Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0452040 | RHN70244.1 | 94.378 | 249 | 14 | 0 | 9 | 257 | 1075 | 1323 | 6.87e-164 | 499 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0452040 | sp|Q9C5X9|HAC1_ARATH | 42.510 | 247 | 122 | 3 | 9 | 252 | 1437 | 1666 | 5.51e-62 | 214 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0452040 | A0A396J0M7 | 94.378 | 249 | 14 | 0 | 9 | 257 | 1075 | 1323 | 3.28e-164 | 499 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0452040 | TR | TAZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0452040 | MtrunA17_Chr3g0133461 | 94.378 | 249 | 14 | 0 | 9 | 257 | 1075 | 1323 | 6.31e-168 | 499 |
| Msa0452040 | MtrunA17_Chr3g0138411 | 79.920 | 249 | 42 | 2 | 9 | 257 | 946 | 1186 | 5.65e-136 | 412 |
| Msa0452040 | MtrunA17_Chr5g0438991 | 63.855 | 249 | 37 | 2 | 9 | 257 | 759 | 954 | 1.93e-97 | 305 |
| Msa0452040 | MtrunA17_Chr6g0456861 | 60.558 | 251 | 44 | 2 | 9 | 257 | 562 | 759 | 3.06e-92 | 288 |
| Msa0452040 | MtrunA17_Chr4g0000031 | 42.742 | 248 | 121 | 4 | 8 | 252 | 1449 | 1678 | 1.18e-63 | 215 |
| Msa0452040 | MtrunA17_Chr5g0401991 | 57.895 | 190 | 25 | 3 | 9 | 196 | 85 | 221 | 7.92e-60 | 189 |
| Msa0452040 | MtrunA17_Chr6g0456911 | 85.455 | 55 | 8 | 0 | 30 | 84 | 6 | 60 | 1.24e-26 | 99.0 |
| Msa0452040 | MtrunA17_Chr0c02g0489811 | 84.211 | 57 | 9 | 0 | 28 | 84 | 5 | 61 | 3.26e-26 | 97.8 |
| Msa0452040 | MtrunA17_Chr6g0456851 | 64.000 | 75 | 27 | 0 | 18 | 92 | 807 | 881 | 2.65e-25 | 104 |
| Msa0452040 | MtrunA17_Chr7g0229221 | 80.702 | 57 | 11 | 0 | 28 | 84 | 5 | 61 | 8.18e-25 | 94.4 |
| Msa0452040 | MtrunA17_Chr0c02g0489731 | 78.947 | 57 | 12 | 0 | 28 | 84 | 5 | 61 | 1.37e-23 | 91.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0452040 | AT1G79000.1 | 42.510 | 247 | 122 | 3 | 9 | 252 | 1437 | 1666 | 5.60e-63 | 214 |
| Msa0452040 | AT1G79000.3 | 42.510 | 247 | 122 | 3 | 9 | 252 | 1413 | 1642 | 6.59e-63 | 214 |
| Msa0452040 | AT1G79000.2 | 42.510 | 247 | 122 | 3 | 9 | 252 | 1437 | 1666 | 6.95e-63 | 214 |
| Msa0452040 | AT1G16710.3 | 43.333 | 240 | 116 | 3 | 16 | 252 | 1427 | 1649 | 9.69e-63 | 213 |
| Msa0452040 | AT1G16710.10 | 43.333 | 240 | 116 | 3 | 16 | 252 | 1427 | 1649 | 9.69e-63 | 213 |
| Msa0452040 | AT1G16710.8 | 43.333 | 240 | 116 | 3 | 16 | 252 | 1427 | 1649 | 9.69e-63 | 213 |
| Msa0452040 | AT1G16710.7 | 43.333 | 240 | 116 | 3 | 16 | 252 | 1427 | 1649 | 9.69e-63 | 213 |
| Msa0452040 | AT1G16710.2 | 43.333 | 240 | 116 | 3 | 16 | 252 | 1424 | 1646 | 9.78e-63 | 213 |
| Msa0452040 | AT1G16710.1 | 43.333 | 240 | 116 | 3 | 16 | 252 | 1453 | 1675 | 1.08e-62 | 213 |
| Msa0452040 | AT1G16710.6 | 43.333 | 240 | 116 | 3 | 16 | 252 | 1388 | 1610 | 1.22e-62 | 213 |
| Msa0452040 | AT1G16710.4 | 43.333 | 240 | 116 | 3 | 16 | 252 | 1388 | 1610 | 1.22e-62 | 213 |
| Msa0452040 | AT1G16710.5 | 43.333 | 240 | 116 | 3 | 16 | 252 | 1388 | 1610 | 1.22e-62 | 213 |
| Msa0452040 | AT3G12980.1 | 39.113 | 248 | 123 | 6 | 14 | 258 | 1422 | 1644 | 7.42e-52 | 182 |
| Msa0452040 | AT3G12980.2 | 39.113 | 248 | 123 | 6 | 14 | 258 | 1341 | 1563 | 7.66e-52 | 182 |
| Msa0452040 | AT1G55970.2 | 36.250 | 240 | 129 | 5 | 14 | 249 | 1204 | 1423 | 3.93e-41 | 151 |
| Msa0452040 | AT1G55970.1 | 36.250 | 240 | 129 | 5 | 14 | 249 | 1218 | 1437 | 4.68e-41 | 150 |
| Msa0452040 | AT1G67220.1 | 32.917 | 240 | 131 | 6 | 20 | 250 | 1143 | 1361 | 2.97e-31 | 122 |
Find 44 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGTAGATTATTTGAAAAT+AGG | 0.198691 | 3_3:-40653417 | Msa0452040:CDS |
| TCTCACATTTCCAGCTCTTT+TGG | 0.200246 | 3_3:+40653239 | None:intergenic |
| CACTCGAATTTCGCACTTAC+TGG | 0.203923 | 3_3:+40652847 | None:intergenic |
| TGATTCCCAGATTGATATAT+TGG | 0.290090 | 3_3:+40653085 | None:intergenic |
| GAGTAGATTATTTGAAAATA+GGG | 0.292484 | 3_3:-40653416 | Msa0452040:CDS |
| TTTGAGTCAACTTGTGTTCA+TGG | 0.292920 | 3_3:+40653161 | None:intergenic |
| CATTTGCTCTGCATGCTATA+AGG | 0.316886 | 3_3:-40653200 | Msa0452040:CDS |
| GTGCGAAATTCGAGTGAATC+GGG | 0.363640 | 3_3:-40652840 | Msa0452040:CDS |
| TCAAGACCAATATATCAATC+TGG | 0.374921 | 3_3:-40653091 | Msa0452040:CDS |
| TCAGAGTAGGATTGTGTAGA+TGG | 0.383953 | 3_3:+40653308 | None:intergenic |
| ATCATTATGTTTAGTGTTGA+AGG | 0.388339 | 3_3:+40653450 | None:intergenic |
| TGCAACTCGCCATTCTTTGA+TGG | 0.413348 | 3_3:+40653591 | None:intergenic |
| CGAGTTGCATACACTTTGTC+AGG | 0.417455 | 3_3:-40653577 | Msa0452040:intron |
| ATCATGAGTCAAATGAGAAA+AGG | 0.418772 | 3_3:-40653066 | Msa0452040:CDS |
| CAATGTCGTGCAGCCAATGC+TGG | 0.445595 | 3_3:-40652920 | Msa0452040:CDS |
| GACCATCATCGAGGAATACT+TGG | 0.446298 | 3_3:+40653336 | None:intergenic |
| CTTATAGCATGCAGAGCAAA+TGG | 0.457684 | 3_3:+40653201 | None:intergenic |
| CAAACTGAAACTGAGACTTC+TGG | 0.468204 | 3_3:+40653374 | None:intergenic |
| AGTGTAGCATTCCGCGGTGC+AGG | 0.469290 | 3_3:-40652751 | Msa0452040:intron |
| TTCTTGATTTGAGAACAGTT+TGG | 0.474837 | 3_3:+40652884 | None:intergenic |
| ATGGGTGTGCATCAGAACTA+TGG | 0.476458 | 3_3:+40653610 | None:intergenic |
| TTATACTTGCTGCTCACTCT+AGG | 0.483492 | 3_3:-40652790 | Msa0452040:CDS |
| AGTGCGAAATTCGAGTGAAT+CGG | 0.497044 | 3_3:-40652841 | Msa0452040:CDS |
| TCATGAGTCAAATGAGAAAA+GGG | 0.502725 | 3_3:-40653065 | Msa0452040:intron |
| CAAGACCAATATATCAATCT+GGG | 0.503999 | 3_3:-40653090 | Msa0452040:CDS |
| GCAACTCGCCATTCTTTGAT+GGG | 0.505596 | 3_3:+40653592 | None:intergenic |
| TAGGATTGTGTAGATGGTAG+AGG | 0.509799 | 3_3:+40653314 | None:intergenic |
| TCATTATGTTTAGTGTTGAA+GGG | 0.513611 | 3_3:+40653451 | None:intergenic |
| CTCTAGGAATTGCAAAGACT+CGG | 0.517971 | 3_3:-40652774 | Msa0452040:CDS |
| TTTCAAATAATCTACTCTCA+AGG | 0.542071 | 3_3:+40653422 | None:intergenic |
| TGCCAAGTATTCCTCGATGA+TGG | 0.542961 | 3_3:-40653338 | Msa0452040:CDS |
| ACAATGTATTCCAAAAGAGC+TGG | 0.547262 | 3_3:-40653249 | Msa0452040:CDS |
| CATTATGTTTAGTGTTGAAG+GGG | 0.549171 | 3_3:+40653452 | None:intergenic |
| TCTGCATGCTATAAGGATAG+AGG | 0.554961 | 3_3:-40653193 | Msa0452040:CDS |
| GCAGAGCAAATGGTGCACTC+TGG | 0.556191 | 3_3:+40653211 | None:intergenic |
| GATGCACACCCATCAAAGAA+TGG | 0.560620 | 3_3:-40653600 | Msa0452040:CDS |
| TTTACAACAGACATCAGAGT+AGG | 0.573922 | 3_3:+40653295 | None:intergenic |
| ATGAGAGCAAGATCCAGCAT+TGG | 0.620840 | 3_3:+40652907 | None:intergenic |
| TGCGAAATTCGAGTGAATCG+GGG | 0.624993 | 3_3:-40652839 | Msa0452040:CDS |
| TCGAGGAATACTTGGCACGA+CGG | 0.681417 | 3_3:+40653344 | None:intergenic |
| ACTCGGAGTGTAGCATTCCG+CGG | 0.696125 | 3_3:-40652757 | Msa0452040:CDS |
| GAAGGGGATATCATCAACAA+CGG | 0.696829 | 3_3:+40653468 | None:intergenic |
| ATGGTAGAGGACCATCATCG+AGG | 0.748774 | 3_3:+40653327 | None:intergenic |
| ATAACAACACACCTGCACCG+CGG | 0.759255 | 3_3:+40652740 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAGTAGATTATTTGAAAAT+AGG | - | chr3_3:40652759-40652778 | Msa0452040:CDS | 20.0% |
| !! | GAGTAGATTATTTGAAAATA+GGG | - | chr3_3:40652760-40652779 | Msa0452040:CDS | 20.0% |
| !! | TTTAACCATAAAAAATGACT+TGG | + | chr3_3:40653535-40653554 | None:intergenic | 20.0% |
| !!! | TATATTTATGTTGATTTTGC+AGG | - | chr3_3:40653579-40653598 | Msa0452040:CDS | 20.0% |
| !!! | ATATTTATGTTGATTTTGCA+GGG | - | chr3_3:40653580-40653599 | Msa0452040:CDS | 20.0% |
| !! | AGAGTAGATTATTTGAAAAT+AGG | - | chr3_3:40652759-40652778 | Msa0452040:CDS | 20.0% |
| !! | GAGTAGATTATTTGAAAATA+GGG | - | chr3_3:40652760-40652779 | Msa0452040:CDS | 20.0% |
| !! | TTTAACCATAAAAAATGACT+TGG | + | chr3_3:40653535-40653554 | None:intergenic | 20.0% |
| !!! | TATATTTATGTTGATTTTGC+AGG | - | chr3_3:40653579-40653598 | Msa0452040:CDS | 20.0% |
| !!! | ATATTTATGTTGATTTTGCA+GGG | - | chr3_3:40653580-40653599 | Msa0452040:CDS | 20.0% |
| ! | ATATGAAAAACATCAGGTTT+AGG | + | chr3_3:40652631-40652650 | None:intergenic | 25.0% |
| ! | AGAATCATATGAAAAACATC+AGG | + | chr3_3:40652637-40652656 | None:intergenic | 25.0% |
| !! | TTAAATTGTCTTCCATTTTC+AGG | - | chr3_3:40652685-40652704 | Msa0452040:intron | 25.0% |
| !! | TCATTATGTTTAGTGTTGAA+GGG | + | chr3_3:40652728-40652747 | None:intergenic | 25.0% |
| !! | ATCATTATGTTTAGTGTTGA+AGG | + | chr3_3:40652729-40652748 | None:intergenic | 25.0% |
| ! | TTTCAAATAATCTACTCTCA+AGG | + | chr3_3:40652757-40652776 | None:intergenic | 25.0% |
| ! | GTATTGAAAACAACAAATCT+AGG | + | chr3_3:40653150-40653169 | None:intergenic | 25.0% |
| !!! | TTACTTTCTGACTTGTTTTT+TGG | - | chr3_3:40653504-40653523 | Msa0452040:intron | 25.0% |
| !!! | TACTTTCTGACTTGTTTTTT+GGG | - | chr3_3:40653505-40653524 | Msa0452040:intron | 25.0% |
| ! | ATATGAAAAACATCAGGTTT+AGG | + | chr3_3:40652631-40652650 | None:intergenic | 25.0% |
| ! | AGAATCATATGAAAAACATC+AGG | + | chr3_3:40652637-40652656 | None:intergenic | 25.0% |
| !! | TTAAATTGTCTTCCATTTTC+AGG | - | chr3_3:40652685-40652704 | Msa0452040:intron | 25.0% |
| !! | TCATTATGTTTAGTGTTGAA+GGG | + | chr3_3:40652728-40652747 | None:intergenic | 25.0% |
| !! | ATCATTATGTTTAGTGTTGA+AGG | + | chr3_3:40652729-40652748 | None:intergenic | 25.0% |
| ! | TTTCAAATAATCTACTCTCA+AGG | + | chr3_3:40652757-40652776 | None:intergenic | 25.0% |
| ! | GTATTGAAAACAACAAATCT+AGG | + | chr3_3:40653150-40653169 | None:intergenic | 25.0% |
| !!! | TTACTTTCTGACTTGTTTTT+TGG | - | chr3_3:40653504-40653523 | Msa0452040:intron | 25.0% |
| !!! | TACTTTCTGACTTGTTTTTT+GGG | - | chr3_3:40653505-40653524 | Msa0452040:intron | 25.0% |
| ! | CATTATGTTTAGTGTTGAAG+GGG | + | chr3_3:40652727-40652746 | None:intergenic | 30.0% |
| TCAAGACCAATATATCAATC+TGG | - | chr3_3:40653085-40653104 | Msa0452040:CDS | 30.0% | |
| CAAGACCAATATATCAATCT+GGG | - | chr3_3:40653086-40653105 | Msa0452040:CDS | 30.0% | |
| TGATTCCCAGATTGATATAT+TGG | + | chr3_3:40653094-40653113 | None:intergenic | 30.0% | |
| ATCATGAGTCAAATGAGAAA+AGG | - | chr3_3:40653110-40653129 | Msa0452040:CDS | 30.0% | |
| TCATGAGTCAAATGAGAAAA+GGG | - | chr3_3:40653111-40653130 | Msa0452040:CDS | 30.0% | |
| ! | TTCTTGATTTGAGAACAGTT+TGG | + | chr3_3:40653295-40653314 | None:intergenic | 30.0% |
| CAAAATCTCTCAAATTCTCT+AGG | + | chr3_3:40653477-40653496 | None:intergenic | 30.0% | |
| ! | CTAGAGAATTTGAGAGATTT+TGG | - | chr3_3:40653475-40653494 | Msa0452040:intron | 30.0% |
| !!! | GACAACCAAGTCATTTTTTA+TGG | - | chr3_3:40653527-40653546 | Msa0452040:intron | 30.0% |
| ! | CATTATGTTTAGTGTTGAAG+GGG | + | chr3_3:40652727-40652746 | None:intergenic | 30.0% |
| TCAAGACCAATATATCAATC+TGG | - | chr3_3:40653085-40653104 | Msa0452040:CDS | 30.0% | |
| CAAGACCAATATATCAATCT+GGG | - | chr3_3:40653086-40653105 | Msa0452040:CDS | 30.0% | |
| TGATTCCCAGATTGATATAT+TGG | + | chr3_3:40653094-40653113 | None:intergenic | 30.0% | |
| ATCATGAGTCAAATGAGAAA+AGG | - | chr3_3:40653110-40653129 | Msa0452040:CDS | 30.0% | |
| TCATGAGTCAAATGAGAAAA+GGG | - | chr3_3:40653111-40653130 | Msa0452040:CDS | 30.0% | |
| ! | TTCTTGATTTGAGAACAGTT+TGG | + | chr3_3:40653295-40653314 | None:intergenic | 30.0% |
| CAAAATCTCTCAAATTCTCT+AGG | + | chr3_3:40653477-40653496 | None:intergenic | 30.0% | |
| ! | CTAGAGAATTTGAGAGATTT+TGG | - | chr3_3:40653475-40653494 | Msa0452040:intron | 30.0% |
| !!! | GACAACCAAGTCATTTTTTA+TGG | - | chr3_3:40653527-40653546 | Msa0452040:intron | 30.0% |
| TTTACAACAGACATCAGAGT+AGG | + | chr3_3:40652884-40652903 | None:intergenic | 35.0% | |
| ACAATGTATTCCAAAAGAGC+TGG | - | chr3_3:40652927-40652946 | Msa0452040:CDS | 35.0% | |
| TTTGAGTCAACTTGTGTTCA+TGG | + | chr3_3:40653018-40653037 | None:intergenic | 35.0% | |
| ! | ACCATATCTTTTTACACTGC+TGG | + | chr3_3:40653366-40653385 | None:intergenic | 35.0% |
| TTTACAACAGACATCAGAGT+AGG | + | chr3_3:40652884-40652903 | None:intergenic | 35.0% | |
| ACAATGTATTCCAAAAGAGC+TGG | - | chr3_3:40652927-40652946 | Msa0452040:CDS | 35.0% | |
| TTTGAGTCAACTTGTGTTCA+TGG | + | chr3_3:40653018-40653037 | None:intergenic | 35.0% | |
| ! | ACCATATCTTTTTACACTGC+TGG | + | chr3_3:40653366-40653385 | None:intergenic | 35.0% |
| GAAGGGGATATCATCAACAA+CGG | + | chr3_3:40652711-40652730 | None:intergenic | 40.0% | |
| CAAACTGAAACTGAGACTTC+TGG | + | chr3_3:40652805-40652824 | None:intergenic | 40.0% | |
| TAGGATTGTGTAGATGGTAG+AGG | + | chr3_3:40652865-40652884 | None:intergenic | 40.0% | |
| TCAGAGTAGGATTGTGTAGA+TGG | + | chr3_3:40652871-40652890 | None:intergenic | 40.0% | |
| ! | TCTCACATTTCCAGCTCTTT+TGG | + | chr3_3:40652940-40652959 | None:intergenic | 40.0% |
| CTTATAGCATGCAGAGCAAA+TGG | + | chr3_3:40652978-40652997 | None:intergenic | 40.0% | |
| CATTTGCTCTGCATGCTATA+AGG | - | chr3_3:40652976-40652995 | Msa0452040:intron | 40.0% | |
| TCTGCATGCTATAAGGATAG+AGG | - | chr3_3:40652983-40653002 | Msa0452040:intron | 40.0% | |
| TTCACCATCTGTGTGTAAGT+CGG | + | chr3_3:40653208-40653227 | None:intergenic | 40.0% | |
| AGTGCGAAATTCGAGTGAAT+CGG | - | chr3_3:40653335-40653354 | Msa0452040:CDS | 40.0% | |
| GCCAGCAGTGTAAAAAGATA+TGG | - | chr3_3:40653362-40653381 | Msa0452040:CDS | 40.0% | |
| ! | TTATACTTGCTGCTCACTCT+AGG | - | chr3_3:40653386-40653405 | Msa0452040:CDS | 40.0% |
| ! | CTCTAGGAATTGCAAAGACT+CGG | - | chr3_3:40653402-40653421 | Msa0452040:CDS | 40.0% |
| GAAGGGGATATCATCAACAA+CGG | + | chr3_3:40652711-40652730 | None:intergenic | 40.0% | |
| CAAACTGAAACTGAGACTTC+TGG | + | chr3_3:40652805-40652824 | None:intergenic | 40.0% | |
| TAGGATTGTGTAGATGGTAG+AGG | + | chr3_3:40652865-40652884 | None:intergenic | 40.0% | |
| TCAGAGTAGGATTGTGTAGA+TGG | + | chr3_3:40652871-40652890 | None:intergenic | 40.0% | |
| ! | TCTCACATTTCCAGCTCTTT+TGG | + | chr3_3:40652940-40652959 | None:intergenic | 40.0% |
| CTTATAGCATGCAGAGCAAA+TGG | + | chr3_3:40652978-40652997 | None:intergenic | 40.0% | |
| CATTTGCTCTGCATGCTATA+AGG | - | chr3_3:40652976-40652995 | Msa0452040:intron | 40.0% | |
| TCTGCATGCTATAAGGATAG+AGG | - | chr3_3:40652983-40653002 | Msa0452040:intron | 40.0% | |
| TTCACCATCTGTGTGTAAGT+CGG | + | chr3_3:40653208-40653227 | None:intergenic | 40.0% | |
| AGTGCGAAATTCGAGTGAAT+CGG | - | chr3_3:40653335-40653354 | Msa0452040:CDS | 40.0% | |
| GCCAGCAGTGTAAAAAGATA+TGG | - | chr3_3:40653362-40653381 | Msa0452040:CDS | 40.0% | |
| ! | TTATACTTGCTGCTCACTCT+AGG | - | chr3_3:40653386-40653405 | Msa0452040:CDS | 40.0% |
| ! | CTCTAGGAATTGCAAAGACT+CGG | - | chr3_3:40653402-40653421 | Msa0452040:CDS | 40.0% |
| ATGGGTGTGCATCAGAACTA+TGG | + | chr3_3:40652569-40652588 | None:intergenic | 45.0% | |
| GATGCACACCCATCAAAGAA+TGG | - | chr3_3:40652576-40652595 | Msa0452040:CDS | 45.0% | |
| GCAACTCGCCATTCTTTGAT+GGG | + | chr3_3:40652587-40652606 | None:intergenic | 45.0% | |
| TGCAACTCGCCATTCTTTGA+TGG | + | chr3_3:40652588-40652607 | None:intergenic | 45.0% | |
| CGAGTTGCATACACTTTGTC+AGG | - | chr3_3:40652599-40652618 | Msa0452040:intron | 45.0% | |
| CATCAACAACGGCCTGAAAA+TGG | + | chr3_3:40652700-40652719 | None:intergenic | 45.0% | |
| TGCCAAGTATTCCTCGATGA+TGG | - | chr3_3:40652838-40652857 | Msa0452040:CDS | 45.0% | |
| GACCATCATCGAGGAATACT+TGG | + | chr3_3:40652843-40652862 | None:intergenic | 45.0% | |
| ATGAGAGCAAGATCCAGCAT+TGG | + | chr3_3:40653272-40653291 | None:intergenic | 45.0% | |
| CACTCGAATTTCGCACTTAC+TGG | + | chr3_3:40653332-40653351 | None:intergenic | 45.0% | |
| GTGCGAAATTCGAGTGAATC+GGG | - | chr3_3:40653336-40653355 | Msa0452040:CDS | 45.0% | |
| TGCGAAATTCGAGTGAATCG+GGG | - | chr3_3:40653337-40653356 | Msa0452040:CDS | 45.0% | |
| ATGGGTGTGCATCAGAACTA+TGG | + | chr3_3:40652569-40652588 | None:intergenic | 45.0% | |
| GATGCACACCCATCAAAGAA+TGG | - | chr3_3:40652576-40652595 | Msa0452040:CDS | 45.0% | |
| GCAACTCGCCATTCTTTGAT+GGG | + | chr3_3:40652587-40652606 | None:intergenic | 45.0% | |
| TGCAACTCGCCATTCTTTGA+TGG | + | chr3_3:40652588-40652607 | None:intergenic | 45.0% | |
| CGAGTTGCATACACTTTGTC+AGG | - | chr3_3:40652599-40652618 | Msa0452040:intron | 45.0% | |
| CATCAACAACGGCCTGAAAA+TGG | + | chr3_3:40652700-40652719 | None:intergenic | 45.0% | |
| TGCCAAGTATTCCTCGATGA+TGG | - | chr3_3:40652838-40652857 | Msa0452040:CDS | 45.0% | |
| GACCATCATCGAGGAATACT+TGG | + | chr3_3:40652843-40652862 | None:intergenic | 45.0% | |
| ATGAGAGCAAGATCCAGCAT+TGG | + | chr3_3:40653272-40653291 | None:intergenic | 45.0% | |
| CACTCGAATTTCGCACTTAC+TGG | + | chr3_3:40653332-40653351 | None:intergenic | 45.0% | |
| GTGCGAAATTCGAGTGAATC+GGG | - | chr3_3:40653336-40653355 | Msa0452040:CDS | 45.0% | |
| TGCGAAATTCGAGTGAATCG+GGG | - | chr3_3:40653337-40653356 | Msa0452040:CDS | 45.0% | |
| TCGAGGAATACTTGGCACGA+CGG | + | chr3_3:40652835-40652854 | None:intergenic | 50.0% | |
| ATGGTAGAGGACCATCATCG+AGG | + | chr3_3:40652852-40652871 | None:intergenic | 50.0% | |
| !! | CTTGCCGACTTACACACAGA+TGG | - | chr3_3:40653201-40653220 | Msa0452040:CDS | 50.0% |
| ATAACAACACACCTGCACCG+CGG | + | chr3_3:40653439-40653458 | None:intergenic | 50.0% | |
| TCGAGGAATACTTGGCACGA+CGG | + | chr3_3:40652835-40652854 | None:intergenic | 50.0% | |
| ATGGTAGAGGACCATCATCG+AGG | + | chr3_3:40652852-40652871 | None:intergenic | 50.0% | |
| !! | CTTGCCGACTTACACACAGA+TGG | - | chr3_3:40653201-40653220 | Msa0452040:CDS | 50.0% |
| ATAACAACACACCTGCACCG+CGG | + | chr3_3:40653439-40653458 | None:intergenic | 50.0% | |
| GCAGAGCAAATGGTGCACTC+TGG | + | chr3_3:40652968-40652987 | None:intergenic | 55.0% | |
| CAATGTCGTGCAGCCAATGC+TGG | - | chr3_3:40653256-40653275 | Msa0452040:CDS | 55.0% | |
| ACTCGGAGTGTAGCATTCCG+CGG | - | chr3_3:40653419-40653438 | Msa0452040:CDS | 55.0% | |
| GCAGAGCAAATGGTGCACTC+TGG | + | chr3_3:40652968-40652987 | None:intergenic | 55.0% | |
| CAATGTCGTGCAGCCAATGC+TGG | - | chr3_3:40653256-40653275 | Msa0452040:CDS | 55.0% | |
| ACTCGGAGTGTAGCATTCCG+CGG | - | chr3_3:40653419-40653438 | Msa0452040:CDS | 55.0% | |
| AGTGTAGCATTCCGCGGTGC+AGG | - | chr3_3:40653425-40653444 | Msa0452040:CDS | 60.0% | |
| AGTGTAGCATTCCGCGGTGC+AGG | - | chr3_3:40653425-40653444 | Msa0452040:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 40652537 | 40653661 | 40652537 | ID=Msa0452040;Name=Msa0452040 |
| chr3_3 | mRNA | 40652537 | 40653661 | 40652537 | ID=Msa0452040-mRNA-1;Parent=Msa0452040;Name=Msa0452040-mRNA-1;_AED=0.28;_eAED=0.47;_QI=0|0|0|0.75|1|1|4|0|265 |
| chr3_3 | exon | 40653578 | 40653661 | 40653578 | ID=Msa0452040-mRNA-1:exon:7404;Parent=Msa0452040-mRNA-1 |
| chr3_3 | exon | 40653066 | 40653491 | 40653066 | ID=Msa0452040-mRNA-1:exon:7403;Parent=Msa0452040-mRNA-1 |
| chr3_3 | exon | 40652752 | 40652978 | 40652752 | ID=Msa0452040-mRNA-1:exon:7402;Parent=Msa0452040-mRNA-1 |
| chr3_3 | exon | 40652537 | 40652597 | 40652537 | ID=Msa0452040-mRNA-1:exon:7401;Parent=Msa0452040-mRNA-1 |
| chr3_3 | CDS | 40653578 | 40653661 | 40653578 | ID=Msa0452040-mRNA-1:cds;Parent=Msa0452040-mRNA-1 |
| chr3_3 | CDS | 40653066 | 40653491 | 40653066 | ID=Msa0452040-mRNA-1:cds;Parent=Msa0452040-mRNA-1 |
| chr3_3 | CDS | 40652752 | 40652978 | 40652752 | ID=Msa0452040-mRNA-1:cds;Parent=Msa0452040-mRNA-1 |
| chr3_3 | CDS | 40652537 | 40652597 | 40652537 | ID=Msa0452040-mRNA-1:cds;Parent=Msa0452040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
