Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456110 | XP_003600453.1 | 79.930 | 284 | 48 | 1 | 18 | 292 | 1 | 284 | 9.60e-166 | 471 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456110 | sp|Q8L3W1|VRN1_ARATH | 26.765 | 340 | 174 | 12 | 25 | 293 | 1 | 336 | 1.41e-26 | 109 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456110 | G8A2Z4 | 79.930 | 284 | 48 | 1 | 18 | 292 | 1 | 284 | 4.59e-166 | 471 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0456110 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456110 | MtrunA17_Chr3g0103181 | 72.183 | 284 | 65 | 4 | 18 | 292 | 1 | 279 | 7.35e-144 | 405 |
| Msa0456110 | MtrunA17_Chr3g0103191 | 80.952 | 252 | 37 | 3 | 18 | 259 | 1 | 251 | 5.89e-143 | 402 |
| Msa0456110 | MtrunA17_Chr3g0103171 | 66.794 | 262 | 75 | 3 | 42 | 292 | 5 | 265 | 2.40e-120 | 345 |
| Msa0456110 | MtrunA17_Chr3g0103201 | 76.364 | 220 | 43 | 1 | 82 | 292 | 1 | 220 | 1.64e-118 | 339 |
| Msa0456110 | MtrunA17_Chr3g0103151 | 72.222 | 162 | 35 | 2 | 18 | 170 | 1 | 161 | 3.74e-79 | 237 |
| Msa0456110 | MtrunA17_Chr3g0103161 | 68.800 | 125 | 39 | 0 | 171 | 295 | 2 | 126 | 1.54e-57 | 181 |
| Msa0456110 | MtrunA17_Chr1g0163071 | 33.788 | 293 | 145 | 8 | 43 | 293 | 2 | 287 | 1.18e-43 | 151 |
| Msa0456110 | MtrunA17_Chr8g0390841 | 32.440 | 336 | 164 | 12 | 1 | 293 | 16 | 331 | 3.35e-42 | 152 |
| Msa0456110 | MtrunA17_Chr8g0390841 | 52.308 | 65 | 30 | 1 | 229 | 293 | 455 | 518 | 4.92e-14 | 72.0 |
| Msa0456110 | MtrunA17_Chr1g0208771 | 33.223 | 301 | 140 | 12 | 38 | 295 | 10 | 292 | 1.50e-37 | 138 |
| Msa0456110 | MtrunA17_Chr1g0208771 | 36.154 | 130 | 75 | 4 | 171 | 293 | 330 | 458 | 8.22e-14 | 71.2 |
| Msa0456110 | MtrunA17_Chr7g0233561 | 29.667 | 300 | 181 | 8 | 24 | 293 | 13 | 312 | 2.01e-36 | 132 |
| Msa0456110 | MtrunA17_Chr3g0131891 | 31.379 | 290 | 175 | 9 | 26 | 293 | 16 | 303 | 2.34e-34 | 127 |
| Msa0456110 | MtrunA17_Chr7g0233521 | 31.461 | 267 | 164 | 5 | 42 | 293 | 1 | 263 | 1.96e-31 | 118 |
| Msa0456110 | MtrunA17_Chr1g0163181 | 28.523 | 298 | 159 | 11 | 31 | 291 | 11 | 291 | 4.60e-28 | 112 |
| Msa0456110 | MtrunA17_Chr7g0233541 | 30.175 | 285 | 159 | 9 | 43 | 293 | 2 | 280 | 1.17e-27 | 108 |
| Msa0456110 | MtrunA17_Chr4g0067431 | 29.605 | 304 | 171 | 13 | 27 | 292 | 13 | 311 | 1.72e-27 | 108 |
| Msa0456110 | MtrunA17_Chr7g0233531 | 31.022 | 274 | 156 | 6 | 42 | 293 | 1 | 263 | 7.65e-27 | 106 |
| Msa0456110 | MtrunA17_Chr1g0163251 | 28.723 | 282 | 176 | 8 | 29 | 294 | 9 | 281 | 9.80e-27 | 108 |
| Msa0456110 | MtrunA17_Chr1g0163261 | 24.912 | 285 | 192 | 6 | 26 | 294 | 6 | 284 | 7.72e-24 | 98.6 |
| Msa0456110 | MtrunA17_Chr7g0233571 | 30.222 | 225 | 113 | 5 | 21 | 211 | 2 | 216 | 9.62e-24 | 96.7 |
| Msa0456110 | MtrunA17_Chr5g0419201 | 35.032 | 157 | 76 | 5 | 29 | 166 | 16 | 165 | 1.17e-22 | 92.8 |
| Msa0456110 | MtrunA17_Chr1g0163201 | 26.056 | 284 | 164 | 10 | 42 | 294 | 18 | 286 | 1.57e-21 | 93.6 |
| Msa0456110 | MtrunA17_Chr1g0163231 | 25.926 | 297 | 174 | 11 | 26 | 296 | 6 | 282 | 6.04e-21 | 90.5 |
| Msa0456110 | MtrunA17_Chr1g0163131 | 26.948 | 308 | 176 | 11 | 19 | 289 | 8 | 303 | 6.60e-21 | 90.5 |
| Msa0456110 | MtrunA17_Chr3g0077451 | 27.138 | 269 | 138 | 7 | 41 | 294 | 10 | 235 | 9.62e-20 | 86.3 |
| Msa0456110 | MtrunA17_Chr5g0429931 | 27.306 | 271 | 148 | 7 | 38 | 294 | 8 | 243 | 1.41e-19 | 85.9 |
| Msa0456110 | MtrunA17_Chr1g0163221 | 28.522 | 291 | 174 | 11 | 27 | 292 | 9 | 290 | 6.04e-19 | 85.9 |
| Msa0456110 | MtrunA17_Chr1g0163191 | 33.043 | 115 | 68 | 2 | 29 | 136 | 9 | 121 | 1.60e-18 | 80.9 |
| Msa0456110 | MtrunA17_Chr1g0171611 | 23.208 | 293 | 175 | 8 | 26 | 296 | 6 | 270 | 2.87e-18 | 83.2 |
| Msa0456110 | MtrunA17_Chr1g0162441 | 35.507 | 138 | 69 | 4 | 25 | 142 | 1 | 138 | 4.34e-18 | 84.0 |
| Msa0456110 | MtrunA17_Chr4g0033961 | 33.333 | 132 | 70 | 3 | 29 | 142 | 6 | 137 | 2.85e-16 | 78.6 |
| Msa0456110 | MtrunA17_Chr4g0033961 | 31.818 | 132 | 77 | 6 | 169 | 293 | 263 | 388 | 3.39e-11 | 63.5 |
| Msa0456110 | MtrunA17_Chr1g0154161 | 24.742 | 291 | 181 | 9 | 30 | 294 | 30 | 308 | 8.03e-16 | 76.6 |
| Msa0456110 | MtrunA17_Chr1g0163241 | 35.652 | 115 | 62 | 3 | 32 | 136 | 14 | 126 | 1.31e-15 | 73.2 |
| Msa0456110 | MtrunA17_Chr1g0162411 | 38.318 | 107 | 52 | 4 | 24 | 119 | 3 | 106 | 2.40e-14 | 72.8 |
| Msa0456110 | MtrunA17_Chr3g0077411 | 25.084 | 299 | 171 | 9 | 16 | 292 | 249 | 516 | 9.08e-14 | 71.2 |
| Msa0456110 | MtrunA17_Chr3g0077411 | 25.784 | 287 | 142 | 9 | 14 | 286 | 13 | 242 | 5.40e-12 | 65.9 |
| Msa0456110 | MtrunA17_Chr6g0467351 | 27.854 | 219 | 114 | 6 | 27 | 211 | 13 | 221 | 1.23e-13 | 68.9 |
| Msa0456110 | MtrunA17_Chr1g0163061 | 40.385 | 104 | 50 | 3 | 25 | 116 | 11 | 114 | 1.43e-13 | 69.3 |
| Msa0456110 | MtrunA17_Chr1g0154131 | 24.638 | 276 | 180 | 8 | 39 | 289 | 194 | 466 | 1.29e-12 | 67.8 |
| Msa0456110 | MtrunA17_Chr1g0154071 | 23.054 | 334 | 187 | 13 | 30 | 296 | 157 | 487 | 8.19e-12 | 65.5 |
| Msa0456110 | MtrunA17_Chr3g0077381 | 29.565 | 115 | 72 | 1 | 30 | 135 | 23 | 137 | 2.29e-11 | 63.9 |
| Msa0456110 | MtrunA17_Chr3g0077421 | 25.322 | 233 | 121 | 7 | 74 | 293 | 4 | 196 | 2.42e-11 | 62.0 |
| Msa0456110 | MtrunA17_Chr3g0077441 | 25.322 | 233 | 121 | 7 | 74 | 293 | 4 | 196 | 2.42e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456110 | AT3G18990.1 | 26.765 | 340 | 174 | 12 | 25 | 293 | 1 | 336 | 1.44e-27 | 109 |
| Msa0456110 | AT3G18990.2 | 26.765 | 340 | 174 | 12 | 25 | 293 | 1 | 336 | 2.38e-27 | 109 |
| Msa0456110 | AT1G49475.1 | 39.286 | 140 | 61 | 6 | 28 | 145 | 33 | 170 | 4.63e-15 | 72.4 |
| Msa0456110 | AT4G01580.1 | 32.258 | 155 | 79 | 6 | 11 | 153 | 19 | 159 | 6.44e-13 | 66.6 |
| Msa0456110 | AT4G33280.1 | 23.746 | 299 | 194 | 10 | 29 | 295 | 25 | 321 | 8.86e-13 | 68.2 |
| Msa0456110 | AT1G49480.3 | 27.132 | 129 | 86 | 4 | 169 | 293 | 97 | 221 | 8.66e-12 | 63.9 |
| Msa0456110 | AT1G49480.1 | 27.132 | 129 | 86 | 4 | 169 | 293 | 97 | 221 | 8.66e-12 | 63.9 |
| Msa0456110 | AT1G49480.2 | 27.132 | 129 | 86 | 4 | 169 | 293 | 97 | 221 | 8.66e-12 | 63.9 |
| Msa0456110 | AT3G18960.1 | 33.333 | 117 | 60 | 3 | 11 | 116 | 19 | 128 | 3.23e-11 | 62.0 |
| Msa0456110 | AT3G18960.2 | 33.333 | 117 | 60 | 3 | 11 | 116 | 19 | 128 | 4.41e-11 | 61.6 |
Find 61 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTTTGATGTACACATATT+TGG | 0.204865 | 3_3:+49505641 | Msa0456110:CDS |
| TGATGAATCAGTTGAGATTT+TGG | 0.207341 | 3_3:+49505742 | Msa0456110:CDS |
| GCACTAAATGGAAAGTTTAT+TGG | 0.220986 | 3_3:+49505505 | Msa0456110:CDS |
| CGCCTCCTGATGGCACTAAA+TGG | 0.261546 | 3_3:+49505493 | Msa0456110:CDS |
| AAAGAACTTCATCAATAAAT+TGG | 0.285020 | 3_3:+49506101 | Msa0456110:CDS |
| CAATCCTTTGAAGATTAGTT+TGG | 0.289306 | 3_3:-49505150 | None:intergenic |
| CGACCTCATAAGAAAGTTAG+AGG | 0.299960 | 3_3:+49505818 | Msa0456110:CDS |
| TGACCATCTTCTATATGATT+AGG | 0.306797 | 3_3:-49506199 | None:intergenic |
| TCAGGAGGCGTGAGCAATAC+TGG | 0.322510 | 3_3:-49505480 | None:intergenic |
| TCAATAACCCCTTTAAAATC+TGG | 0.344940 | 3_3:-49506676 | None:intergenic |
| ACTGATAAACAAGAAAGATT+TGG | 0.358474 | 3_3:+49506858 | Msa0456110:CDS |
| TGGTGAGATTTGGTTTGAAA+AGG | 0.373936 | 3_3:+49505539 | Msa0456110:CDS |
| TTTACTGAAAATTACTCTCT+TGG | 0.379721 | 3_3:+49505573 | Msa0456110:CDS |
| CGTTGTTACGAAGGCAGATA+TGG | 0.391650 | 3_3:+49506760 | Msa0456110:CDS |
| AGAATGTGATGATGCAGATT+AGG | 0.440524 | 3_3:+49506710 | Msa0456110:CDS |
| ACTTTCCATTTAGTGCCATC+AGG | 0.440549 | 3_3:-49505498 | None:intergenic |
| GGAGAATGATCTTGAAGAAA+CGG | 0.453028 | 3_3:-49505129 | None:intergenic |
| AGTGAGAGTGGACTGGAATC+CGG | 0.455835 | 3_3:+49506817 | Msa0456110:CDS |
| TTTCCTCTAGCCATGGATGA+TGG | 0.459112 | 3_3:-49505091 | None:intergenic |
| AAACCTCTAACTTTCTTATG+AGG | 0.460951 | 3_3:-49505821 | None:intergenic |
| AGATTTGGTTTGAAAAGGGT+TGG | 0.470784 | 3_3:+49505544 | Msa0456110:CDS |
| AAATACCAACCAAGTTTACT+AGG | 0.481618 | 3_3:+49505433 | Msa0456110:CDS |
| GCCAAGGGATTCTAGAGCTC+AGG | 0.489379 | 3_3:+49506123 | Msa0456110:CDS |
| GGTGAGATTTGGTTTGAAAA+GGG | 0.495938 | 3_3:+49505540 | Msa0456110:CDS |
| TCCATGTCTCCTAGTAAACT+TGG | 0.501582 | 3_3:-49505442 | None:intergenic |
| GAGAATGATCTTGAAGAAAC+GGG | 0.504618 | 3_3:-49505128 | None:intergenic |
| AAACCTAATCATATAGAAGA+TGG | 0.505339 | 3_3:+49506196 | Msa0456110:CDS |
| TTCTCCAAACTAATCTTCAA+AGG | 0.509962 | 3_3:+49505146 | Msa0456110:CDS |
| TATGGTCGTCGCCTTTCCGC+GGG | 0.515090 | 3_3:+49506778 | Msa0456110:CDS |
| TGATGATGCAGATTAGGAAA+AGG | 0.518118 | 3_3:+49506716 | Msa0456110:CDS |
| CTTCATCAATAAATTGGCCA+AGG | 0.530612 | 3_3:+49506107 | Msa0456110:CDS |
| GTCGTCGCCTTTCCGCGGGT+TGG | 0.534805 | 3_3:+49506782 | Msa0456110:CDS |
| CTAACTTTCTTATGAGGTCG+AGG | 0.536777 | 3_3:-49505815 | None:intergenic |
| TCATATAGAAGATGGTCAGC+TGG | 0.536880 | 3_3:+49506204 | Msa0456110:CDS |
| TCCTGAGCTCTAGAATCCCT+TGG | 0.542805 | 3_3:-49506124 | None:intergenic |
| TAAAGGGGTTATTGAGAACA+AGG | 0.546960 | 3_3:+49506684 | Msa0456110:CDS |
| TTCAAAGACACAAACATCTC+CGG | 0.550564 | 3_3:-49506836 | None:intergenic |
| TGAGGTCGAGGAGAAACTAA+AGG | 0.562476 | 3_3:-49505803 | None:intergenic |
| ATATGGTCGTCGCCTTTCCG+CGG | 0.564678 | 3_3:+49506777 | Msa0456110:CDS |
| GTATTGCTCACGCCTCCTGA+TGG | 0.573817 | 3_3:+49505483 | Msa0456110:CDS |
| ATGATCTTGAAGAAACGGGT+GGG | 0.581691 | 3_3:-49505124 | None:intergenic |
| GATAGAATTTCCTCTAGCCA+TGG | 0.581834 | 3_3:-49505098 | None:intergenic |
| TGATCTTGAAGAAACGGGTG+GGG | 0.582119 | 3_3:-49505123 | None:intergenic |
| TGAATGGCTTAATCGGAAGA+AGG | 0.588393 | 3_3:+49505766 | Msa0456110:CDS |
| ACAACGACCAACCCGCGGAA+AGG | 0.589106 | 3_3:-49506789 | None:intergenic |
| ACTTCAAAATCCATCATCCA+TGG | 0.591348 | 3_3:+49505081 | Msa0456110:CDS |
| TTCATCAATAAATTGGCCAA+GGG | 0.591832 | 3_3:+49506108 | Msa0456110:CDS |
| TGTCTCCTAGTAAACTTGGT+TGG | 0.596803 | 3_3:-49505438 | None:intergenic |
| AAATTACTCCGTTGTTACGA+AGG | 0.605850 | 3_3:+49506751 | Msa0456110:CDS |
| GAAAATTACTCTCTTGGACA+TGG | 0.607063 | 3_3:+49505579 | Msa0456110:CDS |
| TCGTTGTTTGCAAGTGAGAG+TGG | 0.607669 | 3_3:+49506805 | Msa0456110:CDS |
| GTTTGCAAGTGAGAGTGGAC+TGG | 0.609003 | 3_3:+49506810 | Msa0456110:CDS |
| TGCAGATTAGGAAAAGGTCA+TGG | 0.613419 | 3_3:+49506722 | Msa0456110:CDS |
| ACCAAGTTTACTAGGAGACA+TGG | 0.614012 | 3_3:+49505441 | Msa0456110:CDS |
| TTCCATTTAGTGCCATCAGG+AGG | 0.614130 | 3_3:-49505495 | None:intergenic |
| AATCCATCATCCATGGCTAG+AGG | 0.621840 | 3_3:+49505088 | Msa0456110:CDS |
| TCTTGAAGAAACGGGTGGGG+AGG | 0.630367 | 3_3:-49505120 | None:intergenic |
| AATGATCTTGAAGAAACGGG+TGG | 0.640742 | 3_3:-49505125 | None:intergenic |
| TGCAAACAACGACCAACCCG+CGG | 0.655127 | 3_3:-49506794 | None:intergenic |
| ATCGGAAGAAGGCTAAACAA+AGG | 0.659932 | 3_3:+49505777 | Msa0456110:CDS |
| CATATCTGCCTTCGTAACAA+CGG | 0.666214 | 3_3:-49506759 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCTTTCATTTTATTTAA+TGG | + | chr3_3:49505860-49505879 | Msa0456110:intron | 10.0% |
| !!! | TTTCTTTCATTTTATTTAAT+GGG | + | chr3_3:49505861-49505880 | Msa0456110:intron | 10.0% |
| !!! | TTCTATATTTTTTTTTGAAT+CGG | - | chr3_3:49506546-49506565 | None:intergenic | 10.0% |
| !!! | TTTTCTTTCATTTTATTTAA+TGG | + | chr3_3:49505860-49505879 | Msa0456110:intron | 10.0% |
| !!! | TTTCTTTCATTTTATTTAAT+GGG | + | chr3_3:49505861-49505880 | Msa0456110:intron | 10.0% |
| !!! | TTCTATATTTTTTTTTGAAT+CGG | - | chr3_3:49506546-49506565 | None:intergenic | 10.0% |
| !! | TTAAAGTAAATAGAACTAAT+AGG | - | chr3_3:49505188-49505207 | None:intergenic | 15.0% |
| !! | TCAAAAAAAAATATAGAAGA+TGG | + | chr3_3:49506548-49506567 | Msa0456110:intron | 15.0% |
| !! | TAAATTATGATGATTGATAA+TGG | + | chr3_3:49506632-49506651 | Msa0456110:intron | 15.0% |
| !! | TTAAAGTAAATAGAACTAAT+AGG | - | chr3_3:49505188-49505207 | None:intergenic | 15.0% |
| !! | TCAAAAAAAAATATAGAAGA+TGG | + | chr3_3:49506548-49506567 | Msa0456110:intron | 15.0% |
| !! | TAAATTATGATGATTGATAA+TGG | + | chr3_3:49506632-49506651 | Msa0456110:intron | 15.0% |
| !!! | AAATTTCTAGTGCTAATATT+TGG | - | chr3_3:49505298-49505317 | None:intergenic | 20.0% |
| !! | GTTTATTGGAAAAAAATCAA+TGG | + | chr3_3:49505519-49505538 | Msa0456110:CDS | 20.0% |
| !! | AAAGAACTTCATCAATAAAT+TGG | + | chr3_3:49506101-49506120 | Msa0456110:CDS | 20.0% |
| !! | TTTATGAGAATTGTGAAAAA+AGG | - | chr3_3:49506178-49506197 | None:intergenic | 20.0% |
| !! | GAGAAAAAAAAAATTACAAG+GGG | - | chr3_3:49506472-49506491 | None:intergenic | 20.0% |
| !! | GGAGAAAAAAAAAATTACAA+GGG | - | chr3_3:49506473-49506492 | None:intergenic | 20.0% |
| !! | AGGAGAAAAAAAAAATTACA+AGG | - | chr3_3:49506474-49506493 | None:intergenic | 20.0% |
| !!! | AAATTTCTAGTGCTAATATT+TGG | - | chr3_3:49505298-49505317 | None:intergenic | 20.0% |
| !! | GTTTATTGGAAAAAAATCAA+TGG | + | chr3_3:49505519-49505538 | Msa0456110:CDS | 20.0% |
| !! | AAAGAACTTCATCAATAAAT+TGG | + | chr3_3:49506101-49506120 | Msa0456110:CDS | 20.0% |
| !! | TTTATGAGAATTGTGAAAAA+AGG | - | chr3_3:49506178-49506197 | None:intergenic | 20.0% |
| !! | GAGAAAAAAAAAATTACAAG+GGG | - | chr3_3:49506472-49506491 | None:intergenic | 20.0% |
| !! | GGAGAAAAAAAAAATTACAA+GGG | - | chr3_3:49506473-49506492 | None:intergenic | 20.0% |
| !! | AGGAGAAAAAAAAAATTACA+AGG | - | chr3_3:49506474-49506493 | None:intergenic | 20.0% |
| !!! | ACTTTTTTATTAGTGACCAA+AGG | + | chr3_3:49505390-49505409 | Msa0456110:intron | 25.0% |
| !!! | CTTTTTTATTAGTGACCAAA+GGG | + | chr3_3:49505391-49505410 | Msa0456110:intron | 25.0% |
| !!! | TTTTTTATTAGTGACCAAAG+GGG | + | chr3_3:49505392-49505411 | Msa0456110:intron | 25.0% |
| ! | TAAAAATTAAAGAACCCCTT+TGG | - | chr3_3:49505409-49505428 | None:intergenic | 25.0% |
| ! | AAAAAATCAATGGTGAGATT+TGG | + | chr3_3:49505529-49505548 | Msa0456110:CDS | 25.0% |
| ! | TTTACTGAAAATTACTCTCT+TGG | + | chr3_3:49505573-49505592 | Msa0456110:CDS | 25.0% |
| ! | AAGTTTGATGTACACATATT+TGG | + | chr3_3:49505641-49505660 | Msa0456110:CDS | 25.0% |
| ! | TGTGATATATATTTATCCAG+AGG | + | chr3_3:49505888-49505907 | Msa0456110:intron | 25.0% |
| ! | AAACCTAATCATATAGAAGA+TGG | + | chr3_3:49506196-49506215 | Msa0456110:CDS | 25.0% |
| ! | AAAAAATTACAAGGGGAAAT+CGG | - | chr3_3:49506465-49506484 | None:intergenic | 25.0% |
| ! | ACTGATAAACAAGAAAGATT+TGG | + | chr3_3:49506858-49506877 | Msa0456110:CDS | 25.0% |
| !! | GTTCATATTTTCAAAAGTGA+CGG | + | chr3_3:49506889-49506908 | Msa0456110:CDS | 25.0% |
| !!! | ACTTTTTTATTAGTGACCAA+AGG | + | chr3_3:49505390-49505409 | Msa0456110:intron | 25.0% |
| !!! | CTTTTTTATTAGTGACCAAA+GGG | + | chr3_3:49505391-49505410 | Msa0456110:intron | 25.0% |
| !!! | TTTTTTATTAGTGACCAAAG+GGG | + | chr3_3:49505392-49505411 | Msa0456110:intron | 25.0% |
| ! | TAAAAATTAAAGAACCCCTT+TGG | - | chr3_3:49505409-49505428 | None:intergenic | 25.0% |
| ! | AAAAAATCAATGGTGAGATT+TGG | + | chr3_3:49505529-49505548 | Msa0456110:CDS | 25.0% |
| ! | TTTACTGAAAATTACTCTCT+TGG | + | chr3_3:49505573-49505592 | Msa0456110:CDS | 25.0% |
| ! | AAGTTTGATGTACACATATT+TGG | + | chr3_3:49505641-49505660 | Msa0456110:CDS | 25.0% |
| ! | TGTGATATATATTTATCCAG+AGG | + | chr3_3:49505888-49505907 | Msa0456110:intron | 25.0% |
| ! | AAACCTAATCATATAGAAGA+TGG | + | chr3_3:49506196-49506215 | Msa0456110:CDS | 25.0% |
| ! | AAAAAATTACAAGGGGAAAT+CGG | - | chr3_3:49506465-49506484 | None:intergenic | 25.0% |
| ! | ACTGATAAACAAGAAAGATT+TGG | + | chr3_3:49506858-49506877 | Msa0456110:CDS | 25.0% |
| !! | GTTCATATTTTCAAAAGTGA+CGG | + | chr3_3:49506889-49506908 | Msa0456110:CDS | 25.0% |
| TTCTCCAAACTAATCTTCAA+AGG | + | chr3_3:49505146-49505165 | Msa0456110:CDS | 30.0% | |
| ! | CAATCCTTTGAAGATTAGTT+TGG | - | chr3_3:49505153-49505172 | None:intergenic | 30.0% |
| AAATACCAACCAAGTTTACT+AGG | + | chr3_3:49505433-49505452 | Msa0456110:CDS | 30.0% | |
| GCACTAAATGGAAAGTTTAT+TGG | + | chr3_3:49505505-49505524 | Msa0456110:CDS | 30.0% | |
| TTGGACATGGTTCTTTAATT+TGG | + | chr3_3:49505592-49505611 | Msa0456110:intron | 30.0% | |
| !! | TTCTTTAATTTGGTGGTGTT+TGG | + | chr3_3:49505602-49505621 | Msa0456110:intron | 30.0% |
| ! | TGATGAATCAGTTGAGATTT+TGG | + | chr3_3:49505742-49505761 | Msa0456110:CDS | 30.0% |
| ! | TTTTGGATGAATGGCTTAAT+CGG | + | chr3_3:49505759-49505778 | Msa0456110:CDS | 30.0% |
| AAACCTCTAACTTTCTTATG+AGG | - | chr3_3:49505824-49505843 | None:intergenic | 30.0% | |
| TCATAAGAAAGTTAGAGGTT+TGG | + | chr3_3:49505823-49505842 | Msa0456110:intron | 30.0% | |
| ATTGAAACCTGAAAACATCA+TGG | + | chr3_3:49505976-49505995 | Msa0456110:intron | 30.0% | |
| TTCATCAATAAATTGGCCAA+GGG | + | chr3_3:49506108-49506127 | Msa0456110:CDS | 30.0% | |
| TGACCATCTTCTATATGATT+AGG | - | chr3_3:49506202-49506221 | None:intergenic | 30.0% | |
| !!! | ACTTCAGCATCATCATTTTT+TGG | + | chr3_3:49506373-49506392 | Msa0456110:intron | 30.0% |
| !!! | TGTGTTGTTTTGTTCGTTTT+GGG | + | chr3_3:49506396-49506415 | Msa0456110:intron | 30.0% |
| ! | AGTCTGTACCAGATTTTAAA+GGG | + | chr3_3:49506668-49506687 | Msa0456110:intron | 30.0% |
| !! | TCAATAACCCCTTTAAAATC+TGG | - | chr3_3:49506679-49506698 | None:intergenic | 30.0% |
| TTCTCCAAACTAATCTTCAA+AGG | + | chr3_3:49505146-49505165 | Msa0456110:CDS | 30.0% | |
| ! | CAATCCTTTGAAGATTAGTT+TGG | - | chr3_3:49505153-49505172 | None:intergenic | 30.0% |
| AAATACCAACCAAGTTTACT+AGG | + | chr3_3:49505433-49505452 | Msa0456110:CDS | 30.0% | |
| GCACTAAATGGAAAGTTTAT+TGG | + | chr3_3:49505505-49505524 | Msa0456110:CDS | 30.0% | |
| TTGGACATGGTTCTTTAATT+TGG | + | chr3_3:49505592-49505611 | Msa0456110:intron | 30.0% | |
| !! | TTCTTTAATTTGGTGGTGTT+TGG | + | chr3_3:49505602-49505621 | Msa0456110:intron | 30.0% |
| ! | TGATGAATCAGTTGAGATTT+TGG | + | chr3_3:49505742-49505761 | Msa0456110:CDS | 30.0% |
| ! | TTTTGGATGAATGGCTTAAT+CGG | + | chr3_3:49505759-49505778 | Msa0456110:CDS | 30.0% |
| AAACCTCTAACTTTCTTATG+AGG | - | chr3_3:49505824-49505843 | None:intergenic | 30.0% | |
| TCATAAGAAAGTTAGAGGTT+TGG | + | chr3_3:49505823-49505842 | Msa0456110:intron | 30.0% | |
| ATTGAAACCTGAAAACATCA+TGG | + | chr3_3:49505976-49505995 | Msa0456110:intron | 30.0% | |
| TTCATCAATAAATTGGCCAA+GGG | + | chr3_3:49506108-49506127 | Msa0456110:CDS | 30.0% | |
| TGACCATCTTCTATATGATT+AGG | - | chr3_3:49506202-49506221 | None:intergenic | 30.0% | |
| !!! | ACTTCAGCATCATCATTTTT+TGG | + | chr3_3:49506373-49506392 | Msa0456110:intron | 30.0% |
| !!! | TGTGTTGTTTTGTTCGTTTT+GGG | + | chr3_3:49506396-49506415 | Msa0456110:intron | 30.0% |
| ! | AGTCTGTACCAGATTTTAAA+GGG | + | chr3_3:49506668-49506687 | Msa0456110:intron | 30.0% |
| !! | TCAATAACCCCTTTAAAATC+TGG | - | chr3_3:49506679-49506698 | None:intergenic | 30.0% |
| ACTTCAAAATCCATCATCCA+TGG | + | chr3_3:49505081-49505100 | Msa0456110:CDS | 35.0% | |
| GAGAATGATCTTGAAGAAAC+GGG | - | chr3_3:49505131-49505150 | None:intergenic | 35.0% | |
| GGAGAATGATCTTGAAGAAA+CGG | - | chr3_3:49505132-49505151 | None:intergenic | 35.0% | |
| !! | TGGTGAGATTTGGTTTGAAA+AGG | + | chr3_3:49505539-49505558 | Msa0456110:CDS | 35.0% |
| !! | GGTGAGATTTGGTTTGAAAA+GGG | + | chr3_3:49505540-49505559 | Msa0456110:CDS | 35.0% |
| !! | AGATTTGGTTTGAAAAGGGT+TGG | + | chr3_3:49505544-49505563 | Msa0456110:CDS | 35.0% |
| GAAAATTACTCTCTTGGACA+TGG | + | chr3_3:49505579-49505598 | Msa0456110:CDS | 35.0% | |
| !! | GACATGGTTCTTTAATTTGG+TGG | + | chr3_3:49505595-49505614 | Msa0456110:intron | 35.0% |
| !! | TTGGTGGTGTTTGGATATAA+AGG | + | chr3_3:49505611-49505630 | Msa0456110:intron | 35.0% |
| ! | CAGTTGAGATTTTGGATGAA+TGG | + | chr3_3:49505750-49505769 | Msa0456110:CDS | 35.0% |
| TACATTGCACACATATATGC+AGG | + | chr3_3:49506058-49506077 | Msa0456110:intron | 35.0% | |
| CTTCATCAATAAATTGGCCA+AGG | + | chr3_3:49506107-49506126 | Msa0456110:CDS | 35.0% | |
| !!! | GTGTGTTGTTTTGTTCGTTT+TGG | + | chr3_3:49506395-49506414 | Msa0456110:intron | 35.0% |
| !! | TTCGTTTTGGGTGGTTTTTT+AGG | + | chr3_3:49506408-49506427 | Msa0456110:intron | 35.0% |
| !! | TCGTTTTGGGTGGTTTTTTA+GGG | + | chr3_3:49506409-49506428 | Msa0456110:intron | 35.0% |
| AAATATAGAAGATGGTCAGC+TGG | + | chr3_3:49506556-49506575 | Msa0456110:intron | 35.0% | |
| ! | CAGTCTGTACCAGATTTTAA+AGG | + | chr3_3:49506667-49506686 | Msa0456110:intron | 35.0% |
| !! | GTCTGTACCAGATTTTAAAG+GGG | + | chr3_3:49506669-49506688 | Msa0456110:intron | 35.0% |
| TAAAGGGGTTATTGAGAACA+AGG | + | chr3_3:49506684-49506703 | Msa0456110:CDS | 35.0% | |
| ! | AGAATGTGATGATGCAGATT+AGG | + | chr3_3:49506710-49506729 | Msa0456110:CDS | 35.0% |
| ! | TGATGATGCAGATTAGGAAA+AGG | + | chr3_3:49506716-49506735 | Msa0456110:CDS | 35.0% |
| AAATTACTCCGTTGTTACGA+AGG | + | chr3_3:49506751-49506770 | Msa0456110:CDS | 35.0% | |
| TTCAAAGACACAAACATCTC+CGG | - | chr3_3:49506839-49506858 | None:intergenic | 35.0% | |
| ACTTCAAAATCCATCATCCA+TGG | + | chr3_3:49505081-49505100 | Msa0456110:CDS | 35.0% | |
| GAGAATGATCTTGAAGAAAC+GGG | - | chr3_3:49505131-49505150 | None:intergenic | 35.0% | |
| GGAGAATGATCTTGAAGAAA+CGG | - | chr3_3:49505132-49505151 | None:intergenic | 35.0% | |
| !! | TGGTGAGATTTGGTTTGAAA+AGG | + | chr3_3:49505539-49505558 | Msa0456110:CDS | 35.0% |
| !! | GGTGAGATTTGGTTTGAAAA+GGG | + | chr3_3:49505540-49505559 | Msa0456110:CDS | 35.0% |
| !! | AGATTTGGTTTGAAAAGGGT+TGG | + | chr3_3:49505544-49505563 | Msa0456110:CDS | 35.0% |
| GAAAATTACTCTCTTGGACA+TGG | + | chr3_3:49505579-49505598 | Msa0456110:CDS | 35.0% | |
| !! | GACATGGTTCTTTAATTTGG+TGG | + | chr3_3:49505595-49505614 | Msa0456110:intron | 35.0% |
| !! | TTGGTGGTGTTTGGATATAA+AGG | + | chr3_3:49505611-49505630 | Msa0456110:intron | 35.0% |
| ! | CAGTTGAGATTTTGGATGAA+TGG | + | chr3_3:49505750-49505769 | Msa0456110:CDS | 35.0% |
| TACATTGCACACATATATGC+AGG | + | chr3_3:49506058-49506077 | Msa0456110:intron | 35.0% | |
| CTTCATCAATAAATTGGCCA+AGG | + | chr3_3:49506107-49506126 | Msa0456110:CDS | 35.0% | |
| !!! | GTGTGTTGTTTTGTTCGTTT+TGG | + | chr3_3:49506395-49506414 | Msa0456110:intron | 35.0% |
| !! | TTCGTTTTGGGTGGTTTTTT+AGG | + | chr3_3:49506408-49506427 | Msa0456110:intron | 35.0% |
| !! | TCGTTTTGGGTGGTTTTTTA+GGG | + | chr3_3:49506409-49506428 | Msa0456110:intron | 35.0% |
| AAATATAGAAGATGGTCAGC+TGG | + | chr3_3:49506556-49506575 | Msa0456110:intron | 35.0% | |
| ! | CAGTCTGTACCAGATTTTAA+AGG | + | chr3_3:49506667-49506686 | Msa0456110:intron | 35.0% |
| !! | GTCTGTACCAGATTTTAAAG+GGG | + | chr3_3:49506669-49506688 | Msa0456110:intron | 35.0% |
| TAAAGGGGTTATTGAGAACA+AGG | + | chr3_3:49506684-49506703 | Msa0456110:CDS | 35.0% | |
| ! | AGAATGTGATGATGCAGATT+AGG | + | chr3_3:49506710-49506729 | Msa0456110:CDS | 35.0% |
| ! | TGATGATGCAGATTAGGAAA+AGG | + | chr3_3:49506716-49506735 | Msa0456110:CDS | 35.0% |
| AAATTACTCCGTTGTTACGA+AGG | + | chr3_3:49506751-49506770 | Msa0456110:CDS | 35.0% | |
| TTCAAAGACACAAACATCTC+CGG | - | chr3_3:49506839-49506858 | None:intergenic | 35.0% | |
| GATAGAATTTCCTCTAGCCA+TGG | - | chr3_3:49505101-49505120 | None:intergenic | 40.0% | |
| ATGATCTTGAAGAAACGGGT+GGG | - | chr3_3:49505127-49505146 | None:intergenic | 40.0% | |
| AATGATCTTGAAGAAACGGG+TGG | - | chr3_3:49505128-49505147 | None:intergenic | 40.0% | |
| TGTCTCCTAGTAAACTTGGT+TGG | - | chr3_3:49505441-49505460 | None:intergenic | 40.0% | |
| ACCAAGTTTACTAGGAGACA+TGG | + | chr3_3:49505441-49505460 | Msa0456110:CDS | 40.0% | |
| TCCATGTCTCCTAGTAAACT+TGG | - | chr3_3:49505445-49505464 | None:intergenic | 40.0% | |
| ACTTTCCATTTAGTGCCATC+AGG | - | chr3_3:49505501-49505520 | None:intergenic | 40.0% | |
| TGAATGGCTTAATCGGAAGA+AGG | + | chr3_3:49505766-49505785 | Msa0456110:CDS | 40.0% | |
| ATCGGAAGAAGGCTAAACAA+AGG | + | chr3_3:49505777-49505796 | Msa0456110:CDS | 40.0% | |
| CTAACTTTCTTATGAGGTCG+AGG | - | chr3_3:49505818-49505837 | None:intergenic | 40.0% | |
| CGACCTCATAAGAAAGTTAG+AGG | + | chr3_3:49505818-49505837 | Msa0456110:CDS | 40.0% | |
| TATCCAGAGGTCTAGATGAA+CGG | + | chr3_3:49505901-49505920 | Msa0456110:intron | 40.0% | |
| ! | TGAGCAACCATGATGTTTTC+AGG | - | chr3_3:49505986-49506005 | None:intergenic | 40.0% |
| TCATATAGAAGATGGTCAGC+TGG | + | chr3_3:49506204-49506223 | Msa0456110:CDS | 40.0% | |
| ! | TAAGCCTGTTTTCGATGTCT+AGG | + | chr3_3:49506310-49506329 | Msa0456110:intron | 40.0% |
| !! | GTTGTTTTGTTCGTTTTGGG+TGG | + | chr3_3:49506399-49506418 | Msa0456110:intron | 40.0% |
| !! | CGTTTTGGGTGGTTTTTTAG+GGG | + | chr3_3:49506410-49506429 | Msa0456110:intron | 40.0% |
| TGCAGATTAGGAAAAGGTCA+TGG | + | chr3_3:49506722-49506741 | Msa0456110:CDS | 40.0% | |
| CATATCTGCCTTCGTAACAA+CGG | - | chr3_3:49506762-49506781 | None:intergenic | 40.0% | |
| GATAGAATTTCCTCTAGCCA+TGG | - | chr3_3:49505101-49505120 | None:intergenic | 40.0% | |
| ATGATCTTGAAGAAACGGGT+GGG | - | chr3_3:49505127-49505146 | None:intergenic | 40.0% | |
| AATGATCTTGAAGAAACGGG+TGG | - | chr3_3:49505128-49505147 | None:intergenic | 40.0% | |
| TGTCTCCTAGTAAACTTGGT+TGG | - | chr3_3:49505441-49505460 | None:intergenic | 40.0% | |
| ACCAAGTTTACTAGGAGACA+TGG | + | chr3_3:49505441-49505460 | Msa0456110:CDS | 40.0% | |
| TCCATGTCTCCTAGTAAACT+TGG | - | chr3_3:49505445-49505464 | None:intergenic | 40.0% | |
| ACTTTCCATTTAGTGCCATC+AGG | - | chr3_3:49505501-49505520 | None:intergenic | 40.0% | |
| TGAATGGCTTAATCGGAAGA+AGG | + | chr3_3:49505766-49505785 | Msa0456110:CDS | 40.0% | |
| ATCGGAAGAAGGCTAAACAA+AGG | + | chr3_3:49505777-49505796 | Msa0456110:CDS | 40.0% | |
| CTAACTTTCTTATGAGGTCG+AGG | - | chr3_3:49505818-49505837 | None:intergenic | 40.0% | |
| CGACCTCATAAGAAAGTTAG+AGG | + | chr3_3:49505818-49505837 | Msa0456110:CDS | 40.0% | |
| TATCCAGAGGTCTAGATGAA+CGG | + | chr3_3:49505901-49505920 | Msa0456110:intron | 40.0% | |
| ! | TGAGCAACCATGATGTTTTC+AGG | - | chr3_3:49505986-49506005 | None:intergenic | 40.0% |
| TCATATAGAAGATGGTCAGC+TGG | + | chr3_3:49506204-49506223 | Msa0456110:CDS | 40.0% | |
| ! | TAAGCCTGTTTTCGATGTCT+AGG | + | chr3_3:49506310-49506329 | Msa0456110:intron | 40.0% |
| !! | GTTGTTTTGTTCGTTTTGGG+TGG | + | chr3_3:49506399-49506418 | Msa0456110:intron | 40.0% |
| !! | CGTTTTGGGTGGTTTTTTAG+GGG | + | chr3_3:49506410-49506429 | Msa0456110:intron | 40.0% |
| TGCAGATTAGGAAAAGGTCA+TGG | + | chr3_3:49506722-49506741 | Msa0456110:CDS | 40.0% | |
| CATATCTGCCTTCGTAACAA+CGG | - | chr3_3:49506762-49506781 | None:intergenic | 40.0% | |
| AATCCATCATCCATGGCTAG+AGG | + | chr3_3:49505088-49505107 | Msa0456110:CDS | 45.0% | |
| TTTCCTCTAGCCATGGATGA+TGG | - | chr3_3:49505094-49505113 | None:intergenic | 45.0% | |
| TGATCTTGAAGAAACGGGTG+GGG | - | chr3_3:49505126-49505145 | None:intergenic | 45.0% | |
| TTCCATTTAGTGCCATCAGG+AGG | - | chr3_3:49505498-49505517 | None:intergenic | 45.0% | |
| TGAGGTCGAGGAGAAACTAA+AGG | - | chr3_3:49505806-49505825 | None:intergenic | 45.0% | |
| !!! | GAGAGGCTTCTGGTTTTTGT+GGG | + | chr3_3:49506252-49506271 | Msa0456110:intron | 45.0% |
| !!! | AGCTGGTGTGTTTTTTGGGA+GGG | + | chr3_3:49506276-49506295 | Msa0456110:intron | 45.0% |
| !!! | TGTGTTTTTTGGGAGGGGAT+TGG | + | chr3_3:49506282-49506301 | Msa0456110:intron | 45.0% |
| !!! | TTTTTTGGGAGGGGATTGGT+GGG | + | chr3_3:49506286-49506305 | Msa0456110:intron | 45.0% |
| AGCACCTAGACATCGAAAAC+AGG | - | chr3_3:49506317-49506336 | None:intergenic | 45.0% | |
| CTGAAGCTGTGGTATTCATG+TGG | + | chr3_3:49506335-49506354 | Msa0456110:intron | 45.0% | |
| TTGTTCGAGCCTGCATATTG+TGG | + | chr3_3:49506436-49506455 | Msa0456110:intron | 45.0% | |
| AATCGGTTGCCACAATATGC+AGG | - | chr3_3:49506448-49506467 | None:intergenic | 45.0% | |
| TGTGCATAGCACTGCAAGAA+TGG | - | chr3_3:49506610-49506629 | None:intergenic | 45.0% | |
| CGTTGTTACGAAGGCAGATA+TGG | + | chr3_3:49506760-49506779 | Msa0456110:CDS | 45.0% | |
| TCGTTGTTTGCAAGTGAGAG+TGG | + | chr3_3:49506805-49506824 | Msa0456110:CDS | 45.0% | |
| AATCCATCATCCATGGCTAG+AGG | + | chr3_3:49505088-49505107 | Msa0456110:CDS | 45.0% | |
| TTTCCTCTAGCCATGGATGA+TGG | - | chr3_3:49505094-49505113 | None:intergenic | 45.0% | |
| TGATCTTGAAGAAACGGGTG+GGG | - | chr3_3:49505126-49505145 | None:intergenic | 45.0% | |
| TTCCATTTAGTGCCATCAGG+AGG | - | chr3_3:49505498-49505517 | None:intergenic | 45.0% | |
| TGAGGTCGAGGAGAAACTAA+AGG | - | chr3_3:49505806-49505825 | None:intergenic | 45.0% | |
| !!! | GAGAGGCTTCTGGTTTTTGT+GGG | + | chr3_3:49506252-49506271 | Msa0456110:intron | 45.0% |
| !!! | AGCTGGTGTGTTTTTTGGGA+GGG | + | chr3_3:49506276-49506295 | Msa0456110:intron | 45.0% |
| !!! | TGTGTTTTTTGGGAGGGGAT+TGG | + | chr3_3:49506282-49506301 | Msa0456110:intron | 45.0% |
| !!! | TTTTTTGGGAGGGGATTGGT+GGG | + | chr3_3:49506286-49506305 | Msa0456110:intron | 45.0% |
| AGCACCTAGACATCGAAAAC+AGG | - | chr3_3:49506317-49506336 | None:intergenic | 45.0% | |
| CTGAAGCTGTGGTATTCATG+TGG | + | chr3_3:49506335-49506354 | Msa0456110:intron | 45.0% | |
| TTGTTCGAGCCTGCATATTG+TGG | + | chr3_3:49506436-49506455 | Msa0456110:intron | 45.0% | |
| AATCGGTTGCCACAATATGC+AGG | - | chr3_3:49506448-49506467 | None:intergenic | 45.0% | |
| TGTGCATAGCACTGCAAGAA+TGG | - | chr3_3:49506610-49506629 | None:intergenic | 45.0% | |
| CGTTGTTACGAAGGCAGATA+TGG | + | chr3_3:49506760-49506779 | Msa0456110:CDS | 45.0% | |
| TCGTTGTTTGCAAGTGAGAG+TGG | + | chr3_3:49506805-49506824 | Msa0456110:CDS | 45.0% | |
| AAGCCGTTCATCTAGACCTC+TGG | - | chr3_3:49505907-49505926 | None:intergenic | 50.0% | |
| !! | TCCTGAGCTCTAGAATCCCT+TGG | - | chr3_3:49506127-49506146 | None:intergenic | 50.0% |
| AAGATGGTCAGCTGGTGTGT+GGG | + | chr3_3:49506212-49506231 | Msa0456110:intron | 50.0% | |
| !! | CAAGGGTTTCTGGTTTGGAG+AGG | + | chr3_3:49506235-49506254 | Msa0456110:intron | 50.0% |
| !! | TTCTGGTTTGGAGAGGCTTC+TGG | + | chr3_3:49506242-49506261 | Msa0456110:intron | 50.0% |
| !!! | GGAGAGGCTTCTGGTTTTTG+TGG | + | chr3_3:49506251-49506270 | Msa0456110:intron | 50.0% |
| !!! | TTCTGGTTTTTGTGGGCAGC+TGG | + | chr3_3:49506259-49506278 | Msa0456110:intron | 50.0% |
| !!! | TGGGCAGCTGGTGTGTTTTT+TGG | + | chr3_3:49506271-49506290 | Msa0456110:intron | 50.0% |
| !!! | GGGCAGCTGGTGTGTTTTTT+GGG | + | chr3_3:49506272-49506291 | Msa0456110:intron | 50.0% |
| !!! | CAGCTGGTGTGTTTTTTGGG+AGG | + | chr3_3:49506275-49506294 | Msa0456110:intron | 50.0% |
| !!! | GCTGGTGTGTTTTTTGGGAG+GGG | + | chr3_3:49506277-49506296 | Msa0456110:intron | 50.0% |
| !!! | GTTTTTTGGGAGGGGATTGG+TGG | + | chr3_3:49506285-49506304 | Msa0456110:intron | 50.0% |
| !! | ATGTCTAGGTGCTGAAGCTG+TGG | + | chr3_3:49506324-49506343 | Msa0456110:intron | 50.0% |
| GTTTGCAAGTGAGAGTGGAC+TGG | + | chr3_3:49506810-49506829 | Msa0456110:CDS | 50.0% | |
| !! | AGTGAGAGTGGACTGGAATC+CGG | + | chr3_3:49506817-49506836 | Msa0456110:CDS | 50.0% |
| AAGCCGTTCATCTAGACCTC+TGG | - | chr3_3:49505907-49505926 | None:intergenic | 50.0% | |
| !! | TCCTGAGCTCTAGAATCCCT+TGG | - | chr3_3:49506127-49506146 | None:intergenic | 50.0% |
| AAGATGGTCAGCTGGTGTGT+GGG | + | chr3_3:49506212-49506231 | Msa0456110:intron | 50.0% | |
| !! | CAAGGGTTTCTGGTTTGGAG+AGG | + | chr3_3:49506235-49506254 | Msa0456110:intron | 50.0% |
| !! | TTCTGGTTTGGAGAGGCTTC+TGG | + | chr3_3:49506242-49506261 | Msa0456110:intron | 50.0% |
| !!! | GGAGAGGCTTCTGGTTTTTG+TGG | + | chr3_3:49506251-49506270 | Msa0456110:intron | 50.0% |
| !!! | TTCTGGTTTTTGTGGGCAGC+TGG | + | chr3_3:49506259-49506278 | Msa0456110:intron | 50.0% |
| !!! | TGGGCAGCTGGTGTGTTTTT+TGG | + | chr3_3:49506271-49506290 | Msa0456110:intron | 50.0% |
| !!! | GGGCAGCTGGTGTGTTTTTT+GGG | + | chr3_3:49506272-49506291 | Msa0456110:intron | 50.0% |
| !!! | CAGCTGGTGTGTTTTTTGGG+AGG | + | chr3_3:49506275-49506294 | Msa0456110:intron | 50.0% |
| !!! | GCTGGTGTGTTTTTTGGGAG+GGG | + | chr3_3:49506277-49506296 | Msa0456110:intron | 50.0% |
| !!! | GTTTTTTGGGAGGGGATTGG+TGG | + | chr3_3:49506285-49506304 | Msa0456110:intron | 50.0% |
| !! | ATGTCTAGGTGCTGAAGCTG+TGG | + | chr3_3:49506324-49506343 | Msa0456110:intron | 50.0% |
| GTTTGCAAGTGAGAGTGGAC+TGG | + | chr3_3:49506810-49506829 | Msa0456110:CDS | 50.0% | |
| !! | AGTGAGAGTGGACTGGAATC+CGG | + | chr3_3:49506817-49506836 | Msa0456110:CDS | 50.0% |
| TCTTGAAGAAACGGGTGGGG+AGG | - | chr3_3:49505123-49505142 | None:intergenic | 55.0% | |
| ! | TCAGGAGGCGTGAGCAATAC+TGG | - | chr3_3:49505483-49505502 | None:intergenic | 55.0% |
| GTATTGCTCACGCCTCCTGA+TGG | + | chr3_3:49505483-49505502 | Msa0456110:CDS | 55.0% | |
| CGCCTCCTGATGGCACTAAA+TGG | + | chr3_3:49505493-49505512 | Msa0456110:CDS | 55.0% | |
| !! | GCCAAGGGATTCTAGAGCTC+AGG | + | chr3_3:49506123-49506142 | Msa0456110:CDS | 55.0% |
| GAAGATGGTCAGCTGGTGTG+TGG | + | chr3_3:49506211-49506230 | Msa0456110:intron | 55.0% | |
| !! | GTGGGCAAGGGTTTCTGGTT+TGG | + | chr3_3:49506230-49506249 | Msa0456110:intron | 55.0% |
| CGAGGTGCACTAACAAGCTC+GGG | - | chr3_3:49506497-49506516 | None:intergenic | 55.0% | |
| GCGAGGTGCACTAACAAGCT+CGG | - | chr3_3:49506498-49506517 | None:intergenic | 55.0% | |
| ! | GCTTGTTAGTGCACCTCGCA+CGG | + | chr3_3:49506499-49506518 | Msa0456110:intron | 55.0% |
| CTTGTTAGTGCACCTCGCAC+GGG | + | chr3_3:49506500-49506519 | Msa0456110:intron | 55.0% | |
| TATAACCACAAGCCCGTGCG+AGG | - | chr3_3:49506515-49506534 | None:intergenic | 55.0% | |
| ATATGGTCGTCGCCTTTCCG+CGG | + | chr3_3:49506777-49506796 | Msa0456110:CDS | 55.0% | |
| TGCAAACAACGACCAACCCG+CGG | - | chr3_3:49506797-49506816 | None:intergenic | 55.0% | |
| TCTTGAAGAAACGGGTGGGG+AGG | - | chr3_3:49505123-49505142 | None:intergenic | 55.0% | |
| ! | TCAGGAGGCGTGAGCAATAC+TGG | - | chr3_3:49505483-49505502 | None:intergenic | 55.0% |
| GTATTGCTCACGCCTCCTGA+TGG | + | chr3_3:49505483-49505502 | Msa0456110:CDS | 55.0% | |
| CGCCTCCTGATGGCACTAAA+TGG | + | chr3_3:49505493-49505512 | Msa0456110:CDS | 55.0% | |
| !! | GCCAAGGGATTCTAGAGCTC+AGG | + | chr3_3:49506123-49506142 | Msa0456110:CDS | 55.0% |
| GAAGATGGTCAGCTGGTGTG+TGG | + | chr3_3:49506211-49506230 | Msa0456110:intron | 55.0% | |
| !! | GTGGGCAAGGGTTTCTGGTT+TGG | + | chr3_3:49506230-49506249 | Msa0456110:intron | 55.0% |
| CGAGGTGCACTAACAAGCTC+GGG | - | chr3_3:49506497-49506516 | None:intergenic | 55.0% | |
| GCGAGGTGCACTAACAAGCT+CGG | - | chr3_3:49506498-49506517 | None:intergenic | 55.0% | |
| ! | GCTTGTTAGTGCACCTCGCA+CGG | + | chr3_3:49506499-49506518 | Msa0456110:intron | 55.0% |
| CTTGTTAGTGCACCTCGCAC+GGG | + | chr3_3:49506500-49506519 | Msa0456110:intron | 55.0% | |
| TATAACCACAAGCCCGTGCG+AGG | - | chr3_3:49506515-49506534 | None:intergenic | 55.0% | |
| ATATGGTCGTCGCCTTTCCG+CGG | + | chr3_3:49506777-49506796 | Msa0456110:CDS | 55.0% | |
| TGCAAACAACGACCAACCCG+CGG | - | chr3_3:49506797-49506816 | None:intergenic | 55.0% | |
| GTCAGCTGGTGTGTGGGCAA+GGG | + | chr3_3:49506218-49506237 | Msa0456110:intron | 60.0% | |
| GGTGTGTGGGCAAGGGTTTC+TGG | + | chr3_3:49506225-49506244 | Msa0456110:intron | 60.0% | |
| GGTGCACTAACAAGCTCGGG+AGG | - | chr3_3:49506494-49506513 | None:intergenic | 60.0% | |
| TATGGTCGTCGCCTTTCCGC+GGG | + | chr3_3:49506778-49506797 | Msa0456110:CDS | 60.0% | |
| ACAACGACCAACCCGCGGAA+AGG | - | chr3_3:49506792-49506811 | None:intergenic | 60.0% | |
| GTCAGCTGGTGTGTGGGCAA+GGG | + | chr3_3:49506218-49506237 | Msa0456110:intron | 60.0% | |
| GGTGTGTGGGCAAGGGTTTC+TGG | + | chr3_3:49506225-49506244 | Msa0456110:intron | 60.0% | |
| GGTGCACTAACAAGCTCGGG+AGG | - | chr3_3:49506494-49506513 | None:intergenic | 60.0% | |
| TATGGTCGTCGCCTTTCCGC+GGG | + | chr3_3:49506778-49506797 | Msa0456110:CDS | 60.0% | |
| ACAACGACCAACCCGCGGAA+AGG | - | chr3_3:49506792-49506811 | None:intergenic | 60.0% | |
| GGTCAGCTGGTGTGTGGGCA+AGG | + | chr3_3:49506217-49506236 | Msa0456110:intron | 65.0% | |
| GGTCAGCTGGTGTGTGGGCA+AGG | + | chr3_3:49506217-49506236 | Msa0456110:intron | 65.0% | |
| GTGCACCTCGCACGGGCTTG+TGG | + | chr3_3:49506507-49506526 | Msa0456110:intron | 70.0% | |
| GTCGTCGCCTTTCCGCGGGT+TGG | + | chr3_3:49506782-49506801 | Msa0456110:CDS | 70.0% | |
| GTGCACCTCGCACGGGCTTG+TGG | + | chr3_3:49506507-49506526 | Msa0456110:intron | 70.0% | |
| GTCGTCGCCTTTCCGCGGGT+TGG | + | chr3_3:49506782-49506801 | Msa0456110:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 49505049 | 49506915 | 49505049 | ID=Msa0456110;Name=Msa0456110 |
| chr3_3 | mRNA | 49505049 | 49506915 | 49505049 | ID=Msa0456110-mRNA-1;Parent=Msa0456110;Name=Msa0456110-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|0.75|0.8|5|0|296 |
| chr3_3 | exon | 49505049 | 49505171 | 49505049 | ID=Msa0456110-mRNA-1:exon:9370;Parent=Msa0456110-mRNA-1 |
| chr3_3 | exon | 49505432 | 49505600 | 49505432 | ID=Msa0456110-mRNA-1:exon:9371;Parent=Msa0456110-mRNA-1 |
| chr3_3 | exon | 49505633 | 49505839 | 49505633 | ID=Msa0456110-mRNA-1:exon:9372;Parent=Msa0456110-mRNA-1 |
| chr3_3 | exon | 49506080 | 49506225 | 49506080 | ID=Msa0456110-mRNA-1:exon:9373;Parent=Msa0456110-mRNA-1 |
| chr3_3 | exon | 49506670 | 49506915 | 49506670 | ID=Msa0456110-mRNA-1:exon:9374;Parent=Msa0456110-mRNA-1 |
| chr3_3 | CDS | 49505049 | 49505171 | 49505049 | ID=Msa0456110-mRNA-1:cds;Parent=Msa0456110-mRNA-1 |
| chr3_3 | CDS | 49505432 | 49505600 | 49505432 | ID=Msa0456110-mRNA-1:cds;Parent=Msa0456110-mRNA-1 |
| chr3_3 | CDS | 49505633 | 49505839 | 49505633 | ID=Msa0456110-mRNA-1:cds;Parent=Msa0456110-mRNA-1 |
| chr3_3 | CDS | 49506080 | 49506225 | 49506080 | ID=Msa0456110-mRNA-1:cds;Parent=Msa0456110-mRNA-1 |
| chr3_3 | CDS | 49506670 | 49506915 | 49506670 | ID=Msa0456110-mRNA-1:cds;Parent=Msa0456110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
