AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0451550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0451550 MtrunA17_Chr3g0097101 65.992 247 24 4 1 190 1 244 4.12e-104 299
Msa0451550 MtrunA17_Chr2g0284911 45.113 266 64 6 1 190 1 260 9.72e-64 197
Msa0451550 MtrunA17_Chr8g0380021 45.749 247 74 6 1 190 1 244 3.82e-55 175
Msa0451550 MtrunA17_Chr3g0077501 77.528 89 20 0 16 104 1 89 3.71e-46 151
Msa0451550 MtrunA17_Chr3g0122251 51.515 132 47 4 16 146 1 116 1.07e-33 120
Msa0451550 MtrunA17_Chr8g0351041 58.824 102 41 1 16 117 1 101 1.20e-33 117
Msa0451550 MtrunA17_Chr8g0351051 53.846 104 36 1 16 107 1 104 6.67e-33 118
Msa0451550 MtrunA17_Chr7g0246431 54.286 105 43 2 16 115 1 105 7.51e-33 117
Msa0451550 MtrunA17_Chr8g0351031 60.000 105 35 3 16 117 1 101 1.12e-32 117
Msa0451550 MtrunA17_Chr4g0057151 60.674 89 35 0 16 104 1 89 3.74e-32 115
Msa0451550 MtrunA17_Chr5g0420091 47.059 136 50 5 16 149 1 116 4.06e-32 115
Msa0451550 MtrunA17_Chr7g0220111 72.222 72 19 1 16 86 1 72 6.20e-32 115
Msa0451550 MtrunA17_Chr2g0279821 69.014 71 22 0 16 86 1 71 1.81e-31 114
Msa0451550 MtrunA17_Chr4g0061671 56.190 105 42 3 16 116 1 105 2.80e-31 112
Msa0451550 MtrunA17_Chr6g0455511 48.485 132 47 4 16 146 1 112 6.16e-31 113
Msa0451550 MtrunA17_Chr7g0246381 73.770 61 16 0 16 76 1 61 1.05e-29 104
Msa0451550 MtrunA17_Chr8g0366231 49.533 107 48 2 16 116 1 107 3.17e-29 108
Msa0451550 MtrunA17_Chr4g0020221 59.756 82 32 1 16 97 1 81 3.38e-29 108
Msa0451550 MtrunA17_Chr5g0411691 68.116 69 22 0 16 84 1 69 3.83e-29 108
Msa0451550 MtrunA17_Chr8g0377561 79.310 58 12 0 16 73 1 58 5.18e-29 103
Msa0451550 MtrunA17_Chr4g0049541 63.014 73 27 0 16 88 1 73 1.61e-28 106
Msa0451550 MtrunA17_Chr4g0061691 44.737 114 61 2 16 128 1 113 2.35e-28 105
Msa0451550 MtrunA17_Chr1g0204111 60.274 73 29 0 16 88 17 89 7.65e-28 105
Msa0451550 MtrunA17_Chr2g0308251 63.768 69 25 0 16 84 1 69 9.12e-28 100
Msa0451550 MtrunA17_Chr6g0474371 51.042 96 45 2 16 110 1 95 1.24e-27 102
Msa0451550 MtrunA17_Chr4g0018421 58.140 86 34 2 16 100 1 85 1.46e-27 103
Msa0451550 MtrunA17_Chr1g0164791 44.545 110 58 2 16 122 1 110 6.85e-27 102
Msa0451550 MtrunA17_Chr1g0173161 74.576 59 15 0 16 74 1 59 1.00e-26 97.4
Msa0451550 MtrunA17_Chr5g0412461 65.217 69 24 0 16 84 1 69 1.44e-26 101
Msa0451550 MtrunA17_Chr5g0412271 65.217 69 24 0 16 84 1 69 1.89e-26 100
Msa0451550 MtrunA17_Chr3g0125241 44.037 109 52 2 16 122 26 127 3.55e-26 99.8
Msa0451550 MtrunA17_Chr5g0427401 63.768 69 25 0 16 84 1 69 6.55e-26 99.4
Msa0451550 MtrunA17_Chr5g0420081 44.538 119 54 3 16 128 1 113 9.33e-26 99.4
Msa0451550 MtrunA17_Chr7g0220121 61.111 72 27 1 16 86 1 72 1.54e-25 99.0
Msa0451550 MtrunA17_Chr1g0159661 41.525 118 60 2 16 131 1 111 2.93e-25 96.7
Msa0451550 MtrunA17_Chr3g0142191 68.852 61 19 0 16 76 1 61 3.68e-24 94.7
Msa0451550 MtrunA17_Chr5g0404951 46.226 106 55 1 16 119 1 106 4.08e-24 94.7
Msa0451550 MtrunA17_Chr3g0134451 62.857 70 25 1 16 84 1 70 7.85e-24 95.9
Msa0451550 MtrunA17_Chr5g0425191 69.492 59 18 0 16 74 1 59 9.10e-24 90.5
Msa0451550 MtrunA17_Chr4g0049901 46.154 104 49 1 16 112 27 130 4.34e-23 92.4
Msa0451550 MtrunA17_Chr4g0044071 67.241 58 19 0 16 73 1 58 6.56e-23 88.6
Msa0451550 MtrunA17_Chr5g0427921 66.102 59 20 0 16 74 1 59 2.29e-22 85.5
Msa0451550 MtrunA17_Chr2g0292791 41.463 123 62 1 11 123 3 125 1.58e-21 88.2
Msa0451550 MtrunA17_Chr3g0099421 52.703 74 35 0 11 84 28 101 6.00e-20 84.3
Msa0451550 MtrunA17_Chr2g0325971 50.000 74 37 0 11 84 3 76 6.67e-20 83.6
Msa0451550 MtrunA17_Chr1g0208561 45.238 84 46 0 11 94 3 86 8.48e-20 83.2
Msa0451550 MtrunA17_Chr3g0089141 45.238 84 46 0 11 94 3 86 1.02e-19 83.2
Msa0451550 MtrunA17_Chr3g0099411 39.669 121 63 1 11 121 3 123 1.36e-19 82.8
Msa0451550 MtrunA17_Chr1g0206721 39.024 123 65 1 11 123 3 125 1.86e-19 82.8
Msa0451550 MtrunA17_Chr1g0208581 50.000 74 37 0 11 84 3 76 4.41e-19 81.6
Msa0451550 MtrunA17_Chr1g0206701 46.429 84 45 0 11 94 3 86 5.67e-19 81.3
Msa0451550 MtrunA17_Chr1g0169761 41.667 120 63 4 16 129 1 119 5.73e-19 80.1
Msa0451550 MtrunA17_Chr5g0419601 48.649 74 38 0 11 84 3 76 6.49e-19 81.3
Msa0451550 MtrunA17_Chr8g0376821 53.623 69 32 0 16 84 1 69 8.84e-19 79.7
Msa0451550 MtrunA17_Chr1g0206991 38.211 123 66 1 11 123 3 125 1.25e-18 79.3
Msa0451550 MtrunA17_Chr8g0355091 38.843 121 64 1 11 121 3 123 1.44e-18 80.1
Msa0451550 MtrunA17_Chr1g0187361 48.649 74 38 0 11 84 3 76 2.10e-18 79.7
Msa0451550 MtrunA17_Chr1g0188671 48.649 74 38 0 11 84 41 114 2.79e-18 80.1
Msa0451550 MtrunA17_Chr1g0175611 37.288 118 63 2 16 125 1 115 2.80e-18 78.2
Msa0451550 MtrunA17_Chr8g0379021 35.135 148 72 4 13 142 8 149 2.85e-18 78.2
Msa0451550 MtrunA17_Chr8g0356071 38.614 101 57 1 16 111 1 101 3.90e-18 77.4
Msa0451550 MtrunA17_Chr2g0333981 36.752 117 68 1 13 123 8 124 4.52e-18 77.8
Msa0451550 MtrunA17_Chr1g0166611 70.213 47 14 0 28 74 17 63 6.35e-18 76.3
Msa0451550 MtrunA17_Chr1g0149391 47.297 74 39 0 11 84 3 76 1.27e-17 77.8
Msa0451550 MtrunA17_Chr4g0074101 49.275 69 35 0 16 84 1 69 2.55e-17 76.3
Msa0451550 MtrunA17_Chr2g0317451 45.946 74 40 0 11 84 3 76 2.91e-17 76.6
Msa0451550 MtrunA17_Chr2g0317481 45.946 74 40 0 11 84 3 76 2.94e-17 76.6
Msa0451550 MtrunA17_Chr1g0175601 33.803 142 79 3 16 145 1 139 7.17e-17 74.7
Msa0451550 MtrunA17_Chr5g0422421 45.946 74 40 0 11 84 3 76 9.53e-17 75.5
Msa0451550 MtrunA17_Chr8g0357771 49.275 69 35 0 16 84 1 69 1.08e-16 73.9
Msa0451550 MtrunA17_Chr5g0422941 45.946 74 40 0 11 84 3 76 1.12e-16 75.1
Msa0451550 MtrunA17_Chr1g0180591 49.275 69 35 0 16 84 1 69 2.05e-16 73.2
Msa0451550 MtrunA17_Chr5g0417661 54.386 57 26 0 12 68 52 108 2.34e-16 72.0
Msa0451550 MtrunA17_Chr3g0119901 46.377 69 37 0 16 84 8 76 7.77e-16 72.4
Msa0451550 MtrunA17_Chr3g0085241 43.243 74 42 0 11 84 35 108 1.25e-15 72.4
Msa0451550 MtrunA17_Chr2g0300441 43.750 80 43 1 17 94 7 86 1.65e-15 72.0
Msa0451550 MtrunA17_Chr4g0060841 54.717 53 24 0 16 68 1 53 3.06e-15 72.8
Msa0451550 MtrunA17_Chr2g0300421 45.946 74 40 0 11 84 3 76 3.72e-15 70.1
Msa0451550 MtrunA17_Chr4g0052061 44.928 69 38 0 16 84 1 69 3.88e-15 69.3
Msa0451550 MtrunA17_Chr4g0052081 44.928 69 38 0 16 84 1 69 5.86e-15 69.3
Msa0451550 MtrunA17_Chr3g0089151 37.391 115 50 2 11 105 3 115 9.51e-15 67.8
Msa0451550 MtrunA17_Chr4g0018951 40.000 115 67 1 13 125 8 122 4.30e-14 67.0
Msa0451550 MtrunA17_Chr1g0206691 43.478 69 39 0 26 94 1 69 4.88e-13 65.1
Msa0451550 MtrunA17_Chr1g0187351 45.763 59 32 0 26 84 1 59 1.58e-12 60.5
Msa0451550 MtrunA17_Chr3g0111841 44.068 59 33 0 23 81 2 60 3.79e-12 59.3
Msa0451550 MtrunA17_Chr4g0071601 45.333 75 41 0 13 87 8 82 6.36e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0451550 AT3G58780.5 51.417 247 57 7 6 190 9 254 1.73e-68 209
Msa0451550 AT3G58780.1 51.417 247 57 7 6 190 3 248 1.85e-68 209
Msa0451550 AT4G18960.1 48.780 246 63 6 7 190 8 252 2.45e-66 204
Msa0451550 AT2G42830.1 49.593 246 62 6 6 190 2 246 1.21e-65 202
Msa0451550 AT2G42830.2 49.194 248 62 6 6 190 2 248 2.80e-65 201
Msa0451550 AT3G58780.3 46.691 272 57 8 6 190 3 273 1.26e-62 195
Msa0451550 AT3G58780.2 48.988 247 56 8 6 190 3 241 3.10e-61 191
Msa0451550 AT4G09960.1 48.585 212 49 5 16 172 1 207 1.96e-55 175
Msa0451550 AT4G09960.6 48.585 212 49 5 16 172 2 208 2.06e-55 175
Msa0451550 AT4G09960.2 51.515 198 50 6 16 172 1 193 2.14e-55 175
Msa0451550 AT4G09960.5 48.585 212 49 5 16 172 11 217 4.16e-55 175
Msa0451550 AT4G09960.3 48.357 213 50 5 15 172 26 233 5.17e-55 175
Msa0451550 AT3G58780.4 72.222 126 30 2 6 128 3 126 1.27e-54 175
Msa0451550 AT3G58780.4 51.613 93 39 3 103 190 190 281 4.37e-19 82.8
Msa0451550 AT4G09960.4 47.032 219 52 6 15 174 95 308 2.62e-52 171
Msa0451550 AT2G45650.1 67.500 80 24 1 16 93 1 80 1.62e-33 120
Msa0451550 AT2G45660.2 59.551 89 36 0 16 104 1 89 1.93e-33 117
Msa0451550 AT3G02310.2 49.630 135 46 5 16 148 1 115 5.87e-33 117
Msa0451550 AT5G62165.17 70.423 71 21 0 16 86 1 71 7.72e-33 115
Msa0451550 AT5G62165.12 70.423 71 21 0 16 86 1 71 7.72e-33 115
Msa0451550 AT5G62165.11 70.423 71 21 0 16 86 1 71 7.72e-33 115
Msa0451550 AT3G02310.1 49.630 135 46 5 16 148 1 115 8.26e-33 118
Msa0451550 AT2G45660.1 59.551 89 36 0 16 104 1 89 8.43e-33 117
Msa0451550 AT5G15800.1 49.624 133 45 5 16 146 1 113 1.08e-32 117
Msa0451550 AT5G62165.6 70.423 71 21 0 16 86 1 71 1.20e-32 115
Msa0451550 AT5G62165.9 70.423 71 21 0 16 86 1 71 1.20e-32 115
Msa0451550 AT5G62165.7 70.423 71 21 0 16 86 1 71 1.20e-32 115
Msa0451550 AT5G62165.8 70.423 71 21 0 16 86 1 71 1.20e-32 115
Msa0451550 AT5G62165.13 70.423 71 21 0 16 86 1 71 1.20e-32 115
Msa0451550 AT5G15800.2 49.624 133 45 5 16 146 1 113 2.27e-32 117
Msa0451550 AT5G62165.14 70.423 71 21 0 16 86 1 71 2.28e-32 112
Msa0451550 AT4G22950.2 73.239 71 19 0 16 86 1 71 3.10e-32 114
Msa0451550 AT1G24260.1 60.204 98 33 3 16 107 1 98 3.28e-32 116
Msa0451550 AT1G24260.3 48.485 132 51 4 16 146 1 116 5.10e-32 115
Msa0451550 AT5G62165.10 70.423 71 21 0 16 86 1 71 5.58e-32 114
Msa0451550 AT5G62165.4 70.423 71 21 0 16 86 1 71 5.58e-32 114
Msa0451550 AT5G62165.3 70.423 71 21 0 16 86 1 71 5.74e-32 115
Msa0451550 AT5G62165.1 70.423 71 21 0 16 86 1 71 5.74e-32 115
Msa0451550 AT5G62165.2 70.423 71 21 0 16 86 1 71 5.74e-32 115
Msa0451550 AT1G24260.2 48.485 132 51 4 16 146 1 116 6.86e-32 115
Msa0451550 AT4G22950.3 73.239 71 19 0 16 86 1 71 9.51e-32 114
Msa0451550 AT4G22950.1 73.239 71 19 0 16 86 1 71 9.51e-32 114
Msa0451550 AT3G57230.2 53.465 101 37 2 16 116 1 91 2.61e-31 111
Msa0451550 AT2G03710.3 51.887 106 45 2 16 115 1 106 3.79e-31 112
Msa0451550 AT4G11880.2 70.833 72 20 1 16 86 1 72 1.40e-30 110
Msa0451550 AT4G11880.3 70.833 72 20 1 16 86 1 72 1.40e-30 110
Msa0451550 AT3G57230.1 61.039 77 30 0 16 92 1 77 1.64e-30 112
Msa0451550 AT3G57230.4 61.039 77 30 0 16 92 1 77 1.64e-30 112
Msa0451550 AT2G03710.1 62.500 80 28 1 16 93 1 80 1.69e-30 112
Msa0451550 AT2G03710.2 62.500 80 28 1 16 93 1 80 1.84e-30 112
Msa0451550 AT3G61120.1 72.464 69 19 0 16 84 1 69 2.02e-30 112
Msa0451550 AT4G11880.4 70.833 72 20 1 16 86 1 72 2.49e-30 111
Msa0451550 AT4G11880.1 70.833 72 20 1 16 86 1 72 2.49e-30 111
Msa0451550 AT5G13790.2 50.926 108 52 1 16 122 1 108 3.25e-30 112
Msa0451550 AT5G51860.2 69.565 69 21 0 16 84 1 69 2.94e-29 107
Msa0451550 AT5G13790.1 51.376 109 47 2 16 122 1 105 2.95e-29 109
Msa0451550 AT5G51860.1 69.565 69 21 0 16 84 1 69 4.69e-29 107
Msa0451550 AT5G60910.1 50.467 107 47 3 16 116 1 107 2.07e-28 106
Msa0451550 AT2G14210.1 64.384 73 25 1 16 87 1 73 3.25e-28 105
Msa0451550 AT4G37940.3 59.722 72 29 0 16 87 1 72 3.42e-28 104
Msa0451550 AT4G37940.1 59.722 72 29 0 16 87 1 72 4.03e-28 105
Msa0451550 AT4G37940.4 59.722 72 29 0 16 87 1 72 4.23e-28 105
Msa0451550 AT1G69120.2 50.467 107 47 3 16 116 1 107 5.08e-28 105
Msa0451550 AT2G14210.2 64.384 73 25 1 16 87 1 73 5.48e-28 105
Msa0451550 AT5G51870.2 62.500 80 30 0 16 95 1 80 9.48e-28 103
Msa0451550 AT5G51870.1 62.500 80 30 0 16 95 1 80 1.80e-27 103
Msa0451550 AT1G69120.1 50.467 107 47 3 16 116 1 107 2.62e-27 103
Msa0451550 AT1G26310.1 45.872 109 51 2 16 116 1 109 2.86e-27 103
Msa0451550 AT5G51870.5 60.241 83 33 0 13 95 21 103 2.90e-27 102
Msa0451550 AT3G30260.1 46.729 107 51 2 16 116 1 107 3.62e-27 103
Msa0451550 AT5G51870.4 62.500 80 30 0 16 95 1 80 5.02e-27 102
Msa0451550 AT5G51870.3 62.500 80 30 0 16 95 11 90 7.23e-27 102
Msa0451550 AT3G57390.3 56.579 76 33 0 16 91 1 76 1.62e-26 101
Msa0451550 AT2G22630.1 59.722 72 29 0 16 87 1 72 1.96e-26 101
Msa0451550 AT2G22630.2 59.722 72 29 0 16 87 1 72 1.96e-26 101
Msa0451550 AT1G71692.1 53.571 84 38 1 16 98 1 84 4.04e-26 99.8
Msa0451550 AT3G57390.1 56.579 76 33 0 16 91 1 76 4.37e-26 100
Msa0451550 AT5G20240.2 44.954 109 51 2 16 122 1 102 1.35e-24 94.4
Msa0451550 AT5G20240.1 42.735 117 58 2 16 130 1 110 1.36e-24 95.9
Msa0451550 AT5G23260.1 44.737 114 52 3 9 116 6 114 1.41e-24 97.1
Msa0451550 AT5G23260.4 44.737 114 52 3 9 116 6 114 1.50e-24 97.1
Msa0451550 AT5G23260.3 44.954 109 53 2 16 122 1 104 5.73e-24 95.1
Msa0451550 AT5G23260.2 46.602 103 48 2 16 116 1 98 6.57e-24 95.1
Msa0451550 AT2G22540.3 57.971 69 29 0 16 84 1 69 9.28e-24 94.4
Msa0451550 AT2G22540.1 57.971 69 29 0 16 84 1 69 9.28e-24 94.4
Msa0451550 AT5G65070.1 57.143 70 29 1 16 84 1 70 1.49e-23 92.8
Msa0451550 AT5G65070.4 57.143 70 29 1 16 84 1 70 2.18e-23 90.9
Msa0451550 AT1G77980.1 61.429 70 26 1 16 84 1 70 4.41e-23 94.4
Msa0451550 AT5G65070.2 47.475 99 49 2 16 111 1 99 4.96e-23 92.4
Msa0451550 AT5G65070.5 47.475 99 49 2 16 111 1 99 5.20e-23 91.7
Msa0451550 AT1G22130.1 67.213 61 20 0 16 76 1 61 5.34e-23 94.4
Msa0451550 AT3G54340.1 56.944 72 29 1 16 85 1 72 6.25e-23 92.0
Msa0451550 AT5G10140.4 55.000 80 35 1 16 94 1 80 8.26e-23 90.5
Msa0451550 AT5G10140.2 55.000 80 35 1 16 94 1 80 9.71e-23 90.1
Msa0451550 AT5G10140.1 55.000 80 35 1 16 94 1 80 1.05e-22 90.5
Msa0451550 AT4G24540.1 57.971 69 29 0 16 84 1 69 1.24e-22 90.9
Msa0451550 AT5G10140.3 58.333 72 29 1 16 86 1 72 2.06e-22 89.7
Msa0451550 AT5G65070.3 62.712 59 22 0 16 74 1 59 4.57e-22 89.7
Msa0451550 AT5G65080.3 54.930 71 31 1 16 85 8 78 3.27e-21 86.7
Msa0451550 AT5G65050.2 41.964 112 63 2 16 126 1 111 7.91e-21 85.1
Msa0451550 AT5G65050.1 41.964 112 63 2 16 126 1 111 1.26e-20 84.7
Msa0451550 AT5G65050.5 34.545 165 93 5 16 169 1 161 1.30e-20 84.7
Msa0451550 AT5G65050.3 41.964 112 63 2 16 126 1 111 1.35e-20 85.1
Msa0451550 AT2G22540.2 55.072 69 26 1 16 84 1 64 8.38e-20 84.0
Msa0451550 AT5G65060.2 32.727 165 96 5 16 169 1 161 1.10e-19 82.4
Msa0451550 AT1G31140.1 43.689 103 52 2 16 112 1 103 1.23e-19 82.8
Msa0451550 AT5G65080.2 63.636 55 20 0 16 70 8 62 1.39e-19 82.8
Msa0451550 AT5G65060.3 52.857 70 32 1 16 84 1 70 3.38e-19 81.3
Msa0451550 AT5G65060.1 52.857 70 32 1 16 84 1 70 3.44e-19 81.3
Msa0451550 AT1G77950.3 52.857 70 32 1 16 84 1 70 4.05e-19 82.4
Msa0451550 AT1G77950.2 52.857 70 32 1 16 84 1 70 4.05e-19 82.4
Msa0451550 AT1G77950.1 52.857 70 32 1 16 84 1 70 4.05e-19 82.4
Msa0451550 AT1G77950.4 52.857 70 32 1 16 84 1 70 4.05e-19 82.4
Msa0451550 AT1G31140.2 50.000 82 39 1 16 95 1 82 4.42e-19 81.6
Msa0451550 AT1G01530.1 32.609 138 77 2 12 149 2 123 4.18e-18 79.7
Msa0451550 AT1G18750.4 62.264 53 20 0 16 68 1 53 2.63e-17 79.0
Msa0451550 AT1G18750.1 62.264 53 20 0 16 68 1 53 2.91e-17 79.0
Msa0451550 AT1G65360.1 32.773 119 78 2 13 130 3 120 3.43e-17 76.6
Msa0451550 AT1G18750.3 62.264 53 20 0 16 68 1 53 3.57e-17 79.0
Msa0451550 AT4G36590.1 51.471 68 33 0 17 84 7 74 7.69e-17 76.3
Msa0451550 AT4G37435.1 57.895 57 24 0 16 72 1 57 9.45e-17 74.7
Msa0451550 AT5G60440.1 48.611 72 37 0 13 84 3 74 1.10e-16 76.6
Msa0451550 AT2G34440.1 39.535 86 52 0 16 101 1 86 1.39e-16 73.9
Msa0451550 AT1G77080.5 57.143 70 29 1 16 84 1 70 1.43e-16 73.9
Msa0451550 AT1G77080.11 57.143 70 29 1 16 84 1 70 1.66e-16 73.9
Msa0451550 AT1G77080.4 57.143 70 29 1 16 84 1 70 2.72e-16 73.9
Msa0451550 AT3G66656.1 47.143 70 37 0 16 85 1 70 3.21e-16 73.2
Msa0451550 AT1G72350.1 54.412 68 29 1 17 84 43 108 3.59e-16 73.9
Msa0451550 AT1G77080.8 42.609 115 62 2 16 126 1 115 4.67e-16 73.6
Msa0451550 AT2G03060.3 58.491 53 22 0 16 68 1 53 5.32e-16 75.5
Msa0451550 AT2G03060.7 58.491 53 22 0 16 68 1 53 5.32e-16 75.5
Msa0451550 AT2G03060.1 58.491 53 22 0 16 68 1 53 5.32e-16 75.5
Msa0451550 AT2G03060.2 58.491 53 22 0 16 68 1 53 6.40e-16 75.1
Msa0451550 AT1G77080.12 54.054 74 33 1 16 88 1 74 1.56e-15 70.5
Msa0451550 AT4G18960.3 45.833 96 43 4 103 190 144 238 1.91e-15 72.4
Msa0451550 AT4G18960.2 45.833 96 43 4 103 190 144 238 1.91e-15 72.4
Msa0451550 AT1G77080.2 54.054 74 33 1 16 88 1 74 2.60e-15 71.2
Msa0451550 AT2G24840.1 44.928 69 38 0 16 84 62 130 2.75e-15 72.4
Msa0451550 AT1G47760.1 44.737 76 42 0 16 91 1 76 1.78e-14 68.6
Msa0451550 AT3G04100.1 38.961 77 47 0 9 85 6 82 1.82e-14 68.9
Msa0451550 AT1G69540.1 52.830 53 25 0 16 68 1 53 5.55e-14 69.3
Msa0451550 AT1G69540.2 52.830 53 25 0 16 68 1 53 8.97e-14 68.9
Msa0451550 AT1G29962.1 44.444 72 40 0 13 84 4 75 9.21e-14 66.6
Msa0451550 AT1G28460.1 44.444 72 40 0 13 84 4 75 1.06e-13 66.6
Msa0451550 AT1G28450.1 40.278 72 43 0 13 84 4 75 7.39e-12 61.6

Find 43 sgRNAs with CRISPR-Local

Find 445 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCACAGCTTTGCAAAATA+TGG 0.168262 3_3:-39713486 Msa0451550:intron
GTAGATTAATAAACGGTTTC+AGG 0.214301 3_3:+39705557 None:intergenic
AGGATCTTCTCAAAAGAAAA+TGG 0.218426 3_3:-39713441 Msa0451550:CDS
TTCTTTCCGGTAAATCTTCT+TGG 0.243928 3_3:-39706533 Msa0451550:CDS
ATGATATATATGCTGGAAAA+AGG 0.288304 3_3:-39705601 Msa0451550:three_prime_UTR
GATTTACCGGAAAGAAATTT+CGG 0.349244 3_3:+39706540 None:intergenic
AGATACAGATTCTGCGTTAG+TGG 0.372608 3_3:+39709476 None:intergenic
TAGCTCGTAGATAATTGTTA+TGG 0.380639 3_3:+39706769 None:intergenic
ATATGACCGAAATTTCTTTC+CGG 0.382195 3_3:-39706546 Msa0451550:CDS
AAAAGTAGGCATGTATATAA+TGG 0.390146 3_3:+39705496 None:intergenic
TCTGATCCAAGAAGATTTAC+CGG 0.399583 3_3:+39706527 None:intergenic
CGGTCATATGCTTGTGATGA+AGG 0.400301 3_3:+39706560 None:intergenic
ACTAGCTATATGTAGTTGTT+TGG 0.409086 3_3:+39713857 None:intergenic
TGATCACACATTGTTTGATC+TGG 0.410170 3_3:+39706590 None:intergenic
GATCCTTCTCCACCTTCATT+TGG 0.416333 3_3:+39713458 None:intergenic
ACACAAGTTGGAGAGCAGTT+TGG 0.440240 3_3:+39706480 None:intergenic
TGTATGAATATGCCAACAAC+AGG 0.477767 3_3:-39713262 Msa0451550:intron
TGAGACATTGTTTGCTGATG+TGG 0.479702 3_3:-39708292 Msa0451550:CDS
GGATCTTCTCAAAAGAAAAT+GGG 0.486264 3_3:-39713440 Msa0451550:CDS
TATTCAAGTAGATTAATAAA+CGG 0.490737 3_3:+39705550 None:intergenic
GGATTGAAAACACTACCAAT+AGG 0.493244 3_3:-39713394 Msa0451550:CDS
ATAGCTAGTGCAAATTCATA+AGG 0.498144 3_3:-39713843 Msa0451550:intron
TGTAAACTCAAACCTGTTGT+TGG 0.501282 3_3:+39713250 None:intergenic
ATATGCTTGTGATGAAGGTA+AGG 0.525429 3_3:+39706565 None:intergenic
CATAGTTAATTAGTAAAAGT+AGG 0.532422 3_3:+39705482 None:intergenic
ATATGAATGCTTACACAAGT+TGG 0.536621 3_3:+39706468 None:intergenic
CTACCAAATGAAGGTGGAGA+AGG 0.538882 3_3:-39713461 Msa0451550:CDS
TCTCAAAAGAAAATGGGAAG+AGG 0.543069 3_3:-39713434 Msa0451550:CDS
GAGGGAAAATTGAAATCAAG+AGG 0.543111 3_3:-39713415 Msa0451550:CDS
CTCAAAAGAAAATGGGAAGA+GGG 0.561170 3_3:-39713433 Msa0451550:CDS
GCAGGTGATGATATATATGC+TGG 0.565404 3_3:-39705608 Msa0451550:intron
TAACAATTATCTACGAGCTA+AGG 0.568340 3_3:-39706766 Msa0451550:intron
AATATGGAGCTACCAAATGA+AGG 0.573967 3_3:-39713470 Msa0451550:CDS
CTTGTTGTCTTCTCAACCCG+CGG 0.581410 3_3:-39713290 Msa0451550:CDS
TGTATCTGAAGCTAATACCC+AGG 0.584785 3_3:-39709460 Msa0451550:intron
CGCGGGTTGAGAAGACAACA+AGG 0.596947 3_3:+39713291 None:intergenic
TGTGGAGTTCATGCAAAAGC+GGG 0.598411 3_3:-39708274 Msa0451550:intron
CATATTCATACAAGCGACCG+CGG 0.601106 3_3:+39713273 None:intergenic
GTGTTAGAGCAACTATTGAA+AGG 0.619419 3_3:-39709521 Msa0451550:CDS
ATGTGGAGTTCATGCAAAAG+CGG 0.623084 3_3:-39708275 Msa0451550:CDS
ATATTCATACAAGCGACCGC+GGG 0.626111 3_3:+39713274 None:intergenic
ATGGAGCTACCAAATGAAGG+TGG 0.637434 3_3:-39713467 Msa0451550:CDS
GCGGGTTGAGAAGACAACAA+GGG 0.777562 3_3:+39713292 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTAAAATTATAATTTT+TGG - chr3_3:39710806-39710825 Msa0451550:intron 0.0%
!!! TAAGTTTATTTTTATTTTTG+TGG - chr3_3:39706434-39706453 Msa0451550:intron 10.0%
!! TTTACACTAAAATTATTTAA+GGG + chr3_3:39706933-39706952 None:intergenic 10.0%
!!! TTTTACACTAAAATTATTTA+AGG + chr3_3:39706934-39706953 None:intergenic 10.0%
!!! TTTTATAAAAAATAATTGTC+AGG - chr3_3:39707824-39707843 Msa0451550:intron 10.0%
!! ATAATTAACTTATTCATATA+AGG + chr3_3:39708135-39708154 None:intergenic 10.0%
!!! TAAAAAATTATCTATCATTT+TGG + chr3_3:39709592-39709611 None:intergenic 10.0%
!! AATTAAAACCATATAATATA+TGG - chr3_3:39710025-39710044 Msa0451550:intron 10.0%
!!! ATAATTTTAAAGTAACAAAA+AGG + chr3_3:39710075-39710094 None:intergenic 10.0%
!! TTGATTAATTATTCAATTAA+TGG + chr3_3:39710246-39710265 None:intergenic 10.0%
!! AAATTATAAAAATGAAAAGA+TGG - chr3_3:39711353-39711372 Msa0451550:intron 10.0%
!!! GATAATATTTTTTTTTTTGA+AGG + chr3_3:39712162-39712181 None:intergenic 10.0%
!!! ATAATCCAATTTTAAATTAA+TGG - chr3_3:39712342-39712361 Msa0451550:intron 10.0%
!! ATAAAAGTTTCATATTTCAA+TGG - chr3_3:39705759-39705778 Msa0451550:intron 15.0%
!! AAACATTAAATGATTGAATA+AGG - chr3_3:39705807-39705826 Msa0451550:intron 15.0%
!! TGATATATAAAAAAACTTTG+TGG - chr3_3:39706306-39706325 Msa0451550:intron 15.0%
!! GATATATAAAAAAACTTTGT+GGG - chr3_3:39706307-39706326 Msa0451550:intron 15.0%
!! ACTATAATATAGTTCAAATT+TGG - chr3_3:39707172-39707191 Msa0451550:intron 15.0%
!!! TGGAAACTTATTTAAATTTT+TGG - chr3_3:39707691-39707710 Msa0451550:intron 15.0%
!!! TTTTTTTTTTCTTTTCCAAT+TGG + chr3_3:39708779-39708798 None:intergenic 15.0%
!!! TTTTGTCATATATTTTTTCT+TGG + chr3_3:39708914-39708933 None:intergenic 15.0%
!!! TCTAACTTAAAATTGTTTTT+AGG + chr3_3:39709031-39709050 None:intergenic 15.0%
!!! AAAACAATTTTAAGTTAGAT+TGG - chr3_3:39709032-39709051 Msa0451550:intron 15.0%
!! TAGAAAGTTATTAGTATTAT+TGG - chr3_3:39709209-39709228 Msa0451550:intron 15.0%
!! AACTTTAATAATTGAGAATA+AGG + chr3_3:39709688-39709707 None:intergenic 15.0%
!!! CCTAATTCTATATATTTTTT+TGG + chr3_3:39710418-39710437 None:intergenic 15.0%
!! CCAAAAAAATATATAGAATT+AGG - chr3_3:39710415-39710434 Msa0451550:intron 15.0%
!!! ATGACTTGATTTATTTTTAA+GGG + chr3_3:39710670-39710689 None:intergenic 15.0%
!!! TATGACTTGATTTATTTTTA+AGG + chr3_3:39710671-39710690 None:intergenic 15.0%
!! TTTAAAAAAATATTTGCAGT+TGG - chr3_3:39710896-39710915 Msa0451550:intron 15.0%
!! TTAAAAAAATATTTGCAGTT+GGG - chr3_3:39710897-39710916 Msa0451550:intron 15.0%
!! AAAAGAAATAAAATCTAACA+AGG + chr3_3:39711006-39711025 None:intergenic 15.0%
!!! TTGTTAGATTTTATTTCTTT+TGG - chr3_3:39711005-39711024 Msa0451550:intron 15.0%
!!! TTCAATAAGAAATATTTTGT+TGG - chr3_3:39711189-39711208 Msa0451550:intron 15.0%
!!! TAATTTTGAATAGAAAACAT+CGG + chr3_3:39711479-39711498 None:intergenic 15.0%
!!! CTTAATATATTGACTATAAA+TGG + chr3_3:39712064-39712083 None:intergenic 15.0%
!!! TGTTTATTTTACATTTACAA+GGG + chr3_3:39712199-39712218 None:intergenic 15.0%
!!! ATGTTTATTTTACATTTACA+AGG + chr3_3:39712200-39712219 None:intergenic 15.0%
!!! TTCATTTTAATTAGCATTAT+TGG + chr3_3:39713592-39713611 None:intergenic 15.0%
!! TATTCAAGTAGATTAATAAA+CGG + chr3_3:39713808-39713827 None:intergenic 15.0%
!! TAACTATATGTATTAAGCAA+TGG + chr3_3:39705543-39705562 None:intergenic 20.0%
!! AGAGAAGAATGAAAAATTTA+GGG + chr3_3:39705588-39705607 None:intergenic 20.0%
!! AAGAGAAGAATGAAAAATTT+AGG + chr3_3:39705589-39705608 None:intergenic 20.0%
!! AATGATTGAATAAGGAAATT+AGG - chr3_3:39705815-39705834 Msa0451550:intron 20.0%
!! ATGATTGAATAAGGAAATTA+GGG - chr3_3:39705816-39705835 Msa0451550:intron 20.0%
!!! ATCTTGATGTTTGTTATTAA+TGG - chr3_3:39706196-39706215 Msa0451550:intron 20.0%
!!! TTGTCAATTTTTTACTCTTT+TGG - chr3_3:39706392-39706411 Msa0451550:intron 20.0%
!! TATATTGGAAAAAGAACAAA+AGG + chr3_3:39706512-39706531 None:intergenic 20.0%
!!! TTGTTCTTTTTCCAATATAT+TGG - chr3_3:39706513-39706532 Msa0451550:CDS 20.0%
!!! TTTTCAAAGTTCCAATATAT+TGG + chr3_3:39706527-39706546 None:intergenic 20.0%
!! TGAAAAAAGGTTAATAGTAT+GGG + chr3_3:39706643-39706662 None:intergenic 20.0%
!! TTGAAAAAAGGTTAATAGTA+TGG + chr3_3:39706644-39706663 None:intergenic 20.0%
!! TATAGATAAATTGATACGAA+GGG + chr3_3:39706875-39706894 None:intergenic 20.0%
!! TTATAGATAAATTGATACGA+AGG + chr3_3:39706876-39706895 None:intergenic 20.0%
!! TTCGTATCAATTTATCTATA+AGG - chr3_3:39706875-39706894 Msa0451550:intron 20.0%
!!! ATTGATTTTCCATTCTAAAA+AGG - chr3_3:39707001-39707020 Msa0451550:intron 20.0%
!!! TTGATTTTCCATTCTAAAAA+GGG - chr3_3:39707002-39707021 Msa0451550:intron 20.0%
!!! AAAAGGGTATTGTAAAATAT+TGG - chr3_3:39707018-39707037 Msa0451550:intron 20.0%
!! TGTTCATTAATTGATGAATT+TGG - chr3_3:39707149-39707168 Msa0451550:intron 20.0%
!! TATTTACTTATAATAGTGAC+CGG - chr3_3:39707232-39707251 Msa0451550:intron 20.0%
!! AATCATATAGGTAAAGATAA+TGG + chr3_3:39707409-39707428 None:intergenic 20.0%
!!! GATTTTATAGTTTTTCACTA+AGG - chr3_3:39707740-39707759 Msa0451550:intron 20.0%
!!! CAAAATACATTATTGATAGT+AGG + chr3_3:39708068-39708087 None:intergenic 20.0%
!!! CTACTATCAATAATGTATTT+TGG - chr3_3:39708066-39708085 Msa0451550:intron 20.0%
!!! AGAAATTAATGAAAAGTGTA+CGG - chr3_3:39708294-39708313 Msa0451550:CDS 20.0%
!! TCATGTATACAAATCTTTAA+AGG - chr3_3:39708398-39708417 Msa0451550:intron 20.0%
!! CATGTATACAAATCTTTAAA+GGG - chr3_3:39708399-39708418 Msa0451550:intron 20.0%
!! TGTTATATAAGAAGAGAAAA+AGG - chr3_3:39708439-39708458 Msa0451550:intron 20.0%
!! GTTATATAAGAAGAGAAAAA+GGG - chr3_3:39708440-39708459 Msa0451550:intron 20.0%
!! AACATCATTAATTAGAGTAT+AGG - chr3_3:39708689-39708708 Msa0451550:intron 20.0%
!! ACATCATTAATTAGAGTATA+GGG - chr3_3:39708690-39708709 Msa0451550:intron 20.0%
!!! TAGACTTTGTAATAGATTTT+GGG + chr3_3:39708718-39708737 None:intergenic 20.0%
!!! TTAGACTTTGTAATAGATTT+TGG + chr3_3:39708719-39708738 None:intergenic 20.0%
!!! TAAATAGCTTTTTGTTTGTT+TGG + chr3_3:39708945-39708964 None:intergenic 20.0%
!!! TGTTTTTAGGTAAATACTTT+GGG + chr3_3:39709018-39709037 None:intergenic 20.0%
!!! TTGTTTTTAGGTAAATACTT+TGG + chr3_3:39709019-39709038 None:intergenic 20.0%
!!! TTTTAAGTTAGATTGGATAA+AGG - chr3_3:39709039-39709058 Msa0451550:intron 20.0%
!! AGTTATTAGTATTATTGGAT+TGG - chr3_3:39709214-39709233 Msa0451550:intron 20.0%
!!! GTAGTTTTTTGGTTTTATTT+CGG - chr3_3:39709251-39709270 Msa0451550:intron 20.0%
!! CAAAAAAATCAAGACAATAT+AGG + chr3_3:39709549-39709568 None:intergenic 20.0%
!!! AGAAAGATTATCTATCATTT+TGG + chr3_3:39709634-39709653 None:intergenic 20.0%
!! TTTGCTTGGAAATATATATT+AGG + chr3_3:39709753-39709772 None:intergenic 20.0%
!! GTGTATAAATTTAATTACCT+GGG + chr3_3:39709915-39709934 None:intergenic 20.0%
!! TGTGTATAAATTTAATTACC+TGG + chr3_3:39709916-39709935 None:intergenic 20.0%
!!! GAATTGAATGTATTTTCATA+CGG + chr3_3:39709955-39709974 None:intergenic 20.0%
!! TTGATTGTATATTAATTCCA+TGG + chr3_3:39710598-39710617 None:intergenic 20.0%
!! AACGATATGACAATTATTTA+AGG - chr3_3:39710616-39710635 Msa0451550:intron 20.0%
!!! GCATTCTGAATTATTTTTTT+TGG + chr3_3:39710696-39710715 None:intergenic 20.0%
!!! ATTGCTTATTATTTTACTGA+AGG + chr3_3:39711299-39711318 None:intergenic 20.0%
!!! TTTTCTATTCAAAATTACTC+CGG - chr3_3:39711482-39711501 Msa0451550:intron 20.0%
!!! GCAAACTTTTATTTAAAATG+AGG - chr3_3:39712018-39712037 Msa0451550:intron 20.0%
!! ATGAGGTTAATGTATATATT+TGG - chr3_3:39712035-39712054 Msa0451550:intron 20.0%
!! TGAAATTAATTACATATGCA+GGG + chr3_3:39712122-39712141 None:intergenic 20.0%
!! TTGAAATTAATTACATATGC+AGG + chr3_3:39712123-39712142 None:intergenic 20.0%
!!! CCAATTTTAAATTAATGGTT+CGG - chr3_3:39712347-39712366 Msa0451550:intron 20.0%
!!! TTAGAATTTTTTTGAACAGT+CGG - chr3_3:39712375-39712394 Msa0451550:intron 20.0%
!! ATATAAATGTGATTTCTCAA+TGG + chr3_3:39712656-39712675 None:intergenic 20.0%
!! TATTATAAAAAGCTGTTGAA+TGG - chr3_3:39712692-39712711 Msa0451550:intron 20.0%
!!! ACTTTTACGTATTAAATCAA+GGG - chr3_3:39713091-39713110 Msa0451550:intron 20.0%
!! TTTCATTCTTCTCTTTTTGA+TGG - chr3_3:39705594-39705613 Msa0451550:three_prime_UTR 25.0%
! TTCATATTTCAATGGTTGAA+TGG - chr3_3:39705767-39705786 Msa0451550:intron 25.0%
!! TAAGAATCTTGAAGATTTTG+AGG + chr3_3:39706141-39706160 None:intergenic 25.0%
! AGAGTAAAAAATTGACAAAC+TGG + chr3_3:39706390-39706409 None:intergenic 25.0%
! CTGAAATAAGAGATAGAAAT+AGG - chr3_3:39706557-39706576 Msa0451550:CDS 25.0%
! AACGAAAAAGGATTGAAAAA+AGG + chr3_3:39706656-39706675 None:intergenic 25.0%
! TTCTTGTCCAATTGAAAATT+AGG - chr3_3:39706781-39706800 Msa0451550:CDS 25.0%
! TCTTGTCCAATTGAAAATTA+GGG - chr3_3:39706782-39706801 Msa0451550:CDS 25.0%
!! TTGAAACCCTAATTTTCAAT+TGG + chr3_3:39706791-39706810 None:intergenic 25.0%
!! CCTTTTAACAAAGATATGAA+GGG + chr3_3:39706838-39706857 None:intergenic 25.0%
!! TCCTTTTAACAAAGATATGA+AGG + chr3_3:39706839-39706858 None:intergenic 25.0%
!!! TTACAATACCCTTTTTAGAA+TGG + chr3_3:39707013-39707032 None:intergenic 25.0%
! TTCCTTATAATAGTGATCAA+TGG + chr3_3:39707111-39707130 None:intergenic 25.0%
!!! ATTTTTTCAAATAATCCCTC+CGG + chr3_3:39707254-39707273 None:intergenic 25.0%
! TCAAGATGTAATTATGAAAG+AGG - chr3_3:39707277-39707296 Msa0451550:intron 25.0%
! ATAGGTACAGATAATCATAT+AGG + chr3_3:39707421-39707440 None:intergenic 25.0%
!! ACTTTTACAGATCAACATAT+AGG + chr3_3:39707439-39707458 None:intergenic 25.0%
! AGATTAAATTTATGAAGGTG+GGG + chr3_3:39707474-39707493 None:intergenic 25.0%
! CAGATTAAATTTATGAAGGT+GGG + chr3_3:39707475-39707494 None:intergenic 25.0%
! ACAGATTAAATTTATGAAGG+TGG + chr3_3:39707476-39707495 None:intergenic 25.0%
! AGGACAGATTAAATTTATGA+AGG + chr3_3:39707479-39707498 None:intergenic 25.0%
!!! TTAATCTGTCCTTTAGAATA+TGG - chr3_3:39707487-39707506 Msa0451550:intron 25.0%
! TAGTATGAATTATGAGGTTA+TGG + chr3_3:39707670-39707689 None:intergenic 25.0%
! AACCTCATAATTCATACTAA+TGG - chr3_3:39707671-39707690 Msa0451550:intron 25.0%
! TTCCATTAGTATGAATTATG+AGG + chr3_3:39707676-39707695 None:intergenic 25.0%
!!! AAATTTTTGGTCCAATACTA+AGG - chr3_3:39707704-39707723 Msa0451550:intron 25.0%
!!! ATGATAGTGTTATTTTTCTG+CGG - chr3_3:39707777-39707796 Msa0451550:intron 25.0%
! TTCAATTTCTTTCATGCTTA+TGG - chr3_3:39708009-39708028 Msa0451550:intron 25.0%
! TATATAAGACTCATTGCAAA+AGG - chr3_3:39708152-39708171 Msa0451550:intron 25.0%
! AAATGAAACTTCATATACAC+AGG - chr3_3:39708205-39708224 Msa0451550:intron 25.0%
!! TCAACTTCAGAATTTTTCAT+TGG + chr3_3:39708321-39708340 None:intergenic 25.0%
!!! CATGATTTTTGTTTTAGCTT+CGG + chr3_3:39708383-39708402 None:intergenic 25.0%
! TATTATTACACCATGTTGAA+TGG - chr3_3:39708479-39708498 Msa0451550:intron 25.0%
!! GAAATTTTTGTTCATGAAAC+TGG + chr3_3:39708607-39708626 None:intergenic 25.0%
!!! TTTTTTTCTTTTCCAATTGG+TGG + chr3_3:39708776-39708795 None:intergenic 25.0%
! TTCAATCATTACAAAGAAGA+CGG - chr3_3:39708872-39708891 Msa0451550:intron 25.0%
! GTAAAATCTTCTTCATTGAA+GGG + chr3_3:39709082-39709101 None:intergenic 25.0%
! ATGAGAAACAATGATTGATA+AGG + chr3_3:39709322-39709341 None:intergenic 25.0%
! ATAATTGAGAATAAGGAAAC+TGG + chr3_3:39709681-39709700 None:intergenic 25.0%
!!! GTCACAATTTTTTTTACATG+AGG + chr3_3:39710053-39710072 None:intergenic 25.0%
!!! CTTTAAAATTATCATCCACA+AGG - chr3_3:39710083-39710102 Msa0451550:intron 25.0%
! ATTGATCCAATTGTAAGAAA+TGG - chr3_3:39710525-39710544 Msa0451550:intron 25.0%
! ACAAATCCATTTCTTACAAT+TGG + chr3_3:39710534-39710553 None:intergenic 25.0%
!!! TCAGAATGCATATTTTTTGA+AGG - chr3_3:39710707-39710726 Msa0451550:intron 25.0%
! AGAAATAAAATCTAACAAGG+AGG + chr3_3:39711003-39711022 None:intergenic 25.0%
!! ATTTGTATTTCTAAAGAGAG+TGG + chr3_3:39711330-39711349 None:intergenic 25.0%
! GAGAGAAAATTTAACAAACT+TGG + chr3_3:39711715-39711734 None:intergenic 25.0%
!!! TGGGTAAGAATTTTTTAGAA+AGG - chr3_3:39711768-39711787 Msa0451550:intron 25.0%
!!! GGGTAAGAATTTTTTAGAAA+GGG - chr3_3:39711769-39711788 Msa0451550:intron 25.0%
!!! ACGGAGAAATTTTTTTGAAT+GGG + chr3_3:39711918-39711937 None:intergenic 25.0%
! ACTTGTTCTATTAGTATGAT+GGG + chr3_3:39711964-39711983 None:intergenic 25.0%
!! TACTAATAGAACAAGTGTTT+TGG - chr3_3:39711968-39711987 Msa0451550:intron 25.0%
! GGTCGAAATATATTGATATA+GGG + chr3_3:39712101-39712120 None:intergenic 25.0%
!! CCGAACCATTAATTTAAAAT+TGG + chr3_3:39712350-39712369 None:intergenic 25.0%
! ACAATTACATTACAAGTTGT+AGG + chr3_3:39712468-39712487 None:intergenic 25.0%
! AGTATTTGAATGAATCTAAC+AGG + chr3_3:39712519-39712538 None:intergenic 25.0%
! GATTCATTCAAATACTTACA+TGG - chr3_3:39712523-39712542 Msa0451550:intron 25.0%
!! ACTTACATGGTAAATTTTGT+TGG - chr3_3:39712536-39712555 Msa0451550:intron 25.0%
!!! AAATTTTGTTGGTAATTTGC+AGG - chr3_3:39712547-39712566 Msa0451550:intron 25.0%
!!! CGTTTTACTTTTACTTTTCT+TGG - chr3_3:39713029-39713048 Msa0451550:intron 25.0%
! TGATTTAATACGTAAAAGTC+AGG + chr3_3:39713090-39713109 None:intergenic 25.0%
!! GACTTTTACGTATTAAATCA+AGG - chr3_3:39713090-39713109 Msa0451550:intron 25.0%
! AGAAAAAAGAGTAGTCTATT+CGG + chr3_3:39713163-39713182 None:intergenic 25.0%
! TAATATTAAAAGCGGTAAGA+GGG + chr3_3:39713306-39713325 None:intergenic 25.0%
! TTAATATTAAAAGCGGTAAG+AGG + chr3_3:39713307-39713326 None:intergenic 25.0%
!!! CTTACCGCTTTTAATATTAA+TGG - chr3_3:39713307-39713326 Msa0451550:CDS 25.0%
! CACACCATTAATATTAAAAG+CGG + chr3_3:39713314-39713333 None:intergenic 25.0%
!! TCATTGTTTTCTCATAAGAT+TGG - chr3_3:39713692-39713711 Msa0451550:intron 25.0%
! ATGATATATATGCTGGAAAA+AGG - chr3_3:39713754-39713773 Msa0451550:intron 25.0%
! AAAAGTAGGCATGTATATAA+TGG + chr3_3:39713862-39713881 None:intergenic 25.0%
ACTAGCTATATGTAGTTGTT+TGG + chr3_3:39705501-39705520 None:intergenic 30.0%
ATAGCTAGTGCAAATTCATA+AGG - chr3_3:39705512-39705531 Msa0451550:three_prime_UTR 30.0%
! AGATCACACTAATTTTTGCA+AGG - chr3_3:39705637-39705656 Msa0451550:intron 30.0%
TCAAAGAAGAAGAAGAAGAA+GGG + chr3_3:39705680-39705699 None:intergenic 30.0%
ATCAAAGAAGAAGAAGAAGA+AGG + chr3_3:39705681-39705700 None:intergenic 30.0%
AAGGAAATTAGGGATTAACT+TGG - chr3_3:39705826-39705845 Msa0451550:intron 30.0%
TTTCACAGCTTTGCAAAATA+TGG - chr3_3:39705869-39705888 Msa0451550:intron 30.0%
AGGATCTTCTCAAAAGAAAA+TGG - chr3_3:39705914-39705933 Msa0451550:intron 30.0%
GGATCTTCTCAAAAGAAAAT+GGG - chr3_3:39705915-39705934 Msa0451550:intron 30.0%
AAAACTTTGTGGGATTTATG+AGG - chr3_3:39706317-39706336 Msa0451550:intron 30.0%
AAAGAGAGAGAAAACGAAAA+AGG + chr3_3:39706668-39706687 None:intergenic 30.0%
CATGGTTGATTACATATGTA+GGG + chr3_3:39706691-39706710 None:intergenic 30.0%
TCATGGTTGATTACATATGT+AGG + chr3_3:39706692-39706711 None:intergenic 30.0%
! GCAGATTTTTCTAAGTTTCA+TGG + chr3_3:39706709-39706728 None:intergenic 30.0%
!! AATGATGATGGAAATGAAGA+GGG + chr3_3:39706759-39706778 None:intergenic 30.0%
ACAAAGATATGAAGGGATTA+GGG + chr3_3:39706831-39706850 None:intergenic 30.0%
AACAAAGATATGAAGGGATT+AGG + chr3_3:39706832-39706851 None:intergenic 30.0%
CCCTTCATATCTTTGTTAAA+AGG - chr3_3:39706835-39706854 Msa0451550:intron 30.0%
CTCCATTGATCACTATTATA+AGG - chr3_3:39707106-39707125 Msa0451550:intron 30.0%
AACTACAGACCATATTCTAA+AGG + chr3_3:39707499-39707518 None:intergenic 30.0%
TTAGAATATGGTCTGTAGTT+AGG - chr3_3:39707499-39707518 Msa0451550:intron 30.0%
TAGAATATGGTCTGTAGTTA+GGG - chr3_3:39707500-39707519 Msa0451550:intron 30.0%
TTCCACAACAAATTAACTTC+TGG - chr3_3:39707567-39707586 Msa0451550:intron 30.0%
!! TACCAGAAGTTAATTTGTTG+TGG + chr3_3:39707572-39707591 None:intergenic 30.0%
!!! TGATAGTGTTATTTTTCTGC+GGG - chr3_3:39707778-39707797 Msa0451550:intron 30.0%
! GAAAAGCATAAGAAAGAGAA+GGG + chr3_3:39707992-39708011 None:intergenic 30.0%
! TGAAAAGCATAAGAAAGAGA+AGG + chr3_3:39707993-39708012 None:intergenic 30.0%
ATGTTGTGTCAGTAAGAAAT+GGG + chr3_3:39708349-39708368 None:intergenic 30.0%
!! CAAATCTTTAAAGGGTATTG+TGG - chr3_3:39708407-39708426 Msa0451550:intron 30.0%
!! TTTGTTTCTACTCTTCCTAT+GGG - chr3_3:39708802-39708821 Msa0451550:intron 30.0%
ATGATCTTGATTTAACCCAT+AGG + chr3_3:39708820-39708839 None:intergenic 30.0%
AAAGCTATTTAACGAGACAA+AGG - chr3_3:39708954-39708973 Msa0451550:intron 30.0%
TATTTAACGAGACAAAGGAA+GGG - chr3_3:39708959-39708978 Msa0451550:intron 30.0%
TTCCATTACCCAATTATAGA+AGG - chr3_3:39708982-39709001 Msa0451550:intron 30.0%
TGAAGGGTTCTTCTTTATTA+GGG + chr3_3:39709066-39709085 None:intergenic 30.0%
TTGAAGGGTTCTTCTTTATT+AGG + chr3_3:39709067-39709086 None:intergenic 30.0%
GGTAAAATCTTCTTCATTGA+AGG + chr3_3:39709083-39709102 None:intergenic 30.0%
ATAAAATCTACAGAGTTAGG+TGG + chr3_3:39709104-39709123 None:intergenic 30.0%
GGAATAAAATCTACAGAGTT+AGG + chr3_3:39709107-39709126 None:intergenic 30.0%
AGGGTTGAAAGCTTATTAAT+CGG + chr3_3:39709167-39709186 None:intergenic 30.0%
ATCATAAAGATGCCTTAGAA+GGG + chr3_3:39709186-39709205 None:intergenic 30.0%
TATCATAAAGATGCCTTAGA+AGG + chr3_3:39709187-39709206 None:intergenic 30.0%
!!! TGTTCTAGGTAGTAGTTTTT+TGG - chr3_3:39709240-39709259 Msa0451550:intron 30.0%
AGAAAAGGAACGAAAAATAC+TGG + chr3_3:39709423-39709442 None:intergenic 30.0%
TTGTATCTTTATCTCGATTC+AGG - chr3_3:39709453-39709472 Msa0451550:intron 30.0%
TGTATCTTTATCTCGATTCA+GGG - chr3_3:39709454-39709473 Msa0451550:intron 30.0%
! AAATGCAGCTAATTTTTGCT+TGG + chr3_3:39709767-39709786 None:intergenic 30.0%
! ATGAGGCACCATATATTATA+TGG + chr3_3:39710036-39710055 None:intergenic 30.0%
CTTGCTGGTAAAACTAATAT+TGG + chr3_3:39710131-39710150 None:intergenic 30.0%
GAGACATTCAGAATCTAAAT+AGG - chr3_3:39710178-39710197 Msa0451550:intron 30.0%
ATTCAGAATCTAAATAGGTC+AGG - chr3_3:39710183-39710202 Msa0451550:intron 30.0%
AAAGAACTAAAGAATCTCGA+GGG - chr3_3:39710333-39710352 Msa0451550:intron 30.0%
CATTAACATGAAATGTGCAA+AGG - chr3_3:39710743-39710762 Msa0451550:intron 30.0%
AACCCAACTGCAAATATAAA+CGG + chr3_3:39710861-39710880 None:intergenic 30.0%
!! TATATGTTGAAGGTGTTTGA+TGG - chr3_3:39711413-39711432 Msa0451550:intron 30.0%
TAATTCTTCCGGTATGATTA+TGG + chr3_3:39711449-39711468 None:intergenic 30.0%
TTGAATAGAAAACATCGGAA+AGG + chr3_3:39711474-39711493 None:intergenic 30.0%
!!! TATCACATTTTCAAGTGGAT+GGG + chr3_3:39711510-39711529 None:intergenic 30.0%
!! TTTGGTATCACATTTTCAAG+TGG + chr3_3:39711515-39711534 None:intergenic 30.0%
ACCAAATTACGTTAGCAAAT+TGG - chr3_3:39711529-39711548 Msa0451550:intron 30.0%
! ACCACACTTAAAGTCTTTTT+GGG - chr3_3:39711749-39711768 Msa0451550:intron 30.0%
!!! AGCATTATTTTGAGACCTTA+CGG + chr3_3:39711891-39711910 None:intergenic 30.0%
!!! GACGGAGAAATTTTTTTGAA+TGG + chr3_3:39711919-39711938 None:intergenic 30.0%
TTGTTCTATTAGTATGATGG+GGG + chr3_3:39711962-39711981 None:intergenic 30.0%
CTTGTTCTATTAGTATGATG+GGG + chr3_3:39711963-39711982 None:intergenic 30.0%
CACTTGTTCTATTAGTATGA+TGG + chr3_3:39711965-39711984 None:intergenic 30.0%
TGTGACAGTTAAACTTAATC+AGG + chr3_3:39711995-39712014 None:intergenic 30.0%
GGGTCGAAATATATTGATAT+AGG + chr3_3:39712102-39712121 None:intergenic 30.0%
TAGCTCGTAGATAATTGTTA+TGG + chr3_3:39712589-39712608 None:intergenic 30.0%
TAACAATTATCTACGAGCTA+AGG - chr3_3:39712589-39712608 Msa0451550:intron 30.0%
ATATGACCGAAATTTCTTTC+CGG - chr3_3:39712809-39712828 Msa0451550:intron 30.0%
GATTTACCGGAAAGAAATTT+CGG + chr3_3:39712818-39712837 None:intergenic 30.0%
ATATGAATGCTTACACAAGT+TGG + chr3_3:39712890-39712909 None:intergenic 30.0%
TAGTACCATGTTAACTTTGA+TGG - chr3_3:39712963-39712982 Msa0451550:intron 30.0%
TGATGGCAAGTATTAAATCA+AGG - chr3_3:39712980-39712999 Msa0451550:intron 30.0%
GATGGCAAGTATTAAATCAA+GGG - chr3_3:39712981-39713000 Msa0451550:intron 30.0%
ATGGCAAGTATTAAATCAAG+GGG - chr3_3:39712982-39713001 Msa0451550:intron 30.0%
! CTTTTCTTGGAAACTACTTT+AGG - chr3_3:39713042-39713061 Msa0451550:intron 30.0%
GTTAACAACTATATTTGGCT+TGG + chr3_3:39713222-39713241 None:intergenic 30.0%
TCTGCGTTAACAACTATATT+TGG + chr3_3:39713227-39713246 None:intergenic 30.0%
TTAATGGTGTGTAAACCTTA+TGG - chr3_3:39713323-39713342 Msa0451550:CDS 30.0%
! TTTTAGATAGACACTCCATA+AGG + chr3_3:39713341-39713360 None:intergenic 30.0%
!!! GTTATCGGTTTTGTATTTTC+TGG - chr3_3:39713399-39713418 Msa0451550:CDS 30.0%
GATTCTCTAACAGAAGATAA+AGG + chr3_3:39713442-39713461 None:intergenic 30.0%
TCAAGCTAAGTTTAACGAAT+TGG + chr3_3:39713558-39713577 None:intergenic 30.0%
! AATACTTCCTTTGAAAATGC+AGG - chr3_3:39713729-39713748 Msa0451550:intron 30.0%
GTAGATTAATAAACGGTTTC+AGG + chr3_3:39713801-39713820 None:intergenic 30.0%
GGCAAGATTTGAAAGAAACA+AGG + chr3_3:39705567-39705586 None:intergenic 35.0%
CAAAGAAGAAGAAGAAGAAG+GGG + chr3_3:39705679-39705698 None:intergenic 35.0%
AATATGGAGCTACCAAATGA+AGG - chr3_3:39705885-39705904 Msa0451550:intron 35.0%
TCTCAAAAGAAAATGGGAAG+AGG - chr3_3:39705921-39705940 Msa0451550:intron 35.0%
CTCAAAAGAAAATGGGAAGA+GGG - chr3_3:39705922-39705941 Msa0451550:intron 35.0%
GAGGGAAAATTGAAATCAAG+AGG - chr3_3:39705940-39705959 Msa0451550:intron 35.0%
GGATTGAAAACACTACCAAT+AGG - chr3_3:39705961-39705980 Msa0451550:intron 35.0%
TGTATGAATATGCCAACAAC+AGG - chr3_3:39706093-39706112 Msa0451550:intron 35.0%
TGTAAACTCAAACCTGTTGT+TGG + chr3_3:39706108-39706127 None:intergenic 35.0%
AACTGGAGTTTGAGGAAAAT+TGG + chr3_3:39706373-39706392 None:intergenic 35.0%
AATTGACAAACTGGAGTTTG+AGG + chr3_3:39706381-39706400 None:intergenic 35.0%
!! GAATGATGATGGAAATGAAG+AGG + chr3_3:39706760-39706779 None:intergenic 35.0%
TGGACAAGAAAGAATGATGA+TGG + chr3_3:39706771-39706790 None:intergenic 35.0%
AACCTGTTCTCAATACTGTT+AGG - chr3_3:39707065-39707084 Msa0451550:intron 35.0%
! AACCTAACAGTATTGAGAAC+AGG + chr3_3:39707070-39707089 None:intergenic 35.0%
! TACTGTTAGGTTTGTTTGAG+TGG - chr3_3:39707078-39707097 Msa0451550:intron 35.0%
TTACTTATAATAGTGACCGG+AGG - chr3_3:39707235-39707254 Msa0451550:intron 35.0%
TACTTATAATAGTGACCGGA+GGG - chr3_3:39707236-39707255 Msa0451550:intron 35.0%
! CTTATAAACCCATGTTGGTT+AGG + chr3_3:39707529-39707548 None:intergenic 35.0%
TTGTGGAAAACAATGAGTCA+TGG + chr3_3:39707555-39707574 None:intergenic 35.0%
! GTCTTTGTTGTCCTTAGTAT+TGG + chr3_3:39707718-39707737 None:intergenic 35.0%
!!! GATAGTGTTATTTTTCTGCG+GGG - chr3_3:39707779-39707798 Msa0451550:intron 35.0%
AACTTCATATACACAGGTTG+AGG - chr3_3:39708211-39708230 Msa0451550:intron 35.0%
GATGTTGTGTCAGTAAGAAA+TGG + chr3_3:39708350-39708369 None:intergenic 35.0%
TATTACACCATGTTGAATGG+TGG - chr3_3:39708482-39708501 Msa0451550:intron 35.0%
! TTGAGAGCCAATGACAATTT+TGG - chr3_3:39708533-39708552 Msa0451550:intron 35.0%
! TGAGAGCCAATGACAATTTT+GGG - chr3_3:39708534-39708553 Msa0451550:intron 35.0%
CAAAGACCCAAAATTGTCAT+TGG + chr3_3:39708543-39708562 None:intergenic 35.0%
!! CAATGACAATTTTGGGTCTT+TGG - chr3_3:39708541-39708560 Msa0451550:intron 35.0%
ATACAATGAAGACATGTGTG+TGG - chr3_3:39708744-39708763 Msa0451550:intron 35.0%
TACAATGAAGACATGTGTGT+GGG - chr3_3:39708745-39708764 Msa0451550:intron 35.0%
!! CTTTGTTTCTACTCTTCCTA+TGG - chr3_3:39708801-39708820 Msa0451550:intron 35.0%
ACCACTTAATCTGATCTACA+TGG - chr3_3:39708844-39708863 Msa0451550:intron 35.0%
CCACTTAATCTGATCTACAT+GGG - chr3_3:39708845-39708864 Msa0451550:intron 35.0%
CACTTAATCTGATCTACATG+GGG - chr3_3:39708846-39708865 Msa0451550:intron 35.0%
CTATTTAACGAGACAAAGGA+AGG - chr3_3:39708958-39708977 Msa0451550:intron 35.0%
CACCTTCTATAATTGGGTAA+TGG + chr3_3:39708987-39709006 None:intergenic 35.0%
TCCTTGCACCTTCTATAATT+GGG + chr3_3:39708993-39709012 None:intergenic 35.0%
AATGGGGAGATTTGAAAGTA+GGG + chr3_3:39709128-39709147 None:intergenic 35.0%
TAATGGGGAGATTTGAAAGT+AGG + chr3_3:39709129-39709148 None:intergenic 35.0%
ATCCAAAGATGCTTCTAATG+GGG + chr3_3:39709144-39709163 None:intergenic 35.0%
GATCCAAAGATGCTTCTAAT+GGG + chr3_3:39709145-39709164 None:intergenic 35.0%
ATAAGCTTTCAACCCTTCTA+AGG - chr3_3:39709171-39709190 Msa0451550:intron 35.0%
!! TATTGGATTGGTAGTGTTCT+AGG - chr3_3:39709226-39709245 Msa0451550:intron 35.0%
TACAAACACTACGCTAGAAA+AGG + chr3_3:39709438-39709457 None:intergenic 35.0%
GTGTTAGAGCAACTATTGAA+AGG - chr3_3:39709834-39709853 Msa0451550:intron 35.0%
TCAATTTGGATGATTCTTGC+TGG + chr3_3:39710146-39710165 None:intergenic 35.0%
TCGAATCTGTCTTCTCAATT+TGG + chr3_3:39710160-39710179 None:intergenic 35.0%
CAAAGAACTAAAGAATCTCG+AGG - chr3_3:39710332-39710351 Msa0451550:intron 35.0%
AAGCAGAGTTAGATCTAGAA+AGG - chr3_3:39710374-39710393 Msa0451550:intron 35.0%
ATAGAATTAGGTCGAGTCTA+CGG - chr3_3:39710427-39710446 Msa0451550:intron 35.0%
! GTAAGAAATGGATTTGTGCA+TGG - chr3_3:39710537-39710556 Msa0451550:intron 35.0%
TAGCCGTTTATATTTGCAGT+TGG - chr3_3:39710855-39710874 Msa0451550:intron 35.0%
AGCCGTTTATATTTGCAGTT+GGG - chr3_3:39710856-39710875 Msa0451550:intron 35.0%
! TTTTGTTGGTCCTAGCTAAA+TGG - chr3_3:39711203-39711222 Msa0451550:intron 35.0%
TTTGTTGGTCCTAGCTAAAT+GGG - chr3_3:39711204-39711223 Msa0451550:intron 35.0%
TATGTTAGACCCATTTAGCT+AGG + chr3_3:39711216-39711235 None:intergenic 35.0%
ATAGCACCTGTATATGTTGA+AGG - chr3_3:39711403-39711422 Msa0451550:intron 35.0%
CAAACACCTTCAACATATAC+AGG + chr3_3:39711412-39711431 None:intergenic 35.0%
ATTGAGTGCCATAATCATAC+CGG - chr3_3:39711438-39711457 Msa0451550:intron 35.0%
!!! GTATCACATTTTCAAGTGGA+TGG + chr3_3:39711511-39711530 None:intergenic 35.0%
!! GCCAATTTGCTAACGTAATT+TGG + chr3_3:39711533-39711552 None:intergenic 35.0%
GAAAGTTTGAACCTTAGGAT+GGG - chr3_3:39711689-39711708 Msa0451550:intron 35.0%
TTAAGTGTGGTCATAAGAAG+AGG + chr3_3:39711740-39711759 None:intergenic 35.0%
! GACCACACTTAAAGTCTTTT+TGG - chr3_3:39711748-39711767 Msa0451550:intron 35.0%
ACCCAAAAAGACTTTAAGTG+TGG + chr3_3:39711753-39711772 None:intergenic 35.0%
TCCGATTAAATCTCTGTATG+CGG + chr3_3:39711795-39711814 None:intergenic 35.0%
GATTTAGGGAATTGATCAAG+CGG + chr3_3:39711825-39711844 None:intergenic 35.0%
! GAGGATGACAAATGGATTTA+GGG + chr3_3:39711839-39711858 None:intergenic 35.0%
CTAAATCCATTTGTCATCCT+CGG - chr3_3:39711838-39711857 Msa0451550:intron 35.0%
! TTACAAGTTGTAGGCGATTT+TGG + chr3_3:39712459-39712478 None:intergenic 35.0%
TGATCACACATTGTTTGATC+TGG + chr3_3:39712768-39712787 None:intergenic 35.0%
ATATGCTTGTGATGAAGGTA+AGG + chr3_3:39712793-39712812 None:intergenic 35.0%
TTCTTTCCGGTAAATCTTCT+TGG - chr3_3:39712822-39712841 Msa0451550:intron 35.0%
TCTGATCCAAGAAGATTTAC+CGG + chr3_3:39712831-39712850 None:intergenic 35.0%
ACTTGCCATCAAAGTTAACA+TGG + chr3_3:39712971-39712990 None:intergenic 35.0%
TGGCAAGTATTAAATCAAGG+GGG - chr3_3:39712983-39713002 Msa0451550:intron 35.0%
AAAGTCAGGAACTTCTTTGT+AGG + chr3_3:39713076-39713095 None:intergenic 35.0%
!! CAACTATATTTGGCTTGGAA+AGG + chr3_3:39713217-39713236 None:intergenic 35.0%
TTAACGCAGAAGTTGTGTAT+CGG - chr3_3:39713237-39713256 Msa0451550:intron 35.0%
TGTGTATCGGATTAAACTTC+TGG - chr3_3:39713250-39713269 Msa0451550:intron 35.0%
TATCTAAAAAATTGCGCGCT+TGG - chr3_3:39713352-39713371 Msa0451550:CDS 35.0%
ATCTAAAAAATTGCGCGCTT+GGG - chr3_3:39713353-39713372 Msa0451550:CDS 35.0%
!!! CTACCATTTTCTGGTGTTAT+CGG - chr3_3:39713384-39713403 Msa0451550:CDS 35.0%
AAACCGATAACACCAGAAAA+TGG + chr3_3:39713390-39713409 None:intergenic 35.0%
!! GTATTTTCTGGTGTGTGAAT+TGG - chr3_3:39713411-39713430 Msa0451550:CDS 35.0%
TTAACGAATTGGTCCAATGT+AGG + chr3_3:39713547-39713566 None:intergenic 35.0%
! ATCATCACCTGCATTTTCAA+AGG + chr3_3:39713739-39713758 None:intergenic 35.0%
TATATGCTGGAAAAAGGCAA+TGG - chr3_3:39713760-39713779 Msa0451550:intron 35.0%
! GCAAAAAGTGACTTGCCTAT+TGG + chr3_3:39705979-39705998 None:intergenic 40.0%
! ACTTTTTGCAAACGACGCAA+TGG - chr3_3:39705990-39706009 Msa0451550:intron 40.0%
TTAGGGTTTCCTAACCAACA+TGG - chr3_3:39707517-39707536 Msa0451550:intron 40.0%
TAGGGTTTCCTAACCAACAT+GGG - chr3_3:39707518-39707537 Msa0451550:intron 40.0%
GGACACTTATAAACCCATGT+TGG + chr3_3:39707534-39707553 None:intergenic 40.0%
AGTGTTACGTTAGATGCAGA+GGG + chr3_3:39707932-39707951 None:intergenic 40.0%
TAGTGTTACGTTAGATGCAG+AGG + chr3_3:39707933-39707952 None:intergenic 40.0%
! AGAGAAGGGTTCTTTTCTTG+TGG + chr3_3:39707978-39707997 None:intergenic 40.0%
!! AAAGGGTATTGTGGTAATCG+AGG - chr3_3:39708416-39708435 Msa0451550:intron 40.0%
!! TTTTGGGTCTTTGGCAAGTT+AGG - chr3_3:39708550-39708569 Msa0451550:intron 40.0%
CCCATGTAGATCAGATTAAG+TGG + chr3_3:39708848-39708867 None:intergenic 40.0%
! ACCCAATTATAGAAGGTGCA+AGG - chr3_3:39708989-39709008 Msa0451550:intron 40.0%
CTCCTTGCACCTTCTATAAT+TGG + chr3_3:39708994-39709013 None:intergenic 40.0%
GGATCCAAAGATGCTTCTAA+TGG + chr3_3:39709146-39709165 None:intergenic 40.0%
CATTTCTTGTGCGTTGGATT+GGG - chr3_3:39709477-39709496 Msa0451550:CDS 40.0%
ATTTCTTGTGCGTTGGATTG+GGG - chr3_3:39709478-39709497 Msa0451550:CDS 40.0%
AGATACAGATTCTGCGTTAG+TGG + chr3_3:39709882-39709901 None:intergenic 40.0%
! TGTATCTGAAGCTAATACCC+AGG - chr3_3:39709895-39709914 Msa0451550:intron 40.0%
! ATTTTCTGCAGACACATCCT+TGG - chr3_3:39710285-39710304 Msa0451550:intron 40.0%
AAAGAATCTCGAGGGTAGAT+TGG - chr3_3:39710341-39710360 Msa0451550:intron 40.0%
TTGCATGTTAGACAAAGCCA+TGG - chr3_3:39710578-39710597 Msa0451550:intron 40.0%
! TGAGACATTGTTTGCTGATG+TGG - chr3_3:39711063-39711082 Msa0451550:intron 40.0%
ATGTGGAGTTCATGCAAAAG+CGG - chr3_3:39711080-39711099 Msa0451550:intron 40.0%
TCGGAAAGGCTTAATTCTTC+CGG + chr3_3:39711460-39711479 None:intergenic 40.0%
!!! ATTTTCAAGTGGATGGGAAC+CGG + chr3_3:39711504-39711523 None:intergenic 40.0%
!! CCTAGGGATTTTAGAGAAAG+AGG + chr3_3:39711574-39711593 None:intergenic 40.0%
!! CCTCTTTCTCTAAAATCCCT+AGG - chr3_3:39711571-39711590 Msa0451550:intron 40.0%
CATGGGAATCTTTCGAAAAG+GGG + chr3_3:39711636-39711655 None:intergenic 40.0%
CCATGGGAATCTTTCGAAAA+GGG + chr3_3:39711637-39711656 None:intergenic 40.0%
! CCTTTTCGAAAGATTCCCAT+GGG - chr3_3:39711635-39711654 Msa0451550:intron 40.0%
CAAGCGAAAGTTTGAACCTT+AGG - chr3_3:39711684-39711703 Msa0451550:intron 40.0%
CGAAAGTTTGAACCTTAGGA+TGG - chr3_3:39711688-39711707 Msa0451550:intron 40.0%
GCCGCATACAGAGATTTAAT+CGG - chr3_3:39711791-39711810 Msa0451550:intron 40.0%
! CGAGGATGACAAATGGATTT+AGG + chr3_3:39711840-39711859 None:intergenic 40.0%
TAAGTTCCGAGGATGACAAA+TGG + chr3_3:39711847-39711866 None:intergenic 40.0%
CTCGGAACTTAATTGACAAC+CGG - chr3_3:39711856-39711875 Msa0451550:intron 40.0%
GGAGTTCGAACTTTAAGTGA+CGG + chr3_3:39711937-39711956 None:intergenic 40.0%
! TCTATTAGTATGATGGGGGT+TGG + chr3_3:39711958-39711977 None:intergenic 40.0%
TCAGGAACAAATCGCATACA+AGG + chr3_3:39713119-39713138 None:intergenic 40.0%
TTGTTCCTGACTCTGCATAA+TGG - chr3_3:39713129-39713148 Msa0451550:intron 40.0%
TCTAAAAAATTGCGCGCTTG+GGG - chr3_3:39713354-39713373 Msa0451550:CDS 40.0%
AGTTGCTTAGTCAGCAAGTT+TGG - chr3_3:39713467-39713486 Msa0451550:CDS 40.0%
CATCTGATCTTGTTGACGAT+CGG + chr3_3:39713498-39713517 None:intergenic 40.0%
GCAGGTGATGATATATATGC+TGG - chr3_3:39713747-39713766 Msa0451550:intron 40.0%
GAAGAAGAAGAAGAAGGGGT+TGG + chr3_3:39705675-39705694 None:intergenic 45.0%
ATGGAGCTACCAAATGAAGG+TGG - chr3_3:39705888-39705907 Msa0451550:intron 45.0%
CTACCAAATGAAGGTGGAGA+AGG - chr3_3:39705894-39705913 Msa0451550:intron 45.0%
GATCCTTCTCCACCTTCATT+TGG + chr3_3:39705900-39705919 None:intergenic 45.0%
ATATTCATACAAGCGACCGC+GGG + chr3_3:39706084-39706103 None:intergenic 45.0%
CATATTCATACAAGCGACCG+CGG + chr3_3:39706085-39706104 None:intergenic 45.0%
!! GAGTGCATGACAGCTTTTTC+TGG + chr3_3:39706731-39706750 None:intergenic 45.0%
TGTCAGTCCACCATTCAACA+TGG + chr3_3:39708492-39708511 None:intergenic 45.0%
GTGTGGGTAAATCCACCAAT+TGG - chr3_3:39708761-39708780 Msa0451550:intron 45.0%
!! CTCCCCATTAGAAGCATCTT+TGG - chr3_3:39709139-39709158 Msa0451550:intron 45.0%
GCATTTCTTGTGCGTTGGAT+TGG - chr3_3:39709476-39709495 Msa0451550:CDS 45.0%
GTGTTAGTGTGTCAACCTTG+TGG + chr3_3:39710101-39710120 None:intergenic 45.0%
CAGCAAACAATGTCTCATGC+TGG + chr3_3:39711060-39711079 None:intergenic 45.0%
TGTGGAGTTCATGCAAAAGC+GGG - chr3_3:39711081-39711100 Msa0451550:intron 45.0%
AAAGGGGAATCCATCTTGGT+GGG + chr3_3:39711620-39711639 None:intergenic 45.0%
AAAAGGGGAATCCATCTTGG+TGG + chr3_3:39711621-39711640 None:intergenic 45.0%
TCGAAAAGGGGAATCCATCT+TGG + chr3_3:39711624-39711643 None:intergenic 45.0%
! CCCTTTTCGAAAGATTCCCA+TGG - chr3_3:39711634-39711653 Msa0451550:intron 45.0%
CCCATGGGAATCTTTCGAAA+AGG + chr3_3:39711638-39711657 None:intergenic 45.0%
TTCGAAGAATACCAGCCCAT+GGG + chr3_3:39711653-39711672 None:intergenic 45.0%
AACAAACTTGGCCCATCCTA+AGG + chr3_3:39711703-39711722 None:intergenic 45.0%
CGGTTGTCAATTAAGTTCCG+AGG + chr3_3:39711858-39711877 None:intergenic 45.0%
AACCGGCAATTAGATCCGTA+AGG - chr3_3:39711873-39711892 Msa0451550:intron 45.0%
GACCTTACGGATCTAATTGC+CGG + chr3_3:39711878-39711897 None:intergenic 45.0%
CGGTCATATGCTTGTGATGA+AGG + chr3_3:39712798-39712817 None:intergenic 45.0%
! ACACAAGTTGGAGAGCAGTT+TGG + chr3_3:39712878-39712897 None:intergenic 45.0%
TTCCTGACTCTGCATAATGG+TGG - chr3_3:39713132-39713151 Msa0451550:intron 45.0%
TGATCTTGTTGACGATCGGA+TGG + chr3_3:39713494-39713513 None:intergenic 45.0%
CGATCGTCAACAAGATCAGA+TGG - chr3_3:39713496-39713515 Msa0451550:intron 45.0%
!!! AAATTTTTTATGATAAAAAA+AGG - chr3_3:39708267-39708286 Msa0451550:intron 5.0%
!!! AATTTTTTATGATAAAAAAA+GGG - chr3_3:39708268-39708287 Msa0451550:intron 5.0%
!! ACAAATAAATTATAATTAAT+TGG + chr3_3:39710832-39710851 None:intergenic 5.0%
!!! CTTATTTTTATATTTTTTTT+TGG + chr3_3:39710963-39710982 None:intergenic 5.0%
! GCGGGTTGAGAAGACAACAA+GGG + chr3_3:39706066-39706085 None:intergenic 50.0%
! CTTGTTGTCTTCTCAACCCG+CGG - chr3_3:39706065-39706084 Msa0451550:intron 50.0%
! TCAGGGCATTTCTTGTGCGT+TGG - chr3_3:39709471-39709490 Msa0451550:CDS 50.0%
CACATCCTTGGTGAAGCTCT+CGG - chr3_3:39710297-39710316 Msa0451550:intron 50.0%
ACATCCTTGGTGAAGCTCTC+GGG - chr3_3:39710298-39710317 Msa0451550:intron 50.0%
CTCGAGGGTAGATTGGAGAA+AGG - chr3_3:39710348-39710367 Msa0451550:intron 50.0%
TTCGAAAGATTCCCATGGGC+TGG - chr3_3:39711639-39711658 Msa0451550:intron 50.0%
CTTCGAAGAATACCAGCCCA+TGG + chr3_3:39711654-39711673 None:intergenic 50.0%
CACCACCATTATGCAGAGTC+AGG + chr3_3:39713137-39713156 None:intergenic 50.0%
AAAAAATTGCGCGCTTGGGG+AGG - chr3_3:39713357-39713376 Msa0451550:CDS 50.0%
AAAAATTGCGCGCTTGGGGA+GGG - chr3_3:39713358-39713377 Msa0451550:CDS 50.0%
GACTGCACGAACTCCTACAT+TGG - chr3_3:39713531-39713550 Msa0451550:intron 50.0%
! CGCGGGTTGAGAAGACAACA+AGG + chr3_3:39706067-39706086 None:intergenic 55.0%
GGGAATCCATCTTGGTGGGA+CGG + chr3_3:39711616-39711635 None:intergenic 55.0%
AAAATTGCGCGCTTGGGGAG+GGG - chr3_3:39713359-39713378 Msa0451550:CDS 55.0%
!!! GGAGGGGTGCTACCATTTTC+TGG - chr3_3:39713375-39713394 Msa0451550:CDS 55.0%
GAGACCCGAGAGCTTCACCA+AGG + chr3_3:39710305-39710324 None:intergenic 60.0%
AGGTCGAGTCTACGGTGCAC+AGG - chr3_3:39710435-39710454 Msa0451550:intron 60.0%
TGGATCGTGTGCGGTGCCTA+GGG + chr3_3:39711590-39711609 None:intergenic 60.0%
GTGGATCGTGTGCGGTGCCT+AGG + chr3_3:39711591-39711610 None:intergenic 65.0%
GGACGGTCGTGGATCGTGTG+CGG + chr3_3:39711599-39711618 None:intergenic 65.0%
CCATCTTGGTGGGACGGTCG+TGG + chr3_3:39711610-39711629 None:intergenic 65.0%
CCACGACCGTCCCACCAAGA+TGG - chr3_3:39711607-39711626 Msa0451550:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 39705484 39713893 39705484 ID=Msa0451550;Name=Msa0451550
chr3_3 mRNA 39705484 39713893 39705484 ID=Msa0451550-mRNA-1;Parent=Msa0451550;Name=Msa0451550-mRNA-1;_AED=0.15;_eAED=0.15;_QI=61|0.83|1|1|0.66|0.42|7|139|190
chr3_3 exon 39705484 39705626 39705484 ID=Msa0451550-mRNA-1:exon:7189;Parent=Msa0451550-mRNA-1
chr3_3 exon 39706482 39706657 39706482 ID=Msa0451550-mRNA-1:exon:7188;Parent=Msa0451550-mRNA-1
chr3_3 exon 39706767 39706808 39706767 ID=Msa0451550-mRNA-1:exon:7187;Parent=Msa0451550-mRNA-1
chr3_3 exon 39708275 39708316 39708275 ID=Msa0451550-mRNA-1:exon:7186;Parent=Msa0451550-mRNA-1
chr3_3 exon 39709461 39709542 39709461 ID=Msa0451550-mRNA-1:exon:7185;Parent=Msa0451550-mRNA-1
chr3_3 exon 39713263 39713500 39713263 ID=Msa0451550-mRNA-1:exon:7184;Parent=Msa0451550-mRNA-1
chr3_3 exon 39713844 39713893 39713844 ID=Msa0451550-mRNA-1:exon:7183;Parent=Msa0451550-mRNA-1
chr3_3 five_prime_UTR 39713844 39713893 39713844 ID=Msa0451550-mRNA-1:five_prime_utr;Parent=Msa0451550-mRNA-1
chr3_3 five_prime_UTR 39713490 39713500 39713490 ID=Msa0451550-mRNA-1:five_prime_utr;Parent=Msa0451550-mRNA-1
chr3_3 CDS 39713263 39713489 39713263 ID=Msa0451550-mRNA-1:cds;Parent=Msa0451550-mRNA-1
chr3_3 CDS 39709461 39709542 39709461 ID=Msa0451550-mRNA-1:cds;Parent=Msa0451550-mRNA-1
chr3_3 CDS 39708275 39708316 39708275 ID=Msa0451550-mRNA-1:cds;Parent=Msa0451550-mRNA-1
chr3_3 CDS 39706767 39706808 39706767 ID=Msa0451550-mRNA-1:cds;Parent=Msa0451550-mRNA-1
chr3_3 CDS 39706482 39706657 39706482 ID=Msa0451550-mRNA-1:cds;Parent=Msa0451550-mRNA-1
chr3_3 CDS 39705623 39705626 39705623 ID=Msa0451550-mRNA-1:cds;Parent=Msa0451550-mRNA-1
chr3_3 three_prime_UTR 39705484 39705622 39705484 ID=Msa0451550-mRNA-1:three_prime_utr;Parent=Msa0451550-mRNA-1
Gene Sequence

>Msa0451550

ATGGAGCTACCAAATGAAGGTGGAGAAGGATCTTCTCAAAAGAAAATGGGAAGAGGGAAAATTGAAATCAAGAGGATTGAAAACACTACCAATAGGCAAGTCACTTTTTGCAAACGACGCAATGGATTGTTGAAGAAAGCTTATGAATTATCTGTTCTTTGTGATGCTGAAGTTGCCCTTGTTGTCTTCTCAACCCGCGGTCGCTTGTATGAATATGCCAACAACAGTGTTAGAGCAACTATTGAAAGGTACAAAAAAGCTTGTGCTGCTTCCACTAACGCAGAATCTGTATCTGAAGCTAATACCCAGCATGAGACATTGTTTGCTGATGTGGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAACCATAACAATTATCTACGAGCTAAGATAGCTGAACATGAGAGAGCTCAACAACAGCAACAAAATTTGATTCCAGATCAAACAATGTGTGATCAGTCCTTACCTTCATCACAAGCATATGACCGAAATTTCTTTCCGGTAAATCTTCTTGGATCAGATCAGCAGCAGTATTCGCGTCAAGACCAAACTGCTCTCCAACTTGTGTGA
Protein sequence

>Msa0451550

MELPNEGGEGSSQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRATIERYKKACAASTNAESVSEANTQHETLFADVEFMQKREIELQNHNNYLRAKIAEHERAQQQQQNLIPDQTMCDQSLPSSQAYDRNFFPVNLLGSDQQQYSRQDQTALQLV*