Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0455110 | RHN51502.1 | 70.476 | 210 | 57 | 1 | 268 | 477 | 38 | 242 | 4.27e-90 | 291 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0455110 | sp|O24047|MDHC_MESCR | 73.913 | 46 | 12 | 0 | 556 | 601 | 15 | 60 | 1.61e-11 | 69.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0455110 | A0A396HDU9 | 70.476 | 210 | 57 | 1 | 268 | 477 | 38 | 242 | 2.04e-90 | 291 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0455110 | MtrunA17_Chr6g0469311 | 70.476 | 210 | 57 | 1 | 268 | 477 | 38 | 242 | 3.93e-94 | 291 |
| Msa0455110 | MtrunA17_Chr1g0207661 | 83.784 | 148 | 24 | 0 | 185 | 332 | 1 | 148 | 2.96e-71 | 247 |
| Msa0455110 | MtrunA17_Chr8g0389491 | 81.679 | 131 | 22 | 1 | 25 | 155 | 17 | 145 | 1.89e-59 | 198 |
| Msa0455110 | MtrunA17_Chr1g0176351 | 69.565 | 92 | 26 | 1 | 72 | 163 | 2 | 91 | 1.91e-36 | 136 |
| Msa0455110 | MtrunA17_Chr4g0024031 | 58.929 | 112 | 41 | 3 | 72 | 180 | 2 | 111 | 3.94e-24 | 107 |
| Msa0455110 | MtrunA17_Chr2g0328251 | 56.250 | 96 | 37 | 3 | 72 | 164 | 2 | 95 | 1.58e-23 | 105 |
| Msa0455110 | MtrunA17_Chr2g0328241 | 53.774 | 106 | 44 | 3 | 73 | 175 | 3 | 106 | 8.24e-20 | 94.0 |
| Msa0455110 | MtrunA17_Chr5g0411441 | 78.846 | 52 | 11 | 0 | 610 | 661 | 427 | 478 | 6.89e-19 | 91.3 |
| Msa0455110 | MtrunA17_Chr8g0356101 | 69.737 | 76 | 17 | 1 | 1 | 70 | 33 | 108 | 1.39e-17 | 79.0 |
| Msa0455110 | MtrunA17_Chr8g0356091 | 69.231 | 52 | 14 | 1 | 130 | 181 | 1 | 50 | 2.16e-14 | 71.2 |
| Msa0455110 | MtrunA17_Chr5g0402601 | 85.000 | 40 | 6 | 0 | 400 | 439 | 477 | 516 | 1.00e-12 | 71.6 |
| Msa0455110 | MtrunA17_Chr1g0167651 | 69.565 | 46 | 14 | 0 | 556 | 601 | 15 | 60 | 1.37e-11 | 66.2 |
| Msa0455110 | MtrunA17_Chr1g0187751 | 69.565 | 46 | 14 | 0 | 556 | 601 | 15 | 60 | 1.60e-11 | 66.2 |
| Msa0455110 | MtrunA17_Chr6g0485261 | 69.767 | 43 | 13 | 0 | 430 | 472 | 794 | 836 | 1.62e-11 | 67.8 |
| Msa0455110 | MtrunA17_Chr3g0133541 | 77.500 | 40 | 9 | 0 | 400 | 439 | 412 | 451 | 2.20e-11 | 67.0 |
| Msa0455110 | MtrunA17_Chr8g0334691 | 86.486 | 37 | 5 | 0 | 565 | 601 | 1 | 37 | 4.19e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0455110 | AT1G04410.1 | 73.913 | 46 | 12 | 0 | 556 | 601 | 15 | 60 | 3.14e-12 | 68.9 |
| Msa0455110 | AT5G43330.1 | 71.739 | 46 | 13 | 0 | 556 | 601 | 15 | 60 | 5.36e-12 | 68.2 |
| Msa0455110 | AT5G66850.1 | 75.610 | 41 | 10 | 0 | 399 | 439 | 450 | 490 | 1.34e-11 | 68.2 |
| Msa0455110 | AT5G66850.2 | 75.610 | 41 | 10 | 0 | 399 | 439 | 450 | 490 | 1.48e-11 | 68.2 |
Find 124 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATCCCTCTTGCAATTAT+TGG | 0.121406 | 3_3:+47379066 | None:intergenic |
| TAAGCTTGCTGAACCATTTC+TGG | 0.125707 | 3_3:-47379451 | Msa0455110:CDS |
| TCAGATTCATTGCTATATTT+TGG | 0.159117 | 3_3:+47380533 | None:intergenic |
| ACCCGTCTCCACATTTAATT+TGG | 0.182489 | 3_3:+47379662 | None:intergenic |
| GAGAACCAATTCCAGTTATT+AGG | 0.191850 | 3_3:-47380595 | Msa0455110:CDS |
| AAGTTATCTGTTGCTCCTTA+TGG | 0.198716 | 3_3:-47378898 | Msa0455110:CDS |
| CCGGTCTATTGCTGCAAGTT+TGG | 0.267386 | 3_3:+47379698 | None:intergenic |
| AACTTGCTTGTTGATTCTTC+TGG | 0.276782 | 3_3:-47379480 | Msa0455110:CDS |
| GAGCTATTGGATCCACCTTT+TGG | 0.281548 | 3_3:-47379897 | Msa0455110:CDS |
| GTTCGGATTGTTTCTGTTGT+TGG | 0.311687 | 3_3:+47380625 | None:intergenic |
| ATATAGCAATGAATCTGATT+TGG | 0.312687 | 3_3:-47380528 | Msa0455110:CDS |
| CAGAATCCGTTGTTCGGAAT+TGG | 0.313392 | 3_3:-47379767 | Msa0455110:CDS |
| TTCTCAGTCGTAAAGTTGTT+AGG | 0.314549 | 3_3:+47380173 | None:intergenic |
| AAATTCTGTGAATGAGCTAT+TGG | 0.322862 | 3_3:-47379910 | Msa0455110:CDS |
| TAGTATATCAATGCAATTGA+TGG | 0.323827 | 3_3:+47379395 | None:intergenic |
| ATTAGTTCTCAAAACGAATA+TGG | 0.331577 | 3_3:-47379858 | Msa0455110:CDS |
| TGTACTACCAAAGGACAAAT+TGG | 0.333175 | 3_3:-47379102 | Msa0455110:CDS |
| AGCTCCATCTTCACCCCTTT+AGG | 0.339946 | 3_3:+47378982 | None:intergenic |
| TTTCGGTACGTAACAATAGT+AGG | 0.343195 | 3_3:+47380557 | None:intergenic |
| AGAACCAATTCCAGTTATTA+GGG | 0.346556 | 3_3:-47380594 | Msa0455110:CDS |
| AGACATGCTTTCAGAATTGC+AGG | 0.351995 | 3_3:-47380383 | Msa0455110:CDS |
| TTATTACAAACCCTAATAAC+TGG | 0.355362 | 3_3:+47380584 | None:intergenic |
| CAAACCCTAATAACTGGAAT+TGG | 0.355463 | 3_3:+47380590 | None:intergenic |
| TGATATTGAACGAGCATTAG+AGG | 0.356190 | 3_3:-47379007 | Msa0455110:CDS |
| ATCTTGATTGTGCAAGCATA+TGG | 0.357090 | 3_3:+47379331 | None:intergenic |
| CCACTTGATGTTAATATTGC+TGG | 0.359423 | 3_3:-47380260 | Msa0455110:CDS |
| GAATTTGAGTTCACTTGAAC+AGG | 0.365563 | 3_3:+47379927 | None:intergenic |
| TTTAATGTTGAAAATATGAA+TGG | 0.383830 | 3_3:-47378823 | Msa0455110:CDS |
| TTTCCTGTTGAACTAATCAT+TGG | 0.384379 | 3_3:+47380206 | None:intergenic |
| CTGAATCAGAGATTTCAAAT+TGG | 0.389606 | 3_3:+47380459 | None:intergenic |
| TGCATCACCAATTTGTCCTT+TGG | 0.398749 | 3_3:+47379095 | None:intergenic |
| TGAGTAGCTTTCTCCAGAAA+TGG | 0.399531 | 3_3:+47379438 | None:intergenic |
| TCTCCCACATCAGATTTCTT+AGG | 0.401221 | 3_3:+47379580 | None:intergenic |
| ATTGGTTCTCCTCCTCTGTT+CGG | 0.406990 | 3_3:+47380608 | None:intergenic |
| AGAATATACGTTATCAAAAC+AGG | 0.413319 | 3_3:+47380317 | None:intergenic |
| ATGACGAGGGCAGAGTTTGC+CGG | 0.418793 | 3_3:-47380730 | Msa0455110:CDS |
| AAACCAATGATTAGTTCAAC+AGG | 0.420450 | 3_3:-47380209 | Msa0455110:CDS |
| GAAACGAGTGATGCAGTTAC+TGG | 0.424624 | 3_3:-47379834 | Msa0455110:CDS |
| GAGCAGGAACAGACTCTGTT+TGG | 0.424703 | 3_3:+47379799 | None:intergenic |
| GAGTTCACTTGAACAGGAAT+GGG | 0.435056 | 3_3:+47379933 | None:intergenic |
| TCTCAGTCGTAAAGTTGTTA+GGG | 0.435210 | 3_3:+47380174 | None:intergenic |
| TTCTGGAGAAAGCTACTCAA+TGG | 0.453661 | 3_3:-47379434 | Msa0455110:CDS |
| TAATCTTTGTTGTAACAAAA+CGG | 0.453957 | 3_3:+47380425 | None:intergenic |
| TGAGTTCACTTGAACAGGAA+TGG | 0.455749 | 3_3:+47379932 | None:intergenic |
| AACAAAGATTATTCCTTGAC+CGG | 0.459635 | 3_3:-47380413 | Msa0455110:CDS |
| CAATTCACATAGATATCAAT+GGG | 0.461248 | 3_3:-47379506 | Msa0455110:CDS |
| GGAAGAAAATAGTCTGTTGA+AGG | 0.463937 | 3_3:+47378853 | None:intergenic |
| TGGACGACATCAAGTGGTTT+CGG | 0.466827 | 3_3:+47379153 | None:intergenic |
| GTTTCGGTGGCAGTGCAATC+AGG | 0.466903 | 3_3:+47379169 | None:intergenic |
| TTCTGAAAGCATGTCTCAAA+AGG | 0.471750 | 3_3:+47380390 | None:intergenic |
| TCAGATGTTACGATCCCAAC+AGG | 0.473593 | 3_3:-47379290 | Msa0455110:CDS |
| ACAATTCACATAGATATCAA+TGG | 0.474772 | 3_3:-47379507 | Msa0455110:CDS |
| GTTGATTTCTCAAATCCATA+AGG | 0.476137 | 3_3:+47378883 | None:intergenic |
| TGATAACAGAATCCGTTGTT+CGG | 0.477984 | 3_3:-47379773 | Msa0455110:CDS |
| GATGTTGATGTTGTGGCAGC+TGG | 0.480190 | 3_3:-47378955 | Msa0455110:CDS |
| ATTTGGCATTCAGTCTCATC+CGG | 0.480305 | 3_3:+47379679 | None:intergenic |
| CTCACTTAAGCATTGCAGAA+TGG | 0.480948 | 3_3:+47379221 | None:intergenic |
| GAGCATTAGAGGCACCTAAA+GGG | 0.483081 | 3_3:-47378996 | Msa0455110:CDS |
| AATTATGTTATTCAACTGCC+TGG | 0.487678 | 3_3:-47380002 | Msa0455110:CDS |
| GGCACCTAAAGGGGTGAAGA+TGG | 0.498260 | 3_3:-47378986 | Msa0455110:CDS |
| ATCAGGTGATTAGATGAGAA+TGG | 0.504770 | 3_3:+47379186 | None:intergenic |
| GAGAAAGCACAAAGTGTGCT+TGG | 0.505951 | 3_3:-47380089 | Msa0455110:CDS |
| GATTCTGTTATCACTTGAGC+AGG | 0.511926 | 3_3:+47379783 | None:intergenic |
| CCAAACTTGCAGCAATAGAC+CGG | 0.513055 | 3_3:-47379698 | Msa0455110:CDS |
| CAAAGTTCTGTCAGATCAGA+TGG | 0.514879 | 3_3:-47380681 | Msa0455110:CDS |
| ACTGCATCTCTCACTTCTCC+AGG | 0.516055 | 3_3:+47379984 | None:intergenic |
| ATTGCAAGAGGGATGATGTT+GGG | 0.517497 | 3_3:-47379060 | Msa0455110:CDS |
| GATCCCAACAGGTTTCTAGT+TGG | 0.518235 | 3_3:-47379279 | Msa0455110:CDS |
| TAGATATTACACAAAGTTGA+AGG | 0.519590 | 3_3:-47380492 | Msa0455110:CDS |
| TTGCTTAACATGATCAGCCA+TGG | 0.522165 | 3_3:-47380764 | None:intergenic |
| CGAGCATTAGAGGCACCTAA+AGG | 0.522345 | 3_3:-47378997 | Msa0455110:CDS |
| TAACTCGTGTTCGCGTAAGA+TGG | 0.522546 | 3_3:-47380360 | Msa0455110:CDS |
| TGCCAAATTAAATGTGGAGA+CGG | 0.524984 | 3_3:-47379664 | Msa0455110:CDS |
| AACTTTACGACTGAGAAGAT+AGG | 0.527969 | 3_3:-47380167 | Msa0455110:CDS |
| CCTTTCTCATGTACTACCAA+AGG | 0.529876 | 3_3:-47379111 | Msa0455110:CDS |
| GCCAAATTAAATGTGGAGAC+GGG | 0.535692 | 3_3:-47379663 | Msa0455110:CDS |
| TCCGTTGTTCGGAATTGGCT+AGG | 0.536672 | 3_3:-47379762 | Msa0455110:CDS |
| CCTTTGGTAGTACATGAGAA+AGG | 0.537275 | 3_3:+47379111 | None:intergenic |
| ACTTGAACAGGAATGGGTTG+TGG | 0.539413 | 3_3:+47379939 | None:intergenic |
| GCAAAGTTGCGTTACTGTAG+CGG | 0.541574 | 3_3:-47378789 | None:intergenic |
| ATGTCTCAAAAGGCCGGTCA+AGG | 0.544729 | 3_3:+47380400 | None:intergenic |
| TTCGGTACGTAACAATAGTA+GGG | 0.544923 | 3_3:+47380558 | None:intergenic |
| CAAGCCAACTAGAAACCTGT+TGG | 0.545365 | 3_3:+47379275 | None:intergenic |
| TTCGCAACATCTCCAAAAGG+TGG | 0.549066 | 3_3:+47379885 | None:intergenic |
| CGTCATAAGTTGATCTCCCA+TGG | 0.549454 | 3_3:+47380747 | None:intergenic |
| GGTAAGAGTTGTGGTTATGC+CGG | 0.550336 | 3_3:+47380711 | None:intergenic |
| TGCTTAACATGATCAGCCAT+GGG | 0.555729 | 3_3:-47380763 | None:intergenic |
| GATGGCTACGTGGACAGCTA+AGG | 0.558466 | 3_3:-47380663 | Msa0455110:CDS |
| GCATTGCAGAATGGAGGGAG+AGG | 0.558726 | 3_3:+47379230 | None:intergenic |
| GAAAGCATGTCTCAAAAGGC+CGG | 0.562709 | 3_3:+47380394 | None:intergenic |
| GCTAATTGATGTTGATGTTG+TGG | 0.572556 | 3_3:-47378962 | Msa0455110:CDS |
| CCAGCAATATTAACATCAAG+TGG | 0.575799 | 3_3:+47380260 | None:intergenic |
| AATTGCAAGAGGGATGATGT+TGG | 0.578254 | 3_3:-47379061 | Msa0455110:CDS |
| AAGCCAACTAGAAACCTGTT+GGG | 0.578311 | 3_3:+47379276 | None:intergenic |
| CAAGTCTGCTAATATTGAGA+TGG | 0.580192 | 3_3:-47378923 | Msa0455110:CDS |
| CATAACCACAACTCTTACCA+CGG | 0.583968 | 3_3:-47380707 | Msa0455110:CDS |
| CTTAAGCATTGCAGAATGGA+GGG | 0.584117 | 3_3:+47379225 | None:intergenic |
| TGATGCCGTGGTAAGAGTTG+TGG | 0.584739 | 3_3:+47380702 | None:intergenic |
| TGCGCCTAAGAAATCTGATG+TGG | 0.594249 | 3_3:-47379584 | Msa0455110:CDS |
| ACTTAAGCATTGCAGAATGG+AGG | 0.594485 | 3_3:+47379224 | None:intergenic |
| ACTCTGTTTGGTCTTCAACA+AGG | 0.608414 | 3_3:+47379811 | None:intergenic |
| AGTTTGGAAACAAGCAACAA+TGG | 0.608653 | 3_3:+47379714 | None:intergenic |
| ACTGAATGCCAAATTAAATG+TGG | 0.610766 | 3_3:-47379670 | Msa0455110:CDS |
| AGCATTAGAGGCACCTAAAG+GGG | 0.613235 | 3_3:-47378995 | Msa0455110:CDS |
| AGAAACAATCCGAACAGAGG+AGG | 0.617511 | 3_3:-47380617 | Msa0455110:CDS |
| TCAATGAGTGCGTTGTATCG+AGG | 0.620910 | 3_3:-47379615 | Msa0455110:CDS |
| GCAAATTGAGTGACGATGTG+TGG | 0.628632 | 3_3:+47379133 | None:intergenic |
| CTTGCTCCAATAATTGCAAG+AGG | 0.634209 | 3_3:-47379072 | Msa0455110:CDS |
| TGGATTTGAGAAATCAACAC+GGG | 0.634256 | 3_3:-47378878 | Msa0455110:CDS |
| AACAGAAACAATCCGAACAG+AGG | 0.642385 | 3_3:-47380620 | Msa0455110:CDS |
| GCGCCTAAGAAATCTGATGT+GGG | 0.649976 | 3_3:-47379583 | Msa0455110:CDS |
| ACAAAGTGTGCTTGGTACTG+TGG | 0.650062 | 3_3:-47380081 | Msa0455110:CDS |
| CTGACAGAACTTTGATGCCG+TGG | 0.651447 | 3_3:+47380690 | None:intergenic |
| ACCTAGCCAATTCCGAACAA+CGG | 0.653438 | 3_3:+47379761 | None:intergenic |
| GGGAGATCAACTTATGACGA+GGG | 0.669550 | 3_3:-47380743 | Msa0455110:CDS |
| CATTCTGCAATGCTTAAGTG+AGG | 0.671779 | 3_3:-47379220 | Msa0455110:CDS |
| TGGGAGATCAACTTATGACG+AGG | 0.671953 | 3_3:-47380744 | Msa0455110:CDS |
| TTGCTCCAATAATTGCAAGA+GGG | 0.684125 | 3_3:-47379071 | Msa0455110:CDS |
| ACGACATCAAGTGGTTTCGG+TGG | 0.687869 | 3_3:+47379156 | None:intergenic |
| AGACGGGTTTGAAAACAAAG+TGG | 0.699478 | 3_3:-47379647 | Msa0455110:CDS |
| GATGTGTGGACGACATCAAG+TGG | 0.711096 | 3_3:+47379147 | None:intergenic |
| TGTCAGATCAGATGGCTACG+TGG | 0.724397 | 3_3:-47380673 | Msa0455110:CDS |
| ATGGATTTGAGAAATCAACA+CGG | 0.755197 | 3_3:-47378879 | Msa0455110:CDS |
| AATTCACATAGATATCAATG+GGG | 0.785866 | 3_3:-47379505 | Msa0455110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCAACATTAAAATTTTC+TGG | + | chr3_3:47380718-47380737 | None:intergenic | 15.0% |
| !! | TTTAATGTTGAAAATATGAA+TGG | - | chr3_3:47380724-47380743 | Msa0455110:CDS | 15.0% |
| !!! | TTTTCAACATTAAAATTTTC+TGG | + | chr3_3:47380718-47380737 | None:intergenic | 15.0% |
| !! | TTTAATGTTGAAAATATGAA+TGG | - | chr3_3:47380724-47380743 | Msa0455110:CDS | 15.0% |
| !!! | TAATCTTTGTTGTAACAAAA+CGG | + | chr3_3:47379125-47379144 | None:intergenic | 20.0% |
| !!! | TTTTGATAACGTATATTCTA+AGG | - | chr3_3:47379234-47379253 | Msa0455110:CDS | 20.0% |
| !!! | TTTTTCATTGATAACAGAAT+CGG | + | chr3_3:47379495-47379514 | None:intergenic | 20.0% |
| !! | TGAAAAATCAAATCATGTTT+CGG | - | chr3_3:47379508-47379527 | Msa0455110:CDS | 20.0% |
| !!! | TAATCTTTGTTGTAACAAAA+CGG | + | chr3_3:47379125-47379144 | None:intergenic | 20.0% |
| !!! | TTTTGATAACGTATATTCTA+AGG | - | chr3_3:47379234-47379253 | Msa0455110:CDS | 20.0% |
| !!! | TTTTTCATTGATAACAGAAT+CGG | + | chr3_3:47379495-47379514 | None:intergenic | 20.0% |
| !! | TGAAAAATCAAATCATGTTT+CGG | - | chr3_3:47379508-47379527 | Msa0455110:CDS | 20.0% |
| ! | TTATTACAAACCCTAATAAC+TGG | + | chr3_3:47378966-47378985 | None:intergenic | 25.0% |
| !!! | CATTGCTATATTTTGGTTTT+CGG | + | chr3_3:47379010-47379029 | None:intergenic | 25.0% |
| !! | TCAGATTCATTGCTATATTT+TGG | + | chr3_3:47379017-47379036 | None:intergenic | 25.0% |
| ! | ATATAGCAATGAATCTGATT+TGG | - | chr3_3:47379019-47379038 | Msa0455110:CDS | 25.0% |
| ! | TAGATATTACACAAAGTTGA+AGG | - | chr3_3:47379055-47379074 | Msa0455110:CDS | 25.0% |
| ! | AGAATATACGTTATCAAAAC+AGG | + | chr3_3:47379233-47379252 | None:intergenic | 25.0% |
| !! | ATTAGTTCTCAAAACGAATA+TGG | - | chr3_3:47379689-47379708 | Msa0455110:CDS | 25.0% |
| !! | TTCACAAGACAATTTCTTTT+AGG | - | chr3_3:47379992-47380011 | Msa0455110:CDS | 25.0% |
| !! | TCACAAGACAATTTCTTTTA+GGG | - | chr3_3:47379993-47380012 | Msa0455110:CDS | 25.0% |
| ! | ACAATTCACATAGATATCAA+TGG | - | chr3_3:47380040-47380059 | Msa0455110:CDS | 25.0% |
| ! | CAATTCACATAGATATCAAT+GGG | - | chr3_3:47380041-47380060 | Msa0455110:CDS | 25.0% |
| ! | AATTCACATAGATATCAATG+GGG | - | chr3_3:47380042-47380061 | Msa0455110:CDS | 25.0% |
| ! | TAGTATATCAATGCAATTGA+TGG | + | chr3_3:47380155-47380174 | None:intergenic | 25.0% |
| ! | TTATTACAAACCCTAATAAC+TGG | + | chr3_3:47378966-47378985 | None:intergenic | 25.0% |
| !!! | CATTGCTATATTTTGGTTTT+CGG | + | chr3_3:47379010-47379029 | None:intergenic | 25.0% |
| !! | TCAGATTCATTGCTATATTT+TGG | + | chr3_3:47379017-47379036 | None:intergenic | 25.0% |
| ! | ATATAGCAATGAATCTGATT+TGG | - | chr3_3:47379019-47379038 | Msa0455110:CDS | 25.0% |
| ! | TAGATATTACACAAAGTTGA+AGG | - | chr3_3:47379055-47379074 | Msa0455110:CDS | 25.0% |
| ! | AGAATATACGTTATCAAAAC+AGG | + | chr3_3:47379233-47379252 | None:intergenic | 25.0% |
| !! | ATTAGTTCTCAAAACGAATA+TGG | - | chr3_3:47379689-47379708 | Msa0455110:CDS | 25.0% |
| !! | TTCACAAGACAATTTCTTTT+AGG | - | chr3_3:47379992-47380011 | Msa0455110:CDS | 25.0% |
| !! | TCACAAGACAATTTCTTTTA+GGG | - | chr3_3:47379993-47380012 | Msa0455110:CDS | 25.0% |
| ! | ACAATTCACATAGATATCAA+TGG | - | chr3_3:47380040-47380059 | Msa0455110:CDS | 25.0% |
| ! | CAATTCACATAGATATCAAT+GGG | - | chr3_3:47380041-47380060 | Msa0455110:CDS | 25.0% |
| ! | AATTCACATAGATATCAATG+GGG | - | chr3_3:47380042-47380061 | Msa0455110:CDS | 25.0% |
| ! | TAGTATATCAATGCAATTGA+TGG | + | chr3_3:47380155-47380174 | None:intergenic | 25.0% |
| AGAACCAATTCCAGTTATTA+GGG | - | chr3_3:47378953-47378972 | Msa0455110:CDS | 30.0% | |
| CTGAATCAGAGATTTCAAAT+TGG | + | chr3_3:47379091-47379110 | None:intergenic | 30.0% | |
| AACAAAGATTATTCCTTGAC+CGG | - | chr3_3:47379134-47379153 | Msa0455110:CDS | 30.0% | |
| ! | AAACCAATGATTAGTTCAAC+AGG | - | chr3_3:47379338-47379357 | Msa0455110:CDS | 30.0% |
| TTTCCTGTTGAACTAATCAT+TGG | + | chr3_3:47379344-47379363 | None:intergenic | 30.0% | |
| AATTATGTTATTCAACTGCC+TGG | - | chr3_3:47379545-47379564 | Msa0455110:CDS | 30.0% | |
| AAATTCTGTGAATGAGCTAT+TGG | - | chr3_3:47379637-47379656 | Msa0455110:CDS | 30.0% | |
| ACTGAATGCCAAATTAAATG+TGG | - | chr3_3:47379877-47379896 | Msa0455110:CDS | 30.0% | |
| !!! | AAGACAATTTCTTTTAGGGT+TGG | - | chr3_3:47379997-47380016 | Msa0455110:CDS | 30.0% |
| ! | GTTGATTTCTCAAATCCATA+AGG | + | chr3_3:47380667-47380686 | None:intergenic | 30.0% |
| ATGGATTTGAGAAATCAACA+CGG | - | chr3_3:47380668-47380687 | Msa0455110:CDS | 30.0% | |
| AGAACCAATTCCAGTTATTA+GGG | - | chr3_3:47378953-47378972 | Msa0455110:CDS | 30.0% | |
| CTGAATCAGAGATTTCAAAT+TGG | + | chr3_3:47379091-47379110 | None:intergenic | 30.0% | |
| AACAAAGATTATTCCTTGAC+CGG | - | chr3_3:47379134-47379153 | Msa0455110:CDS | 30.0% | |
| ! | AAACCAATGATTAGTTCAAC+AGG | - | chr3_3:47379338-47379357 | Msa0455110:CDS | 30.0% |
| TTTCCTGTTGAACTAATCAT+TGG | + | chr3_3:47379344-47379363 | None:intergenic | 30.0% | |
| AATTATGTTATTCAACTGCC+TGG | - | chr3_3:47379545-47379564 | Msa0455110:CDS | 30.0% | |
| AAATTCTGTGAATGAGCTAT+TGG | - | chr3_3:47379637-47379656 | Msa0455110:CDS | 30.0% | |
| ACTGAATGCCAAATTAAATG+TGG | - | chr3_3:47379877-47379896 | Msa0455110:CDS | 30.0% | |
| !!! | AAGACAATTTCTTTTAGGGT+TGG | - | chr3_3:47379997-47380016 | Msa0455110:CDS | 30.0% |
| ! | GTTGATTTCTCAAATCCATA+AGG | + | chr3_3:47380667-47380686 | None:intergenic | 30.0% |
| ATGGATTTGAGAAATCAACA+CGG | - | chr3_3:47380668-47380687 | Msa0455110:CDS | 30.0% | |
| GAGAACCAATTCCAGTTATT+AGG | - | chr3_3:47378952-47378971 | Msa0455110:CDS | 35.0% | |
| CAAACCCTAATAACTGGAAT+TGG | + | chr3_3:47378960-47378979 | None:intergenic | 35.0% | |
| TTCGGTACGTAACAATAGTA+GGG | + | chr3_3:47378992-47379011 | None:intergenic | 35.0% | |
| TTTCGGTACGTAACAATAGT+AGG | + | chr3_3:47378993-47379012 | None:intergenic | 35.0% | |
| ! | TTCTGAAAGCATGTCTCAAA+AGG | + | chr3_3:47379160-47379179 | None:intergenic | 35.0% |
| CCAGCAATATTAACATCAAG+TGG | + | chr3_3:47379290-47379309 | None:intergenic | 35.0% | |
| CCACTTGATGTTAATATTGC+TGG | - | chr3_3:47379287-47379306 | Msa0455110:CDS | 35.0% | |
| TCTCAGTCGTAAAGTTGTTA+GGG | + | chr3_3:47379376-47379395 | None:intergenic | 35.0% | |
| TTCTCAGTCGTAAAGTTGTT+AGG | + | chr3_3:47379377-47379396 | None:intergenic | 35.0% | |
| AACTTTACGACTGAGAAGAT+AGG | - | chr3_3:47379380-47379399 | Msa0455110:CDS | 35.0% | |
| ! | GAATTTGAGTTCACTTGAAC+AGG | + | chr3_3:47379623-47379642 | None:intergenic | 35.0% |
| ! | TTTTTCGCAACATCTCCAAA+AGG | + | chr3_3:47379668-47379687 | None:intergenic | 35.0% |
| TGATAACAGAATCCGTTGTT+CGG | - | chr3_3:47379774-47379793 | Msa0455110:CDS | 35.0% | |
| AGTTTGGAAACAAGCAACAA+TGG | + | chr3_3:47379836-47379855 | None:intergenic | 35.0% | |
| TGCCAAATTAAATGTGGAGA+CGG | - | chr3_3:47379883-47379902 | Msa0455110:CDS | 35.0% | |
| !! | AACTTGCTTGTTGATTCTTC+TGG | - | chr3_3:47380067-47380086 | Msa0455110:CDS | 35.0% |
| ATCTTGATTGTGCAAGCATA+TGG | + | chr3_3:47380219-47380238 | None:intergenic | 35.0% | |
| ATCAGGTGATTAGATGAGAA+TGG | + | chr3_3:47380364-47380383 | None:intergenic | 35.0% | |
| TGTACTACCAAAGGACAAAT+TGG | - | chr3_3:47380445-47380464 | Msa0455110:CDS | 35.0% | |
| TTGCTCCAATAATTGCAAGA+GGG | - | chr3_3:47380476-47380495 | Msa0455110:CDS | 35.0% | |
| ATCATCCCTCTTGCAATTAT+TGG | + | chr3_3:47380484-47380503 | None:intergenic | 35.0% | |
| TGATATTGAACGAGCATTAG+AGG | - | chr3_3:47380540-47380559 | Msa0455110:CDS | 35.0% | |
| GCTAATTGATGTTGATGTTG+TGG | - | chr3_3:47380585-47380604 | Msa0455110:CDS | 35.0% | |
| CAAGTCTGCTAATATTGAGA+TGG | - | chr3_3:47380624-47380643 | Msa0455110:CDS | 35.0% | |
| AAGTTATCTGTTGCTCCTTA+TGG | - | chr3_3:47380649-47380668 | Msa0455110:CDS | 35.0% | |
| TGGATTTGAGAAATCAACAC+GGG | - | chr3_3:47380669-47380688 | Msa0455110:CDS | 35.0% | |
| GGAAGAAAATAGTCTGTTGA+AGG | + | chr3_3:47380697-47380716 | None:intergenic | 35.0% | |
| GAGAACCAATTCCAGTTATT+AGG | - | chr3_3:47378952-47378971 | Msa0455110:CDS | 35.0% | |
| CAAACCCTAATAACTGGAAT+TGG | + | chr3_3:47378960-47378979 | None:intergenic | 35.0% | |
| TTCGGTACGTAACAATAGTA+GGG | + | chr3_3:47378992-47379011 | None:intergenic | 35.0% | |
| TTTCGGTACGTAACAATAGT+AGG | + | chr3_3:47378993-47379012 | None:intergenic | 35.0% | |
| ! | TTCTGAAAGCATGTCTCAAA+AGG | + | chr3_3:47379160-47379179 | None:intergenic | 35.0% |
| CCAGCAATATTAACATCAAG+TGG | + | chr3_3:47379290-47379309 | None:intergenic | 35.0% | |
| CCACTTGATGTTAATATTGC+TGG | - | chr3_3:47379287-47379306 | Msa0455110:CDS | 35.0% | |
| TCTCAGTCGTAAAGTTGTTA+GGG | + | chr3_3:47379376-47379395 | None:intergenic | 35.0% | |
| TTCTCAGTCGTAAAGTTGTT+AGG | + | chr3_3:47379377-47379396 | None:intergenic | 35.0% | |
| AACTTTACGACTGAGAAGAT+AGG | - | chr3_3:47379380-47379399 | Msa0455110:CDS | 35.0% | |
| ! | GAATTTGAGTTCACTTGAAC+AGG | + | chr3_3:47379623-47379642 | None:intergenic | 35.0% |
| ! | TTTTTCGCAACATCTCCAAA+AGG | + | chr3_3:47379668-47379687 | None:intergenic | 35.0% |
| TGATAACAGAATCCGTTGTT+CGG | - | chr3_3:47379774-47379793 | Msa0455110:CDS | 35.0% | |
| AGTTTGGAAACAAGCAACAA+TGG | + | chr3_3:47379836-47379855 | None:intergenic | 35.0% | |
| TGCCAAATTAAATGTGGAGA+CGG | - | chr3_3:47379883-47379902 | Msa0455110:CDS | 35.0% | |
| !! | AACTTGCTTGTTGATTCTTC+TGG | - | chr3_3:47380067-47380086 | Msa0455110:CDS | 35.0% |
| ATCTTGATTGTGCAAGCATA+TGG | + | chr3_3:47380219-47380238 | None:intergenic | 35.0% | |
| ATCAGGTGATTAGATGAGAA+TGG | + | chr3_3:47380364-47380383 | None:intergenic | 35.0% | |
| TGTACTACCAAAGGACAAAT+TGG | - | chr3_3:47380445-47380464 | Msa0455110:CDS | 35.0% | |
| TTGCTCCAATAATTGCAAGA+GGG | - | chr3_3:47380476-47380495 | Msa0455110:CDS | 35.0% | |
| ATCATCCCTCTTGCAATTAT+TGG | + | chr3_3:47380484-47380503 | None:intergenic | 35.0% | |
| TGATATTGAACGAGCATTAG+AGG | - | chr3_3:47380540-47380559 | Msa0455110:CDS | 35.0% | |
| GCTAATTGATGTTGATGTTG+TGG | - | chr3_3:47380585-47380604 | Msa0455110:CDS | 35.0% | |
| CAAGTCTGCTAATATTGAGA+TGG | - | chr3_3:47380624-47380643 | Msa0455110:CDS | 35.0% | |
| AAGTTATCTGTTGCTCCTTA+TGG | - | chr3_3:47380649-47380668 | Msa0455110:CDS | 35.0% | |
| TGGATTTGAGAAATCAACAC+GGG | - | chr3_3:47380669-47380688 | Msa0455110:CDS | 35.0% | |
| GGAAGAAAATAGTCTGTTGA+AGG | + | chr3_3:47380697-47380716 | None:intergenic | 35.0% | |
| CATAACCACAACTCTTACCA+CGG | - | chr3_3:47378840-47378859 | Msa0455110:CDS | 40.0% | |
| CAAAGTTCTGTCAGATCAGA+TGG | - | chr3_3:47378866-47378885 | Msa0455110:CDS | 40.0% | |
| !! | GTTCGGATTGTTTCTGTTGT+TGG | + | chr3_3:47378925-47378944 | None:intergenic | 40.0% |
| AACAGAAACAATCCGAACAG+AGG | - | chr3_3:47378927-47378946 | Msa0455110:CDS | 40.0% | |
| AGACATGCTTTCAGAATTGC+AGG | - | chr3_3:47379164-47379183 | Msa0455110:CDS | 40.0% | |
| GAGTTCACTTGAACAGGAAT+GGG | + | chr3_3:47379617-47379636 | None:intergenic | 40.0% | |
| TGAGTTCACTTGAACAGGAA+TGG | + | chr3_3:47379618-47379637 | None:intergenic | 40.0% | |
| ! | ACTCTGTTTGGTCTTCAACA+AGG | + | chr3_3:47379739-47379758 | None:intergenic | 40.0% |
| GATTCTGTTATCACTTGAGC+AGG | + | chr3_3:47379767-47379786 | None:intergenic | 40.0% | |
| ATTTGGCATTCAGTCTCATC+CGG | + | chr3_3:47379871-47379890 | None:intergenic | 40.0% | |
| GCCAAATTAAATGTGGAGAC+GGG | - | chr3_3:47379884-47379903 | Msa0455110:CDS | 40.0% | |
| ACCCGTCTCCACATTTAATT+TGG | + | chr3_3:47379888-47379907 | None:intergenic | 40.0% | |
| ! | AGACGGGTTTGAAAACAAAG+TGG | - | chr3_3:47379900-47379919 | Msa0455110:CDS | 40.0% |
| TCTCCCACATCAGATTTCTT+AGG | + | chr3_3:47379970-47379989 | None:intergenic | 40.0% | |
| !! | TAAGCTTGCTGAACCATTTC+TGG | - | chr3_3:47380096-47380115 | Msa0455110:CDS | 40.0% |
| TGAGTAGCTTTCTCCAGAAA+TGG | + | chr3_3:47380112-47380131 | None:intergenic | 40.0% | |
| ! | TTCTGGAGAAAGCTACTCAA+TGG | - | chr3_3:47380113-47380132 | Msa0455110:CDS | 40.0% |
| AAGCCAACTAGAAACCTGTT+GGG | + | chr3_3:47380274-47380293 | None:intergenic | 40.0% | |
| !!! | AGTTGGCTTGAGCTCATTTT+TGG | - | chr3_3:47380285-47380304 | Msa0455110:CDS | 40.0% |
| ! | CTTAAGCATTGCAGAATGGA+GGG | + | chr3_3:47380325-47380344 | None:intergenic | 40.0% |
| ! | ACTTAAGCATTGCAGAATGG+AGG | + | chr3_3:47380326-47380345 | None:intergenic | 40.0% |
| ! | CTCACTTAAGCATTGCAGAA+TGG | + | chr3_3:47380329-47380348 | None:intergenic | 40.0% |
| CATTCTGCAATGCTTAAGTG+AGG | - | chr3_3:47380327-47380346 | Msa0455110:CDS | 40.0% | |
| ! | CCTTTGGTAGTACATGAGAA+AGG | + | chr3_3:47380439-47380458 | None:intergenic | 40.0% |
| CCTTTCTCATGTACTACCAA+AGG | - | chr3_3:47380436-47380455 | Msa0455110:CDS | 40.0% | |
| TGCATCACCAATTTGTCCTT+TGG | + | chr3_3:47380455-47380474 | None:intergenic | 40.0% | |
| CTTGCTCCAATAATTGCAAG+AGG | - | chr3_3:47380475-47380494 | Msa0455110:CDS | 40.0% | |
| AATTGCAAGAGGGATGATGT+TGG | - | chr3_3:47380486-47380505 | Msa0455110:CDS | 40.0% | |
| ATTGCAAGAGGGATGATGTT+GGG | - | chr3_3:47380487-47380506 | Msa0455110:CDS | 40.0% | |
| CATAACCACAACTCTTACCA+CGG | - | chr3_3:47378840-47378859 | Msa0455110:CDS | 40.0% | |
| CAAAGTTCTGTCAGATCAGA+TGG | - | chr3_3:47378866-47378885 | Msa0455110:CDS | 40.0% | |
| !! | GTTCGGATTGTTTCTGTTGT+TGG | + | chr3_3:47378925-47378944 | None:intergenic | 40.0% |
| AACAGAAACAATCCGAACAG+AGG | - | chr3_3:47378927-47378946 | Msa0455110:CDS | 40.0% | |
| AGACATGCTTTCAGAATTGC+AGG | - | chr3_3:47379164-47379183 | Msa0455110:CDS | 40.0% | |
| GAGTTCACTTGAACAGGAAT+GGG | + | chr3_3:47379617-47379636 | None:intergenic | 40.0% | |
| TGAGTTCACTTGAACAGGAA+TGG | + | chr3_3:47379618-47379637 | None:intergenic | 40.0% | |
| ! | ACTCTGTTTGGTCTTCAACA+AGG | + | chr3_3:47379739-47379758 | None:intergenic | 40.0% |
| GATTCTGTTATCACTTGAGC+AGG | + | chr3_3:47379767-47379786 | None:intergenic | 40.0% | |
| ATTTGGCATTCAGTCTCATC+CGG | + | chr3_3:47379871-47379890 | None:intergenic | 40.0% | |
| GCCAAATTAAATGTGGAGAC+GGG | - | chr3_3:47379884-47379903 | Msa0455110:CDS | 40.0% | |
| ACCCGTCTCCACATTTAATT+TGG | + | chr3_3:47379888-47379907 | None:intergenic | 40.0% | |
| ! | AGACGGGTTTGAAAACAAAG+TGG | - | chr3_3:47379900-47379919 | Msa0455110:CDS | 40.0% |
| TCTCCCACATCAGATTTCTT+AGG | + | chr3_3:47379970-47379989 | None:intergenic | 40.0% | |
| !! | TAAGCTTGCTGAACCATTTC+TGG | - | chr3_3:47380096-47380115 | Msa0455110:CDS | 40.0% |
| TGAGTAGCTTTCTCCAGAAA+TGG | + | chr3_3:47380112-47380131 | None:intergenic | 40.0% | |
| ! | TTCTGGAGAAAGCTACTCAA+TGG | - | chr3_3:47380113-47380132 | Msa0455110:CDS | 40.0% |
| AAGCCAACTAGAAACCTGTT+GGG | + | chr3_3:47380274-47380293 | None:intergenic | 40.0% | |
| !!! | AGTTGGCTTGAGCTCATTTT+TGG | - | chr3_3:47380285-47380304 | Msa0455110:CDS | 40.0% |
| ! | CTTAAGCATTGCAGAATGGA+GGG | + | chr3_3:47380325-47380344 | None:intergenic | 40.0% |
| ! | ACTTAAGCATTGCAGAATGG+AGG | + | chr3_3:47380326-47380345 | None:intergenic | 40.0% |
| ! | CTCACTTAAGCATTGCAGAA+TGG | + | chr3_3:47380329-47380348 | None:intergenic | 40.0% |
| CATTCTGCAATGCTTAAGTG+AGG | - | chr3_3:47380327-47380346 | Msa0455110:CDS | 40.0% | |
| ! | CCTTTGGTAGTACATGAGAA+AGG | + | chr3_3:47380439-47380458 | None:intergenic | 40.0% |
| CCTTTCTCATGTACTACCAA+AGG | - | chr3_3:47380436-47380455 | Msa0455110:CDS | 40.0% | |
| TGCATCACCAATTTGTCCTT+TGG | + | chr3_3:47380455-47380474 | None:intergenic | 40.0% | |
| CTTGCTCCAATAATTGCAAG+AGG | - | chr3_3:47380475-47380494 | Msa0455110:CDS | 40.0% | |
| AATTGCAAGAGGGATGATGT+TGG | - | chr3_3:47380486-47380505 | Msa0455110:CDS | 40.0% | |
| ATTGCAAGAGGGATGATGTT+GGG | - | chr3_3:47380487-47380506 | Msa0455110:CDS | 40.0% | |
| !! | CGTCATAAGTTGATCTCCCA+TGG | + | chr3_3:47378803-47378822 | None:intergenic | 45.0% |
| TGGGAGATCAACTTATGACG+AGG | - | chr3_3:47378803-47378822 | Msa0455110:CDS | 45.0% | |
| GGGAGATCAACTTATGACGA+GGG | - | chr3_3:47378804-47378823 | Msa0455110:CDS | 45.0% | |
| GGTAAGAGTTGTGGTTATGC+CGG | + | chr3_3:47378839-47378858 | None:intergenic | 45.0% | |
| AGAAACAATCCGAACAGAGG+AGG | - | chr3_3:47378930-47378949 | Msa0455110:CDS | 45.0% | |
| ! | ATTGGTTCTCCTCCTCTGTT+CGG | + | chr3_3:47378942-47378961 | None:intergenic | 45.0% |
| ! | GAAAGCATGTCTCAAAAGGC+CGG | + | chr3_3:47379156-47379175 | None:intergenic | 45.0% |
| TAACTCGTGTTCGCGTAAGA+TGG | - | chr3_3:47379187-47379206 | Msa0455110:CDS | 45.0% | |
| ! | GAGAAAGCACAAAGTGTGCT+TGG | - | chr3_3:47379458-47379477 | Msa0455110:CDS | 45.0% |
| ACAAAGTGTGCTTGGTACTG+TGG | - | chr3_3:47379466-47379485 | Msa0455110:CDS | 45.0% | |
| !! | ACTTGAACAGGAATGGGTTG+TGG | + | chr3_3:47379611-47379630 | None:intergenic | 45.0% |
| ! | GAGCTATTGGATCCACCTTT+TGG | - | chr3_3:47379650-47379669 | Msa0455110:CDS | 45.0% |
| TTCGCAACATCTCCAAAAGG+TGG | + | chr3_3:47379665-47379684 | None:intergenic | 45.0% | |
| GAAACGAGTGATGCAGTTAC+TGG | - | chr3_3:47379713-47379732 | Msa0455110:CDS | 45.0% | |
| CAGAATCCGTTGTTCGGAAT+TGG | - | chr3_3:47379780-47379799 | Msa0455110:CDS | 45.0% | |
| ACCTAGCCAATTCCGAACAA+CGG | + | chr3_3:47379789-47379808 | None:intergenic | 45.0% | |
| CCAAACTTGCAGCAATAGAC+CGG | - | chr3_3:47379849-47379868 | Msa0455110:CDS | 45.0% | |
| TCAATGAGTGCGTTGTATCG+AGG | - | chr3_3:47379932-47379951 | Msa0455110:CDS | 45.0% | |
| TGCGCCTAAGAAATCTGATG+TGG | - | chr3_3:47379963-47379982 | Msa0455110:CDS | 45.0% | |
| GCGCCTAAGAAATCTGATGT+GGG | - | chr3_3:47379964-47379983 | Msa0455110:CDS | 45.0% | |
| TCAGATGTTACGATCCCAAC+AGG | - | chr3_3:47380257-47380276 | Msa0455110:CDS | 45.0% | |
| !! | GATCCCAACAGGTTTCTAGT+TGG | - | chr3_3:47380268-47380287 | Msa0455110:CDS | 45.0% |
| CAAGCCAACTAGAAACCTGT+TGG | + | chr3_3:47380275-47380294 | None:intergenic | 45.0% | |
| TGGACGACATCAAGTGGTTT+CGG | + | chr3_3:47380397-47380416 | None:intergenic | 45.0% | |
| GCAAATTGAGTGACGATGTG+TGG | + | chr3_3:47380417-47380436 | None:intergenic | 45.0% | |
| !! | GAGCATTAGAGGCACCTAAA+GGG | - | chr3_3:47380551-47380570 | Msa0455110:CDS | 45.0% |
| !! | AGCATTAGAGGCACCTAAAG+GGG | - | chr3_3:47380552-47380571 | Msa0455110:CDS | 45.0% |
| !! | CGTCATAAGTTGATCTCCCA+TGG | + | chr3_3:47378803-47378822 | None:intergenic | 45.0% |
| TGGGAGATCAACTTATGACG+AGG | - | chr3_3:47378803-47378822 | Msa0455110:CDS | 45.0% | |
| GGGAGATCAACTTATGACGA+GGG | - | chr3_3:47378804-47378823 | Msa0455110:CDS | 45.0% | |
| GGTAAGAGTTGTGGTTATGC+CGG | + | chr3_3:47378839-47378858 | None:intergenic | 45.0% | |
| AGAAACAATCCGAACAGAGG+AGG | - | chr3_3:47378930-47378949 | Msa0455110:CDS | 45.0% | |
| ! | ATTGGTTCTCCTCCTCTGTT+CGG | + | chr3_3:47378942-47378961 | None:intergenic | 45.0% |
| ! | GAAAGCATGTCTCAAAAGGC+CGG | + | chr3_3:47379156-47379175 | None:intergenic | 45.0% |
| TAACTCGTGTTCGCGTAAGA+TGG | - | chr3_3:47379187-47379206 | Msa0455110:CDS | 45.0% | |
| ! | GAGAAAGCACAAAGTGTGCT+TGG | - | chr3_3:47379458-47379477 | Msa0455110:CDS | 45.0% |
| ACAAAGTGTGCTTGGTACTG+TGG | - | chr3_3:47379466-47379485 | Msa0455110:CDS | 45.0% | |
| !! | ACTTGAACAGGAATGGGTTG+TGG | + | chr3_3:47379611-47379630 | None:intergenic | 45.0% |
| ! | GAGCTATTGGATCCACCTTT+TGG | - | chr3_3:47379650-47379669 | Msa0455110:CDS | 45.0% |
| TTCGCAACATCTCCAAAAGG+TGG | + | chr3_3:47379665-47379684 | None:intergenic | 45.0% | |
| GAAACGAGTGATGCAGTTAC+TGG | - | chr3_3:47379713-47379732 | Msa0455110:CDS | 45.0% | |
| CAGAATCCGTTGTTCGGAAT+TGG | - | chr3_3:47379780-47379799 | Msa0455110:CDS | 45.0% | |
| ACCTAGCCAATTCCGAACAA+CGG | + | chr3_3:47379789-47379808 | None:intergenic | 45.0% | |
| CCAAACTTGCAGCAATAGAC+CGG | - | chr3_3:47379849-47379868 | Msa0455110:CDS | 45.0% | |
| TCAATGAGTGCGTTGTATCG+AGG | - | chr3_3:47379932-47379951 | Msa0455110:CDS | 45.0% | |
| TGCGCCTAAGAAATCTGATG+TGG | - | chr3_3:47379963-47379982 | Msa0455110:CDS | 45.0% | |
| GCGCCTAAGAAATCTGATGT+GGG | - | chr3_3:47379964-47379983 | Msa0455110:CDS | 45.0% | |
| TCAGATGTTACGATCCCAAC+AGG | - | chr3_3:47380257-47380276 | Msa0455110:CDS | 45.0% | |
| !! | GATCCCAACAGGTTTCTAGT+TGG | - | chr3_3:47380268-47380287 | Msa0455110:CDS | 45.0% |
| CAAGCCAACTAGAAACCTGT+TGG | + | chr3_3:47380275-47380294 | None:intergenic | 45.0% | |
| TGGACGACATCAAGTGGTTT+CGG | + | chr3_3:47380397-47380416 | None:intergenic | 45.0% | |
| GCAAATTGAGTGACGATGTG+TGG | + | chr3_3:47380417-47380436 | None:intergenic | 45.0% | |
| !! | GAGCATTAGAGGCACCTAAA+GGG | - | chr3_3:47380551-47380570 | Msa0455110:CDS | 45.0% |
| !! | AGCATTAGAGGCACCTAAAG+GGG | - | chr3_3:47380552-47380571 | Msa0455110:CDS | 45.0% |
| TGATGCCGTGGTAAGAGTTG+TGG | + | chr3_3:47378848-47378867 | None:intergenic | 50.0% | |
| CTGACAGAACTTTGATGCCG+TGG | + | chr3_3:47378860-47378879 | None:intergenic | 50.0% | |
| TGTCAGATCAGATGGCTACG+TGG | - | chr3_3:47378874-47378893 | Msa0455110:CDS | 50.0% | |
| ATGTCTCAAAAGGCCGGTCA+AGG | + | chr3_3:47379150-47379169 | None:intergenic | 50.0% | |
| ACTGCATCTCTCACTTCTCC+AGG | + | chr3_3:47379566-47379585 | None:intergenic | 50.0% | |
| GAGCAGGAACAGACTCTGTT+TGG | + | chr3_3:47379751-47379770 | None:intergenic | 50.0% | |
| TCCGTTGTTCGGAATTGGCT+AGG | - | chr3_3:47379785-47379804 | Msa0455110:CDS | 50.0% | |
| CCGGTCTATTGCTGCAAGTT+TGG | + | chr3_3:47379852-47379871 | None:intergenic | 50.0% | |
| ACGACATCAAGTGGTTTCGG+TGG | + | chr3_3:47380394-47380413 | None:intergenic | 50.0% | |
| GATGTGTGGACGACATCAAG+TGG | + | chr3_3:47380403-47380422 | None:intergenic | 50.0% | |
| !! | CGAGCATTAGAGGCACCTAA+AGG | - | chr3_3:47380550-47380569 | Msa0455110:CDS | 50.0% |
| AGCTCCATCTTCACCCCTTT+AGG | + | chr3_3:47380568-47380587 | None:intergenic | 50.0% | |
| GATGTTGATGTTGTGGCAGC+TGG | - | chr3_3:47380592-47380611 | Msa0455110:CDS | 50.0% | |
| TGATGCCGTGGTAAGAGTTG+TGG | + | chr3_3:47378848-47378867 | None:intergenic | 50.0% | |
| CTGACAGAACTTTGATGCCG+TGG | + | chr3_3:47378860-47378879 | None:intergenic | 50.0% | |
| TGTCAGATCAGATGGCTACG+TGG | - | chr3_3:47378874-47378893 | Msa0455110:CDS | 50.0% | |
| ATGTCTCAAAAGGCCGGTCA+AGG | + | chr3_3:47379150-47379169 | None:intergenic | 50.0% | |
| ACTGCATCTCTCACTTCTCC+AGG | + | chr3_3:47379566-47379585 | None:intergenic | 50.0% | |
| GAGCAGGAACAGACTCTGTT+TGG | + | chr3_3:47379751-47379770 | None:intergenic | 50.0% | |
| TCCGTTGTTCGGAATTGGCT+AGG | - | chr3_3:47379785-47379804 | Msa0455110:CDS | 50.0% | |
| CCGGTCTATTGCTGCAAGTT+TGG | + | chr3_3:47379852-47379871 | None:intergenic | 50.0% | |
| ACGACATCAAGTGGTTTCGG+TGG | + | chr3_3:47380394-47380413 | None:intergenic | 50.0% | |
| GATGTGTGGACGACATCAAG+TGG | + | chr3_3:47380403-47380422 | None:intergenic | 50.0% | |
| !! | CGAGCATTAGAGGCACCTAA+AGG | - | chr3_3:47380550-47380569 | Msa0455110:CDS | 50.0% |
| AGCTCCATCTTCACCCCTTT+AGG | + | chr3_3:47380568-47380587 | None:intergenic | 50.0% | |
| GATGTTGATGTTGTGGCAGC+TGG | - | chr3_3:47380592-47380611 | Msa0455110:CDS | 50.0% | |
| ATGACGAGGGCAGAGTTTGC+CGG | - | chr3_3:47378817-47378836 | Msa0455110:CDS | 55.0% | |
| GATGGCTACGTGGACAGCTA+AGG | - | chr3_3:47378884-47378903 | Msa0455110:CDS | 55.0% | |
| GCATTGCAGAATGGAGGGAG+AGG | + | chr3_3:47380320-47380339 | None:intergenic | 55.0% | |
| GTTTCGGTGGCAGTGCAATC+AGG | + | chr3_3:47380381-47380400 | None:intergenic | 55.0% | |
| GGCACCTAAAGGGGTGAAGA+TGG | - | chr3_3:47380561-47380580 | Msa0455110:CDS | 55.0% | |
| ATGACGAGGGCAGAGTTTGC+CGG | - | chr3_3:47378817-47378836 | Msa0455110:CDS | 55.0% | |
| GATGGCTACGTGGACAGCTA+AGG | - | chr3_3:47378884-47378903 | Msa0455110:CDS | 55.0% | |
| GCATTGCAGAATGGAGGGAG+AGG | + | chr3_3:47380320-47380339 | None:intergenic | 55.0% | |
| GTTTCGGTGGCAGTGCAATC+AGG | + | chr3_3:47380381-47380400 | None:intergenic | 55.0% | |
| GGCACCTAAAGGGGTGAAGA+TGG | - | chr3_3:47380561-47380580 | Msa0455110:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 47378792 | 47380777 | 47378792 | ID=Msa0455110;Name=Msa0455110 |
| chr3_3 | mRNA | 47378792 | 47380777 | 47378792 | ID=Msa0455110-mRNA-1;Parent=Msa0455110;Name=Msa0455110-mRNA-1;_AED=0.51;_eAED=0.51;_QI=0|-1|0|1|-1|1|1|0|661 |
| chr3_3 | exon | 47378792 | 47380777 | 47378792 | ID=Msa0455110-mRNA-1:exon:8827;Parent=Msa0455110-mRNA-1 |
| chr3_3 | CDS | 47378792 | 47380777 | 47378792 | ID=Msa0455110-mRNA-1:cds;Parent=Msa0455110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
