AlfalfaGEDB | Msa0452840

M. sativa cultivar zhongmu-4 / Msa0452840

KEGG: -
GO: GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001101 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009657 GO:0009658 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010114 GO:0010151 GO:0010167 GO:0010187 GO:0010380 GO:0010467 GO:0010468 GO:0010476 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0032991 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043610 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0080050 GO:0080090 GO:0090056 GO:0090304 GO:0090693 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1900140 GO:1901360 GO:1901362 GO:1901363 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1901576 GO:1901698 GO:1901700 GO:1901701 GO:1902326 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141
PFAM: PF00320.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0452840	ACJ84046.1	76.812	138	9	1	15	129	108	245	4.03e-65	210

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0452840	sp\|Q5HZ36\|GAT21_ARATH	68.627	51	15	1	54	103	213	263	9.23e-17	78.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0452840	B7FH17	76.812	138	9	1	15	129	108	245	1.93e-65	210

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TFs/TRs:

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Gene ID	Type	Classification
Msa0452840	TF	C2C2-GATA

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0452840	MtrunA17_Chr1g0151461	76.812	138	9	1	15	129	109	246	3.74e-69	210
Msa0452840	MtrunA17_Chr4g0068031	52.542	59	28	0	56	114	16	74	7.54e-16	69.3
Msa0452840	MtrunA17_Chr4g0071301	45.833	96	30	4	16	99	136	221	1.94e-15	71.2
Msa0452840	MtrunA17_Chr2g0299081	46.491	114	47	3	1	114	114	213	5.82e-14	67.0
Msa0452840	MtrunA17_Chr7g0271861	38.750	80	33	2	70	133	22	101	2.89e-13	62.4
Msa0452840	MtrunA17_Chr5g0404131	55.769	52	20	1	58	106	177	228	1.39e-12	63.2
Msa0452840	MtrunA17_Chr8g0373231	63.158	38	14	0	69	106	124	161	1.54e-11	59.7
Msa0452840	MtrunA17_Chr1g0213161	59.459	37	15	0	69	105	151	187	2.05e-11	59.3
Msa0452840	MtrunA17_Chr5g0395391	52.941	51	23	1	56	105	153	203	2.53e-11	59.7
Msa0452840	MtrunA17_Chr1g0199671	56.098	41	18	0	65	105	237	277	4.52e-11	58.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0452840	AT5G56860.1	68.627	51	15	1	54	103	213	263	9.38e-18	78.6
Msa0452840	AT5G49300.1	57.407	54	23	0	66	119	32	85	3.07e-17	73.2
Msa0452840	AT4G26150.1	45.455	88	40	2	16	101	149	230	2.05e-16	74.3
Msa0452840	AT5G26930.1	65.854	41	14	0	67	107	23	63	1.12e-15	68.6
Msa0452840	AT4G16141.1	65.854	41	14	0	67	107	34	74	2.44e-14	67.0
Msa0452840	AT3G06740.1	64.286	42	15	0	67	108	38	79	3.67e-14	65.5
Msa0452840	AT3G16870.1	54.098	61	24	1	67	127	39	95	3.99e-14	66.2
Msa0452840	AT4G36620.1	57.778	45	19	0	69	113	74	118	3.69e-12	61.2
Msa0452840	AT2G18380.1	63.415	41	14	1	70	109	92	132	8.82e-12	60.1
Msa0452840	AT2G45050.1	46.000	50	27	0	56	105	165	214	3.20e-11	59.3

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Find 39 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAATAGTCATGGAGAAA+TGG	0.415234	3_3:-42406085	Msa0452840:CDS
AATGGATGTCTTCAAAGATG+AGG	0.632702	3_3:-42406067	Msa0452840:intron
ACAAGCCCTAGTAGTAACAG+CGG	0.724459	3_3:-42405872	Msa0452840:CDS
ACAATCAGAACAAACCCTAA+CGG	0.662845	3_3:+42405841	None:intergenic
ACAGCGGTAACAACACCGTT+AGG	0.456940	3_3:-42405856	Msa0452840:CDS
ACTCCTCCAAAGTGGGGTAT+GGG	0.495268	3_3:+42405811	None:intergenic
ACTTTGGAGGAGTGGCCCTA+TGG	0.441269	3_3:-42405801	Msa0452840:CDS
AGGGCCACTCCTCCAAAGTG+GGG	0.692599	3_3:+42405805	None:intergenic
AGTGGATGTAGCCAATCCAT+TGG	0.545257	3_3:+42405157	None:intergenic
ATAGGGCCACTCCTCCAAAG+TGG	0.665162	3_3:+42405803	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAATAGTCATGGAGAAA+TGG	-	chr3_3:42405134-42405153	Msa0452840:CDS	30.0%
TAATTACTAGGTCTCATCAT+TGG	+	chr3_3:42405287-42405306	None:intergenic	30.0%
ATGATGAGACCTAGTAATTA+CGG	-	chr3_3:42405287-42405306	Msa0452840:intron	30.0%
TAGGTTACGTTTACAAAGTA+AGG	+	chr3_3:42406115-42406134	None:intergenic	30.0%
AAAGAATAGTCATGGAGAAA+TGG	-	chr3_3:42405134-42405153	Msa0452840:CDS	30.0%
TAATTACTAGGTCTCATCAT+TGG	+	chr3_3:42405287-42405306	None:intergenic	30.0%
ATGATGAGACCTAGTAATTA+CGG	-	chr3_3:42405287-42405306	Msa0452840:intron	30.0%
TAGGTTACGTTTACAAAGTA+AGG	+	chr3_3:42406115-42406134	None:intergenic	30.0%
AGCAGCAAAAAGAATAGTCA+TGG	-	chr3_3:42405126-42405145	Msa0452840:CDS	35.0%
AATGGATGTCTTCAAAGATG+AGG	-	chr3_3:42405152-42405171	Msa0452840:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	42405106	42406135	42405106	ID=Msa0452840;Name=Msa0452840
chr3_3	mRNA	42405106	42406135	42405106	ID=Msa0452840-mRNA-1;Parent=Msa0452840;Name=Msa0452840-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0\|0\|0\|0.66\|0.5\|0.33\|3\|0\|135
chr3_3	exon	42406068	42406135	42406068	ID=Msa0452840-mRNA-1:exon:7698;Parent=Msa0452840-mRNA-1
chr3_3	exon	42405793	42405997	42405793	ID=Msa0452840-mRNA-1:exon:7697;Parent=Msa0452840-mRNA-1
chr3_3	exon	42405106	42405240	42405106	ID=Msa0452840-mRNA-1:exon:7696;Parent=Msa0452840-mRNA-1
chr3_3	CDS	42406068	42406135	42406068	ID=Msa0452840-mRNA-1:cds;Parent=Msa0452840-mRNA-1
chr3_3	CDS	42405793	42405997	42405793	ID=Msa0452840-mRNA-1:cds;Parent=Msa0452840-mRNA-1
chr3_3	CDS	42405106	42405240	42405106	ID=Msa0452840-mRNA-1:cds;Parent=Msa0452840-mRNA-1

Gene Sequence

>Msa0452840

ATGAGTCTGTTATGGAAGATAGCAGCAAAAAGAATAGTCATGGAGAAATGGATGTCTTCAAAGATGAGTATTGCAGCCACTACTGACAAAGCTATCAAGACAACAACTCCAATGATGAGACCTAGTAATTACGGCACTAGTCCAAGATATCAAAATATAAGGTACAACCAAACAAGCCCTAGTAGTAACAGCGGTAACAACACCGTTAGGGTTTGTTCTGATTGTAGTGCATCCCATACCCCACTTTGGAGGAGTGGCCCTATGGGTCCTAAGTCACTTTGCAATGCTTGTGGAATCAGGCAGAGAAAGGCAAGAAGGGCCATGGCTGAAGCTGCCAATGGATTGGCTACATCCACTAAAACTAAAGTGCTTAAGATAAATAAGCCTTACTTTGTAAACGTAACCTAG

Protein sequence

>Msa0452840

MSLLWKIAAKRIVMEKWMSSKMSIAATTDKAIKTTTPMMRPSNYGTSPRYQNIRYNQTSPSSNSGNNTVRVCSDCSASHTPLWRSGPMGPKSLCNACGIRQRKARRAMAEAANGLATSTKTKVLKINKPYFVNVT*