AlfalfaGEDB | Msa0452840

M. sativa cultivar zhongmu-4 / Msa0452840

KEGG: -
GO: GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001101 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009657 GO:0009658 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010114 GO:0010151 GO:0010167 GO:0010187 GO:0010380 GO:0010467 GO:0010468 GO:0010476 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0032991 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043610 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0080050 GO:0080090 GO:0090056 GO:0090304 GO:0090693 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1900140 GO:1901360 GO:1901362 GO:1901363 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1901576 GO:1901698 GO:1901700 GO:1901701 GO:1902326 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141
PFAM: PF00320.30

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0452840	ACJ84046.1	76.812	138	9	1	15	129	108	245	4.03e-65	210

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0452840	sp\|Q5HZ36\|GAT21_ARATH	68.627	51	15	1	54	103	213	263	9.23e-17	78.6

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0452840	B7FH17	76.812	138	9	1	15	129	108	245	1.93e-65	210

TFs/TRs:

Gene ID	Type	Classification
Msa0452840	TF	C2C2-GATA

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0452840	MtrunA17_Chr1g0151461	76.812	138	9	1	15	129	109	246	3.74e-69	210
Msa0452840	MtrunA17_Chr4g0068031	52.542	59	28	0	56	114	16	74	7.54e-16	69.3
Msa0452840	MtrunA17_Chr4g0071301	45.833	96	30	4	16	99	136	221	1.94e-15	71.2
Msa0452840	MtrunA17_Chr2g0299081	46.491	114	47	3	1	114	114	213	5.82e-14	67.0
Msa0452840	MtrunA17_Chr7g0271861	38.750	80	33	2	70	133	22	101	2.89e-13	62.4
Msa0452840	MtrunA17_Chr5g0404131	55.769	52	20	1	58	106	177	228	1.39e-12	63.2
Msa0452840	MtrunA17_Chr8g0373231	63.158	38	14	0	69	106	124	161	1.54e-11	59.7
Msa0452840	MtrunA17_Chr1g0213161	59.459	37	15	0	69	105	151	187	2.05e-11	59.3
Msa0452840	MtrunA17_Chr5g0395391	52.941	51	23	1	56	105	153	203	2.53e-11	59.7
Msa0452840	MtrunA17_Chr1g0199671	56.098	41	18	0	65	105	237	277	4.52e-11	58.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0452840	AT5G56860.1	68.627	51	15	1	54	103	213	263	9.38e-18	78.6
Msa0452840	AT5G49300.1	57.407	54	23	0	66	119	32	85	3.07e-17	73.2
Msa0452840	AT4G26150.1	45.455	88	40	2	16	101	149	230	2.05e-16	74.3
Msa0452840	AT5G26930.1	65.854	41	14	0	67	107	23	63	1.12e-15	68.6
Msa0452840	AT4G16141.1	65.854	41	14	0	67	107	34	74	2.44e-14	67.0
Msa0452840	AT3G06740.1	64.286	42	15	0	67	108	38	79	3.67e-14	65.5
Msa0452840	AT3G16870.1	54.098	61	24	1	67	127	39	95	3.99e-14	66.2
Msa0452840	AT4G36620.1	57.778	45	19	0	69	113	74	118	3.69e-12	61.2
Msa0452840	AT2G18380.1	63.415	41	14	1	70	109	92	132	8.82e-12	60.1
Msa0452840	AT2G45050.1	46.000	50	27	0	56	105	165	214	3.20e-11	59.3
Msa0452840	AT3G50870.1	56.522	46	19	1	69	113	151	196	4.08e-11	59.3
Msa0452840	AT5G25830.1	53.333	45	21	0	61	105	210	254	4.93e-11	59.3

Find 39 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TAGGTTACGTTTACAAAGTA+AGG	0.335349	3_3:+42405107	None:intergenic
TTGTTACCGCTGTTACTACT+AGG	0.336848	3_3:+42405866	None:intergenic
TGTTACTACTAGGGCTTGTT+TGG	0.337618	3_3:+42405876	None:intergenic
GTCCAAGATATCAAAATATA+AGG	0.343709	3_3:-42405904	Msa0452840:CDS
TTTGCAATGCTTGTGGAATC+AGG	0.357272	3_3:-42405214	Msa0452840:CDS
CTGCTATCATGAGTCTGTTA+TGG	0.380773	3_3:-42406121	None:intergenic
CACTCCTCCAAAGTGGGGTA+TGG	0.383367	3_3:+42405810	None:intergenic
AAAGAATAGTCATGGAGAAA+TGG	0.415234	3_3:-42406085	Msa0452840:CDS
CTTTGGAGGAGTGGCCCTAT+GGG	0.439971	3_3:-42405800	Msa0452840:CDS
ACTTTGGAGGAGTGGCCCTA+TGG	0.441269	3_3:-42405801	Msa0452840:CDS
ACAGCGGTAACAACACCGTT+AGG	0.456940	3_3:-42405856	Msa0452840:CDS
ATGATGAGACCTAGTAATTA+CGG	0.457157	3_3:-42405932	Msa0452840:CDS
CTTGATAGCTTTGTCAGTAG+TGG	0.482210	3_3:+42405967	None:intergenic
ACTCCTCCAAAGTGGGGTAT+GGG	0.495268	3_3:+42405811	None:intergenic
TAATTACTAGGTCTCATCAT+TGG	0.500101	3_3:+42405935	None:intergenic
GGACTAGTGCCGTAATTACT+AGG	0.503988	3_3:+42405923	None:intergenic
GTGCATCCCATACCCCACTT+TGG	0.514341	3_3:-42405817	Msa0452840:CDS
GGCTGAAGCTGCCAATGGAT+TGG	0.519083	3_3:-42405168	Msa0452840:CDS
TCAGGCAGAGAAAGGCAAGA+AGG	0.520139	3_3:-42405196	Msa0452840:CDS
CAGGCAGAGAAAGGCAAGAA+GGG	0.526577	3_3:-42405195	Msa0452840:CDS
GAGTGGCCCTATGGGTCCTA+AGG	0.528357	3_3:-42405792	Msa0452840:intron
CGAATTACCTTAGGACCCAT+AGG	0.541287	3_3:+42405785	None:intergenic
CAGTCACTTTGCAATGCTTG+TGG	0.543553	3_3:-42405221	Msa0452840:CDS
AGTGGATGTAGCCAATCCAT+TGG	0.545257	3_3:+42405157	None:intergenic
CAGCGGTAACAACACCGTTA+GGG	0.546032	3_3:-42405855	Msa0452840:CDS
TTGTGGAATCAGGCAGAGAA+AGG	0.551715	3_3:-42405204	Msa0452840:CDS
TGTTACCGCTGTTACTACTA+GGG	0.563428	3_3:+42405867	None:intergenic
TAGGGCCACTCCTCCAAAGT+GGG	0.565226	3_3:+42405804	None:intergenic
TCCATTGGCAGCTTCAGCCA+TGG	0.575840	3_3:+42405172	None:intergenic
CATCCCATACCCCACTTTGG+AGG	0.581850	3_3:-42405814	Msa0452840:CDS
GCCATGGCTGAAGCTGCCAA+TGG	0.585473	3_3:-42405173	Msa0452840:CDS
GAGAAAGGCAAGAAGGGCCA+TGG	0.585866	3_3:-42405189	Msa0452840:CDS
GAATTACCTTAGGACCCATA+GGG	0.604094	3_3:+42405786	None:intergenic
CATACCCCACTTTGGAGGAG+TGG	0.615240	3_3:-42405809	Msa0452840:CDS
AATGGATGTCTTCAAAGATG+AGG	0.632702	3_3:-42406067	Msa0452840:intron
ACAATCAGAACAAACCCTAA+CGG	0.662845	3_3:+42405841	None:intergenic
ATAGGGCCACTCCTCCAAAG+TGG	0.665162	3_3:+42405803	None:intergenic
AGGGCCACTCCTCCAAAGTG+GGG	0.692599	3_3:+42405805	None:intergenic
ACAAGCCCTAGTAGTAACAG+CGG	0.724459	3_3:-42405872	Msa0452840:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTTTTTATAAAAAAAATTA+TGG	+	chr3_3:42405619-42405638	None:intergenic	0.0%
!!!	TAATTTTTAATATTATATAA+CGG	-	chr3_3:42405818-42405837	Msa0452840:CDS	0.0%
!!!	TTTTTTTATAAAAAAAATTA+TGG	+	chr3_3:42405619-42405638	None:intergenic	0.0%
!!!	TAATTTTTAATATTATATAA+CGG	-	chr3_3:42405818-42405837	Msa0452840:CDS	0.0%
!!	ATTAATATTTATTGTTCATA+AGG	-	chr3_3:42405563-42405582	Msa0452840:intron	10.0%
!!	TTAATATTTATTGTTCATAA+GGG	-	chr3_3:42405564-42405583	Msa0452840:intron	10.0%
!!	ATTAATATTTATTGTTCATA+AGG	-	chr3_3:42405563-42405582	Msa0452840:intron	10.0%
!!	TTAATATTTATTGTTCATAA+GGG	-	chr3_3:42405564-42405583	Msa0452840:intron	10.0%
!!!	GATATTAATAATTTTTGTGA+TGG	+	chr3_3:42405525-42405544	None:intergenic	15.0%
!!!	TATTAATATATTTTGTTGAG+TGG	+	chr3_3:42405550-42405569	None:intergenic	15.0%
!!	TAATCAAATAGATAATATAG+AGG	+	chr3_3:42405700-42405719	None:intergenic	15.0%
!!	TAATCAAATTAAGATTAAGA+TGG	+	chr3_3:42405897-42405916	None:intergenic	15.0%
!!!	ACATGTTTTTATTTTTTTGA+AGG	+	chr3_3:42405973-42405992	None:intergenic	15.0%
!!	TCAAAAAAATAAAAACATGT+TGG	-	chr3_3:42405973-42405992	Msa0452840:CDS	15.0%
!!!	GATATTAATAATTTTTGTGA+TGG	+	chr3_3:42405525-42405544	None:intergenic	15.0%
!!!	TATTAATATATTTTGTTGAG+TGG	+	chr3_3:42405550-42405569	None:intergenic	15.0%
!!	TAATCAAATAGATAATATAG+AGG	+	chr3_3:42405700-42405719	None:intergenic	15.0%
!!	TAATCAAATTAAGATTAAGA+TGG	+	chr3_3:42405897-42405916	None:intergenic	15.0%
!!!	ACATGTTTTTATTTTTTTGA+AGG	+	chr3_3:42405973-42405992	None:intergenic	15.0%
!!	TCAAAAAAATAAAAACATGT+TGG	-	chr3_3:42405973-42405992	Msa0452840:CDS	15.0%
!!!	TACCTTATATTTTGATATCT+TGG	+	chr3_3:42405320-42405339	None:intergenic	20.0%
!!	AAAGAATAGTGAATAAGTTT+GGG	+	chr3_3:42405472-42405491	None:intergenic	20.0%
!!!	TACCTTATATTTTGATATCT+TGG	+	chr3_3:42405320-42405339	None:intergenic	20.0%
!!	AAAGAATAGTGAATAAGTTT+GGG	+	chr3_3:42405472-42405491	None:intergenic	20.0%
!	GTCCAAGATATCAAAATATA+AGG	-	chr3_3:42405315-42405334	Msa0452840:intron	25.0%
!	ATAGTTTAACGAATTACCTT+AGG	+	chr3_3:42405446-42405465	None:intergenic	25.0%
!	GAAAGAATAGTGAATAAGTT+TGG	+	chr3_3:42405473-42405492	None:intergenic	25.0%
!!!	TCAAGCTTTTTTTTTGTTGA+AGG	-	chr3_3:42405759-42405778	Msa0452840:intron	25.0%
!	TAGTTAACATGAAAACATGT+TGG	-	chr3_3:42405945-42405964	Msa0452840:CDS	25.0%
!	GTCCAAGATATCAAAATATA+AGG	-	chr3_3:42405315-42405334	Msa0452840:intron	25.0%
!	ATAGTTTAACGAATTACCTT+AGG	+	chr3_3:42405446-42405465	None:intergenic	25.0%
!	GAAAGAATAGTGAATAAGTT+TGG	+	chr3_3:42405473-42405492	None:intergenic	25.0%
!!!	TCAAGCTTTTTTTTTGTTGA+AGG	-	chr3_3:42405759-42405778	Msa0452840:intron	25.0%
!	TAGTTAACATGAAAACATGT+TGG	-	chr3_3:42405945-42405964	Msa0452840:CDS	25.0%
	AAAGAATAGTCATGGAGAAA+TGG	-	chr3_3:42405134-42405153	Msa0452840:CDS	30.0%
!	TGTTGTTTGGTCTCATATAT+TGG	+	chr3_3:42405223-42405242	None:intergenic	30.0%
	TAATTACTAGGTCTCATCAT+TGG	+	chr3_3:42405287-42405306	None:intergenic	30.0%
	ATGATGAGACCTAGTAATTA+CGG	-	chr3_3:42405287-42405306	Msa0452840:intron	30.0%
!!!	CTTAAGCACTTTAGTTTTAG+TGG	+	chr3_3:42406083-42406102	None:intergenic	30.0%
	TAGGTTACGTTTACAAAGTA+AGG	+	chr3_3:42406115-42406134	None:intergenic	30.0%
	AAAGAATAGTCATGGAGAAA+TGG	-	chr3_3:42405134-42405153	Msa0452840:CDS	30.0%
!	TGTTGTTTGGTCTCATATAT+TGG	+	chr3_3:42405223-42405242	None:intergenic	30.0%
	TAATTACTAGGTCTCATCAT+TGG	+	chr3_3:42405287-42405306	None:intergenic	30.0%
	ATGATGAGACCTAGTAATTA+CGG	-	chr3_3:42405287-42405306	Msa0452840:intron	30.0%
!!!	CTTAAGCACTTTAGTTTTAG+TGG	+	chr3_3:42406083-42406102	None:intergenic	30.0%
	TAGGTTACGTTTACAAAGTA+AGG	+	chr3_3:42406115-42406134	None:intergenic	30.0%
	AGCAGCAAAAAGAATAGTCA+TGG	-	chr3_3:42405126-42405145	Msa0452840:CDS	35.0%
	AATGGATGTCTTCAAAGATG+AGG	-	chr3_3:42405152-42405171	Msa0452840:CDS	35.0%
	ACAATCAGAACAAACCCTAA+CGG	+	chr3_3:42405381-42405400	None:intergenic	35.0%
!	TTAAAGTGTTTGAGTGACCT+TGG	-	chr3_3:42405496-42405515	Msa0452840:intron	35.0%
!!!	AATTTTTGTGATGGACACCA+AGG	+	chr3_3:42405516-42405535	None:intergenic	35.0%
	CATAAGGGATGTGTCAAATA+TGG	-	chr3_3:42405579-42405598	Msa0452840:intron	35.0%
	AGCAGCAAAAAGAATAGTCA+TGG	-	chr3_3:42405126-42405145	Msa0452840:CDS	35.0%
	AATGGATGTCTTCAAAGATG+AGG	-	chr3_3:42405152-42405171	Msa0452840:CDS	35.0%
	ACAATCAGAACAAACCCTAA+CGG	+	chr3_3:42405381-42405400	None:intergenic	35.0%
!	TTAAAGTGTTTGAGTGACCT+TGG	-	chr3_3:42405496-42405515	Msa0452840:intron	35.0%
!!!	AATTTTTGTGATGGACACCA+AGG	+	chr3_3:42405516-42405535	None:intergenic	35.0%
	CATAAGGGATGTGTCAAATA+TGG	-	chr3_3:42405579-42405598	Msa0452840:intron	35.0%
	GGTCTCATATATTGGAGTTG+TGG	+	chr3_3:42405215-42405234	None:intergenic	40.0%
!!	CTTGATAGCTTTGTCAGTAG+TGG	+	chr3_3:42405255-42405274	None:intergenic	40.0%
!	TGTTACTACTAGGGCTTGTT+TGG	+	chr3_3:42405346-42405365	None:intergenic	40.0%
	TGTTACCGCTGTTACTACTA+GGG	+	chr3_3:42405355-42405374	None:intergenic	40.0%
	TTGTTACCGCTGTTACTACT+AGG	+	chr3_3:42405356-42405375	None:intergenic	40.0%
	GAATTACCTTAGGACCCATA+GGG	+	chr3_3:42405436-42405455	None:intergenic	40.0%
	TTTGCAATGCTTGTGGAATC+AGG	-	chr3_3:42406005-42406024	Msa0452840:intron	40.0%
	GGTCTCATATATTGGAGTTG+TGG	+	chr3_3:42405215-42405234	None:intergenic	40.0%
!!	CTTGATAGCTTTGTCAGTAG+TGG	+	chr3_3:42405255-42405274	None:intergenic	40.0%
!	TGTTACTACTAGGGCTTGTT+TGG	+	chr3_3:42405346-42405365	None:intergenic	40.0%
	TGTTACCGCTGTTACTACTA+GGG	+	chr3_3:42405355-42405374	None:intergenic	40.0%
	TTGTTACCGCTGTTACTACT+AGG	+	chr3_3:42405356-42405375	None:intergenic	40.0%
	GAATTACCTTAGGACCCATA+GGG	+	chr3_3:42405436-42405455	None:intergenic	40.0%
	TTTGCAATGCTTGTGGAATC+AGG	-	chr3_3:42406005-42406024	Msa0452840:intron	40.0%
	GTGGCTGCAATACTGTTGTT+TGG	+	chr3_3:42405236-42405255	None:intergenic	45.0%
!	GGACTAGTGCCGTAATTACT+AGG	+	chr3_3:42405299-42405318	None:intergenic	45.0%
	ACAAGCCCTAGTAGTAACAG+CGG	-	chr3_3:42405347-42405366	Msa0452840:intron	45.0%
	CGAATTACCTTAGGACCCAT+AGG	+	chr3_3:42405437-42405456	None:intergenic	45.0%
!	CAGTCACTTTGCAATGCTTG+TGG	-	chr3_3:42405998-42406017	Msa0452840:intron	45.0%
	TTGTGGAATCAGGCAGAGAA+AGG	-	chr3_3:42406015-42406034	Msa0452840:intron	45.0%
	AGTGGATGTAGCCAATCCAT+TGG	+	chr3_3:42406065-42406084	None:intergenic	45.0%
	GTGGCTGCAATACTGTTGTT+TGG	+	chr3_3:42405236-42405255	None:intergenic	45.0%
!	GGACTAGTGCCGTAATTACT+AGG	+	chr3_3:42405299-42405318	None:intergenic	45.0%
	ACAAGCCCTAGTAGTAACAG+CGG	-	chr3_3:42405347-42405366	Msa0452840:intron	45.0%
	CGAATTACCTTAGGACCCAT+AGG	+	chr3_3:42405437-42405456	None:intergenic	45.0%
!	CAGTCACTTTGCAATGCTTG+TGG	-	chr3_3:42405998-42406017	Msa0452840:intron	45.0%
	TTGTGGAATCAGGCAGAGAA+AGG	-	chr3_3:42406015-42406034	Msa0452840:intron	45.0%
	AGTGGATGTAGCCAATCCAT+TGG	+	chr3_3:42406065-42406084	None:intergenic	45.0%
	ACAGCGGTAACAACACCGTT+AGG	-	chr3_3:42405363-42405382	Msa0452840:intron	50.0%
	CAGCGGTAACAACACCGTTA+GGG	-	chr3_3:42405364-42405383	Msa0452840:intron	50.0%
	ACTCCTCCAAAGTGGGGTAT+GGG	+	chr3_3:42405411-42405430	None:intergenic	50.0%
	TCAGGCAGAGAAAGGCAAGA+AGG	-	chr3_3:42406023-42406042	Msa0452840:intron	50.0%
	CAGGCAGAGAAAGGCAAGAA+GGG	-	chr3_3:42406024-42406043	Msa0452840:intron	50.0%
	ACAGCGGTAACAACACCGTT+AGG	-	chr3_3:42405363-42405382	Msa0452840:intron	50.0%
	CAGCGGTAACAACACCGTTA+GGG	-	chr3_3:42405364-42405383	Msa0452840:intron	50.0%
	ACTCCTCCAAAGTGGGGTAT+GGG	+	chr3_3:42405411-42405430	None:intergenic	50.0%
	TCAGGCAGAGAAAGGCAAGA+AGG	-	chr3_3:42406023-42406042	Msa0452840:intron	50.0%
	CAGGCAGAGAAAGGCAAGAA+GGG	-	chr3_3:42406024-42406043	Msa0452840:intron	50.0%
	GTGCATCCCATACCCCACTT+TGG	-	chr3_3:42405402-42405421	Msa0452840:intron	55.0%
	CATCCCATACCCCACTTTGG+AGG	-	chr3_3:42405405-42405424	Msa0452840:intron	55.0%
	CACTCCTCCAAAGTGGGGTA+TGG	+	chr3_3:42405412-42405431	None:intergenic	55.0%
!	CATACCCCACTTTGGAGGAG+TGG	-	chr3_3:42405410-42405429	Msa0452840:intron	55.0%
	TAGGGCCACTCCTCCAAAGT+GGG	+	chr3_3:42405418-42405437	None:intergenic	55.0%
	ATAGGGCCACTCCTCCAAAG+TGG	+	chr3_3:42405419-42405438	None:intergenic	55.0%
!	ACTTTGGAGGAGTGGCCCTA+TGG	-	chr3_3:42405418-42405437	Msa0452840:intron	55.0%
!	CTTTGGAGGAGTGGCCCTAT+GGG	-	chr3_3:42405419-42405438	Msa0452840:intron	55.0%
	GAGAAAGGCAAGAAGGGCCA+TGG	-	chr3_3:42406030-42406049	Msa0452840:intron	55.0%
	TCCATTGGCAGCTTCAGCCA+TGG	+	chr3_3:42406050-42406069	None:intergenic	55.0%
	GGCTGAAGCTGCCAATGGAT+TGG	-	chr3_3:42406051-42406070	Msa0452840:intron	55.0%
	GTGCATCCCATACCCCACTT+TGG	-	chr3_3:42405402-42405421	Msa0452840:intron	55.0%
	CATCCCATACCCCACTTTGG+AGG	-	chr3_3:42405405-42405424	Msa0452840:intron	55.0%
	CACTCCTCCAAAGTGGGGTA+TGG	+	chr3_3:42405412-42405431	None:intergenic	55.0%
!	CATACCCCACTTTGGAGGAG+TGG	-	chr3_3:42405410-42405429	Msa0452840:intron	55.0%
	TAGGGCCACTCCTCCAAAGT+GGG	+	chr3_3:42405418-42405437	None:intergenic	55.0%
	ATAGGGCCACTCCTCCAAAG+TGG	+	chr3_3:42405419-42405438	None:intergenic	55.0%
!	ACTTTGGAGGAGTGGCCCTA+TGG	-	chr3_3:42405418-42405437	Msa0452840:intron	55.0%
!	CTTTGGAGGAGTGGCCCTAT+GGG	-	chr3_3:42405419-42405438	Msa0452840:intron	55.0%
	GAGAAAGGCAAGAAGGGCCA+TGG	-	chr3_3:42406030-42406049	Msa0452840:intron	55.0%
	TCCATTGGCAGCTTCAGCCA+TGG	+	chr3_3:42406050-42406069	None:intergenic	55.0%
	GGCTGAAGCTGCCAATGGAT+TGG	-	chr3_3:42406051-42406070	Msa0452840:intron	55.0%
	AGGGCCACTCCTCCAAAGTG+GGG	+	chr3_3:42405417-42405436	None:intergenic	60.0%
	GAGTGGCCCTATGGGTCCTA+AGG	-	chr3_3:42405427-42405446	Msa0452840:intron	60.0%
	GCCATGGCTGAAGCTGCCAA+TGG	-	chr3_3:42406046-42406065	Msa0452840:intron	60.0%
	AGGGCCACTCCTCCAAAGTG+GGG	+	chr3_3:42405417-42405436	None:intergenic	60.0%
	GAGTGGCCCTATGGGTCCTA+AGG	-	chr3_3:42405427-42405446	Msa0452840:intron	60.0%
	GCCATGGCTGAAGCTGCCAA+TGG	-	chr3_3:42406046-42406065	Msa0452840:intron	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	42405106	42406135	42405106	ID=Msa0452840;Name=Msa0452840
chr3_3	mRNA	42405106	42406135	42405106	ID=Msa0452840-mRNA-1;Parent=Msa0452840;Name=Msa0452840-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0\|0\|0\|0.66\|0.5\|0.33\|3\|0\|135
chr3_3	exon	42406068	42406135	42406068	ID=Msa0452840-mRNA-1:exon:7698;Parent=Msa0452840-mRNA-1
chr3_3	exon	42405793	42405997	42405793	ID=Msa0452840-mRNA-1:exon:7697;Parent=Msa0452840-mRNA-1
chr3_3	exon	42405106	42405240	42405106	ID=Msa0452840-mRNA-1:exon:7696;Parent=Msa0452840-mRNA-1
chr3_3	CDS	42406068	42406135	42406068	ID=Msa0452840-mRNA-1:cds;Parent=Msa0452840-mRNA-1
chr3_3	CDS	42405793	42405997	42405793	ID=Msa0452840-mRNA-1:cds;Parent=Msa0452840-mRNA-1
chr3_3	CDS	42405106	42405240	42405106	ID=Msa0452840-mRNA-1:cds;Parent=Msa0452840-mRNA-1

Gene Sequence

>Msa0452840

ATGAGTCTGTTATGGAAGATAGCAGCAAAAAGAATAGTCATGGAGAAATGGATGTCTTCAAAGATGAGTATTGCAGCCACTACTGACAAAGCTATCAAGACAACAACTCCAATGATGAGACCTAGTAATTACGGCACTAGTCCAAGATATCAAAATATAAGGTACAACCAAACAAGCCCTAGTAGTAACAGCGGTAACAACACCGTTAGGGTTTGTTCTGATTGTAGTGCATCCCATACCCCACTTTGGAGGAGTGGCCCTATGGGTCCTAAGTCACTTTGCAATGCTTGTGGAATCAGGCAGAGAAAGGCAAGAAGGGCCATGGCTGAAGCTGCCAATGGATTGGCTACATCCACTAAAACTAAAGTGCTTAAGATAAATAAGCCTTACTTTGTAAACGTAACCTAG

Protein sequence

>Msa0452840

MSLLWKIAAKRIVMEKWMSSKMSIAATTDKAIKTTTPMMRPSNYGTSPRYQNIRYNQTSPSSNSGNNTVRVCSDCSASHTPLWRSGPMGPKSLCNACGIRQRKARRAMAEAANGLATSTKTKVLKINKPYFVNVT*