Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0454220 | XP_039686078.1 | 73.913 | 138 | 36 | 0 | 51 | 188 | 70 | 207 | 1.33e-72 | 231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0454220 | sp|Q9SWG3|FAR1_ARATH | 37.584 | 149 | 88 | 2 | 54 | 197 | 91 | 239 | 3.42e-27 | 113 |
| Msa0454220 | sp|Q9SWG3|FAR1_ARATH | 60.345 | 58 | 23 | 0 | 191 | 248 | 462 | 519 | 3.25e-14 | 75.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0454220 | A0A2K3NBU0 | 72.993 | 137 | 37 | 0 | 54 | 190 | 77 | 213 | 1.13e-66 | 229 |
| Msa0454220 | A0A2K3NBU0 | 86.441 | 59 | 8 | 0 | 190 | 248 | 442 | 500 | 3.68e-24 | 112 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0454220 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0454220 | MtrunA17_Chr1g0207551 | 37.671 | 146 | 89 | 1 | 54 | 197 | 74 | 219 | 1.81e-25 | 105 |
| Msa0454220 | MtrunA17_Chr1g0207551 | 62.069 | 58 | 22 | 0 | 191 | 248 | 442 | 499 | 3.76e-16 | 78.2 |
| Msa0454220 | MtrunA17_Chr2g0329031 | 37.956 | 137 | 78 | 3 | 54 | 189 | 54 | 184 | 4.10e-21 | 92.4 |
| Msa0454220 | MtrunA17_Chr2g0329031 | 46.774 | 62 | 33 | 0 | 193 | 254 | 417 | 478 | 6.80e-16 | 77.0 |
| Msa0454220 | MtrunA17_Chr2g0296781 | 32.558 | 129 | 85 | 1 | 61 | 187 | 42 | 170 | 1.10e-18 | 85.5 |
| Msa0454220 | MtrunA17_Chr5g0448761 | 34.483 | 116 | 73 | 3 | 76 | 189 | 129 | 243 | 8.88e-17 | 79.7 |
| Msa0454220 | MtrunA17_Chr3g0080351 | 30.065 | 153 | 67 | 3 | 54 | 189 | 116 | 245 | 4.34e-16 | 77.8 |
| Msa0454220 | MtrunA17_Chr3g0080351 | 51.724 | 58 | 28 | 0 | 191 | 248 | 476 | 533 | 1.47e-11 | 64.3 |
| Msa0454220 | MtrunA17_Chr2g0287651 | 31.818 | 110 | 73 | 2 | 81 | 188 | 147 | 256 | 1.43e-15 | 76.3 |
| Msa0454220 | MtrunA17_Chr6g0451441 | 28.477 | 151 | 106 | 1 | 58 | 206 | 130 | 280 | 8.28e-14 | 70.9 |
| Msa0454220 | MtrunA17_Chr1g0202341 | 35.772 | 123 | 73 | 4 | 68 | 188 | 111 | 229 | 1.16e-13 | 70.5 |
| Msa0454220 | MtrunA17_Chr1g0203051 | 27.586 | 145 | 96 | 4 | 54 | 189 | 118 | 262 | 2.26e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0454220 | AT4G15090.1 | 37.584 | 149 | 88 | 2 | 54 | 197 | 91 | 239 | 3.48e-28 | 113 |
| Msa0454220 | AT4G15090.1 | 60.345 | 58 | 23 | 0 | 191 | 248 | 462 | 519 | 3.30e-15 | 75.5 |
| Msa0454220 | AT4G15090.5 | 37.584 | 149 | 88 | 2 | 54 | 197 | 91 | 239 | 3.48e-28 | 113 |
| Msa0454220 | AT4G15090.5 | 60.345 | 58 | 23 | 0 | 191 | 248 | 462 | 519 | 3.30e-15 | 75.5 |
| Msa0454220 | AT4G15090.3 | 37.584 | 149 | 88 | 2 | 54 | 197 | 91 | 239 | 3.48e-28 | 113 |
| Msa0454220 | AT4G15090.3 | 60.345 | 58 | 23 | 0 | 191 | 248 | 462 | 519 | 3.30e-15 | 75.5 |
| Msa0454220 | AT4G15090.2 | 37.584 | 149 | 88 | 2 | 54 | 197 | 91 | 239 | 3.48e-28 | 113 |
| Msa0454220 | AT4G15090.2 | 60.345 | 58 | 23 | 0 | 191 | 248 | 462 | 519 | 3.30e-15 | 75.5 |
| Msa0454220 | AT4G15090.4 | 37.584 | 149 | 88 | 2 | 54 | 197 | 91 | 239 | 3.48e-28 | 113 |
| Msa0454220 | AT4G15090.4 | 60.345 | 58 | 23 | 0 | 191 | 248 | 462 | 519 | 3.30e-15 | 75.5 |
| Msa0454220 | AT1G76320.3 | 37.956 | 137 | 79 | 3 | 54 | 189 | 37 | 168 | 6.00e-22 | 95.5 |
| Msa0454220 | AT1G76320.3 | 54.386 | 57 | 26 | 0 | 192 | 248 | 400 | 456 | 7.44e-16 | 77.4 |
| Msa0454220 | AT1G76320.2 | 37.956 | 137 | 79 | 3 | 54 | 189 | 37 | 168 | 6.75e-22 | 95.1 |
| Msa0454220 | AT1G76320.2 | 54.386 | 57 | 26 | 0 | 192 | 248 | 400 | 456 | 7.67e-16 | 77.4 |
| Msa0454220 | AT1G76320.1 | 37.956 | 137 | 79 | 3 | 54 | 189 | 37 | 168 | 6.89e-22 | 95.1 |
| Msa0454220 | AT1G76320.1 | 54.386 | 57 | 26 | 0 | 192 | 248 | 400 | 456 | 7.33e-16 | 77.4 |
| Msa0454220 | AT1G76320.4 | 37.956 | 137 | 79 | 3 | 54 | 189 | 37 | 168 | 6.89e-22 | 95.1 |
| Msa0454220 | AT1G76320.4 | 54.386 | 57 | 26 | 0 | 192 | 248 | 400 | 456 | 7.33e-16 | 77.4 |
| Msa0454220 | AT4G38180.1 | 35.514 | 107 | 68 | 1 | 76 | 181 | 142 | 248 | 2.15e-18 | 85.1 |
| Msa0454220 | AT3G22170.2 | 30.065 | 153 | 68 | 3 | 54 | 189 | 110 | 240 | 7.31e-18 | 83.6 |
| Msa0454220 | AT3G22170.2 | 51.724 | 58 | 28 | 0 | 191 | 248 | 471 | 528 | 1.94e-12 | 67.4 |
| Msa0454220 | AT3G22170.1 | 30.065 | 153 | 68 | 3 | 54 | 189 | 110 | 240 | 7.31e-18 | 83.6 |
| Msa0454220 | AT3G22170.1 | 51.724 | 58 | 28 | 0 | 191 | 248 | 471 | 528 | 1.94e-12 | 67.4 |
| Msa0454220 | AT2G32250.5 | 46.667 | 60 | 31 | 1 | 55 | 113 | 79 | 138 | 3.04e-11 | 63.9 |
| Msa0454220 | AT2G32250.2 | 46.667 | 60 | 31 | 1 | 55 | 113 | 79 | 138 | 3.06e-11 | 63.9 |
| Msa0454220 | AT2G32250.4 | 46.667 | 60 | 31 | 1 | 55 | 113 | 79 | 138 | 3.06e-11 | 63.9 |
| Msa0454220 | AT2G32250.6 | 46.667 | 60 | 31 | 1 | 55 | 113 | 79 | 138 | 3.15e-11 | 63.9 |
| Msa0454220 | AT2G32250.1 | 46.667 | 60 | 31 | 1 | 55 | 113 | 79 | 138 | 3.15e-11 | 63.9 |
| Msa0454220 | AT2G32250.3 | 46.667 | 60 | 31 | 1 | 55 | 113 | 79 | 138 | 3.15e-11 | 63.9 |
| Msa0454220 | AT2G32250.7 | 45.902 | 61 | 32 | 1 | 54 | 113 | 37 | 97 | 3.16e-11 | 63.9 |
| Msa0454220 | AT2G32250.8 | 45.902 | 61 | 32 | 1 | 54 | 113 | 37 | 97 | 3.25e-11 | 63.5 |
Find 42 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAATTCCATTTCGATATA+AGG | 0.192928 | 3_3:-45334683 | None:intergenic |
| AAATAAATTGCAATGGAAAA+TGG | 0.239631 | 3_3:+45334874 | Msa0454220:CDS |
| AAAATATAAAGTTGCCTTGC+AGG | 0.266641 | 3_3:+45335887 | Msa0454220:CDS |
| GAGACTTATTGATTCTTCTA+TGG | 0.270224 | 3_3:-45334965 | None:intergenic |
| ACCAACACATGAATCATTAT+TGG | 0.289874 | 3_3:-45334633 | None:intergenic |
| GGCCATTGTGGCGAAAATTT+TGG | 0.314750 | 3_3:-45335033 | None:intergenic |
| TTCATACCCTCCATGTTGTT+TGG | 0.327554 | 3_3:-45335054 | None:intergenic |
| CTCTTTATGCTAAATCTGTT+GGG | 0.330055 | 3_3:+45334735 | Msa0454220:CDS |
| AGGTAAGAAAACTACATTAA+AGG | 0.341279 | 3_3:+45335854 | Msa0454220:intron |
| TCTCTTTATGCTAAATCTGT+TGG | 0.349983 | 3_3:+45334734 | Msa0454220:CDS |
| TATGCTAAATCTGTTGGGTT+TGG | 0.363737 | 3_3:+45334740 | Msa0454220:CDS |
| TCTTATGCTTGCACAAGATA+TGG | 0.382444 | 3_3:+45334777 | Msa0454220:CDS |
| TTGAAACTTTAGAACATGTT+GGG | 0.425181 | 3_3:+45335000 | Msa0454220:CDS |
| TCAAGAACCTTATATCGAAA+TGG | 0.429049 | 3_3:+45334676 | Msa0454220:CDS |
| GGAAAATAATGTGCATATGT+TGG | 0.461584 | 3_3:-45334939 | None:intergenic |
| ATGGAAGCCGCCGATGGTAA+TGG | 0.465416 | 3_3:+45334590 | None:intergenic |
| ATTGAAACTTTAGAACATGT+TGG | 0.497844 | 3_3:+45334999 | Msa0454220:CDS |
| CCCACATCCTTGTTTGAAGG+TGG | 0.507361 | 3_3:+45334827 | Msa0454220:CDS |
| TAACCCACATCCTTGTTTGA+AGG | 0.513563 | 3_3:+45334824 | Msa0454220:CDS |
| CGCATCAAAATAAATTGCAA+TGG | 0.515633 | 3_3:+45334867 | Msa0454220:CDS |
| CGTCGTTTGACATTAGAGTC+GGG | 0.519952 | 3_3:+45335125 | Msa0454220:CDS |
| ACCAATAATGATTCATGTGT+TGG | 0.526162 | 3_3:+45334632 | Msa0454220:CDS |
| ACTTCATGTGTATAAATCAC+TGG | 0.528446 | 3_3:-45335999 | None:intergenic |
| TCCACCTTCAAACAAGGATG+TGG | 0.533540 | 3_3:-45334828 | None:intergenic |
| TCGTCGTTTGACATTAGAGT+CGG | 0.546503 | 3_3:+45335124 | Msa0454220:CDS |
| GGGAGATGCAACATCAATGT+TGG | 0.546622 | 3_3:+45335145 | Msa0454220:CDS |
| TTATTGATTCTTCTATGGCA+AGG | 0.552372 | 3_3:-45334960 | None:intergenic |
| AAAGACTGTTGAGTTTCTTG+AGG | 0.553581 | 3_3:+45336055 | Msa0454220:CDS |
| AACTTGCTCTCCATTACCAT+CGG | 0.556401 | 3_3:-45334600 | None:intergenic |
| TCCATGTTGTTTGGCCATTG+TGG | 0.559258 | 3_3:-45335045 | None:intergenic |
| TACGTCTTCTCTATCCTGCA+AGG | 0.578872 | 3_3:-45335901 | None:intergenic |
| GCCACAATGGCCAAACAACA+TGG | 0.584490 | 3_3:+45335044 | Msa0454220:CDS |
| TGAAACTTTAGAACATGTTG+GGG | 0.588710 | 3_3:+45335001 | Msa0454220:CDS |
| TCACAATCCACCTTCAAACA+AGG | 0.603384 | 3_3:-45334834 | None:intergenic |
| CATTAAAGATCACAATCATG+AGG | 0.619087 | 3_3:+45334911 | Msa0454220:CDS |
| TTGTTTGAAGGTGGATTGTG+AGG | 0.619989 | 3_3:+45334836 | Msa0454220:CDS |
| CCACCTTCAAACAAGGATGT+GGG | 0.631217 | 3_3:-45334827 | None:intergenic |
| CATGGAGGGTATGAAAACAT+TGG | 0.636187 | 3_3:+45335062 | Msa0454220:CDS |
| AGGATGTGGGTTATGTGCGG+TGG | 0.667999 | 3_3:-45334814 | None:intergenic |
| CAATGGCCAAACAACATGGA+GGG | 0.684081 | 3_3:+45335048 | Msa0454220:CDS |
| ACAATGGCCAAACAACATGG+AGG | 0.716314 | 3_3:+45335047 | Msa0454220:CDS |
| ACAAGGATGTGGGTTATGTG+CGG | 0.747780 | 3_3:-45334817 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATAAAGGATACATTTTT+TGG | + | chr3_3:45335774-45335793 | Msa0454220:intron | 15.0% |
| !!! | TATATAAAGGATACATTTTT+TGG | + | chr3_3:45335774-45335793 | Msa0454220:intron | 15.0% |
| !! | AAATAAATTGCAATGGAAAA+TGG | + | chr3_3:45334874-45334893 | Msa0454220:CDS | 20.0% |
| !!! | ATTTTTTTATGCAACTGATT+TGG | + | chr3_3:45335201-45335220 | Msa0454220:intron | 20.0% |
| !! | TGATTATTCACACAAATAAA+AGG | - | chr3_3:45335355-45335374 | None:intergenic | 20.0% |
| !! | AATGTATCCTTTATATAAAC+AGG | - | chr3_3:45335771-45335790 | None:intergenic | 20.0% |
| !! | AAATAAATTGCAATGGAAAA+TGG | + | chr3_3:45334874-45334893 | Msa0454220:CDS | 20.0% |
| !!! | ATTTTTTTATGCAACTGATT+TGG | + | chr3_3:45335201-45335220 | Msa0454220:intron | 20.0% |
| !! | TGATTATTCACACAAATAAA+AGG | - | chr3_3:45335355-45335374 | None:intergenic | 20.0% |
| !! | AATGTATCCTTTATATAAAC+AGG | - | chr3_3:45335771-45335790 | None:intergenic | 20.0% |
| ! | TCAAATTCCATTTCGATATA+AGG | - | chr3_3:45334686-45334705 | None:intergenic | 25.0% |
| !!! | ATTGAAACTTTAGAACATGT+TGG | + | chr3_3:45334999-45335018 | Msa0454220:CDS | 25.0% |
| !!! | TTGAAACTTTAGAACATGTT+GGG | + | chr3_3:45335000-45335019 | Msa0454220:CDS | 25.0% |
| ! | AGAGATGATTATCAAGAATT+TGG | + | chr3_3:45335271-45335290 | Msa0454220:intron | 25.0% |
| ! | TGAATAATCACTTTAAGTCA+AGG | + | chr3_3:45335365-45335384 | Msa0454220:intron | 25.0% |
| ! | ATCAGTTATTATTGCATTTG+AGG | - | chr3_3:45335478-45335497 | None:intergenic | 25.0% |
| ! | GGCAACAATTTATAGATAAA+TGG | + | chr3_3:45335667-45335686 | Msa0454220:intron | 25.0% |
| !!! | ATAAAGGATACATTTTTTGG+TGG | + | chr3_3:45335777-45335796 | Msa0454220:intron | 25.0% |
| ! | GAAAAAAGAATTAATGCTCT+CGG | - | chr3_3:45335823-45335842 | None:intergenic | 25.0% |
| !!! | TCTTTTTTCGACAAATATGT+AGG | + | chr3_3:45335834-45335853 | Msa0454220:intron | 25.0% |
| ! | AGGTAAGAAAACTACATTAA+AGG | + | chr3_3:45335854-45335873 | Msa0454220:intron | 25.0% |
| !!! | AACAAGCTGATTTTAATACA+TGG | + | chr3_3:45335928-45335947 | Msa0454220:CDS | 25.0% |
| ! | TCAAATTCCATTTCGATATA+AGG | - | chr3_3:45334686-45334705 | None:intergenic | 25.0% |
| !!! | ATTGAAACTTTAGAACATGT+TGG | + | chr3_3:45334999-45335018 | Msa0454220:CDS | 25.0% |
| !!! | TTGAAACTTTAGAACATGTT+GGG | + | chr3_3:45335000-45335019 | Msa0454220:CDS | 25.0% |
| ! | AGAGATGATTATCAAGAATT+TGG | + | chr3_3:45335271-45335290 | Msa0454220:intron | 25.0% |
| ! | TGAATAATCACTTTAAGTCA+AGG | + | chr3_3:45335365-45335384 | Msa0454220:intron | 25.0% |
| ! | ATCAGTTATTATTGCATTTG+AGG | - | chr3_3:45335478-45335497 | None:intergenic | 25.0% |
| ! | GGCAACAATTTATAGATAAA+TGG | + | chr3_3:45335667-45335686 | Msa0454220:intron | 25.0% |
| !!! | ATAAAGGATACATTTTTTGG+TGG | + | chr3_3:45335777-45335796 | Msa0454220:intron | 25.0% |
| ! | GAAAAAAGAATTAATGCTCT+CGG | - | chr3_3:45335823-45335842 | None:intergenic | 25.0% |
| !!! | TCTTTTTTCGACAAATATGT+AGG | + | chr3_3:45335834-45335853 | Msa0454220:intron | 25.0% |
| ! | AGGTAAGAAAACTACATTAA+AGG | + | chr3_3:45335854-45335873 | Msa0454220:intron | 25.0% |
| !!! | AACAAGCTGATTTTAATACA+TGG | + | chr3_3:45335928-45335947 | Msa0454220:CDS | 25.0% |
| ACCAATAATGATTCATGTGT+TGG | + | chr3_3:45334632-45334651 | Msa0454220:CDS | 30.0% | |
| ACCAACACATGAATCATTAT+TGG | - | chr3_3:45334636-45334655 | None:intergenic | 30.0% | |
| TCAAGAACCTTATATCGAAA+TGG | + | chr3_3:45334676-45334695 | Msa0454220:CDS | 30.0% | |
| TCTCTTTATGCTAAATCTGT+TGG | + | chr3_3:45334734-45334753 | Msa0454220:CDS | 30.0% | |
| CTCTTTATGCTAAATCTGTT+GGG | + | chr3_3:45334735-45334754 | Msa0454220:CDS | 30.0% | |
| CGCATCAAAATAAATTGCAA+TGG | + | chr3_3:45334867-45334886 | Msa0454220:CDS | 30.0% | |
| CATTAAAGATCACAATCATG+AGG | + | chr3_3:45334911-45334930 | Msa0454220:CDS | 30.0% | |
| GGAAAATAATGTGCATATGT+TGG | - | chr3_3:45334942-45334961 | None:intergenic | 30.0% | |
| !! | TTATTGATTCTTCTATGGCA+AGG | - | chr3_3:45334963-45334982 | None:intergenic | 30.0% |
| !! | GAGACTTATTGATTCTTCTA+TGG | - | chr3_3:45334968-45334987 | None:intergenic | 30.0% |
| !! | TGAAACTTTAGAACATGTTG+GGG | + | chr3_3:45335001-45335020 | Msa0454220:CDS | 30.0% |
| TCAGTTGCATAAAAAAATCG+AGG | - | chr3_3:45335199-45335218 | None:intergenic | 30.0% | |
| ! | ATCGTGTAAGAAACGTATTT+TGG | + | chr3_3:45335233-45335252 | Msa0454220:intron | 30.0% |
| ! | TCGTGTAAGAAACGTATTTT+GGG | + | chr3_3:45335234-45335253 | Msa0454220:intron | 30.0% |
| ACACAAATAAAAGGAGCAAA+TGG | - | chr3_3:45335346-45335365 | None:intergenic | 30.0% | |
| TCAAGACATAACAATGAAAG+TGG | + | chr3_3:45335497-45335516 | Msa0454220:intron | 30.0% | |
| GTATATGCCAAAGACAAAAT+CGG | - | chr3_3:45335554-45335573 | None:intergenic | 30.0% | |
| TCTTTGGCATATACTAAGAA+AGG | + | chr3_3:45335560-45335579 | Msa0454220:intron | 30.0% | |
| GGTCATGTAATAAGTGAAAA+TGG | + | chr3_3:45335597-45335616 | Msa0454220:intron | 30.0% | |
| AAAATATAAAGTTGCCTTGC+AGG | + | chr3_3:45335887-45335906 | Msa0454220:CDS | 30.0% | |
| !! | TGATTTTAATACATGGCACA+AGG | + | chr3_3:45335935-45335954 | Msa0454220:CDS | 30.0% |
| ACTTCATGTGTATAAATCAC+TGG | - | chr3_3:45336002-45336021 | None:intergenic | 30.0% | |
| ACCAATAATGATTCATGTGT+TGG | + | chr3_3:45334632-45334651 | Msa0454220:CDS | 30.0% | |
| ACCAACACATGAATCATTAT+TGG | - | chr3_3:45334636-45334655 | None:intergenic | 30.0% | |
| TCAAGAACCTTATATCGAAA+TGG | + | chr3_3:45334676-45334695 | Msa0454220:CDS | 30.0% | |
| TCTCTTTATGCTAAATCTGT+TGG | + | chr3_3:45334734-45334753 | Msa0454220:CDS | 30.0% | |
| CTCTTTATGCTAAATCTGTT+GGG | + | chr3_3:45334735-45334754 | Msa0454220:CDS | 30.0% | |
| CGCATCAAAATAAATTGCAA+TGG | + | chr3_3:45334867-45334886 | Msa0454220:CDS | 30.0% | |
| CATTAAAGATCACAATCATG+AGG | + | chr3_3:45334911-45334930 | Msa0454220:CDS | 30.0% | |
| GGAAAATAATGTGCATATGT+TGG | - | chr3_3:45334942-45334961 | None:intergenic | 30.0% | |
| !! | TTATTGATTCTTCTATGGCA+AGG | - | chr3_3:45334963-45334982 | None:intergenic | 30.0% |
| !! | GAGACTTATTGATTCTTCTA+TGG | - | chr3_3:45334968-45334987 | None:intergenic | 30.0% |
| !! | TGAAACTTTAGAACATGTTG+GGG | + | chr3_3:45335001-45335020 | Msa0454220:CDS | 30.0% |
| TCAGTTGCATAAAAAAATCG+AGG | - | chr3_3:45335199-45335218 | None:intergenic | 30.0% | |
| ! | ATCGTGTAAGAAACGTATTT+TGG | + | chr3_3:45335233-45335252 | Msa0454220:intron | 30.0% |
| ! | TCGTGTAAGAAACGTATTTT+GGG | + | chr3_3:45335234-45335253 | Msa0454220:intron | 30.0% |
| ACACAAATAAAAGGAGCAAA+TGG | - | chr3_3:45335346-45335365 | None:intergenic | 30.0% | |
| TCAAGACATAACAATGAAAG+TGG | + | chr3_3:45335497-45335516 | Msa0454220:intron | 30.0% | |
| GTATATGCCAAAGACAAAAT+CGG | - | chr3_3:45335554-45335573 | None:intergenic | 30.0% | |
| TCTTTGGCATATACTAAGAA+AGG | + | chr3_3:45335560-45335579 | Msa0454220:intron | 30.0% | |
| GGTCATGTAATAAGTGAAAA+TGG | + | chr3_3:45335597-45335616 | Msa0454220:intron | 30.0% | |
| AAAATATAAAGTTGCCTTGC+AGG | + | chr3_3:45335887-45335906 | Msa0454220:CDS | 30.0% | |
| !! | TGATTTTAATACATGGCACA+AGG | + | chr3_3:45335935-45335954 | Msa0454220:CDS | 30.0% |
| ACTTCATGTGTATAAATCAC+TGG | - | chr3_3:45336002-45336021 | None:intergenic | 30.0% | |
| TATGCTAAATCTGTTGGGTT+TGG | + | chr3_3:45334740-45334759 | Msa0454220:CDS | 35.0% | |
| TCTTATGCTTGCACAAGATA+TGG | + | chr3_3:45334777-45334796 | Msa0454220:CDS | 35.0% | |
| ! | AACCAAAATTTTCGCCACAA+TGG | + | chr3_3:45335031-45335050 | Msa0454220:CDS | 35.0% |
| !! | TGTAAGAAACGTATTTTGGG+TGG | + | chr3_3:45335237-45335256 | Msa0454220:intron | 35.0% |
| CACTTTAAGTCAAGGTTACT+TGG | + | chr3_3:45335373-45335392 | Msa0454220:intron | 35.0% | |
| AGACCTCAAATACTTTCACT+TGG | + | chr3_3:45335416-45335435 | Msa0454220:intron | 35.0% | |
| !! | CAACCAAGTGAAAGTATTTG+AGG | - | chr3_3:45335422-45335441 | None:intergenic | 35.0% |
| !! | TCACTTGGTTGATGAAAACA+TGG | + | chr3_3:45335431-45335450 | Msa0454220:intron | 35.0% |
| ACTTGAGCATTTACAAGTCT+TGG | + | chr3_3:45335640-45335659 | Msa0454220:intron | 35.0% | |
| TATAGATAAATGGCACGAGA+TGG | + | chr3_3:45335677-45335696 | Msa0454220:intron | 35.0% | |
| GTGGAAAAATTTCAGCTACA+GGG | + | chr3_3:45335699-45335718 | Msa0454220:intron | 35.0% | |
| TGGAAAAATTTCAGCTACAG+GGG | + | chr3_3:45335700-45335719 | Msa0454220:intron | 35.0% | |
| ! | TATATGAAGAGTGTGAGCAT+CGG | + | chr3_3:45335742-45335761 | Msa0454220:intron | 35.0% |
| TCGGGTTCCTGTTTATATAA+AGG | + | chr3_3:45335761-45335780 | Msa0454220:intron | 35.0% | |
| !! | ATCTGCTTTTCAAATGGTGA+AGG | - | chr3_3:45335978-45335997 | None:intergenic | 35.0% |
| AAAGACTGTTGAGTTTCTTG+AGG | + | chr3_3:45336055-45336074 | Msa0454220:CDS | 35.0% | |
| TATGCTAAATCTGTTGGGTT+TGG | + | chr3_3:45334740-45334759 | Msa0454220:CDS | 35.0% | |
| TCTTATGCTTGCACAAGATA+TGG | + | chr3_3:45334777-45334796 | Msa0454220:CDS | 35.0% | |
| ! | AACCAAAATTTTCGCCACAA+TGG | + | chr3_3:45335031-45335050 | Msa0454220:CDS | 35.0% |
| !! | TGTAAGAAACGTATTTTGGG+TGG | + | chr3_3:45335237-45335256 | Msa0454220:intron | 35.0% |
| CACTTTAAGTCAAGGTTACT+TGG | + | chr3_3:45335373-45335392 | Msa0454220:intron | 35.0% | |
| AGACCTCAAATACTTTCACT+TGG | + | chr3_3:45335416-45335435 | Msa0454220:intron | 35.0% | |
| !! | CAACCAAGTGAAAGTATTTG+AGG | - | chr3_3:45335422-45335441 | None:intergenic | 35.0% |
| !! | TCACTTGGTTGATGAAAACA+TGG | + | chr3_3:45335431-45335450 | Msa0454220:intron | 35.0% |
| ACTTGAGCATTTACAAGTCT+TGG | + | chr3_3:45335640-45335659 | Msa0454220:intron | 35.0% | |
| TATAGATAAATGGCACGAGA+TGG | + | chr3_3:45335677-45335696 | Msa0454220:intron | 35.0% | |
| GTGGAAAAATTTCAGCTACA+GGG | + | chr3_3:45335699-45335718 | Msa0454220:intron | 35.0% | |
| TGGAAAAATTTCAGCTACAG+GGG | + | chr3_3:45335700-45335719 | Msa0454220:intron | 35.0% | |
| ! | TATATGAAGAGTGTGAGCAT+CGG | + | chr3_3:45335742-45335761 | Msa0454220:intron | 35.0% |
| TCGGGTTCCTGTTTATATAA+AGG | + | chr3_3:45335761-45335780 | Msa0454220:intron | 35.0% | |
| !! | ATCTGCTTTTCAAATGGTGA+AGG | - | chr3_3:45335978-45335997 | None:intergenic | 35.0% |
| AAAGACTGTTGAGTTTCTTG+AGG | + | chr3_3:45336055-45336074 | Msa0454220:CDS | 35.0% | |
| ! | TAACCCACATCCTTGTTTGA+AGG | + | chr3_3:45334824-45334843 | Msa0454220:CDS | 40.0% |
| TCACAATCCACCTTCAAACA+AGG | - | chr3_3:45334837-45334856 | None:intergenic | 40.0% | |
| !! | TTGTTTGAAGGTGGATTGTG+AGG | + | chr3_3:45334836-45334855 | Msa0454220:CDS | 40.0% |
| TTCATACCCTCCATGTTGTT+TGG | - | chr3_3:45335057-45335076 | None:intergenic | 40.0% | |
| ! | CATGGAGGGTATGAAAACAT+TGG | + | chr3_3:45335062-45335081 | Msa0454220:CDS | 40.0% |
| TCGTCGTTTGACATTAGAGT+CGG | + | chr3_3:45335124-45335143 | Msa0454220:CDS | 40.0% | |
| AATGAAAGTGGCGATTAGTG+AGG | + | chr3_3:45335509-45335528 | Msa0454220:intron | 40.0% | |
| ATTACATGACCAAGCTTCTC+AGG | - | chr3_3:45335588-45335607 | None:intergenic | 40.0% | |
| GCATTTACAAGTCTTGGTCA+AGG | + | chr3_3:45335646-45335665 | Msa0454220:intron | 40.0% | |
| GGTGGAAAAATTTCAGCTAC+AGG | + | chr3_3:45335698-45335717 | Msa0454220:intron | 40.0% | |
| ! | ATATGAAGAGTGTGAGCATC+GGG | + | chr3_3:45335743-45335762 | Msa0454220:intron | 40.0% |
| !!! | GGTGAAGGAGTTTTAAGAAC+AGG | - | chr3_3:45335963-45335982 | None:intergenic | 40.0% |
| !! | ACTGGCATCTGCTTTTCAAA+TGG | - | chr3_3:45335984-45336003 | None:intergenic | 40.0% |
| ! | TAACCCACATCCTTGTTTGA+AGG | + | chr3_3:45334824-45334843 | Msa0454220:CDS | 40.0% |
| TCACAATCCACCTTCAAACA+AGG | - | chr3_3:45334837-45334856 | None:intergenic | 40.0% | |
| !! | TTGTTTGAAGGTGGATTGTG+AGG | + | chr3_3:45334836-45334855 | Msa0454220:CDS | 40.0% |
| TTCATACCCTCCATGTTGTT+TGG | - | chr3_3:45335057-45335076 | None:intergenic | 40.0% | |
| ! | CATGGAGGGTATGAAAACAT+TGG | + | chr3_3:45335062-45335081 | Msa0454220:CDS | 40.0% |
| TCGTCGTTTGACATTAGAGT+CGG | + | chr3_3:45335124-45335143 | Msa0454220:CDS | 40.0% | |
| AATGAAAGTGGCGATTAGTG+AGG | + | chr3_3:45335509-45335528 | Msa0454220:intron | 40.0% | |
| ATTACATGACCAAGCTTCTC+AGG | - | chr3_3:45335588-45335607 | None:intergenic | 40.0% | |
| GCATTTACAAGTCTTGGTCA+AGG | + | chr3_3:45335646-45335665 | Msa0454220:intron | 40.0% | |
| GGTGGAAAAATTTCAGCTAC+AGG | + | chr3_3:45335698-45335717 | Msa0454220:intron | 40.0% | |
| ! | ATATGAAGAGTGTGAGCATC+GGG | + | chr3_3:45335743-45335762 | Msa0454220:intron | 40.0% |
| !!! | GGTGAAGGAGTTTTAAGAAC+AGG | - | chr3_3:45335963-45335982 | None:intergenic | 40.0% |
| !! | ACTGGCATCTGCTTTTCAAA+TGG | - | chr3_3:45335984-45336003 | None:intergenic | 40.0% |
| ! | ACAAGGATGTGGGTTATGTG+CGG | - | chr3_3:45334820-45334839 | None:intergenic | 45.0% |
| CCACCTTCAAACAAGGATGT+GGG | - | chr3_3:45334830-45334849 | None:intergenic | 45.0% | |
| TCCACCTTCAAACAAGGATG+TGG | - | chr3_3:45334831-45334850 | None:intergenic | 45.0% | |
| ! | GGCCATTGTGGCGAAAATTT+TGG | - | chr3_3:45335036-45335055 | None:intergenic | 45.0% |
| ! | TCCATGTTGTTTGGCCATTG+TGG | - | chr3_3:45335048-45335067 | None:intergenic | 45.0% |
| ACAATGGCCAAACAACATGG+AGG | + | chr3_3:45335047-45335066 | Msa0454220:CDS | 45.0% | |
| CAATGGCCAAACAACATGGA+GGG | + | chr3_3:45335048-45335067 | Msa0454220:CDS | 45.0% | |
| CGTCGTTTGACATTAGAGTC+GGG | + | chr3_3:45335125-45335144 | Msa0454220:CDS | 45.0% | |
| GGGAGATGCAACATCAATGT+TGG | + | chr3_3:45335145-45335164 | Msa0454220:CDS | 45.0% | |
| GAAAACATGGCTCAGAGCAA+TGG | + | chr3_3:45335444-45335463 | Msa0454220:intron | 45.0% | |
| !! | CAAAATCGGTGTCGAGTGTT+TGG | - | chr3_3:45335540-45335559 | None:intergenic | 45.0% |
| !!! | CTCGACACCGATTTTGTCTT+TGG | + | chr3_3:45335544-45335563 | Msa0454220:intron | 45.0% |
| AGAAAGGTTCCTGAGAAGCT+TGG | + | chr3_3:45335576-45335595 | Msa0454220:intron | 45.0% | |
| AGATAAATGGCACGAGATGG+TGG | + | chr3_3:45335680-45335699 | Msa0454220:intron | 45.0% | |
| TACGTCTTCTCTATCCTGCA+AGG | - | chr3_3:45335904-45335923 | None:intergenic | 45.0% | |
| ! | ACAAGGATGTGGGTTATGTG+CGG | - | chr3_3:45334820-45334839 | None:intergenic | 45.0% |
| CCACCTTCAAACAAGGATGT+GGG | - | chr3_3:45334830-45334849 | None:intergenic | 45.0% | |
| TCCACCTTCAAACAAGGATG+TGG | - | chr3_3:45334831-45334850 | None:intergenic | 45.0% | |
| ! | GGCCATTGTGGCGAAAATTT+TGG | - | chr3_3:45335036-45335055 | None:intergenic | 45.0% |
| ! | TCCATGTTGTTTGGCCATTG+TGG | - | chr3_3:45335048-45335067 | None:intergenic | 45.0% |
| ACAATGGCCAAACAACATGG+AGG | + | chr3_3:45335047-45335066 | Msa0454220:CDS | 45.0% | |
| CAATGGCCAAACAACATGGA+GGG | + | chr3_3:45335048-45335067 | Msa0454220:CDS | 45.0% | |
| CGTCGTTTGACATTAGAGTC+GGG | + | chr3_3:45335125-45335144 | Msa0454220:CDS | 45.0% | |
| GGGAGATGCAACATCAATGT+TGG | + | chr3_3:45335145-45335164 | Msa0454220:CDS | 45.0% | |
| GAAAACATGGCTCAGAGCAA+TGG | + | chr3_3:45335444-45335463 | Msa0454220:intron | 45.0% | |
| !! | CAAAATCGGTGTCGAGTGTT+TGG | - | chr3_3:45335540-45335559 | None:intergenic | 45.0% |
| !!! | CTCGACACCGATTTTGTCTT+TGG | + | chr3_3:45335544-45335563 | Msa0454220:intron | 45.0% |
| AGAAAGGTTCCTGAGAAGCT+TGG | + | chr3_3:45335576-45335595 | Msa0454220:intron | 45.0% | |
| AGATAAATGGCACGAGATGG+TGG | + | chr3_3:45335680-45335699 | Msa0454220:intron | 45.0% | |
| TACGTCTTCTCTATCCTGCA+AGG | - | chr3_3:45335904-45335923 | None:intergenic | 45.0% | |
| ! | CCCACATCCTTGTTTGAAGG+TGG | + | chr3_3:45334827-45334846 | Msa0454220:CDS | 50.0% |
| GCCACAATGGCCAAACAACA+TGG | + | chr3_3:45335044-45335063 | Msa0454220:CDS | 50.0% | |
| ACATGGCTCAGAGCAATGGA+CGG | + | chr3_3:45335448-45335467 | Msa0454220:intron | 50.0% | |
| ! | CCCACATCCTTGTTTGAAGG+TGG | + | chr3_3:45334827-45334846 | Msa0454220:CDS | 50.0% |
| GCCACAATGGCCAAACAACA+TGG | + | chr3_3:45335044-45335063 | Msa0454220:CDS | 50.0% | |
| ACATGGCTCAGAGCAATGGA+CGG | + | chr3_3:45335448-45335467 | Msa0454220:intron | 50.0% | |
| ! | AGGATGTGGGTTATGTGCGG+TGG | - | chr3_3:45334817-45334836 | None:intergenic | 55.0% |
| ! | TTCAGCTACAGGGGCATGAG+TGG | + | chr3_3:45335709-45335728 | Msa0454220:intron | 55.0% |
| ! | AGGATGTGGGTTATGTGCGG+TGG | - | chr3_3:45334817-45334836 | None:intergenic | 55.0% |
| ! | TTCAGCTACAGGGGCATGAG+TGG | + | chr3_3:45335709-45335728 | Msa0454220:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 45334603 | 45336082 | 45334603 | ID=Msa0454220;Name=Msa0454220 |
| chr3_3 | mRNA | 45334603 | 45336082 | 45334603 | ID=Msa0454220-mRNA-1;Parent=Msa0454220;Name=Msa0454220-mRNA-1;_AED=0.24;_eAED=0.38;_QI=0|0|0|0.5|1|1|2|0|264 |
| chr3_3 | exon | 45334603 | 45335170 | 45334603 | ID=Msa0454220-mRNA-1:exon:8384;Parent=Msa0454220-mRNA-1 |
| chr3_3 | exon | 45335856 | 45336082 | 45335856 | ID=Msa0454220-mRNA-1:exon:8385;Parent=Msa0454220-mRNA-1 |
| chr3_3 | CDS | 45334603 | 45335170 | 45334603 | ID=Msa0454220-mRNA-1:cds;Parent=Msa0454220-mRNA-1 |
| chr3_3 | CDS | 45335856 | 45336082 | 45335856 | ID=Msa0454220-mRNA-1:cds;Parent=Msa0454220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
