AlfalfaGEDB | Msa0454630

M. sativa cultivar zhongmu-4 / Msa0454630

KEGG: K08867
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0454630	XP_003600252.3	96.899	129	4	0	2	130	169	297	5.39e-85	260

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0454630	sp\|Q6ICW6\|WNK11_ARATH	78.992	119	25	0	2	120	174	292	1.66e-66	206

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0454630	A0A396INP8	96.899	129	4	0	2	130	169	297	2.57e-85	260

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0454630	MtrunA17_Chr3g0101091	96.899	129	4	0	2	130	169	297	4.96e-89	260
Msa0454630	MtrunA17_Chr3g0101081	96.899	129	4	0	2	130	169	297	4.96e-89	260
Msa0454630	MtrunA17_Chr3g0101111	96.875	128	4	0	2	129	169	296	1.70e-88	259
Msa0454630	MtrunA17_Chr7g0225201	89.844	128	13	0	2	129	170	297	1.74e-80	239
Msa0454630	MtrunA17_Chr3g0132681	88.095	126	15	0	2	127	170	295	1.09e-77	231
Msa0454630	MtrunA17_Chr5g0445271	86.207	116	16	0	2	117	170	285	7.84e-72	217
Msa0454630	MtrunA17_Chr5g0447731	77.236	123	28	0	2	124	166	288	1.99e-68	207
Msa0454630	MtrunA17_Chr7g0273851	68.548	124	36	2	2	123	167	289	1.07e-49	168
Msa0454630	MtrunA17_Chr1g0190951	66.935	124	38	2	2	123	167	289	2.77e-48	164
Msa0454630	MtrunA17_Chr7g0244601	59.836	122	49	0	2	123	171	292	2.45e-47	160

Showing 1 to 10 of 40 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0454630	AT5G55560.1	78.992	119	25	0	2	120	174	292	1.69e-67	206
Msa0454630	AT3G48260.2	65.517	116	40	0	2	117	70	185	4.43e-50	164
Msa0454630	AT3G48260.1	65.517	116	40	0	2	117	165	280	2.40e-49	164
Msa0454630	AT3G04910.3	67.742	124	37	2	2	123	41	163	1.98e-48	163
Msa0454630	AT3G04910.2	67.742	124	37	2	2	123	144	266	4.39e-48	163
Msa0454630	AT3G04910.1	67.742	124	37	2	2	123	167	289	5.78e-48	163
Msa0454630	AT1G49160.7	64.103	117	41	1	2	118	44	159	2.01e-45	152
Msa0454630	AT1G49160.6	64.103	117	41	1	2	118	44	159	2.01e-45	152
Msa0454630	AT1G49160.4	64.103	117	41	1	2	118	44	159	2.01e-45	152
Msa0454630	AT3G18750.4	63.793	116	41	1	2	117	153	267	3.02e-45	154

Showing 1 to 10 of 79 entries

Previous1 2 3 4 5…8Next

Find 24 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGTCTCGCTCAACCA+AGG	0.579858	3_3:-46131113	Msa0454630:CDS
AAAGTGTCTCGCTCAACCAA+GGG	0.644670	3_3:-46131112	Msa0454630:CDS
AAGGGCTAGACCTTCTGCTG+AGG	0.666215	3_3:-46131094	Msa0454630:CDS
AATGTATATTAGGTTAAGAT+TGG	0.380565	3_3:-46131408	Msa0454630:intron
ACATTGTCACATTCACTATA+TGG	0.341582	3_3:+46131222	None:intergenic
AGCTCTGGTGCCATAAATTC+CGG	0.461898	3_3:+46131324	None:intergenic
ATATACAAGAAGGTGACTTC+AGG	0.446476	3_3:-46131192	Msa0454630:CDS
ATGGTAGACATATACTCATT+TGG	0.414002	3_3:-46131279	Msa0454630:CDS
CATTCAGCGCATTCAGTTCT+AGG	0.181449	3_3:-46131351	Msa0454630:CDS
CTTAGGTTTGGCAGCAATTG+TGG	0.415298	3_3:-46131382	Msa0454630:CDS

Showing 1 to 10 of 24 entries

Previous1 2 3Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TCTTGATCAAAGTATGACTA+TGG	-	chr3_3:46131445-46131464	Msa0454630:intron	30.0%
ATTTATATGTTGCGACACTA+GGG	+	chr3_3:46131489-46131508	None:intergenic	30.0%
AATTTATATGTTGCGACACT+AGG	+	chr3_3:46131490-46131509	None:intergenic	30.0%
TAGTGTCGCAACATATAAAT+TGG	-	chr3_3:46131489-46131508	Msa0454630:intron	30.0%
AGTGTCGCAACATATAAATT+GGG	-	chr3_3:46131490-46131509	Msa0454630:intron	30.0%
CATACCAAGTCTCAATAATT+AGG	-	chr3_3:46131563-46131582	Msa0454630:intron	30.0%
TGTAGAGCCATAAAAATGTT+AGG	-	chr3_3:46131682-46131701	Msa0454630:intron	30.0%
TAAAGTCTTTCAATCATTGC+AGG	+	chr3_3:46132190-46132209	None:intergenic	30.0%
CAAAAACATTACTGCATTTG+AGG	+	chr3_3:46132456-46132475	None:intergenic	30.0%
TGAAACAGAAATAATGTACC+TGG	+	chr3_3:46132495-46132514	None:intergenic	30.0%

Showing 1 to 10 of 190 entries

Previous1 2 3 4 5…19Next

Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	46131029	46132975	46131029	ID=Msa0454630;Name=Msa0454630
chr3_3	mRNA	46131029	46132975	46131029	ID=Msa0454630-mRNA-1;Parent=Msa0454630;Name=Msa0454630-mRNA-1;_AED=0.43;_eAED=0.43;_QI=0\|0\|0\|0.5\|1\|1\|2\|0\|130
chr3_3	exon	46132973	46132975	46132973	ID=Msa0454630-mRNA-1:exon:8620;Parent=Msa0454630-mRNA-1
chr3_3	exon	46131029	46131418	46131029	ID=Msa0454630-mRNA-1:exon:8619;Parent=Msa0454630-mRNA-1
chr3_3	CDS	46132973	46132975	46132973	ID=Msa0454630-mRNA-1:cds;Parent=Msa0454630-mRNA-1
chr3_3	CDS	46131029	46131418	46131029	ID=Msa0454630-mRNA-1:cds;Parent=Msa0454630-mRNA-1

Gene Sequence

>Msa0454630

ATGGTTAAGATTGGTGACTTAGGTTTGGCAGCAATTGTGGGAAAGAATCATTCAGCGCATTCAGTTCTAGGCACACCGGAATTTATGGCACCAGAGCTATATGAAGAGGATTACACAGAAATGGTAGACATATACTCATTTGGAATGTTAGTATTAGAGATGGTGACACTAGAGATTCCATATAGTGAATGTGACAATGTTGCAAAGATATACAAGAAGGTGACTTCAGGTGTGAGACCGCAATCCTTGAACAAGATAAAAGATGTAGAAGTGAAGACTTTCATCGAAAAGTGTCTCGCTCAACCAAGGGCTAGACCTTCTGCTGAGGAATTGCTAAAGGATCCTTTTTTTGATGATGTAGAGTACGATGAAAACGACGATGTTGATTACTAA

Protein sequence

>Msa0454630

MVKIGDLGLAAIVGKNHSAHSVLGTPEFMAPELYEEDYTEMVDIYSFGMLVLEMVTLEIPYSECDNVAKIYKKVTSGVRPQSLNKIKDVEVKTFIEKCLAQPRARPSAEELLKDPFFDDVEYDENDDVDY*