AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0453260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0453260 MtrunA17_Chr3g0099131 67.269 443 87 8 19 410 62 497 4.91e-164 471
Msa0453260 MtrunA17_Chr8g0354661 64.948 97 31 1 19 115 58 151 4.14e-33 130
Msa0453260 MtrunA17_Chr3g0080861 59.794 97 36 1 19 115 58 151 9.27e-31 123
Msa0453260 MtrunA17_Chr1g0154031 55.670 97 40 1 19 115 97 190 8.40e-29 116
Msa0453260 MtrunA17_Chr2g0322521 70.588 85 22 1 31 115 62 143 2.02e-27 112
Msa0453260 MtrunA17_Chr8g0342521 43.056 144 64 6 20 157 33 164 3.60e-26 108
Msa0453260 MtrunA17_Chr1g0193371 56.180 89 35 2 20 107 33 118 2.51e-25 106
Msa0453260 MtrunA17_Chr1g0203411 51.515 99 40 2 31 124 45 140 3.05e-25 104
Msa0453260 MtrunA17_Chr1g0192411 54.255 94 40 1 19 112 33 123 4.87e-25 105
Msa0453260 MtrunA17_Chr7g0247131 55.556 81 33 1 26 106 6 83 6.33e-25 103
Msa0453260 MtrunA17_Chr3g0099141 83.636 55 6 1 31 85 73 124 6.60e-25 99.4
Msa0453260 MtrunA17_Chr8g0342541 42.667 150 60 6 20 157 33 168 7.84e-25 104
Msa0453260 MtrunA17_Chr1g0193801 57.303 89 34 2 20 107 33 118 8.00e-25 105
Msa0453260 MtrunA17_Chr4g0058631 40.278 144 70 5 20 152 33 171 1.26e-24 103
Msa0453260 MtrunA17_Chr2g0330041 39.080 174 77 7 20 187 33 183 3.08e-24 103
Msa0453260 MtrunA17_Chr7g0270891 53.933 89 37 2 20 107 33 118 7.35e-24 102
Msa0453260 MtrunA17_Chr8g0385321 53.000 100 31 3 31 130 45 128 7.86e-24 100
Msa0453260 MtrunA17_Chr2g0328771 52.273 88 38 2 20 106 41 125 8.46e-24 100
Msa0453260 MtrunA17_Chr5g0410961 55.263 76 31 1 29 104 43 115 1.31e-23 100
Msa0453260 MtrunA17_Chr1g0211161 44.348 115 46 4 20 119 34 145 1.76e-23 98.2
Msa0453260 MtrunA17_Chr3g0117091 51.087 92 40 3 20 109 33 121 2.25e-23 100
Msa0453260 MtrunA17_Chr5g0395281 57.143 77 30 1 31 107 45 118 3.18e-23 99.0
Msa0453260 MtrunA17_Chr8g0387421 51.685 89 39 2 20 107 33 118 3.36e-23 99.4
Msa0453260 MtrunA17_Chr4g0032401 52.273 88 38 2 20 106 38 122 4.60e-23 99.0
Msa0453260 MtrunA17_Chr2g0281071 58.108 74 28 1 31 104 46 116 6.57e-23 99.0
Msa0453260 MtrunA17_Chr4g0048511 56.250 80 31 2 31 109 46 122 7.13e-23 99.0
Msa0453260 MtrunA17_Chr4g0039971 57.143 77 30 1 31 107 46 119 7.52e-23 99.0
Msa0453260 MtrunA17_Chr3g0115821 55.844 77 31 1 31 107 45 118 1.01e-22 98.2
Msa0453260 MtrunA17_Chr2g0323411 58.108 74 28 1 31 104 45 115 1.73e-22 97.4
Msa0453260 MtrunA17_Chr8g0349261 52.874 87 38 1 18 104 34 117 2.31e-22 96.3
Msa0453260 MtrunA17_Chr3g0110351 54.545 77 32 1 31 107 45 118 2.37e-22 96.7
Msa0453260 MtrunA17_Chr1g0151941 43.434 99 52 2 29 126 44 139 2.57e-22 95.5
Msa0453260 MtrunA17_Chr1g0180391 53.409 88 36 2 31 116 52 136 2.60e-22 94.7
Msa0453260 MtrunA17_Chr4g0022931 54.054 74 31 1 31 104 46 116 2.63e-22 95.9
Msa0453260 MtrunA17_Chr2g0323351 56.944 72 28 1 31 102 45 113 2.96e-22 95.1
Msa0453260 MtrunA17_Chr3g0088461 51.136 88 39 2 20 106 43 127 2.99e-22 97.1
Msa0453260 MtrunA17_Chr8g0342481 51.724 87 37 2 20 104 33 116 3.05e-22 97.8
Msa0453260 MtrunA17_Chr3g0131121 49.524 105 39 3 31 130 45 140 3.28e-22 95.9
Msa0453260 MtrunA17_Chr5g0434571 54.545 77 32 1 31 107 81 154 3.43e-22 97.1
Msa0453260 MtrunA17_Chr4g0013361 48.421 95 37 3 32 126 44 126 4.01e-22 95.9
Msa0453260 MtrunA17_Chr5g0397231 54.321 81 33 2 20 99 33 110 5.37e-22 96.3
Msa0453260 MtrunA17_Chr4g0057031 55.405 74 30 1 31 104 45 115 5.61e-22 94.7
Msa0453260 MtrunA17_Chr5g0435101 55.556 72 29 1 31 102 44 112 6.50e-22 93.2
Msa0453260 MtrunA17_Chr1g0152011 51.111 90 41 1 15 104 30 116 6.96e-22 95.9
Msa0453260 MtrunA17_Chr5g0400821 50.000 90 42 1 15 104 30 116 6.99e-22 95.5
Msa0453260 MtrunA17_Chr2g0309911 52.500 80 34 2 31 109 44 120 1.29e-21 94.7
Msa0453260 MtrunA17_Chr4g0028311 48.889 90 43 1 15 104 30 116 1.41e-21 94.7
Msa0453260 MtrunA17_Chr7g0217741 55.263 76 31 1 29 104 43 115 1.48e-21 94.4
Msa0453260 MtrunA17_Chr4g0022901 52.703 74 32 1 31 104 46 116 1.48e-21 93.6
Msa0453260 MtrunA17_Chr4g0042671 50.000 92 42 2 19 109 33 121 1.83e-21 95.5
Msa0453260 MtrunA17_Chr8g0334881 54.667 75 32 1 32 106 44 116 2.31e-21 94.0
Msa0453260 MtrunA17_Chr2g0327351 51.765 85 38 1 15 99 30 111 2.32e-21 94.0
Msa0453260 MtrunA17_Chr4g0037141 56.757 74 29 1 31 104 45 115 2.37e-21 93.2
Msa0453260 MtrunA17_Chr4g0055981 46.465 99 43 2 31 129 88 176 4.56e-21 91.3
Msa0453260 MtrunA17_Chr7g0271241 56.250 80 31 2 20 98 33 109 4.63e-21 94.0
Msa0453260 MtrunA17_Chr7g0228231 51.282 78 35 1 31 108 47 121 5.38e-21 90.5
Msa0453260 MtrunA17_Chr4g0022911 51.351 74 33 1 31 104 46 116 5.75e-21 92.4
Msa0453260 MtrunA17_Chr7g0228891 52.632 76 33 1 31 106 45 117 9.91e-21 91.3
Msa0453260 MtrunA17_Chr8g0346561 46.875 96 46 2 29 122 43 135 1.45e-20 91.3
Msa0453260 MtrunA17_Chr6g0453471 53.947 76 32 1 29 104 43 115 1.48e-20 92.4
Msa0453260 MtrunA17_Chr3g0103281 54.054 74 31 1 31 104 45 115 2.18e-20 91.3
Msa0453260 MtrunA17_Chr1g0203441 47.368 95 46 2 20 113 34 125 2.66e-20 90.1
Msa0453260 MtrunA17_Chr3g0135311 48.276 87 42 1 18 104 33 116 3.03e-20 91.3
Msa0453260 MtrunA17_Chr2g0327821 40.000 120 63 3 31 146 39 153 3.30e-20 89.0
Msa0453260 MtrunA17_Chr7g0274581 52.703 74 32 1 31 104 45 115 3.52e-20 88.2
Msa0453260 MtrunA17_Chr4g0070611 50.602 83 34 2 29 107 43 122 3.84e-20 90.5
Msa0453260 MtrunA17_Chr7g0217221 46.067 89 45 1 19 107 33 118 5.06e-20 89.4
Msa0453260 MtrunA17_Chr4g0054391 32.418 182 90 6 18 170 33 210 5.32e-20 89.7
Msa0453260 MtrunA17_Chr4g0022891 54.167 72 30 1 31 102 45 113 5.38e-20 88.6
Msa0453260 MtrunA17_Chr1g0209661 49.351 77 36 1 31 107 60 133 6.41e-20 89.7
Msa0453260 MtrunA17_Chr6g0450101 46.067 89 45 1 19 107 35 120 7.26e-20 87.4
Msa0453260 MtrunA17_Chr7g0261281 51.316 76 34 1 29 104 43 115 7.83e-20 89.0
Msa0453260 MtrunA17_Chr4g0030881 50.000 76 35 1 32 107 48 120 7.83e-20 88.6
Msa0453260 MtrunA17_Chr7g0264641 47.778 90 44 1 15 104 30 116 8.13e-20 88.6
Msa0453260 MtrunA17_Chr4g0022881 54.167 72 30 1 31 102 45 113 8.64e-20 87.8
Msa0453260 MtrunA17_Chr4g0070641 50.602 83 34 2 29 107 43 122 1.07e-19 85.9
Msa0453260 MtrunA17_Chr4g0060721 48.837 86 41 1 19 104 34 116 1.16e-19 89.4
Msa0453260 MtrunA17_Chr1g0167691 50.000 74 34 1 31 104 45 115 1.29e-19 87.8
Msa0453260 MtrunA17_Chr1g0194301 49.351 77 36 1 31 107 66 139 1.33e-19 88.2
Msa0453260 MtrunA17_Chr6g0487491 38.095 126 56 4 2 108 6 128 1.63e-19 87.8
Msa0453260 MtrunA17_Chr1g0186061 47.727 88 43 1 19 106 41 125 1.99e-19 87.4
Msa0453260 MtrunA17_Chr2g0311221 56.522 69 27 1 31 99 47 112 2.33e-19 88.6
Msa0453260 MtrunA17_Chr1g0167661 51.351 74 33 1 31 104 45 115 2.55e-19 87.0
Msa0453260 MtrunA17_Chr1g0187761 50.649 77 35 1 31 107 45 118 2.76e-19 87.0
Msa0453260 MtrunA17_Chr4g0072751 49.412 85 40 1 15 99 30 111 3.31e-19 88.2
Msa0453260 MtrunA17_Chr6g0453211 55.072 69 28 1 31 99 45 110 3.38e-19 87.8
Msa0453260 MtrunA17_Chr3g0092401 49.351 77 36 1 31 107 46 119 4.66e-19 87.4
Msa0453260 MtrunA17_Chr7g0254411 52.703 74 32 1 31 104 45 115 6.16e-19 87.4
Msa0453260 MtrunA17_Chr4g0044421 51.351 74 33 1 31 104 45 115 9.67e-19 84.0
Msa0453260 MtrunA17_Chr6g0470971 50.000 78 36 1 28 105 44 118 1.39e-18 85.5
Msa0453260 MtrunA17_Chr7g0275911 50.685 73 33 1 29 101 43 112 1.43e-18 84.7
Msa0453260 MtrunA17_Chr5g0440781 47.059 85 41 2 31 114 45 126 1.46e-18 83.2
Msa0453260 MtrunA17_Chr5g0417821 51.899 79 34 2 32 109 41 116 2.01e-18 85.1
Msa0453260 MtrunA17_Chr5g0440761 47.059 85 41 2 31 114 45 126 2.05e-18 84.7
Msa0453260 MtrunA17_Chr5g0441141 47.059 85 41 2 31 114 45 126 2.24e-18 84.7
Msa0453260 MtrunA17_Chr1g0168661 52.703 74 32 1 31 104 54 124 2.26e-18 84.3
Msa0453260 MtrunA17_Chr7g0240821 38.393 112 62 2 28 139 31 135 3.00e-18 83.2
Msa0453260 MtrunA17_Chr1g0194291 48.052 77 37 1 31 107 54 127 3.17e-18 84.0
Msa0453260 MtrunA17_Chr6g0452271 34.375 160 82 5 29 188 43 179 4.62e-18 84.7
Msa0453260 MtrunA17_Chr3g0121241 50.685 73 33 1 29 101 73 142 5.19e-18 84.0
Msa0453260 MtrunA17_Chr5g0441131 43.478 92 48 2 24 114 35 123 1.64e-17 80.1
Msa0453260 MtrunA17_Chr8g0343831 50.704 71 32 1 31 101 41 108 2.84e-17 81.3
Msa0453260 MtrunA17_Chr4g0068061 51.389 72 32 1 31 102 45 113 3.07e-17 82.4
Msa0453260 MtrunA17_Chr1g0194951 52.113 71 31 1 31 101 45 112 2.18e-16 80.1
Msa0453260 MtrunA17_Chr6g0454921 47.887 71 34 1 34 104 48 115 5.45e-16 76.3
Msa0453260 MtrunA17_Chr4g0008551 43.956 91 42 3 28 117 64 146 6.08e-16 78.6
Msa0453260 MtrunA17_Chr4g0053431 46.429 84 40 2 34 117 38 116 6.77e-16 77.4
Msa0453260 MtrunA17_Chr8g0360111 47.945 73 35 1 29 101 56 125 1.18e-15 76.6
Msa0453260 MtrunA17_Chr5g0434901 45.070 71 36 1 32 102 7 74 1.98e-15 72.4
Msa0453260 MtrunA17_Chr5g0429661 47.297 74 33 2 34 107 155 222 3.08e-15 76.6
Msa0453260 MtrunA17_Chr4g0058991 45.946 74 34 2 34 107 242 309 3.57e-15 77.0
Msa0453260 MtrunA17_Chr5g0434831 42.105 76 41 1 29 104 38 110 8.32e-15 72.4
Msa0453260 MtrunA17_Chr5g0434931 40.789 76 42 1 29 104 66 138 8.38e-15 74.3
Msa0453260 MtrunA17_Chr5g0401731 43.023 86 44 2 34 119 48 128 9.31e-15 74.7
Msa0453260 MtrunA17_Chr7g0220341 46.479 71 35 1 31 101 60 127 9.91e-15 73.9
Msa0453260 MtrunA17_Chr7g0229101 45.833 72 36 1 31 102 5 73 1.12e-14 72.8
Msa0453260 MtrunA17_Chr2g0293911 44.944 89 46 1 19 107 45 130 1.40e-14 74.3
Msa0453260 MtrunA17_Chr3g0117511 41.573 89 42 3 34 122 216 294 2.30e-14 74.7
Msa0453260 MtrunA17_Chr4g0068921 49.351 77 36 1 31 107 57 130 2.65e-14 71.2
Msa0453260 MtrunA17_Chr5g0434911 40.789 76 42 1 29 104 52 124 3.85e-14 72.4
Msa0453260 MtrunA17_Chr7g0229131 39.130 92 49 2 31 122 5 89 6.22e-14 69.7
Msa0453260 MtrunA17_Chr3g0133601 45.070 71 36 1 34 104 70 137 9.15e-14 70.5
Msa0453260 MtrunA17_Chr5g0434841 40.789 76 42 1 29 104 51 123 1.15e-13 71.6
Msa0453260 MtrunA17_Chr7g0269831 54.930 71 29 1 31 101 45 112 1.56e-13 71.6
Msa0453260 MtrunA17_Chr7g0228401 45.205 73 36 2 28 99 305 374 2.42e-13 71.6
Msa0453260 MtrunA17_Chr7g0228991 44.286 70 36 1 32 101 63 129 3.23e-13 69.7
Msa0453260 MtrunA17_Chr3g0093811 41.558 77 42 1 31 107 15 88 3.78e-13 69.3
Msa0453260 MtrunA17_Chr1g0177901 32.278 158 79 5 34 175 27 172 4.22e-13 68.2
Msa0453260 MtrunA17_Chr7g0228531 43.243 74 35 2 34 107 253 319 9.29e-13 69.7
Msa0453260 MtrunA17_Chr7g0238631 45.070 71 36 1 34 104 146 213 1.52e-12 69.3
Msa0453260 MtrunA17_Chr4g0042501 41.892 74 40 1 34 107 138 208 1.60e-12 68.9
Msa0453260 MtrunA17_Chr1g0157731 42.254 71 38 1 34 104 124 191 2.28e-12 68.9
Msa0453260 MtrunA17_Chr3g0139671 40.845 71 39 1 34 104 118 185 2.35e-12 68.9
Msa0453260 MtrunA17_Chr7g0233061 42.424 66 35 1 34 99 211 273 3.08e-12 67.4
Msa0453260 MtrunA17_Chr6g0460661 42.857 77 40 2 34 110 49 121 3.28e-12 64.3
Msa0453260 MtrunA17_Chr5g0417621 32.374 139 76 3 34 157 167 302 3.38e-12 67.8
Msa0453260 MtrunA17_Chr7g0238651 38.158 76 44 1 32 107 41 113 4.23e-12 67.0
Msa0453260 MtrunA17_Chr5g0437321 46.970 66 32 1 34 99 52 114 4.90e-12 66.2
Msa0453260 MtrunA17_Chr6g0453751 57.407 54 19 2 31 83 61 111 5.33e-12 63.2
Msa0453260 MtrunA17_Chr5g0395221 52.542 59 25 1 19 77 33 88 7.11e-12 61.2
Msa0453260 MtrunA17_Chr8g0342461 56.250 48 18 1 31 78 46 90 7.70e-12 62.8
Msa0453260 MtrunA17_Chr8g0342471 56.250 48 18 1 31 78 46 90 8.65e-12 62.8
Msa0453260 MtrunA17_Chr4g0042611 55.102 49 19 1 29 77 43 88 1.05e-11 60.8
Msa0453260 MtrunA17_Chr8g0342511 55.172 58 22 2 20 76 33 87 1.33e-11 60.8
Msa0453260 MtrunA17_Chr2g0323321 45.455 55 27 1 31 85 44 95 2.99e-11 60.5
Msa0453260 MtrunA17_Chr8g0342531 53.333 60 24 2 20 78 33 89 3.61e-11 61.6
Msa0453260 MtrunA17_Chr5g0397841 44.615 65 33 1 34 98 143 204 5.18e-11 64.3
Msa0453260 MtrunA17_Chr6g0480581 36.250 80 48 1 34 113 37 113 6.73e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0453260 AT4G26930.1 50.000 130 57 2 19 143 40 166 2.10e-34 132
Msa0453260 AT5G06100.1 65.979 97 30 1 19 115 53 146 5.20e-34 132
Msa0453260 AT5G06100.5 65.979 97 30 1 19 115 53 146 2.08e-33 131
Msa0453260 AT5G06100.2 65.979 97 30 1 19 115 53 146 2.08e-33 131
Msa0453260 AT5G06100.3 65.979 97 30 1 19 115 53 146 2.08e-33 131
Msa0453260 AT5G06100.4 65.979 97 30 1 19 115 53 146 2.08e-33 131
Msa0453260 AT3G11440.2 64.948 97 31 1 19 115 62 155 2.13e-33 130
Msa0453260 AT3G11440.3 64.948 97 31 1 19 115 62 155 7.36e-33 130
Msa0453260 AT3G11440.4 64.948 97 31 1 19 115 62 155 7.36e-33 130
Msa0453260 AT3G11440.1 64.948 97 31 1 19 115 62 155 7.36e-33 130
Msa0453260 AT5G55020.1 62.626 99 32 2 14 112 44 137 7.57e-33 130
Msa0453260 AT2G32460.2 61.856 97 34 1 19 115 27 120 2.97e-32 127
Msa0453260 AT2G32460.1 61.856 97 34 1 19 115 39 132 3.50e-32 127
Msa0453260 AT2G26960.1 58.763 97 37 1 19 115 41 134 2.36e-30 121
Msa0453260 AT5G26660.2 49.038 104 35 3 31 133 14 100 6.69e-26 107
Msa0453260 AT5G26660.1 47.414 116 42 4 20 133 33 131 1.15e-25 107
Msa0453260 AT5G07700.1 39.877 163 70 5 19 177 33 171 2.37e-25 105
Msa0453260 AT5G07700.2 39.877 163 70 5 19 177 33 171 2.37e-25 105
Msa0453260 AT1G09540.1 57.303 89 34 2 20 107 33 118 1.61e-24 104
Msa0453260 AT4G22680.1 59.459 74 27 1 31 104 45 115 3.23e-24 101
Msa0453260 AT5G07690.1 55.952 84 34 1 19 102 33 113 5.00e-24 102
Msa0453260 AT5G60890.1 48.696 115 52 3 19 132 33 141 6.06e-24 101
Msa0453260 AT1G57560.2 56.977 86 33 2 20 104 33 115 1.05e-23 100
Msa0453260 AT1G57560.1 56.977 86 33 2 20 104 33 115 1.14e-23 100
Msa0453260 AT5G61420.2 53.261 92 39 2 19 109 33 121 1.37e-23 101
Msa0453260 AT4G01680.3 54.545 88 36 2 20 106 33 117 1.53e-23 99.0
Msa0453260 AT1G63910.1 53.933 89 37 2 20 107 33 118 2.36e-23 100
Msa0453260 AT4G01680.1 54.545 88 36 2 20 106 33 117 2.37e-23 100
Msa0453260 AT5G62320.1 59.722 72 26 1 31 102 53 121 2.41e-23 98.6
Msa0453260 AT5G12870.1 51.685 89 39 2 20 107 39 124 2.81e-23 99.0
Msa0453260 AT4G05100.1 58.108 74 28 1 31 104 46 116 6.48e-23 99.0
Msa0453260 AT1G18570.1 55.814 86 35 1 19 104 34 116 6.56e-23 99.4
Msa0453260 AT4G01680.2 57.895 76 29 1 31 106 57 129 6.99e-23 99.4
Msa0453260 AT5G65230.1 57.143 77 30 1 31 107 45 118 1.09e-22 98.2
Msa0453260 AT4G28110.1 56.757 74 29 1 31 104 45 115 1.15e-22 97.4
Msa0453260 AT3G49690.1 51.111 90 41 1 15 104 30 116 1.74e-22 97.4
Msa0453260 AT5G59780.2 44.037 109 43 3 15 123 11 101 1.81e-22 95.1
Msa0453260 AT3G61250.1 56.757 74 29 1 31 104 45 115 1.86e-22 97.1
Msa0453260 AT4G12350.1 56.757 74 29 1 31 104 45 115 2.03e-22 96.7
Msa0453260 AT3G13890.2 52.326 86 37 2 20 104 33 115 2.15e-22 98.2
Msa0453260 AT3G60460.1 59.155 71 27 1 32 102 45 113 2.17e-22 97.1
Msa0453260 AT5G23000.1 50.000 90 42 1 15 104 30 116 3.06e-22 97.1
Msa0453260 AT2G16720.1 59.722 72 26 1 31 102 45 113 3.27e-22 95.9
Msa0453260 AT3G02940.2 54.430 79 33 1 29 107 43 118 3.38e-22 96.7
Msa0453260 AT5G54230.1 56.757 74 29 1 31 104 45 115 3.66e-22 96.7
Msa0453260 AT4G21440.1 55.405 74 30 1 31 104 45 115 3.80e-22 97.1
Msa0453260 AT5G16770.4 53.165 79 34 1 29 107 43 118 4.66e-22 96.7
Msa0453260 AT5G16770.3 53.165 79 34 1 29 107 43 118 4.66e-22 96.7
Msa0453260 AT3G02940.1 54.430 79 33 1 29 107 43 118 5.24e-22 96.3
Msa0453260 AT3G02940.3 54.430 79 33 1 29 107 43 118 5.24e-22 96.3
Msa0453260 AT5G65790.1 50.000 90 42 1 15 104 30 116 6.54e-22 97.1
Msa0453260 AT1G66230.1 54.545 77 32 1 31 107 45 118 6.74e-22 95.1
Msa0453260 AT5G16770.1 53.165 79 34 1 29 107 43 118 6.79e-22 96.3
Msa0453260 AT5G16770.2 53.165 79 34 1 29 107 43 118 6.79e-22 96.3
Msa0453260 AT1G35515.1 61.111 72 25 1 31 102 45 113 6.91e-22 93.6
Msa0453260 AT3G46130.4 43.119 109 44 3 15 123 11 101 7.45e-22 94.0
Msa0453260 AT5G57620.1 49.425 87 41 1 18 104 33 116 9.98e-22 95.9
Msa0453260 AT1G22640.1 59.722 72 26 1 31 102 45 113 1.18e-21 94.0
Msa0453260 AT5G10280.1 54.545 77 32 1 31 107 45 118 1.41e-21 95.1
Msa0453260 AT1G79180.2 47.000 100 46 2 30 129 79 171 1.48e-21 95.1
Msa0453260 AT4G17785.1 55.844 77 31 1 31 107 46 119 1.51e-21 95.5
Msa0453260 AT3G12720.1 52.500 80 34 2 31 109 55 131 1.65e-21 94.7
Msa0453260 AT1G79180.1 47.475 99 45 2 31 129 47 138 1.85e-21 94.4
Msa0453260 AT4G17785.2 55.844 77 31 1 31 107 46 119 1.86e-21 95.1
Msa0453260 AT5G15310.4 50.000 86 40 1 19 104 33 115 2.40e-21 92.8
Msa0453260 AT1G16490.1 52.941 85 37 1 31 115 47 128 2.53e-21 93.6
Msa0453260 AT3G46130.3 46.237 93 39 2 31 123 10 91 3.67e-21 92.0
Msa0453260 AT4G34990.1 55.000 80 32 2 31 109 45 121 4.05e-21 92.8
Msa0453260 AT5G15310.1 53.947 76 32 1 29 104 43 115 4.66e-21 93.6
Msa0453260 AT4G38620.1 56.757 74 29 1 31 104 45 115 5.11e-21 92.8
Msa0453260 AT4G09460.1 56.944 72 28 1 31 102 45 113 5.65e-21 91.7
Msa0453260 AT5G15310.2 53.947 76 32 1 29 104 43 115 5.66e-21 93.2
Msa0453260 AT5G16600.1 54.545 77 32 1 31 107 45 118 5.95e-21 93.6
Msa0453260 AT3G13890.1 54.795 73 30 1 32 104 55 124 6.26e-21 94.0
Msa0453260 AT3G01140.2 53.947 76 32 1 29 104 43 115 7.35e-21 93.6
Msa0453260 AT5G59780.3 46.237 93 39 2 31 123 41 122 7.83e-21 91.3
Msa0453260 AT3G08500.1 51.136 88 39 2 20 106 51 135 8.61e-21 93.2
Msa0453260 AT1G74080.1 53.571 84 36 1 19 102 33 113 9.47e-21 92.8
Msa0453260 AT3G46130.1 46.237 93 39 2 31 123 42 123 1.07e-20 91.3
Msa0453260 AT3G01140.1 53.947 76 32 1 29 104 86 158 1.11e-20 93.6
Msa0453260 AT3G27810.2 49.351 77 36 1 31 107 4 77 1.70e-20 88.6
Msa0453260 AT1G34670.1 53.947 76 32 1 32 107 46 118 5.38e-20 91.3
Msa0453260 AT3G12820.1 55.405 74 30 1 31 104 47 117 6.17e-20 88.6
Msa0453260 AT1G56160.1 54.054 74 31 1 31 104 47 117 6.97e-20 89.7
Msa0453260 AT3G27810.1 30.500 200 103 6 19 216 41 206 7.22e-20 88.2
Msa0453260 AT3G47600.2 50.649 77 35 1 31 107 39 112 7.48e-20 90.1
Msa0453260 AT4G37780.1 52.703 74 32 1 31 104 46 116 7.72e-20 89.7
Msa0453260 AT5G14750.1 39.024 123 63 3 19 132 37 156 9.17e-20 87.4
Msa0453260 AT3G47600.1 50.649 77 35 1 31 107 45 118 1.17e-19 89.7
Msa0453260 AT2G26950.1 48.276 87 42 1 29 115 47 130 1.32e-19 90.1
Msa0453260 AT5G35550.2 52.000 75 33 1 30 104 49 120 1.42e-19 88.2
Msa0453260 AT5G62470.2 51.948 77 34 1 31 107 45 118 1.47e-19 89.7
Msa0453260 AT1G68320.1 48.052 77 37 1 31 107 52 125 1.47e-19 88.6
Msa0453260 AT5G56110.1 52.703 74 32 1 31 104 45 115 1.56e-19 89.4
Msa0453260 AT2G31180.1 40.476 126 69 3 31 153 45 167 1.66e-19 87.8
Msa0453260 AT3G12820.2 54.930 71 29 1 34 104 2 69 1.74e-19 86.3
Msa0453260 AT2G36890.1 46.667 90 45 1 15 104 30 116 2.49e-19 88.2
Msa0453260 AT2G36890.2 40.351 114 54 2 2 104 47 157 2.59e-19 89.0
Msa0453260 AT1G74650.1 52.703 74 32 1 31 104 45 115 2.69e-19 88.6
Msa0453260 AT3G30210.1 52.632 76 33 1 31 106 60 132 2.71e-19 87.8
Msa0453260 AT3G28470.1 53.521 71 30 1 29 99 43 110 2.80e-19 88.6
Msa0453260 AT3G28910.1 54.054 74 31 1 31 104 45 115 2.85e-19 88.6
Msa0453260 AT5G52600.1 45.652 92 44 2 19 107 33 121 2.89e-19 85.9
Msa0453260 AT5G40350.2 34.239 184 76 8 31 210 5 147 2.96e-19 85.1
Msa0453260 AT1G48000.1 39.286 112 62 2 19 130 53 158 3.31e-19 86.7
Msa0453260 AT5G14340.1 51.316 76 34 1 31 106 57 129 3.33e-19 87.4
Msa0453260 AT3G48920.1 48.810 84 39 2 20 102 39 119 3.78e-19 87.0
Msa0453260 AT3G01530.1 45.238 84 43 1 19 102 46 126 3.81e-19 85.9
Msa0453260 AT5G40350.1 33.163 196 86 8 19 210 38 192 4.96e-19 85.5
Msa0453260 AT3G53200.2 50.000 78 36 1 28 105 6 80 5.31e-19 85.1
Msa0453260 AT3G13540.1 48.780 82 38 2 29 109 54 132 5.45e-19 86.3
Msa0453260 AT3G27920.1 46.988 83 41 1 19 101 35 114 5.78e-19 85.9
Msa0453260 AT1G25340.1 46.753 77 38 1 31 107 51 124 6.67e-19 86.7
Msa0453260 AT3G23250.1 50.000 76 35 1 29 104 43 115 8.74e-19 86.3
Msa0453260 AT4G25560.1 49.351 77 36 1 28 104 40 113 1.22e-18 85.9
Msa0453260 AT1G08810.1 52.703 74 32 1 31 104 45 115 1.33e-18 85.9
Msa0453260 AT5G35550.1 51.351 74 33 1 31 104 47 117 1.41e-18 85.1
Msa0453260 AT3G53200.1 48.780 82 39 1 24 105 35 113 1.80e-18 84.7
Msa0453260 AT5G14750.3 39.815 108 53 3 34 132 18 122 2.09e-18 82.4
Msa0453260 AT5G40330.1 49.315 73 34 1 29 101 43 112 2.36e-18 84.0
Msa0453260 AT5G52260.1 56.757 74 29 1 31 104 45 115 2.38e-18 84.7
Msa0453260 AT5G62470.1 51.351 74 33 1 34 107 47 117 2.84e-18 85.9
Msa0453260 AT3G24310.1 46.591 88 44 1 19 106 39 123 3.84e-18 84.3
Msa0453260 AT4G13480.1 46.591 88 44 1 19 106 27 111 5.75e-18 83.6
Msa0453260 AT1G18710.1 37.903 124 57 4 21 141 33 139 8.36e-18 83.2
Msa0453260 AT1G06180.1 51.351 74 33 1 31 104 45 115 9.51e-18 82.8
Msa0453260 AT2G47190.1 46.053 76 38 1 31 106 53 125 1.24e-17 82.8
Msa0453260 AT2G47460.1 53.521 71 30 1 31 101 45 112 1.27e-17 84.3
Msa0453260 AT5G49330.1 52.055 73 32 1 29 101 43 112 1.88e-17 83.6
Msa0453260 AT1G74430.1 47.368 76 37 1 29 104 43 115 2.56e-17 82.0
Msa0453260 AT5G58850.1 40.196 102 52 3 34 132 138 233 2.75e-17 84.0
Msa0453260 AT1G25340.2 45.833 72 36 1 36 107 51 119 6.76e-17 80.9
Msa0453260 AT1G25340.3 45.833 72 36 1 36 107 51 119 1.14e-16 80.5
Msa0453260 AT3G62610.1 50.704 71 32 1 31 101 45 112 1.68e-16 80.5
Msa0453260 AT3G50060.1 38.053 113 61 3 33 140 38 146 7.32e-16 78.2
Msa0453260 AT5G11050.1 48.649 74 32 2 34 107 138 205 5.56e-15 76.6
Msa0453260 AT1G66370.1 42.169 83 45 1 19 101 29 108 5.59e-15 74.7
Msa0453260 AT1G66380.3 45.946 74 37 1 31 104 8 78 5.74e-15 70.9
Msa0453260 AT4G18770.1 47.297 74 33 2 34 107 250 317 7.49e-15 76.3
Msa0453260 AT2G25230.1 45.000 80 38 2 29 105 54 130 9.66e-15 73.9
Msa0453260 AT1G56650.1 37.037 108 65 1 19 126 29 133 1.95e-14 73.2
Msa0453260 AT3G09230.1 47.222 72 35 1 33 104 87 155 1.96e-14 74.7
Msa0453260 AT3G06490.1 49.351 77 36 1 31 107 52 125 2.75e-14 73.9
Msa0453260 AT1G66380.1 44.186 86 45 1 16 101 26 108 3.88e-14 69.7
Msa0453260 AT2G39880.1 49.296 71 33 1 34 104 83 150 4.07e-14 73.6
Msa0453260 AT4G37260.1 47.222 72 35 1 33 104 45 113 1.07e-13 72.0
Msa0453260 AT3G55730.1 41.837 98 50 3 28 124 82 173 1.12e-13 72.8
Msa0453260 AT1G22640.3 55.172 58 23 1 45 102 2 56 1.28e-13 69.7
Msa0453260 AT5G49620.1 48.684 76 36 1 32 107 60 132 2.78e-13 70.5
Msa0453260 AT3G27785.1 42.308 78 39 2 34 108 222 296 3.32e-13 71.2
Msa0453260 AT5G40360.1 46.154 65 32 1 34 98 191 252 3.81e-13 70.9
Msa0453260 AT5G67300.1 46.479 71 35 1 34 104 39 106 4.37e-13 70.1
Msa0453260 AT4G00540.2 44.595 74 38 1 34 107 139 209 5.83e-13 70.5
Msa0453260 AT1G66390.1 45.946 74 37 1 28 101 38 108 6.00e-13 68.9
Msa0453260 AT4G00540.1 44.595 74 38 1 34 107 137 207 9.51e-13 70.1
Msa0453260 AT2G23290.1 45.833 72 36 1 33 104 45 113 1.25e-12 68.6
Msa0453260 AT1G26780.1 36.957 92 55 1 34 125 131 219 1.47e-12 68.2
Msa0453260 AT3G09370.2 43.662 71 37 1 34 104 168 235 2.11e-12 68.9
Msa0453260 AT3G09370.1 43.662 71 37 1 34 104 163 230 2.15e-12 68.9
Msa0453260 AT1G26780.2 36.957 92 55 1 34 125 131 219 2.21e-12 68.6
Msa0453260 AT1G18960.1 39.286 84 43 3 22 104 32 108 2.57e-12 67.8
Msa0453260 AT3G09370.3 43.662 71 37 1 34 104 176 243 2.79e-12 68.9
Msa0453260 AT5G02320.1 43.662 71 37 1 34 104 160 227 2.95e-12 68.6
Msa0453260 AT5G02320.2 43.662 71 37 1 34 104 160 227 2.95e-12 68.6
Msa0453260 AT3G29020.2 44.595 74 38 1 34 107 100 170 3.63e-12 67.4
Msa0453260 AT4G32730.5 42.254 71 38 1 34 104 120 187 3.83e-12 68.9
Msa0453260 AT4G32730.4 42.254 71 38 1 34 104 120 187 3.83e-12 68.9
Msa0453260 AT4G32730.3 42.254 71 38 1 34 104 120 187 3.83e-12 68.9
Msa0453260 AT4G32730.2 42.254 71 38 1 34 104 120 187 3.83e-12 68.9
Msa0453260 AT5G02320.3 43.662 71 37 1 34 104 100 167 3.88e-12 68.2
Msa0453260 AT1G69560.1 40.541 74 41 1 34 107 140 210 3.90e-12 67.4
Msa0453260 AT4G32730.1 42.254 71 38 1 34 104 120 187 3.94e-12 68.6
Msa0453260 AT1G69560.2 40.541 74 41 1 34 107 156 226 3.94e-12 67.4
Msa0453260 AT5G17800.1 42.105 76 41 1 32 107 124 196 4.88e-12 67.0
Msa0453260 AT3G29020.1 44.595 74 38 1 34 107 98 168 5.09e-12 65.9
Msa0453260 AT5G11510.3 40.845 71 39 1 34 104 114 181 8.83e-12 67.8
Msa0453260 AT5G11510.1 40.845 71 39 1 34 104 114 181 8.83e-12 67.8
Msa0453260 AT5G11510.4 40.845 71 39 1 34 104 114 181 8.83e-12 67.8
Msa0453260 AT5G11510.2 40.845 71 39 1 34 104 114 181 9.32e-12 67.4
Msa0453260 AT5G11510.5 40.845 71 39 1 34 104 114 181 1.08e-11 67.4
Msa0453260 AT2G37630.1 38.889 72 41 1 28 99 34 102 1.69e-11 65.9
Msa0453260 AT5G14750.4 35.052 97 51 3 45 132 2 95 4.29e-11 61.2
Msa0453260 AT5G14750.2 35.052 97 51 3 45 132 2 95 4.29e-11 61.2
Msa0453260 AT4G33450.1 39.474 76 43 1 34 109 52 124 5.13e-11 63.2
Msa0453260 AT3G23250.2 45.000 60 30 1 45 104 2 58 6.76e-11 62.4

Find 88 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACAATTATAGTGGCTTTA+TGG 0.145848 3_3:-43285692 Msa0453260:CDS
AACAAGACCCTTCTTCAAAT+TGG 0.177561 3_3:+43287083 None:intergenic
AGAGAGGGTGGTGGTGGTGG+TGG 0.259494 3_3:-43287279 Msa0453260:CDS
TATTTCCTTGTCCATTCTTC+CGG 0.272635 3_3:+43286422 None:intergenic
TGATGATGCGAATTTGAAAA+AGG 0.273239 3_3:-43287250 Msa0453260:CDS
GTTGAACTTCGTGCTGAATT+TGG 0.275077 3_3:-43286843 Msa0453260:CDS
AACAATTATAGTGGCTTTAT+GGG 0.275721 3_3:-43285691 Msa0453260:CDS
GGGACTTGAAGGTTAAAGTT+TGG 0.289718 3_3:+43285985 None:intergenic
ATGGGCTCGAATGGCTGTTT+TGG 0.312739 3_3:-43286814 Msa0453260:intron
TTCACCTTTCTCCACACATT+TGG 0.320296 3_3:-43285803 Msa0453260:CDS
ATACTTTCATACTTATTTGT+TGG 0.339875 3_3:-43285860 Msa0453260:CDS
AGTGGTAGAGAGGGTGGTGG+TGG 0.340677 3_3:-43287285 Msa0453260:CDS
TTGAGGATAGTCTTGAATAT+TGG 0.345831 3_3:+43285767 None:intergenic
GGTAGAGAGGGTGGTGGTGG+TGG 0.351111 3_3:-43287282 Msa0453260:CDS
GTGCTGAATTTGGTAACAAA+TGG 0.359005 3_3:-43286833 Msa0453260:CDS
ATTTCCTTGTCCATTCTTCC+GGG 0.361858 3_3:+43286423 None:intergenic
GGAAAGAGGCAGTGGTAGAG+AGG 0.368844 3_3:-43287295 Msa0453260:CDS
GAAGGTGGTGATATTGATAT+TGG 0.378950 3_3:+43286223 None:intergenic
TGTTGGTGTGGTTGGTGTGT+TGG 0.390584 3_3:+43286323 None:intergenic
ACAAGACCCTTCTTCAAATT+GGG 0.392855 3_3:+43287084 None:intergenic
GTTGGTGTGGTTGGTGTGTT+GGG 0.396039 3_3:+43286324 None:intergenic
AATGATGAAAATGTGTTGTT+TGG 0.406346 3_3:-43287328 None:intergenic
ATCCTCAAAACAAGATGTTA+AGG 0.425049 3_3:-43285752 Msa0453260:CDS
CATCATTCATAAATTTGCTT+AGG 0.429079 3_3:+43284728 None:intergenic
GAGAGGTTAGAGAAGGATCA+TGG 0.430789 3_3:+43285932 None:intergenic
AGAGGCAGTGGTAGAGAGGG+TGG 0.432032 3_3:-43287291 Msa0453260:CDS
GTGTTGTTTGGTTGGTATGA+TGG 0.439105 3_3:-43287316 Msa0453260:CDS
GTTGTAGTTGTTGCCTATGT+TGG 0.439607 3_3:+43286148 None:intergenic
TTTAAGACCCAATTTGAAGA+AGG 0.440557 3_3:-43287091 Msa0453260:CDS
AGTCTTGAATATTGGTTTGA+AGG 0.441169 3_3:+43285775 None:intergenic
ATCGTTGTGGGAAGAGTTGT+AGG 0.444303 3_3:-43287131 Msa0453260:CDS
ATGAAAATGTGTTGTTTGGT+TGG 0.448376 3_3:-43287324 None:intergenic
CCACGATGCAAAGTCAAGAT+TGG 0.453651 3_3:-43284672 Msa0453260:CDS
GGAAGAGTTGTAGGCTCGGA+TGG 0.454525 3_3:-43287122 Msa0453260:CDS
TATTCTAACATTGTGATGGT+TGG 0.472815 3_3:-43284607 Msa0453260:CDS
AGAGGAGAATGAAGATGAGT+TGG 0.472941 3_3:+43286183 None:intergenic
TGCTGAATTTGGTAACAAAT+GGG 0.473153 3_3:-43286832 Msa0453260:CDS
GAAAGGTGAAGACGAGGAAG+AGG 0.474366 3_3:+43285816 None:intergenic
TTGTCACAGAAGGGACTTGA+AGG 0.482543 3_3:+43285974 None:intergenic
GAAGGTGTAGAAGATGAAAA+TGG 0.483960 3_3:+43286084 None:intergenic
TCACCATGTGTCACACCGAC+AGG 0.490593 3_3:-43286294 Msa0453260:CDS
TGACTTTGCATCGTGGAAGA+AGG 0.491634 3_3:+43284679 None:intergenic
GAAAATGTTGTTGGTGTGGT+TGG 0.491935 3_3:+43286315 None:intergenic
ACAAGGAAATAAATAACTAC+TGG 0.491936 3_3:-43286410 Msa0453260:CDS
TCTCTTCACCACTCCAACAT+AGG 0.498003 3_3:-43286161 Msa0453260:CDS
GGTGTAGTTACCCGGAAGAA+TGG 0.514371 3_3:-43286433 Msa0453260:intron
GAAAGAGGCAGTGGTAGAGA+GGG 0.519301 3_3:-43287294 Msa0453260:CDS
TTAAGACCCAATTTGAAGAA+GGG 0.521082 3_3:-43287090 Msa0453260:CDS
ATGCAGGTTTGAATCGTTGT+GGG 0.525381 3_3:-43287143 Msa0453260:intron
AGCTCCAAATGTGTGGAGAA+AGG 0.532039 3_3:+43285799 None:intergenic
GAAGCTCAAACACTAGCGTC+TGG 0.541227 3_3:-43285655 Msa0453260:intron
TGGTAACAAATGGGCTCGAA+TGG 0.542882 3_3:-43286823 Msa0453260:CDS
ATTTGTTGGAATCCGATCGA+AGG 0.559290 3_3:-43285846 Msa0453260:CDS
GGTATGATGGAAAGAGGCAG+TGG 0.560894 3_3:-43287303 Msa0453260:CDS
GGCAGTGGTAGAGAGGGTGG+TGG 0.565561 3_3:-43287288 Msa0453260:CDS
TTTGTTGGAATCCGATCGAA+GGG 0.566657 3_3:-43285845 Msa0453260:CDS
TGTGGGAAGAGTTGTAGGCT+CGG 0.572799 3_3:-43287126 Msa0453260:CDS
AATGCAGGTTTGAATCGTTG+TGG 0.573881 3_3:-43287144 Msa0453260:intron
AATGTTAGAATATTGAACAT+TGG 0.576928 3_3:+43284618 None:intergenic
ACACATGGTGAAAATGTTGT+TGG 0.579250 3_3:+43286306 None:intergenic
GGTTAAAGTTTGGAGTCGAA+TGG 0.580895 3_3:+43285995 None:intergenic
TTGTAAGAGTTTGTTCCTGT+CGG 0.583079 3_3:+43286279 None:intergenic
ATCAAAGATCGTCGAAGACA+AGG 0.586856 3_3:-43286378 Msa0453260:CDS
GTTCCTGTCGGTGTGACACA+TGG 0.587577 3_3:+43286291 None:intergenic
TATGTTGTGGTGTAGTTACC+CGG 0.589418 3_3:-43286441 Msa0453260:intron
AGAAGGATCATGGAGTGAAG+AGG 0.599823 3_3:+43285942 None:intergenic
AAAGTGAAGGAGAGTGGTGA+AGG 0.600748 3_3:+43286066 None:intergenic
TCAATATTCTAACATTGTGA+TGG 0.603769 3_3:-43284611 Msa0453260:CDS
TTGGTTGGTATGATGGAAAG+AGG 0.604544 3_3:-43287309 Msa0453260:CDS
AGAGGACAAAACCCTTCGAT+CGG 0.612157 3_3:+43285834 None:intergenic
GAAGAGTTGTAGGCTCGGAT+GGG 0.612851 3_3:-43287121 Msa0453260:CDS
AGTTGTTGCCTATGTTGGAG+TGG 0.614474 3_3:+43286153 None:intergenic
TCATGATGAGAGGTTAGAGA+AGG 0.618046 3_3:+43285925 None:intergenic
TGTTGGAGTGGTGAAGAGAG+AGG 0.619324 3_3:+43286165 None:intergenic
TGGTGAAAATGTTGTTGGTG+TGG 0.621929 3_3:+43286311 None:intergenic
TGTGGAGAAAGGTGAAGACG+AGG 0.623796 3_3:+43285810 None:intergenic
CTTTGAAAAGTGAAGGAGAG+TGG 0.625087 3_3:+43286060 None:intergenic
TAAATAACTACTGGAACACA+AGG 0.632575 3_3:-43286401 Msa0453260:CDS
GTGTTTGAGATAAAGTGTGA+AGG 0.634586 3_3:+43286205 None:intergenic
TCGAAAACTATCATGATGAG+AGG 0.637476 3_3:+43285915 None:intergenic
TGAAGGTAGCTCCAAATGTG+TGG 0.640667 3_3:+43285792 None:intergenic
TGGTAGCGTTTGAAGCGAAG+AGG 0.658487 3_3:+43286015 None:intergenic
CCAATCTTGACTTTGCATCG+TGG 0.659363 3_3:+43284672 None:intergenic
TTTGAGATAAAGTGTGAAGG+TGG 0.662401 3_3:+43286208 None:intergenic
AGGCGTAGATAAGAGTGATG+TGG 0.669025 3_3:+43286035 None:intergenic
AAAGTGTCTACGAATGTGTG+AGG 0.671866 3_3:+43286114 None:intergenic
TGTGGCTCTTTGAAAAGTGA+AGG 0.673534 3_3:+43286053 None:intergenic
GTTACCCGGAAGAATGGACA+AGG 0.703936 3_3:-43286427 Msa0453260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTTATTTTTCACATTT+TGG - chr3_3:43286430-43286449 Msa0453260:intron 10.0%
!! TATTATTATATACATATAAC+TGG - chr3_3:43287104-43287123 Msa0453260:CDS 10.0%
!!! TATAAGTTTTGAAGTTTTTA+AGG + chr3_3:43284921-43284940 None:intergenic 15.0%
!! AAAGAACTTTAATTAAAGAT+TGG - chr3_3:43285196-43285215 Msa0453260:intron 15.0%
!!! TGTTATATTTTATATTGGTT+TGG - chr3_3:43286401-43286420 Msa0453260:CDS 15.0%
!! TATATTTATACTTGTTCTTA+AGG - chr3_3:43286493-43286512 Msa0453260:intron 15.0%
!! CAAATCAAAAATTCATTTAT+GGG + chr3_3:43286816-43286835 None:intergenic 15.0%
!! TCAAATCAAAAATTCATTTA+TGG + chr3_3:43286817-43286836 None:intergenic 15.0%
!! TAAATGTAGAAACTTAATCT+TGG - chr3_3:43284878-43284897 Msa0453260:intron 20.0%
!! AACTTTAATTAAAGATTGGA+TGG - chr3_3:43285200-43285219 Msa0453260:intron 20.0%
!! ATACTTTCATACTTATTTGT+TGG - chr3_3:43286046-43286065 Msa0453260:CDS 20.0%
!!! TATTTTCAGAACAATTATAG+TGG - chr3_3:43286206-43286225 Msa0453260:CDS 20.0%
!! GTAATTATATGTATAGAAGT+TGG + chr3_3:43287061-43287080 None:intergenic 20.0%
!! AATGTTAGAATATTGAACAT+TGG + chr3_3:43287291-43287310 None:intergenic 20.0%
! AATAATGTTCAAAGAAATGC+AGG - chr3_3:43284747-43284766 Msa0453260:CDS 25.0%
!!! TAACATTTTCCTTTGAAGAA+AGG - chr3_3:43285009-43285028 Msa0453260:intron 25.0%
! TTTAGATTAGGTTTGACTAA+CGG + chr3_3:43285152-43285171 None:intergenic 25.0%
!! TCAAACCTAATCTAAAATGT+TGG - chr3_3:43285156-43285175 Msa0453260:intron 25.0%
!! TTATGCCAACATTTTAGATT+AGG + chr3_3:43285164-43285183 None:intergenic 25.0%
! TTAATGATCGTAGTAAACTT+AGG - chr3_3:43285303-43285322 Msa0453260:intron 25.0%
! ACATTAATTGTTGTATGTTG+TGG - chr3_3:43285452-43285471 Msa0453260:intron 25.0%
! ACAAGGAAATAAATAACTAC+TGG - chr3_3:43285496-43285515 Msa0453260:intron 25.0%
!!! AACAATTTTTTGTCACAGAA+GGG + chr3_3:43285944-43285963 None:intergenic 25.0%
!!! AACAATTATAGTGGCTTTAT+GGG - chr3_3:43286215-43286234 Msa0453260:CDS 25.0%
! AGTTAATTGAGCTTAAATGA+AGG - chr3_3:43286293-43286312 Msa0453260:CDS 25.0%
! AGTTATGTGAAAAATCATCA+AGG + chr3_3:43286346-43286365 None:intergenic 25.0%
! TTTCACATAACTCTGTTTAT+TGG - chr3_3:43286354-43286373 Msa0453260:CDS 25.0%
!!! GTTCTTAAGGTTTTAATTTG+TGG - chr3_3:43286506-43286525 Msa0453260:intron 25.0%
!!! TTAAGGTTTTAATTTGTGGT+CGG - chr3_3:43286510-43286529 Msa0453260:intron 25.0%
! TTACACTAATAAACAACTCA+GGG - chr3_3:43286701-43286720 Msa0453260:intron 25.0%
!! TTTTTGCTTCTTATATTCCA+AGG - chr3_3:43286756-43286775 Msa0453260:intron 25.0%
! TTCATTTGATTGATCTATGT+AGG - chr3_3:43287128-43287147 Msa0453260:CDS 25.0%
!! CATCATTCATAAATTTGCTT+AGG + chr3_3:43287181-43287200 None:intergenic 25.0%
! TCAATATTCTAACATTGTGA+TGG - chr3_3:43287295-43287314 Msa0453260:CDS 25.0%
! TGATGATGCGAATTTGAAAA+AGG - chr3_3:43284656-43284675 Msa0453260:CDS 30.0%
GATGATGCGAATTTGAAAAA+GGG - chr3_3:43284657-43284676 Msa0453260:CDS 30.0%
CTAGATTATGTGACAAAACA+TGG - chr3_3:43284711-43284730 Msa0453260:CDS 30.0%
! TTTAAGACCCAATTTGAAGA+AGG - chr3_3:43284815-43284834 Msa0453260:intron 30.0%
TTAAGACCCAATTTGAAGAA+GGG - chr3_3:43284816-43284835 Msa0453260:intron 30.0%
TTTCTTATCTTGTACCCTTA+GGG + chr3_3:43284857-43284876 None:intergenic 30.0%
ATTTCTTATCTTGTACCCTT+AGG + chr3_3:43284858-43284877 None:intergenic 30.0%
! TGCTGAATTTGGTAACAAAT+GGG - chr3_3:43285074-43285093 Msa0453260:intron 30.0%
!! ATTATCCATTCAGTCACTTT+TGG - chr3_3:43285333-43285352 Msa0453260:intron 30.0%
! AGATGCATTAGTCTATATGA+AGG + chr3_3:43285396-43285415 None:intergenic 30.0%
TAAATAACTACTGGAACACA+AGG - chr3_3:43285505-43285524 Msa0453260:intron 30.0%
!!! GAACAATTTTTTGTCACAGA+AGG + chr3_3:43285945-43285964 None:intergenic 30.0%
!! AGTCTTGAATATTGGTTTGA+AGG + chr3_3:43286134-43286153 None:intergenic 30.0%
! TTGAGGATAGTCTTGAATAT+TGG + chr3_3:43286142-43286161 None:intergenic 30.0%
ATCCTCAAAACAAGATGTTA+AGG - chr3_3:43286154-43286173 Msa0453260:CDS 30.0%
!!! AACCTTAACATCTTGTTTTG+AGG + chr3_3:43286159-43286178 None:intergenic 30.0%
! GAACAATTATAGTGGCTTTA+TGG - chr3_3:43286214-43286233 Msa0453260:CDS 30.0%
! CTTTATGGGAGATCTTTTAA+TGG - chr3_3:43286229-43286248 Msa0453260:CDS 30.0%
!! GTTTATTGGTCTTGTAATTC+TGG - chr3_3:43286368-43286387 Msa0453260:CDS 30.0%
!!! CATTTTGGTTGCATTTTGTT+TGG - chr3_3:43286445-43286464 Msa0453260:intron 30.0%
CTTACACTAATAAACAACTC+AGG - chr3_3:43286700-43286719 Msa0453260:intron 30.0%
TACACTAATAAACAACTCAG+GGG - chr3_3:43286702-43286721 Msa0453260:intron 30.0%
TATTCTAACATTGTGATGGT+TGG - chr3_3:43287299-43287318 Msa0453260:CDS 30.0%
TATGTGACAAAACATGGTGA+AGG - chr3_3:43284717-43284736 Msa0453260:CDS 35.0%
ATGTGACAAAACATGGTGAA+GGG - chr3_3:43284718-43284737 Msa0453260:CDS 35.0%
ACAAGACCCTTCTTCAAATT+GGG + chr3_3:43284825-43284844 None:intergenic 35.0%
AACAAGACCCTTCTTCAAAT+TGG + chr3_3:43284826-43284845 None:intergenic 35.0%
!! AATGTTAACTTGTGCCCTTA+GGG + chr3_3:43284996-43285015 None:intergenic 35.0%
!! AAATGTTAACTTGTGCCCTT+AGG + chr3_3:43284997-43285016 None:intergenic 35.0%
GAAAATGCACCTTTCTTCAA+AGG + chr3_3:43285021-43285040 None:intergenic 35.0%
! GTGCTGAATTTGGTAACAAA+TGG - chr3_3:43285073-43285092 Msa0453260:intron 35.0%
AGTGACTGAATGGATAATTC+TGG + chr3_3:43285331-43285350 None:intergenic 35.0%
TTCAACCAAAAGTGACTGAA+TGG + chr3_3:43285341-43285360 None:intergenic 35.0%
TATTTCCTTGTCCATTCTTC+CGG + chr3_3:43285487-43285506 None:intergenic 35.0%
ACACATGGTGAAAATGTTGT+TGG + chr3_3:43285603-43285622 None:intergenic 35.0%
! TTGTAAGAGTTTGTTCCTGT+CGG + chr3_3:43285630-43285649 None:intergenic 35.0%
GAAGGTGGTGATATTGATAT+TGG + chr3_3:43285686-43285705 None:intergenic 35.0%
! TTTGAGATAAAGTGTGAAGG+TGG + chr3_3:43285701-43285720 None:intergenic 35.0%
! GTGTTTGAGATAAAGTGTGA+AGG + chr3_3:43285704-43285723 None:intergenic 35.0%
! GAAGGTGTAGAAGATGAAAA+TGG + chr3_3:43285825-43285844 None:intergenic 35.0%
TCGAAAACTATCATGATGAG+AGG + chr3_3:43285994-43286013 None:intergenic 35.0%
GGTAGATAAGCATTATTCCT+TGG + chr3_3:43286776-43286795 None:intergenic 35.0%
CTATGTAGGACAAAAAGCAA+AGG - chr3_3:43287142-43287161 Msa0453260:intron 35.0%
!! GTGTTGTTTGGTTGGTATGA+TGG - chr3_3:43284590-43284609 Msa0453260:CDS 40.0%
! TTGGTTGGTATGATGGAAAG+AGG - chr3_3:43284597-43284616 Msa0453260:CDS 40.0%
TCTAGCAAAATTGCATCCTC+TGG + chr3_3:43284696-43284715 None:intergenic 40.0%
CAAAACATGGTGAAGGGAAT+TGG - chr3_3:43284724-43284743 Msa0453260:CDS 40.0%
AATGCAGGTTTGAATCGTTG+TGG - chr3_3:43284762-43284781 Msa0453260:intron 40.0%
ATGCAGGTTTGAATCGTTGT+GGG - chr3_3:43284763-43284782 Msa0453260:intron 40.0%
! TCTTGTTTACTTGTGCCCTA+AGG - chr3_3:43284839-43284858 Msa0453260:intron 40.0%
CTTGTTTACTTGTGCCCTAA+GGG - chr3_3:43284840-43284859 Msa0453260:intron 40.0%
ATCCTTATCTTGTGCCCTAA+GGG - chr3_3:43284979-43284998 Msa0453260:intron 40.0%
GTTGAACTTCGTGCTGAATT+TGG - chr3_3:43285063-43285082 Msa0453260:intron 40.0%
TATGTTGTGGTGTAGTTACC+CGG - chr3_3:43285465-43285484 Msa0453260:intron 40.0%
ATTTCCTTGTCCATTCTTCC+GGG + chr3_3:43285486-43285505 None:intergenic 40.0%
ATCAAAGATCGTCGAAGACA+AGG - chr3_3:43285528-43285547 Msa0453260:intron 40.0%
GAAAATGTTGTTGGTGTGGT+TGG + chr3_3:43285594-43285613 None:intergenic 40.0%
TGGTGAAAATGTTGTTGGTG+TGG + chr3_3:43285598-43285617 None:intergenic 40.0%
AGAGGAGAATGAAGATGAGT+TGG + chr3_3:43285726-43285745 None:intergenic 40.0%
GTTGTAGTTGTTGCCTATGT+TGG + chr3_3:43285761-43285780 None:intergenic 40.0%
! AAAGTGTCTACGAATGTGTG+AGG + chr3_3:43285795-43285814 None:intergenic 40.0%
! CTTTGAAAAGTGAAGGAGAG+TGG + chr3_3:43285849-43285868 None:intergenic 40.0%
! TGTGGCTCTTTGAAAAGTGA+AGG + chr3_3:43285856-43285875 None:intergenic 40.0%
! GGTTAAAGTTTGGAGTCGAA+TGG + chr3_3:43285914-43285933 None:intergenic 40.0%
GGGACTTGAAGGTTAAAGTT+TGG + chr3_3:43285924-43285943 None:intergenic 40.0%
TCATGATGAGAGGTTAGAGA+AGG + chr3_3:43285984-43286003 None:intergenic 40.0%
! ATTTGTTGGAATCCGATCGA+AGG - chr3_3:43286060-43286079 Msa0453260:CDS 40.0%
TTTGTTGGAATCCGATCGAA+GGG - chr3_3:43286061-43286080 Msa0453260:CDS 40.0%
TTCACCTTTCTCCACACATT+TGG - chr3_3:43286103-43286122 Msa0453260:CDS 40.0%
TGGGATCACACGACATATAA+AGG + chr3_3:43286797-43286816 None:intergenic 40.0%
ATCGTTGTGGGAAGAGTTGT+AGG - chr3_3:43284775-43284794 Msa0453260:intron 45.0%
GATCCTTATCTTGTGCCCTA+AGG - chr3_3:43284978-43284997 Msa0453260:intron 45.0%
! TGGTAACAAATGGGCTCGAA+TGG - chr3_3:43285083-43285102 Msa0453260:intron 45.0%
TCTCTTCACCACTCCAACAT+AGG - chr3_3:43285745-43285764 Msa0453260:CDS 45.0%
AGTTGTTGCCTATGTTGGAG+TGG + chr3_3:43285756-43285775 None:intergenic 45.0%
AAAGTGAAGGAGAGTGGTGA+AGG + chr3_3:43285843-43285862 None:intergenic 45.0%
AGGCGTAGATAAGAGTGATG+TGG + chr3_3:43285874-43285893 None:intergenic 45.0%
TTGTCACAGAAGGGACTTGA+AGG + chr3_3:43285935-43285954 None:intergenic 45.0%
AGAAGGATCATGGAGTGAAG+AGG + chr3_3:43285967-43285986 None:intergenic 45.0%
GAGAGGTTAGAGAAGGATCA+TGG + chr3_3:43285977-43285996 None:intergenic 45.0%
AGAGGACAAAACCCTTCGAT+CGG + chr3_3:43286075-43286094 None:intergenic 45.0%
AGCTCCAAATGTGTGGAGAA+AGG + chr3_3:43286110-43286129 None:intergenic 45.0%
TGAAGGTAGCTCCAAATGTG+TGG + chr3_3:43286117-43286136 None:intergenic 45.0%
TGACTTTGCATCGTGGAAGA+AGG + chr3_3:43287230-43287249 None:intergenic 45.0%
CCAATCTTGACTTTGCATCG+TGG + chr3_3:43287237-43287256 None:intergenic 45.0%
CCACGATGCAAAGTCAAGAT+TGG - chr3_3:43287234-43287253 Msa0453260:intron 45.0%
!!! AATAATGTTATATTTTATAT+TGG - chr3_3:43286396-43286415 Msa0453260:CDS 5.0%
!! AAAAAAAAAATTGTTTATAA+AGG - chr3_3:43286946-43286965 Msa0453260:intron 5.0%
!! AAAAAAAAATTGTTTATAAA+GGG - chr3_3:43286947-43286966 Msa0453260:intron 5.0%
! GGTATGATGGAAAGAGGCAG+TGG - chr3_3:43284603-43284622 Msa0453260:CDS 50.0%
GAAAGAGGCAGTGGTAGAGA+GGG - chr3_3:43284612-43284631 Msa0453260:CDS 50.0%
!! GCATCCTCTGGTGTTGTCTA+AGG + chr3_3:43284684-43284703 None:intergenic 50.0%
TGTGGGAAGAGTTGTAGGCT+CGG - chr3_3:43284780-43284799 Msa0453260:intron 50.0%
GAAGAGTTGTAGGCTCGGAT+GGG - chr3_3:43284785-43284804 Msa0453260:intron 50.0%
TGCCCTTAGGGCACAAGATA+AGG + chr3_3:43284984-43285003 None:intergenic 50.0%
! ATGGGCTCGAATGGCTGTTT+TGG - chr3_3:43285092-43285111 Msa0453260:intron 50.0%
GGTGTAGTTACCCGGAAGAA+TGG - chr3_3:43285473-43285492 Msa0453260:intron 50.0%
GTTACCCGGAAGAATGGACA+AGG - chr3_3:43285479-43285498 Msa0453260:intron 50.0%
! GTTGGTGTGGTTGGTGTGTT+GGG + chr3_3:43285585-43285604 None:intergenic 50.0%
! TGTTGGTGTGGTTGGTGTGT+TGG + chr3_3:43285586-43285605 None:intergenic 50.0%
TGTTGGAGTGGTGAAGAGAG+AGG + chr3_3:43285744-43285763 None:intergenic 50.0%
! TGGTAGCGTTTGAAGCGAAG+AGG + chr3_3:43285894-43285913 None:intergenic 50.0%
GAAAGGTGAAGACGAGGAAG+AGG + chr3_3:43286093-43286112 None:intergenic 50.0%
TGTGGAGAAAGGTGAAGACG+AGG + chr3_3:43286099-43286118 None:intergenic 50.0%
GAAGCTCAAACACTAGCGTC+TGG - chr3_3:43286251-43286270 Msa0453260:CDS 50.0%
GGAAAGAGGCAGTGGTAGAG+AGG - chr3_3:43284611-43284630 Msa0453260:CDS 55.0%
GGGTCCTTAGACAACACCAG+AGG - chr3_3:43284677-43284696 Msa0453260:CDS 55.0%
GGAAGAGTTGTAGGCTCGGA+TGG - chr3_3:43284784-43284803 Msa0453260:intron 55.0%
TCACCATGTGTCACACCGAC+AGG - chr3_3:43285612-43285631 Msa0453260:intron 55.0%
GTTCCTGTCGGTGTGACACA+TGG + chr3_3:43285618-43285637 None:intergenic 55.0%
AGAGGCAGTGGTAGAGAGGG+TGG - chr3_3:43284615-43284634 Msa0453260:CDS 60.0%
! AGTGGTAGAGAGGGTGGTGG+TGG - chr3_3:43284621-43284640 Msa0453260:CDS 60.0%
GGCAGTGGTAGAGAGGGTGG+TGG - chr3_3:43284618-43284637 Msa0453260:CDS 65.0%
!! GGTAGAGAGGGTGGTGGTGG+TGG - chr3_3:43284624-43284643 Msa0453260:CDS 65.0%
!! AGAGAGGGTGGTGGTGGTGG+TGG - chr3_3:43284627-43284646 Msa0453260:CDS 65.0%
!! GAGGGTGGTGGTGGTGGTGG+TGG - chr3_3:43284630-43284649 Msa0453260:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 43284588 43287340 43284588 ID=Msa0453260;Name=Msa0453260
chr3_3 mRNA 43284588 43287340 43284588 ID=Msa0453260-mRNA-1;Parent=Msa0453260;Name=Msa0453260-mRNA-1;_AED=0.10;_eAED=0.11;_QI=0|0|0|1|1|1|5|0|411
chr3_3 exon 43287250 43287340 43287250 ID=Msa0453260-mRNA-1:exon:7875;Parent=Msa0453260-mRNA-1
chr3_3 exon 43287086 43287159 43287086 ID=Msa0453260-mRNA-1:exon:7874;Parent=Msa0453260-mRNA-1
chr3_3 exon 43286815 43286901 43286815 ID=Msa0453260-mRNA-1:exon:7873;Parent=Msa0453260-mRNA-1
chr3_3 exon 43285656 43286448 43285656 ID=Msa0453260-mRNA-1:exon:7872;Parent=Msa0453260-mRNA-1
chr3_3 exon 43284588 43284778 43284588 ID=Msa0453260-mRNA-1:exon:7871;Parent=Msa0453260-mRNA-1
chr3_3 CDS 43287250 43287340 43287250 ID=Msa0453260-mRNA-1:cds;Parent=Msa0453260-mRNA-1
chr3_3 CDS 43287086 43287159 43287086 ID=Msa0453260-mRNA-1:cds;Parent=Msa0453260-mRNA-1
chr3_3 CDS 43286815 43286901 43286815 ID=Msa0453260-mRNA-1:cds;Parent=Msa0453260-mRNA-1
chr3_3 CDS 43285656 43286448 43285656 ID=Msa0453260-mRNA-1:cds;Parent=Msa0453260-mRNA-1
chr3_3 CDS 43284588 43284778 43284588 ID=Msa0453260-mRNA-1:cds;Parent=Msa0453260-mRNA-1
Gene Sequence

>Msa0453260

ATGTGTTGTTTGGTTGGTATGATGGAAAGAGGCAGTGGTAGAGAGGGTGGTGGTGGTGGTGGTGGTTGTGATGATGCGAATTTGAAAAAGGGTTTGAATCGTTGTGGGAAGAGTTGTAGGCTCGGATGGGCTAATCATTTAAGACCCAATTTGAAGAAGGGTCTTAAAGGTGCATTTTCTCATGAAGAAGAGAAACTCATTGTTGAACTTCGTGCTGAATTTGGTAACAAATGGGCTCGAATGGCTGTTTTGTTACCCGGAAGAATGGACAAGGAAATAAATAACTACTGGAACACAAGGATCAAAGATCGTCGAAGACAAGGTCTTCTTCTCTATTCTGACGAACACGATCGTCCCAACACACCAACCACACCAACAACATTTTCACCATGTGTCACACCGACAGGAACAAACTCTTACAACATTATAACAAAGTTTGAGTTTTTCAATCAAAACCAATATCAATATCACCACCTTCACACTTTATCTCAAACACCAACTCATCTTCATTCTCCTCTCTCTTCACCACTCCAACATAGGCAACAACTACAACATTCTAATTATCCTCACACATTCGTAGACACTTTATCTGCACCATTTTCATCTTCTACACCTTCACCACTCTCCTTCACTTTTCAAAGAGCCACATCACTCTTATCTACGCCTCTTCGCTTCAAACGCTACCATTCGACTCCAAACTTTAACCTTCAAGTCCCTTCTGTGACAAAAAATTGTTCCTCTTCACTCCATGATCCTTCTCTAACCTCTCATCATGATAGTTTTCGATTCTCAATTCAATACAACTCGAGTTTTTCTCAATACTTTCATACTTATTTGTTGGAATCCGATCGAAGGGTTTTGTCCTCTTCCTCGTCTTCACCTTTCTCCACACATTTGGAGCTACCTTCAAACCAATATTCAAGACTATCCTCAAAACAAGATGTTAAGGTTAATAATATTGAGTTCAATAAAACTAATTATTTTCAGAACAATTATAGTGGCTTTATGGGAGATCTTTTAATGGAAGCTCAAACACTAGCGTCTGGACAAAAAGCAAAGGAAGAAGCACAAGACCTAAGCAAATTTATGAATGATGATATGTCAACAATGCTAACTGTGATGCCTTCTTCCACGATGCAAAGTCAAGATTGGAACAACAACAACAATAATGCATCAGAAGTCACCAATGTTCAATATTCTAACATTGTGATGGTTGGACTTGATATCGAGCAATGA
Protein sequence

>Msa0453260

MCCLVGMMERGSGREGGGGGGGCDDANLKKGLNRCGKSCRLGWANHLRPNLKKGLKGAFSHEEEKLIVELRAEFGNKWARMAVLLPGRMDKEINNYWNTRIKDRRRQGLLLYSDEHDRPNTPTTPTTFSPCVTPTGTNSYNIITKFEFFNQNQYQYHHLHTLSQTPTHLHSPLSSPLQHRQQLQHSNYPHTFVDTLSAPFSSSTPSPLSFTFQRATSLLSTPLRFKRYHSTPNFNLQVPSVTKNCSSSLHDPSLTSHHDSFRFSIQYNSSFSQYFHTYLLESDRRVLSSSSSSPFSTHLELPSNQYSRLSSKQDVKVNNIEFNKTNYFQNNYSGFMGDLLMEAQTLASGQKAKEEAQDLSKFMNDDMSTMLTVMPSSTMQSQDWNNNNNNASEVTNVQYSNIVMVGLDIEQ*