATTGTCTGGTTG+TGG + chr3_3:38192332-38192351 None:intergenic 30.0%
ATTGTTCCAAATGAAGTTGA+AGG - chr3_3:38192360-38192379 Msa0451090:CDS 30.0%
TTGTTCCAAATGAAGTTGAA+GGG - chr3_3:38192361-38192380 Msa0451090:CDS 30.0%
! TTTTTCCCAAGAGTTATCAT+AGG - chr3_3:38192490-38192509 Msa0451090:CDS 30.0%
CATAACCTATGATAACTCTT+GGG + chr3_3:38192498-38192517 None:intergenic 30.0%
ACATAACCTATGATAACTCT+TGG + chr3_3:38192499-38192518 None:intergenic 30.0%
GAAATCAAGATTACCAATGT+TGG + chr3_3:38192550-38192569 None:intergenic 30.0%
! ATTTTGTTAAGCACTTCCAT+AGG - chr3_3:38192820-38192839 Msa0451090:CDS 30.0%
GTAAATATGAAACACACCTA+TGG + chr3_3:38192839-38192858 None:intergenic 30.0%
ATAGACAAGAAGGTTATGTT+TGG - chr3_3:38193066-38193085 Msa0451090:intron 30.0%
TGTCTTAGTATGGAATCTAT+TGG - chr3_3:38193131-38193150 Msa0451090:CDS 30.0%
TAATTTACAAGTTCCAGTTG+AGG - chr3_3:38193454-38193473 Msa0451090:CDS 30.0%
AATGTTGTTGTAGATTCACG+TGG - chr3_3:38191070-38191089 Msa0451090:CDS 35.0%
ACATGAGAATGAAGCTGATA+CGG - chr3_3:38191228-38191247 Msa0451090:CDS 35.0%
GAAAGTGATGAAGCTTTCTT+AGG - chr3_3:38191370-38191389 Msa0451090:CDS 35.0%
GAAGATGATTATTCCGTTGA+TGG - chr3_3:38191406-38191425 Msa0451090:CDS 35.0%
! ATGATTATTCCGTTGATGGA+GGG - chr3_3:38191410-38191429 Msa0451090:CDS 35.0%
AATTTCACAAGCAGATGATG+AGG - chr3_3:38191435-38191454 Msa0451090:CDS 35.0%
! ATGTTTCGAAGCTGCTATTT+GGG - chr3_3:38191584-38191603 Msa0451090:CDS 35.0%
!! TGTTGGTTTGCAAAGATGAA+CGG - chr3_3:38191634-38191653 Msa0451090:CDS 35.0%
ACATTTGTGTGCAATCTAGA+AGG - chr3_3:38191715-38191734 Msa0451090:CDS 35.0%
TGAGAAACATTGTGCATTGT+TGG - chr3_3:38191900-38191919 Msa0451090:CDS 35.0%
! GTGATGTTTTCGAATGCTAA+AGG - chr3_3:38192093-38192112 Msa0451090:CDS 35.0%
GTATGTGCAACAAACATCAA+TGG + chr3_3:38192156-38192175 None:intergenic 35.0%
GTAGGCTACAAAACTTATTC+TGG - chr3_3:38192190-38192209 Msa0451090:intron 35.0%
!! CAAAACTTATTCTGGAGTGA+TGG - chr3_3:38192198-38192217 Msa0451090:intron 35.0%
!! AAACTTATTCTGGAGTGATG+GGG - chr3_3:38192200-38192219 Msa0451090:intron 35.0%
CAGAAGAATTTCGAAGTCTT+TGG - chr3_3:38192228-38192247 Msa0451090:intron 35.0%
AAATAATTGTCTGGTTGTGG+TGG + chr3_3:38192329-38192348 None:intergenic 35.0%
CGGTAGCAAAAATAATTGTC+TGG + chr3_3:38192338-38192357 None:intergenic 35.0%
TATGTCCCTTCAACTTCATT+TGG + chr3_3:38192369-38192388 None:intergenic 35.0%
! CAGTTATTGGTTGCAATGAA+GGG - chr3_3:38192405-38192424 Msa0451090:CDS 35.0%
!! ACCATTTGTTGTTACGGATA+CGG + chr3_3:38192439-38192458 None:intergenic 35.0%
CAAATGGTGATATAGCAATG+AGG - chr3_3:38192451-38192470 Msa0451090:CDS 35.0%
! TGTTGGTCATTGCATTTTGT+AGG + chr3_3:38192533-38192552 None:intergenic 35.0%
CAAAATGCAATGACCAACAT+TGG - chr3_3:38192534-38192553 Msa0451090:CDS 35.0%
ATTCGGGAAAATTTCTTTGC+AGG - chr3_3:38192720-38192739 Msa0451090:CDS 35.0%
AGTGTATAAACTGACCCATA+TGG + chr3_3:38192782-38192801 None:intergenic 35.0%
GGTACGAAAAGTCATAAACA+AGG - chr3_3:38192977-38192996 Msa0451090:CDS 35.0%
TGCATGTTCTTGTCTTAGTA+TGG - chr3_3:38193121-38193140 Msa0451090:CDS 35.0%
GCATTATTGGGATTCTCATT+TGG - chr3_3:38193283-38193302 Msa0451090:CDS 35.0%
TTTCGTGTATCTTAGTAAGG+AGG - chr3_3:38193322-38193341 Msa0451090:CDS 35.0%
CATCGACATCCTTATATGAT+AGG + chr3_3:38193355-38193374 None:intergenic 35.0%
! GAATATCTAACGGATGAACT+TGG - chr3_3:38193392-38193411 Msa0451090:CDS 35.0%
AAGTCAAAGTATGGTGAAGA+AGG - chr3_3:38193422-38193441 Msa0451090:CDS 35.0%
TGTAGATGGTGAATATGTTC+CGG - chr3_3:38193622-38193641 Msa0451090:intron 35.0%
TTCACGTGGAAATGAAGTGA+TGG - chr3_3:38191084-38191103 Msa0451090:CDS 40.0%
AGAATGAAGCTGATACGGAA+GGG - chr3_3:38191233-38191252 Msa0451090:CDS 40.0%
!! GGAGATATTGGTGATGATGA+AGG - chr3_3:38191325-38191344 Msa0451090:CDS 40.0%
! GATGATTATTCCGTTGATGG+AGG - chr3_3:38191409-38191428 Msa0451090:CDS 40.0%
! TGATTATTCCGTTGATGGAG+GGG - chr3_3:38191411-38191430 Msa0451090:CDS 40.0%
TGAAATTTCCCCTCCATCAA+CGG + chr3_3:38191422-38191441 None:intergenic 40.0%
ACAAGCAGATGATGAGGATT+TGG - chr3_3:38191441-38191460 Msa0451090:CDS 40.0%
!! TATTGACTCATCCACATCGT+CGG + chr3_3:38191476-38191495 None:intergenic 40.0%
GATGTTTCGAAGCTGCTATT+TGG - chr3_3:38191583-38191602 Msa0451090:CDS 40.0%
TGTGCAATCTAGAAGGTTTC+AGG - chr3_3:38191722-38191741 Msa0451090:CDS 40.0%
! ATGTTTGTTGCACATACGGT+TGG - chr3_3:38192159-38192178 Msa0451090:intron 40.0%
!! TGTCCATTTGTTGTGTTCTC+TGG - chr3_3:38192297-38192316 Msa0451090:CDS 40.0%
ACACCAGAGAACACAACAAA+TGG + chr3_3:38192303-38192322 None:intergenic 40.0%
AAGTTGAAGGGACATATGTG+TGG - chr3_3:38192373-38192392 Msa0451090:CDS 40.0%
! GCAGTTATTGGTTGCAATGA+AGG - chr3_3:38192404-38192423 Msa0451090:CDS 40.0%
!! CCATTTGTTGTTACGGATAC+GGG + chr3_3:38192438-38192457 None:intergenic 40.0%
TGCTAGGTGATCATGAAGTT+TGG - chr3_3:38192592-38192611 Msa0451090:CDS 40.0%
TAATTCTCAATACGGGAGTG+CGG - chr3_3:38192884-38192903 Msa0451090:CDS 40.0%
!! CGGTGTTACAGACTAATTTG+AGG - chr3_3:38192904-38192923 Msa0451090:CDS 40.0%
CATGCAAATTCATCGTTCGA+TGG + chr3_3:38193107-38193126 None:intergenic 40.0%
ACATCGATGATATGCTCACA+AGG + chr3_3:38193161-38193180 None:intergenic 40.0%
CGATTCAGCACTAAAGACTT+AGG + chr3_3:38193212-38193231 None:intergenic 40.0%
! AGTCTTTAGTGCTGAATCGT+TGG - chr3_3:38193213-38193232 Msa0451090:CDS 40.0%
TCGTTGGTCAATATTTGCCA+AGG - chr3_3:38193229-38193248 Msa0451090:CDS 40.0%
TTTGCCAAGGAGTCAATTAG+AGG - chr3_3:38193242-38193261 Msa0451090:CDS 40.0%
! ATTGCCTCTAATTGACTCCT+TGG + chr3_3:38193249-38193268 None:intergenic 40.0%
ATTAGAGGCAATTGCGATGA+TGG - chr3_3:38193257-38193276 Msa0451090:CDS 40.0%
! CGATGATGGTTCGCATTATT+GGG - chr3_3:38193271-38193290 Msa0451090:CDS 40.0%
GGTTTGCGACCTATCATATA+AGG - chr3_3:38193343-38193362 Msa0451090:CDS 40.0%
! ATCTAACGGATGAACTTGGT+AGG - chr3_3:38193396-38193415 Msa0451090:CDS 40.0%
GGTAGGCTAAAGTCAAAGTA+TGG - chr3_3:38193413-38193432 Msa0451090:CDS 40.0%
TTTACAAGTTCCAGTTGAGG+TGG - chr3_3:38193457-38193476 Msa0451090:CDS 40.0%
AGTATGTTATCCACCTCAAC+TGG + chr3_3:38193470-38193489 None:intergenic 40.0%
CTTTGCTTCTTGAACAGGAA+GGG + chr3_3:38193496-38193515 None:intergenic 40.0%
CTTCCTGTTCAAGAAGCAAA+GGG - chr3_3:38193495-38193514 Msa0451090:CDS 40.0%
CACATGTTTGTGTTCTACGT+CGG + chr3_3:38193553-38193572 None:intergenic 40.0%
GACGTAGAACACAAACATGT+GGG - chr3_3:38193552-38193571 Msa0451090:intron 40.0%
ACACAAACATGTGGGATTTG+CGG - chr3_3:38193560-38193579 Msa0451090:intron 40.0%
TGTCCTACACTTGATGTAGA+TGG - chr3_3:38193608-38193627 Msa0451090:intron 40.0%
TCACCATCTACATCAAGTGT+AGG + chr3_3:38193614-38193633 None:intergenic 40.0%
GAGAATGAAGCTGATACGGA+AGG - chr3_3:38191232-38191251 Msa0451090:CDS 45.0%
GAATGAAGCTGATACGGAAG+GGG - chr3_3:38191234-38191253 Msa0451090:CDS 45.0%
GATACGGAAGGGGATGATTA+TGG - chr3_3:38191244-38191263 Msa0451090:CDS 45.0%
GAAGGGGATGATTATGGTGA+CGG - chr3_3:38191250-38191269 Msa0451090:CDS 45.0%
GCAGATGATGAGGATTTGGA+CGG - chr3_3:38191445-38191464 Msa0451090:CDS 45.0%
!! AGATGAACGGTTTTGCTGTG+AGG - chr3_3:38191647-38191666 Msa0451090:CDS 45.0%
!! AACGGTTTTGCTGTGAGGAA+AGG - chr3_3:38191652-38191671 Msa0451090:CDS 45.0%
TAGAAGGTTTCAGGAGAGAC+AGG - chr3_3:38191731-38191750 Msa0451090:CDS 45.0%
AGAAGGTTTCAGGAGAGACA+GGG - chr3_3:38191732-38191751 Msa0451090:CDS 45.0%
CCACACCTGGTTTCATGTTT+CGG + chr3_3:38191787-38191806 None:intergenic 45.0%
GATTTCGGCATTGCCAAAGT+TGG + chr3_3:38191968-38191987 None:intergenic 45.0%
TACCTTATCATACCCGTCAG+CGG + chr3_3:38192025-38192044 None:intergenic 45.0%
! ATACGGTTGGTGTAGATGGT+AGG - chr3_3:38192172-38192191 Msa0451090:intron 45.0%
GTGGTTGCTTGAGCAGTTAT+TGG - chr3_3:38192392-38192411 Msa0451090:CDS 45.0%
CCCGTATCCGTAACAACAAA+TGG - chr3_3:38192435-38192454 Msa0451090:CDS 45.0%
! TTGGTCTTCAAGAGAGCAGA+TGG - chr3_3:38192652-38192671 Msa0451090:CDS 45.0%
GAAAAGGAAAATGTGGGCAG+CGG - chr3_3:38192692-38192711 Msa0451090:CDS 45.0%
AAAAGGAAAATGTGGGCAGC+GGG - chr3_3:38192693-38192712 Msa0451090:CDS 45.0%
! GAGGCGTTTCATAGCCATAT+GGG - chr3_3:38192765-38192784 Msa0451090:CDS 45.0%
! CTAATTTGAGGTCGCTTGAG+AGG - chr3_3:38192916-38192935 Msa0451090:CDS 45.0%
! GCGATGATGGTTCGCATTAT+TGG - chr3_3:38193270-38193289 Msa0451090:CDS 45.0%
GGGATTCTCATTTGGTTGCT+AGG - chr3_3:38193291-38193310 Msa0451090:CDS 45.0%
CCTTTGCTTCTTGAACAGGA+AGG + chr3_3:38193497-38193516 None:intergenic 45.0%
CCTTCCTGTTCAAGAAGCAA+AGG - chr3_3:38193494-38193513 Msa0451090:CDS 45.0%
ACACCCTTTGCTTCTTGAAC+AGG + chr3_3:38193501-38193520 None:intergenic 45.0%
TGTTCAAGAAGCAAAGGGTG+TGG - chr3_3:38193500-38193519 Msa0451090:CDS 45.0%
CGACGTAGAACACAAACATG+TGG - chr3_3:38193551-38193570 Msa0451090:intron 45.0%
CCTGTTTGAAGGGAATTGTC+CGG + chr3_3:38193644-38193663 None:intergenic 45.0%
CGGACAATTCCCTTCAAACA+GGG - chr3_3:38193642-38193661 Msa0451090:CDS 45.0%
GAAGCAGATGACACTGGTGA+CGG - chr3_3:38191274-38191293 Msa0451090:CDS 50.0%
!! GAAGGAGATGATGGTGGTGA+CGG - chr3_3:38191298-38191317 Msa0451090:CDS 50.0%
! GGTGACGGTGAAGGAGATAT+TGG - chr3_3:38191313-38191332 Msa0451090:CDS 50.0%
! GCTGCTATTTGGGAGTCTTG+AGG - chr3_3:38191594-38191613 Msa0451090:CDS 50.0%
GAAGGTTTCAGGAGAGACAG+GGG - chr3_3:38191733-38191752 Msa0451090:CDS 50.0%
AAGGTTTCAGGAGAGACAGG+GGG - chr3_3:38191734-38191753 Msa0451090:CDS 50.0%
AGACAGGGGGTTAACAGTAG+AGG - chr3_3:38191747-38191766 Msa0451090:CDS 50.0%
GTGGTCCGAAACATGAAACC+AGG - chr3_3:38191779-38191798 Msa0451090:CDS 50.0%
CCGAAACATGAAACCAGGTG+TGG - chr3_3:38191784-38191803 Msa0451090:CDS 50.0%
! TTTGGCTTCACAACCACACC+TGG + chr3_3:38191800-38191819 None:intergenic 50.0%
! GTGCATTGTTGGCTGCTCAT+AGG - chr3_3:38191911-38191930 Msa0451090:CDS 50.0%
! GCTTTTGCAAATGCCGCTGA+CGG - chr3_3:38192009-38192028 Msa0451090:CDS 50.0%
! CTTTTGCAAATGCCGCTGAC+GGG - chr3_3:38192010-38192029 Msa0451090:CDS 50.0%
! GCTGACGGGTATGATAAGGT+AGG - chr3_3:38192024-38192043 Msa0451090:CDS 50.0%
! GCACATACGGTTGGTGTAGA+TGG - chr3_3:38192168-38192187 Msa0451090:intron 50.0%
TAGAACAACATCCCACTGCG+AGG - chr3_3:38192746-38192765 Msa0451090:CDS 50.0%
! CGAGGCGTTTCATAGCCATA+TGG - chr3_3:38192764-38192783 Msa0451090:CDS 50.0%
! TCAAGAAGCAAAGGGTGTGG+AGG - chr3_3:38193503-38193522 Msa0451090:CDS 50.0%
AGGTAGCTCCTGCAATGCAA+TGG - chr3_3:38193523-38193542 Msa0451090:intron 50.0%
GGTAGCTCCTGCAATGCAAT+GGG - chr3_3:38193524-38193543 Msa0451090:intron 50.0%
CCGGACAATTCCCTTCAAAC+AGG - chr3_3:38193641-38193660 Msa0451090:CDS 50.0%
! GCGTACTGACCCTGTTTGAA+GGG + chr3_3:38193654-38193673 None:intergenic 50.0%
! AGCGTACTGACCCTGTTTGA+AGG + chr3_3:38193655-38193674 None:intergenic 50.0%
GACGGTGAAGCAGATGACAC+TGG - chr3_3:38191268-38191287 Msa0451090:CDS 55.0%
!! GATGATGGTGGTGACGGTGA+AGG - chr3_3:38191304-38191323 Msa0451090:CDS 55.0%
GGACGGAAATTCCGACGATG+TGG - chr3_3:38191462-38191481 Msa0451090:CDS 55.0%
ACAGTAGAGGAACGCAAGCG+TGG - chr3_3:38191760-38191779 Msa0451090:CDS 55.0%
! TGCCGCTGACGGGTATGATA+AGG - chr3_3:38192020-38192039 Msa0451090:CDS 55.0%
TGTGGGCAGCGGGTCATATT+CGG - chr3_3:38192703-38192722 Msa0451090:CDS 55.0%
GCTATGAAACGCCTCGCAGT+GGG + chr3_3:38192760-38192779 None:intergenic 55.0%
TCGGTGACCCATTGCATTGC+AGG + chr3_3:38193534-38193553 None:intergenic 55.0%
TGTGGGATTTGCGGTGCATC+TGG - chr3_3:38193569-38193588 Msa0451090:intron 55.0%
!! GATGACACTGGTGACGGCGA+AGG - chr3_3:38191280-38191299 Msa0451090:CDS 60.0%
! GGTGACGGCGAAGGAGATGA+TGG - chr3_3:38191289-38191308 Msa0451090:CDS 60.0%
! GACGGCGAAGGAGATGATGG+TGG - chr3_3:38191292-38191311 Msa0451090:CDS 60.0%
GTGGGCAGCGGGTCATATTC+GGG - chr3_3:38192704-38192723 Msa0451090:CDS 60.0%
GGCTATGAAACGCCTCGCAG+TGG + chr3_3:38192761-38192780 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 38191055 38193691 38191055 ID=Msa0451090;Name=Msa0451090
chr3_3 mRNA 38191055 38193691 38191055 ID=Msa0451090-mRNA-1;Parent=Msa0451090;Name=Msa0451090-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0.33|0|0.75|1|1|4|0|794
chr3_3 exon 38193629 38193691 38193629 ID=Msa0451090-mRNA-1:exon:6895;Parent=Msa0451090-mRNA-1
chr3_3 exon 38193091 38193538 38193091 ID=Msa0451090-mRNA-1:exon:6894;Parent=Msa0451090-mRNA-1
chr3_3 exon 38192245 38193012 38192245 ID=Msa0451090-mRNA-1:exon:6893;Parent=Msa0451090-mRNA-1
chr3_3 exon 38191055 38192160 38191055 ID=Msa0451090-mRNA-1:exon:6892;Parent=Msa0451090-mRNA-1
chr3_3 CDS 38193629 38193691 38193629 ID=Msa0451090-mRNA-1:cds;Parent=Msa0451090-mRNA-1
chr3_3 CDS 38193091 38193538 38193091 ID=Msa0451090-mRNA-1:cds;Parent=Msa0451090-mRNA-1
chr3_3 CDS 38192245 38193012 38192245 ID=Msa0451090-mRNA-1:cds;Parent=Msa0451090-mRNA-1
chr3_3 CDS 38191055 38192160 38191055 ID=Msa0451090-mRNA-1:cds;Parent=Msa0451090-mRNA-1
Gene Sequence

>Msa0451090

ATGGAATCGAATGCAAATGTTGTTGTAGATTCACGTGGAAATGAAGTGATGGAAGCTTATTATCAAAAAATTGATGAGATTAGACATGAGAATGAAGCTGATACGGAAGGGGATGATTATGGTGACGGTGAAGCAGATGACACTGGTGACGGCGAAGGAGATGATGGTGGTGACGGTGAAGGAGATATTGGTGATGATGAAGGTCAGTTATCAGCAGAAGAAAACGAAAGTGATGAAGCTTTCTTAGGTTCTGAATACGATGAAGATGATTATTCCGTTGATGGAGGGGAAATTTCACAAGCAGATGATGAGGATTTGGACGGAAATTCCGACGATGTGGATGAGTCAATATTTTCAGTTCTAAGTGAAGATGAATCAATTGTAATAGACAGTGTTGACGATATTGTAAAGATGGATATGTATAATTTGCAAAATGAAGATGTTTCGAAGCTGCTATTTGGGAGTCTTGAGGTTGCCTACAATTTTTACTGTTGGTTTGCAAAGATGAACGAAGGTTTCAGGAGAGACAGGGGGTTAACAGTAGAGGAACGCAAGCGTGGTCCGAAACATGAAACCAGGTGTGGTTGTGAAGCCAAATTTCGTATGCATATTGATATAATTACTCAACGTTGGTACATCACAGTTTTCACCTTTGATCACAATCATGATATGTTGAGTGAGAAACATTGTGCATTGTTGGCTGCTCATAGGAAGCTAACTAAGTCTGATAAGATTCAAGTTACCAACTTTGGCAATGCCGAAATCAAAGTTACGCAAATGATTGGTGCTTTTGCAAATGCCGCTGACGGGTATGATAAGGTAGGATTTCTGAAAAAGGATTTACACAATCAAATTCTAAGACAAAGAAAAGTGATGTTTTCGAATGCTAAAGGTGCCGTTACGTATCTTAAAGATCTGCGCCGTAAAGATCCATTGATGTTTGTTGCACATACGGTTGGTGTAGATGGTAGGCTACAAAACTTATTCTGGAGTGATGGGGTAAGTCAGAAGAATTTCGAAGTCTTTGGTGATGTATTTGCTTTCGATGCTACTTATAAGAAAAATAAGTACAGTTGTCCATTTGTTGTGTTCTCTGGTGTTAACCACCACAACCAGACAATTATTTTTGCTACCGATATTGTTCCAAATGAAGTTGAAGGGACATATGTGTGGTTGCTTGAGCAGTTATTGGTTGCAATGAAGGGTAAGACTCCCGTATCCGTAACAACAAATGGTGATATAGCAATGAGGAGTGCGATCAAAAAAGTTTTTCCCAAGAGATGTATGCTAGGTGATCATGAAGTTTGGAAATTTGAAAATCTTTGGAATGAAATGGTTGAAAAGTTTGGTCTTCAAGAGAGCAGATGGATAAATGAACTGTATAAGAAAAGGAAAATGTGGGCAGCGGGTCATATTCGGGAAAATTTCTTTGCAGGAATTAGAACAACATCCCACTGCGAGGCGTTTCATAGCCATATGGGTCAGTTTATACACTCGAAGATGAATATGACAGATTTTGTTAAGCACTTCCATAGGTGTGTTTCATATTTACGCTTTAAGGAAGTCCAAGCTGATTTTAATTCTCAATACGGGAGTGCGGTGTTACAGACTAATTTGAGGTCGCTTGAGAGGTCTGCTTCAAATCAATTCACTAAAGAAATATTTGAGATGGTACGAAAAGTCATAAACAAGGTAGCACTAATTTCTATATTAGATACTCAAAATATGTCTTGTTTTACAATTTATTCAATGTCAAAATATAGACAAGAAGGTTATGTTTGGTGTGTTTCTCATAGTCCATCGAACGATGAATTTGCATGTTCTTGTCTTAGTATGGAATCTATTGGAATTCCTTGTGAGCATATCATCGATGTGCTAGTATATCTTGATTTTGACGAAATTCCTAAGTCTTTAGTGCTGAATCGTTGGTCAATATTTGCCAAGGAGTCAATTAGAGGCAATTGCGATGATGGTTCGCATTATTGGGATTCTCATTTGGTTGCTAGGCATGCAAATTTCGTGTATCTTAGTAAGGAGGTTTGCGACCTATCATATAAGGATGTCGATGATTATAAAAAATATTTAGAATATCTAACGGATGAACTTGGTAGGCTAAAGTCAAAGTATGGTGAAGAAGGTGAACCAAATAATTTACAAGTTCCAGTTGAGGTGGATAACATACTGAACCCTTCCTGTTCAAGAAGCAAAGGGTGTGGAGGTAGCTCCTGCAATGCAATGGGTCACCGACGTAGAACACAAACATGTGGGATTTGCGGTGCATCTGGACACAACAGACGATCTTGTCCTACACTTGATGTAGATGGTGAATATGTTCCGGACAATTCCCTTCAAACAGGGTCAGTACGCTTAAGTGATGACGTTTAA
Protein sequence

>Msa0451090

MESNANVVVDSRGNEVMEAYYQKIDEIRHENEADTEGDDYGDGEADDTGDGEGDDGGDGEGDIGDDEGQLSAEENESDEAFLGSEYDEDDYSVDGGEISQADDEDLDGNSDDVDESIFSVLSEDESIVIDSVDDIVKMDMYNLQNEDVSKLLFGSLEVAYNFYCWFAKMNEGFRRDRGLTVEERKRGPKHETRCGCEAKFRMHIDIITQRWYITVFTFDHNHDMLSEKHCALLAAHRKLTKSDKIQVTNFGNAEIKVTQMIGAFANAADGYDKVGFLKKDLHNQILRQRKVMFSNAKGAVTYLKDLRRKDPLMFVAHTVGVDGRLQNLFWSDGVSQKNFEVFGDVFAFDATYKKNKYSCPFVVFSGVNHHNQTIIFATDIVPNEVEGTYVWLLEQLLVAMKGKTPVSVTTNGDIAMRSAIKKVFPKRCMLGDHEVWKFENLWNEMVEKFGLQESRWINELYKKRKMWAAGHIRENFFAGIRTTSHCEAFHSHMGQFIHSKMNMTDFVKHFHRCVSYLRFKEVQADFNSQYGSAVLQTNLRSLERSASNQFTKEIFEMVRKVINKVALISILDTQNMSCFTIYSMSKYRQEGYVWCVSHSPSNDEFACSCLSMESIGIPCEHIIDVLVYLDFDEIPKSLVLNRWSIFAKESIRGNCDDGSHYWDSHLVARHANFVYLSKEVCDLSYKDVDDYKKYLEYLTDELGRLKSKYGEEGEPNNLQVPVEVDNILNPSCSRSKGCGGSSCNAMGHRRRTQTCGICGASGHNRRSCPTLDVDGEYVPDNSLQTGSVRLSDDV*