Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0456130 | XP_003600455.1 | 80.816 | 245 | 40 | 2 | 1 | 238 | 35 | 279 | 6.01e-132 | 393 |
Msa0456130 | XP_003600455.1 | 82.937 | 252 | 37 | 2 | 239 | 484 | 22 | 273 | 1.35e-141 | 418 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0456130 | sp|Q8L3W1|VRN1_ARATH | 26.266 | 316 | 154 | 11 | 239 | 484 | 21 | 327 | 4.80e-19 | 91.7 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0456130 | G8A2Z2 | 80.816 | 245 | 40 | 2 | 1 | 238 | 35 | 279 | 2.87e-132 | 393 |
Msa0456130 | G8A2Z2 | 82.937 | 252 | 37 | 2 | 239 | 484 | 22 | 273 | 6.43e-142 | 418 |
Gene ID | Type | Classification |
---|---|---|
Msa0456130 | TF | B3 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0456130 | MtrunA17_Chr3g0103181 | 70.916 | 251 | 62 | 3 | 239 | 483 | 25 | 270 | 1.80e-117 | 346 |
Msa0456130 | MtrunA17_Chr3g0103181 | 71.429 | 245 | 58 | 5 | 1 | 238 | 38 | 277 | 9.10e-111 | 329 |
Msa0456130 | MtrunA17_Chr3g0103191 | 78.509 | 228 | 41 | 4 | 239 | 459 | 25 | 251 | 2.31e-116 | 342 |
Msa0456130 | MtrunA17_Chr3g0103191 | 78.505 | 214 | 39 | 2 | 1 | 207 | 38 | 251 | 4.65e-114 | 336 |
Msa0456130 | MtrunA17_Chr3g0103201 | 78.899 | 218 | 39 | 2 | 28 | 238 | 1 | 218 | 8.45e-116 | 339 |
Msa0456130 | MtrunA17_Chr3g0103201 | 80.660 | 212 | 35 | 2 | 279 | 484 | 1 | 212 | 5.09e-115 | 337 |
Msa0456130 | MtrunA17_Chr3g0103171 | 66.795 | 259 | 77 | 3 | 233 | 484 | 1 | 257 | 2.12e-111 | 330 |
Msa0456130 | MtrunA17_Chr3g0103171 | 69.231 | 247 | 66 | 4 | 1 | 238 | 18 | 263 | 3.72e-110 | 327 |
Msa0456130 | MtrunA17_Chr3g0103151 | 70.803 | 137 | 35 | 1 | 239 | 370 | 25 | 161 | 2.30e-60 | 195 |
Msa0456130 | MtrunA17_Chr3g0103151 | 78.400 | 125 | 19 | 3 | 1 | 118 | 38 | 161 | 1.29e-58 | 190 |
Msa0456130 | MtrunA17_Chr3g0103161 | 73.333 | 120 | 32 | 0 | 119 | 238 | 2 | 121 | 1.38e-56 | 184 |
Msa0456130 | MtrunA17_Chr3g0103161 | 73.684 | 114 | 30 | 0 | 371 | 484 | 2 | 115 | 4.31e-51 | 169 |
Msa0456130 | MtrunA17_Chr1g0163071 | 34.767 | 279 | 136 | 9 | 240 | 479 | 2 | 273 | 2.01e-39 | 144 |
Msa0456130 | MtrunA17_Chr1g0163071 | 33.574 | 277 | 137 | 9 | 1 | 237 | 14 | 283 | 1.12e-36 | 137 |
Msa0456130 | MtrunA17_Chr1g0208771 | 32.867 | 286 | 138 | 8 | 237 | 483 | 10 | 280 | 3.74e-34 | 134 |
Msa0456130 | MtrunA17_Chr1g0208771 | 32.472 | 271 | 140 | 8 | 1 | 237 | 25 | 286 | 1.64e-31 | 126 |
Msa0456130 | MtrunA17_Chr8g0390841 | 31.633 | 294 | 148 | 10 | 225 | 480 | 40 | 318 | 1.39e-31 | 127 |
Msa0456130 | MtrunA17_Chr8g0390841 | 32.491 | 277 | 131 | 10 | 1 | 237 | 67 | 327 | 6.04e-27 | 114 |
Msa0456130 | MtrunA17_Chr7g0233521 | 32.061 | 262 | 148 | 7 | 239 | 481 | 1 | 251 | 1.35e-27 | 111 |
Msa0456130 | MtrunA17_Chr7g0233521 | 30.952 | 252 | 155 | 6 | 1 | 238 | 14 | 260 | 1.86e-22 | 97.1 |
Msa0456130 | MtrunA17_Chr7g0233561 | 30.104 | 289 | 163 | 9 | 225 | 481 | 19 | 300 | 3.48e-27 | 111 |
Msa0456130 | MtrunA17_Chr7g0233561 | 30.627 | 271 | 148 | 10 | 1 | 238 | 46 | 309 | 1.71e-22 | 98.2 |
Msa0456130 | MtrunA17_Chr3g0131891 | 31.206 | 282 | 171 | 9 | 218 | 480 | 13 | 290 | 1.50e-25 | 107 |
Msa0456130 | MtrunA17_Chr3g0131891 | 28.405 | 257 | 162 | 8 | 1 | 238 | 47 | 300 | 6.44e-19 | 87.8 |
Msa0456130 | MtrunA17_Chr7g0233541 | 29.496 | 278 | 149 | 9 | 240 | 481 | 2 | 268 | 1.90e-25 | 105 |
Msa0456130 | MtrunA17_Chr7g0233541 | 26.894 | 264 | 167 | 6 | 1 | 238 | 14 | 277 | 4.56e-19 | 87.8 |
Msa0456130 | MtrunA17_Chr3g0077461 | 25.626 | 519 | 253 | 18 | 1 | 482 | 35 | 457 | 6.60e-25 | 107 |
Msa0456130 | MtrunA17_Chr3g0077461 | 36.264 | 91 | 53 | 1 | 232 | 317 | 15 | 105 | 9.22e-12 | 67.0 |
Msa0456130 | MtrunA17_Chr7g0233531 | 30.859 | 256 | 157 | 8 | 240 | 481 | 2 | 251 | 6.02e-24 | 101 |
Msa0456130 | MtrunA17_Chr7g0233531 | 30.739 | 257 | 149 | 7 | 1 | 238 | 14 | 260 | 3.96e-20 | 90.5 |
Msa0456130 | MtrunA17_Chr1g0163131 | 31.250 | 272 | 138 | 10 | 1 | 237 | 46 | 303 | 1.21e-23 | 101 |
Msa0456130 | MtrunA17_Chr3g0077411 | 25.000 | 536 | 262 | 19 | 1 | 480 | 53 | 504 | 1.98e-23 | 103 |
Msa0456130 | MtrunA17_Chr3g0077411 | 24.031 | 258 | 125 | 7 | 239 | 483 | 40 | 239 | 2.69e-12 | 68.9 |
Msa0456130 | MtrunA17_Chr1g0163181 | 29.181 | 281 | 146 | 11 | 239 | 483 | 20 | 283 | 4.68e-21 | 95.5 |
Msa0456130 | MtrunA17_Chr1g0163181 | 28.464 | 267 | 151 | 10 | 1 | 237 | 33 | 289 | 1.69e-18 | 87.8 |
Msa0456130 | MtrunA17_Chr4g0067431 | 26.962 | 293 | 179 | 10 | 218 | 479 | 9 | 297 | 3.00e-20 | 91.7 |
Msa0456130 | MtrunA17_Chr4g0067431 | 25.869 | 259 | 156 | 10 | 1 | 227 | 43 | 297 | 8.14e-16 | 78.6 |
Msa0456130 | MtrunA17_Chr1g0163251 | 27.626 | 257 | 168 | 6 | 239 | 483 | 20 | 270 | 8.49e-20 | 91.3 |
Msa0456130 | MtrunA17_Chr1g0163251 | 28.571 | 252 | 157 | 7 | 1 | 237 | 33 | 276 | 1.40e-18 | 87.4 |
Msa0456130 | MtrunA17_Chr7g0233571 | 41.026 | 117 | 64 | 1 | 240 | 351 | 26 | 142 | 1.38e-19 | 87.4 |
Msa0456130 | MtrunA17_Chr7g0233571 | 28.342 | 187 | 96 | 4 | 1 | 158 | 38 | 215 | 2.37e-14 | 72.4 |
Msa0456130 | MtrunA17_Chr5g0419201 | 33.775 | 151 | 93 | 2 | 223 | 366 | 15 | 165 | 2.15e-19 | 86.3 |
Msa0456130 | MtrunA17_Chr5g0419201 | 32.558 | 129 | 65 | 4 | 1 | 114 | 44 | 165 | 9.63e-13 | 67.0 |
Msa0456130 | MtrunA17_Chr5g0429931 | 28.405 | 257 | 146 | 7 | 235 | 483 | 6 | 232 | 1.32e-18 | 85.1 |
Msa0456130 | MtrunA17_Chr5g0429931 | 25.306 | 245 | 146 | 7 | 1 | 237 | 23 | 238 | 1.10e-12 | 67.8 |
Msa0456130 | MtrunA17_Chr3g0077451 | 26.877 | 253 | 132 | 7 | 239 | 480 | 11 | 221 | 7.17e-18 | 82.8 |
Msa0456130 | MtrunA17_Chr3g0077451 | 26.639 | 244 | 135 | 7 | 1 | 237 | 24 | 230 | 8.36e-13 | 68.2 |
Msa0456130 | MtrunA17_Chr4g0009491 | 23.543 | 446 | 234 | 14 | 1 | 414 | 25 | 395 | 1.01e-17 | 85.5 |
Msa0456130 | MtrunA17_Chr1g0163201 | 24.740 | 384 | 207 | 18 | 1 | 316 | 31 | 400 | 1.00e-16 | 82.0 |
Msa0456130 | MtrunA17_Chr1g0163201 | 25.283 | 265 | 171 | 9 | 239 | 483 | 18 | 275 | 2.75e-16 | 80.9 |
Msa0456130 | MtrunA17_Chr1g0163221 | 27.465 | 284 | 178 | 8 | 215 | 479 | 2 | 276 | 5.82e-16 | 79.3 |
Msa0456130 | MtrunA17_Chr1g0162441 | 34.906 | 106 | 64 | 1 | 226 | 326 | 9 | 114 | 9.16e-15 | 76.3 |
Msa0456130 | MtrunA17_Chr4g0033961 | 28.272 | 191 | 109 | 6 | 226 | 403 | 8 | 183 | 2.48e-14 | 74.7 |
Msa0456130 | MtrunA17_Chr3g0077421 | 27.434 | 226 | 119 | 5 | 20 | 237 | 4 | 192 | 1.13e-13 | 69.7 |
Msa0456130 | MtrunA17_Chr3g0077441 | 27.434 | 226 | 119 | 5 | 20 | 237 | 4 | 192 | 1.13e-13 | 69.7 |
Msa0456130 | MtrunA17_Chr1g0163261 | 23.247 | 271 | 189 | 6 | 225 | 483 | 10 | 273 | 1.92e-13 | 70.9 |
Msa0456130 | MtrunA17_Chr1g0163261 | 23.506 | 251 | 170 | 5 | 1 | 237 | 37 | 279 | 8.29e-13 | 69.3 |
Msa0456130 | MtrunA17_Chr1g0163241 | 31.405 | 121 | 76 | 3 | 222 | 335 | 4 | 124 | 2.63e-13 | 67.8 |
Msa0456130 | MtrunA17_Chr1g0154161 | 22.594 | 239 | 174 | 4 | 1 | 228 | 58 | 296 | 4.01e-13 | 70.5 |
Msa0456130 | MtrunA17_Chr1g0154161 | 23.282 | 262 | 169 | 7 | 240 | 480 | 46 | 296 | 4.46e-12 | 67.0 |
Msa0456130 | MtrunA17_Chr1g0163161 | 40.196 | 102 | 46 | 4 | 1 | 90 | 1 | 99 | 6.32e-13 | 65.9 |
Msa0456130 | MtrunA17_Chr1g0163191 | 34.066 | 91 | 56 | 2 | 239 | 326 | 20 | 109 | 8.01e-13 | 66.2 |
Msa0456130 | MtrunA17_Chr1g0163231 | 22.472 | 267 | 156 | 8 | 239 | 479 | 24 | 265 | 1.14e-12 | 68.6 |
Msa0456130 | MtrunA17_Chr1g0154131 | 24.345 | 267 | 168 | 9 | 1 | 240 | 210 | 469 | 2.53e-12 | 68.9 |
Msa0456130 | MtrunA17_Chr1g0154131 | 26.449 | 276 | 156 | 10 | 240 | 482 | 198 | 459 | 3.70e-12 | 68.2 |
Msa0456130 | MtrunA17_Chr1g0162411 | 35.849 | 106 | 61 | 2 | 226 | 326 | 9 | 112 | 1.38e-11 | 66.6 |
Msa0456130 | MtrunA17_Chr1g0154111 | 25.146 | 171 | 114 | 3 | 136 | 292 | 251 | 421 | 4.88e-11 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0456130 | AT3G18990.1 | 25.658 | 304 | 154 | 8 | 1 | 237 | 34 | 332 | 9.28e-21 | 94.0 |
Msa0456130 | AT3G18990.1 | 26.266 | 316 | 154 | 11 | 239 | 484 | 21 | 327 | 4.88e-20 | 91.7 |
Msa0456130 | AT3G18990.2 | 25.658 | 304 | 154 | 8 | 1 | 237 | 34 | 332 | 1.48e-20 | 93.6 |
Msa0456130 | AT3G18990.2 | 26.266 | 316 | 154 | 11 | 239 | 484 | 21 | 327 | 7.19e-20 | 91.7 |
Msa0456130 | AT1G49475.1 | 36.036 | 111 | 64 | 3 | 233 | 338 | 43 | 151 | 9.98e-14 | 70.1 |
Msa0456130 | AT1G49475.1 | 36.364 | 110 | 53 | 2 | 1 | 93 | 61 | 170 | 3.49e-11 | 62.8 |
Msa0456130 | AT1G49480.3 | 30.159 | 126 | 78 | 3 | 117 | 237 | 97 | 217 | 1.24e-12 | 67.8 |
Msa0456130 | AT1G49480.1 | 30.159 | 126 | 78 | 3 | 117 | 237 | 97 | 217 | 1.24e-12 | 67.8 |
Msa0456130 | AT1G49480.2 | 30.159 | 126 | 78 | 3 | 117 | 237 | 97 | 217 | 1.24e-12 | 67.8 |
Msa0456130 | AT4G01580.1 | 32.609 | 138 | 78 | 4 | 225 | 355 | 31 | 160 | 3.08e-12 | 65.9 |
Msa0456130 | AT3G18960.2 | 34.694 | 98 | 59 | 1 | 225 | 317 | 31 | 128 | 3.44e-11 | 62.8 |
Msa0456130 | AT3G18960.1 | 34.694 | 98 | 59 | 1 | 225 | 317 | 31 | 128 | 3.80e-11 | 63.2 |
Find 85 sgRNAs with CRISPR-Local
Find 660 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGATGAATCAGTTGAGATTT+TGG | 0.191329 | 3_3:+49528228 | Msa0456130:CDS |
GCACTAAATGGAAAGTTTAT+TGG | 0.220986 | 3_3:+49527999 | Msa0456130:CDS |
GCACTAAATGGAAAGTTTAT+TGG | 0.220986 | 3_3:+49537196 | Msa0456130:CDS |
GTATGTTCTACCAGATTAAT+TGG | 0.237843 | 3_3:-49537779 | None:intergenic |
CAGTCTGTACCAGATTTAAA+AGG | 0.258589 | 3_3:+49537894 | Msa0456130:intron |
AAAGAACTTCATCAATAAAT+TGG | 0.265159 | 3_3:+49537681 | Msa0456130:CDS |
AAAGAACTTCATCAATAAAT+TGG | 0.266413 | 3_3:+49528497 | Msa0456130:CDS |
AGACTCCTGATGGCACTAAA+TGG | 0.296213 | 3_3:+49537184 | Msa0456130:CDS |
AGACTACAGATGGCACTAAA+TGG | 0.314510 | 3_3:+49527987 | Msa0456130:CDS |
AAGCTATTTCCACAGCATTC+AGG | 0.331470 | 3_3:-49537350 | None:intergenic |
TTTACTGAAAATTACTCTCT+TGG | 0.354240 | 3_3:+49537264 | Msa0456130:CDS |
GAAATTACTTCGTTCTTATG+AGG | 0.355622 | 3_3:+49537977 | Msa0456130:CDS |
ACTGATAAACAAGAAAGATT+TGG | 0.358474 | 3_3:+49528908 | Msa0456130:CDS |
TTTACTGAAAATTACTCTCT+TGG | 0.363298 | 3_3:+49528067 | Msa0456130:CDS |
TCCTGAGCTCTAGCATCCTT+TGG | 0.372162 | 3_3:-49537704 | None:intergenic |
CGGACTTTCTTATGTGTTTG+AGG | 0.377509 | 3_3:-49537498 | None:intergenic |
TGGAGAGATTTGGTTTGAAA+AGG | 0.378673 | 3_3:+49528033 | Msa0456130:CDS |
CTCTCTTGGACATGGCTGCT+TGG | 0.402665 | 3_3:+49528081 | Msa0456130:CDS |
CTCTCTTGGACATGGCTGCT+TGG | 0.402665 | 3_3:+49537278 | Msa0456130:CDS |
CGTTCTTATGAGGGCAGAAA+TGG | 0.405201 | 3_3:+49537987 | Msa0456130:CDS |
GAAATTACTTCGTTGTTATG+AGG | 0.407954 | 3_3:+49528800 | Msa0456130:CDS |
TGGAGAGATCTGGTTTGAAA+AGG | 0.408965 | 3_3:+49537230 | Msa0456130:CDS |
GGAGAGATTTGGTTTGAAAA+GGG | 0.411021 | 3_3:+49528034 | Msa0456130:CDS |
CTACTCATCTGGTAGAAAAT+CGG | 0.421938 | 3_3:+49528596 | Msa0456130:CDS |
AGTGGAAGTGGACTGAAATC+AGG | 0.429019 | 3_3:+49528867 | Msa0456130:CDS |
TCTCATCAAGCCAATTAATC+TGG | 0.435253 | 3_3:+49537769 | Msa0456130:CDS |
ACTTTCCATTTAGTGCCATC+AGG | 0.440549 | 3_3:-49537189 | None:intergenic |
AGAATGTGGTACTGCAGATT+GGG | 0.448452 | 3_3:+49528760 | Msa0456130:CDS |
AGTGAAAGTGGACTGAAATC+AGG | 0.450670 | 3_3:+49538044 | Msa0456130:CDS |
TCTCATAAAGCCTACTCATC+TGG | 0.455995 | 3_3:+49528585 | Msa0456130:CDS |
AAGAATGTGGTACTGCAGAT+TGG | 0.459475 | 3_3:+49528759 | Msa0456130:CDS |
AGATTTGGTTTGAAAAGGGT+TGG | 0.461112 | 3_3:+49528038 | Msa0456130:CDS |
AGAATGTGATGCTGCTGATT+GGG | 0.480788 | 3_3:+49537937 | Msa0456130:CDS |
AAGAATGTGATGCTGCTGAT+TGG | 0.482287 | 3_3:+49537936 | Msa0456130:CDS |
CTTATGTGTTTGAGGAGAAA+CGG | 0.483996 | 3_3:-49537490 | None:intergenic |
AAATACCAAGTAAGTTTACT+AGG | 0.486071 | 3_3:+49537124 | Msa0456130:CDS |
AGATCTGGTTTGAAAAGGGT+TGG | 0.488357 | 3_3:+49537235 | Msa0456130:CDS |
GGAGAGATCTGGTTTGAAAA+GGG | 0.493320 | 3_3:+49537231 | Msa0456130:CDS |
AAATTACTTCGTTGTTATGA+GGG | 0.500449 | 3_3:+49528801 | Msa0456130:CDS |
TCAATAACCCCATTTAAAAG+TGG | 0.503683 | 3_3:-49528726 | None:intergenic |
CGACGACATAAGAAAGTTCG+AGG | 0.503833 | 3_3:+49528304 | Msa0456130:CDS |
AAATGGGGTTATTGAGAACA+AGG | 0.504796 | 3_3:+49528734 | Msa0456130:CDS |
AAAAGGGATTATTGAGAACA+AGG | 0.512795 | 3_3:+49537911 | Msa0456130:CDS |
GCCAAAGGATGCTAGAGCTC+AGG | 0.513948 | 3_3:+49537703 | Msa0456130:CDS |
TCTTGGACATGGCTGCTTGG+TGG | 0.517847 | 3_3:+49528084 | Msa0456130:CDS |
TCTTGGACATGGCTGCTTGG+TGG | 0.517847 | 3_3:+49537281 | Msa0456130:CDS |
TTGGTGGTGTTTGAATATAA+AGG | 0.518126 | 3_3:+49528100 | Msa0456130:CDS |
GCCACAGGATGCTAGAGCTC+AGG | 0.519514 | 3_3:+49528519 | Msa0456130:CDS |
AATGGTCGTCGCCTTTCCGC+AGG | 0.521285 | 3_3:+49538005 | Msa0456130:CDS |
AGTCTGTACCAGATTTAAAA+GGG | 0.526687 | 3_3:+49537895 | Msa0456130:intron |
TCTGTAGTCTTTATCAACAC+TGG | 0.531326 | 3_3:-49527974 | None:intergenic |
TGTCTCCTAGTAAACTTACT+TGG | 0.535374 | 3_3:-49537129 | None:intergenic |
TGGTACTGCAGATTGGGAAA+AGG | 0.536643 | 3_3:+49528766 | Msa0456130:CDS |
GGCTTAATCGGAAGAAGGCT+AGG | 0.536744 | 3_3:+49528257 | Msa0456130:CDS |
TCAGGAGTCTTTATCAACAC+TGG | 0.545485 | 3_3:-49537171 | None:intergenic |
TGTCGTCGAGGAGAAACAAA+AGG | 0.549605 | 3_3:-49528289 | None:intergenic |
AAATTACTTCGTTCTTATGA+GGG | 0.551233 | 3_3:+49537978 | Msa0456130:CDS |
TCACTGTTTGCAAGTGAAAG+TGG | 0.557742 | 3_3:+49538032 | Msa0456130:CDS |
TAATCTGGTAGAACATACTC+TGG | 0.560062 | 3_3:+49537784 | Msa0456130:CDS |
TGCAGATTGGGAAAAGGTCA+TGG | 0.561983 | 3_3:+49528772 | Msa0456130:CDS |
AAGTATGTATACATCAAACT+TGG | 0.563066 | 3_3:-49528128 | None:intergenic |
GCCAACCCGCGGAAAAGCGA+CGG | 0.564559 | 3_3:-49528833 | None:intergenic |
TTCATCAATAAATTGGCCAC+AGG | 0.565636 | 3_3:+49528504 | Msa0456130:CDS |
GTCGTCGCCTTTCCGCAGGT+TGG | 0.568723 | 3_3:+49538009 | Msa0456130:CDS |
TGAATGGCTTAATCGGAAGA+AGG | 0.573439 | 3_3:+49537449 | Msa0456130:CDS |
TGATGCTGCTGATTGGGAAA+AGG | 0.583869 | 3_3:+49537943 | Msa0456130:CDS |
TGAATGGCTTAATCGGAAGA+AGG | 0.588393 | 3_3:+49528252 | Msa0456130:CDS |
TTCATCAATAAATTGGCCAA+AGG | 0.589930 | 3_3:+49537688 | Msa0456130:CDS |
TCCTGAGCTCTAGCATCCTG+TGG | 0.590768 | 3_3:-49528520 | None:intergenic |
AAATATGTGTACATCAAACA+TGG | 0.596383 | 3_3:-49537325 | None:intergenic |
TGCTGATTGGGAAAAGGTCG+TGG | 0.603516 | 3_3:+49537949 | Msa0456130:CDS |
AGTAAGTTTACTAGGAGACA+TGG | 0.620165 | 3_3:+49537132 | Msa0456130:CDS |
ATCGGAAGAAGGCTAGGCAA+AGG | 0.622199 | 3_3:+49528263 | Msa0456130:CDS |
TGTGTTTGAGGAGAAACGGA+AGG | 0.627724 | 3_3:-49537486 | None:intergenic |
ACAGTGACCAACCTGCGGAA+AGG | 0.630949 | 3_3:-49538016 | None:intergenic |
GAAAATTACTCTCTTGGACA+TGG | 0.632483 | 3_3:+49528073 | Msa0456130:CDS |
GAAAATTACTCTCTTGGACA+TGG | 0.632483 | 3_3:+49537270 | Msa0456130:CDS |
GTGTTGATAAAGACTACAGA+TGG | 0.638828 | 3_3:+49527977 | Msa0456130:CDS |
GTGTTGATAAAGACTCCTGA+TGG | 0.643737 | 3_3:+49537174 | Msa0456130:CDS |
CATATTTGACCTGAATGCTG+TGG | 0.649727 | 3_3:+49537341 | Msa0456130:CDS |
CGAACTTTCTTATGTCGTCG+AGG | 0.659272 | 3_3:-49528301 | None:intergenic |
TCATCTGGTAGAAAATCGGA+TGG | 0.661350 | 3_3:+49528600 | Msa0456130:CDS |
TGCAAACAGTGACCAACCTG+CGG | 0.663761 | 3_3:-49538021 | None:intergenic |
TGAGAACAAGGATAAGAATG+TGG | 0.664188 | 3_3:+49528746 | Msa0456130:CDS |
CAAACACATAAGAAAGTCCG+AGG | 0.666813 | 3_3:+49537501 | Msa0456130:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAAAAAAATTAACTCT+TGG | - | chr3_3:49528425-49528444 | None:intergenic | 10.0% |
!! | TATATGATAATATCAATTAA+TGG | + | chr3_3:49530866-49530885 | Msa0456130:intron | 10.0% |
!! | AATTAAAATGAGATTAATAA+AGG | - | chr3_3:49530967-49530986 | None:intergenic | 10.0% |
!! | ATTTGCTTATATAATTAAAA+CGG | - | chr3_3:49532302-49532321 | None:intergenic | 10.0% |
!! | TAAGCAAATTAATAAATAAA+TGG | + | chr3_3:49532313-49532332 | Msa0456130:intron | 10.0% |
!! | AAGCAAATTAATAAATAAAT+GGG | + | chr3_3:49532314-49532333 | Msa0456130:intron | 10.0% |
!! | TTAAAGAAAAAATAATACTT+TGG | + | chr3_3:49535741-49535760 | Msa0456130:intron | 10.0% |
!!! | TAGTTTTTTTTTTTTTTTTG+AGG | + | chr3_3:49536341-49536360 | Msa0456130:intron | 10.0% |
!!! | AGTTTTTTTTTTTTTTTTGA+GGG | + | chr3_3:49536342-49536361 | Msa0456130:intron | 10.0% |
!! | GTTTATTGGAAAAAAATTAA+TGG | + | chr3_3:49528013-49528032 | Msa0456130:CDS | 15.0% |
!!! | TTAAGTTTGAAATATTTTGA+AGG | + | chr3_3:49529041-49529060 | Msa0456130:intron | 15.0% |
!!! | CTATCAAATTTTTCAAATAT+TGG | + | chr3_3:49529099-49529118 | Msa0456130:intron | 15.0% |
!! | GCACTAAAAATTATAATTAA+TGG | - | chr3_3:49529278-49529297 | None:intergenic | 15.0% |
!! | AACACTTAAAAAAAAAATAC+TGG | - | chr3_3:49529433-49529452 | None:intergenic | 15.0% |
!! | TTTAGAGAAGAAAAAAAATA+GGG | - | chr3_3:49529547-49529566 | None:intergenic | 15.0% |
!! | AAATTAATAAATAAATGGGT+TGG | + | chr3_3:49532318-49532337 | Msa0456130:intron | 15.0% |
!! | TAATGTTCAATTTACTTTAA+AGG | + | chr3_3:49532431-49532450 | Msa0456130:intron | 15.0% |
!! | AAAAAAAAAGGAAAAAAGAA+AGG | + | chr3_3:49532594-49532613 | Msa0456130:intron | 15.0% |
!!! | AATTATTTAAAGTAAACACT+GGG | - | chr3_3:49532915-49532934 | None:intergenic | 15.0% |
!!! | ATTATTTAAAGTAAACACTA+GGG | - | chr3_3:49532985-49533004 | None:intergenic | 15.0% |
!!! | AATTATTTAAAGTAAACACT+AGG | - | chr3_3:49532915-49532934 | None:intergenic | 15.0% |
!! | TTATTAAAGAAAATAAGTCA+GGG | - | chr3_3:49533349-49533368 | None:intergenic | 15.0% |
!! | ATTATTAAAGAAAATAAGTC+AGG | - | chr3_3:49533350-49533369 | None:intergenic | 15.0% |
!! | TTAACTATTTGCTTATATAT+AGG | + | chr3_3:49533533-49533552 | Msa0456130:intron | 15.0% |
!! | TAACTATTTGCTTATATATA+GGG | + | chr3_3:49533534-49533553 | Msa0456130:intron | 15.0% |
!! | ATAGAATAAGAAATAAAAAG+TGG | + | chr3_3:49535091-49535110 | Msa0456130:intron | 15.0% |
!! | TATACTATCTACAATTAATA+AGG | + | chr3_3:49535439-49535458 | Msa0456130:intron | 15.0% |
!!! | CATTTTGAAACAAATTTTAT+TGG | + | chr3_3:49535845-49535864 | Msa0456130:intron | 15.0% |
!!! | ATAAGTAAAATTGACTTTTT+AGG | + | chr3_3:49536401-49536420 | Msa0456130:intron | 15.0% |
!!! | ATTTTGCTTATATTTTGAAA+CGG | + | chr3_3:49536498-49536517 | Msa0456130:intron | 15.0% |
!! | AAAAAATTAATGGAGAGATT+TGG | + | chr3_3:49528023-49528042 | Msa0456130:CDS | 20.0% |
!!! | TTTCTTTTCAGTATACATAA+TGG | + | chr3_3:49528346-49528365 | Msa0456130:intron | 20.0% |
!!! | TTCTTTTCAGTATACATAAT+GGG | + | chr3_3:49528347-49528366 | Msa0456130:intron | 20.0% |
!! | AAAGAACTTCATCAATAAAT+TGG | + | chr3_3:49528497-49528516 | Msa0456130:CDS | 20.0% |
!! | TTTATGAGAATTGTGAAAAA+AGG | - | chr3_3:49528574-49528593 | None:intergenic | 20.0% |
!!! | TTAAAGTTCATGTTTTCTAA+AGG | + | chr3_3:49528934-49528953 | Msa0456130:intron | 20.0% |
!!! | TAAAGTTCATGTTTTCTAAA+GGG | + | chr3_3:49528935-49528954 | Msa0456130:intron | 20.0% |
!!! | TATTTTGAAGGAAATATCTA+TGG | + | chr3_3:49529053-49529072 | Msa0456130:intron | 20.0% |
!! | AGCATTATTAATGTAAATCA+TGG | + | chr3_3:49529205-49529224 | Msa0456130:intron | 20.0% |
!!! | AATCATGGTCAATTTTTTTT+AGG | + | chr3_3:49529220-49529239 | Msa0456130:intron | 20.0% |
!!! | ATCATGGTCAATTTTTTTTA+GGG | + | chr3_3:49529221-49529240 | Msa0456130:intron | 20.0% |
!!! | ATTTTGAACTCTCTTATTTT+GGG | - | chr3_3:49529398-49529417 | None:intergenic | 20.0% |
!!! | TATTTTGAACTCTCTTATTT+TGG | - | chr3_3:49529399-49529418 | None:intergenic | 20.0% |
!! | AAATAAGAGAGTTCAAAATA+AGG | + | chr3_3:49529399-49529418 | Msa0456130:intron | 20.0% |
!! | GTTTAGAGAAGAAAAAAAAT+AGG | - | chr3_3:49529548-49529567 | None:intergenic | 20.0% |
!!! | TTTTAGATGAAATACAGTAT+TGG | + | chr3_3:49529692-49529711 | Msa0456130:intron | 20.0% |
!!! | CATTAAATTGTTGCATTTTA+GGG | + | chr3_3:49529726-49529745 | Msa0456130:intron | 20.0% |
!!! | ATTAAATTGTTGCATTTTAG+GGG | + | chr3_3:49529727-49529746 | Msa0456130:intron | 20.0% |
!!! | TATTTTGATAGATTTGAGTA+GGG | - | chr3_3:49529805-49529824 | None:intergenic | 20.0% |
!!! | TTTTTCGTTAACTTTAATAG+TGG | + | chr3_3:49530064-49530083 | Msa0456130:intron | 20.0% |
!!! | TCTGAAATAAAATAAGAGAA+AGG | - | chr3_3:49530341-49530360 | None:intergenic | 20.0% |
!!! | CAAAGTTTAAATTCTAGAAA+TGG | + | chr3_3:49530708-49530727 | Msa0456130:intron | 20.0% |
!!! | AAATTCTAGAAATGGAATTT+AGG | + | chr3_3:49530716-49530735 | Msa0456130:intron | 20.0% |
!! | AATTCATGTATGTGATAATA+AGG | + | chr3_3:49530893-49530912 | Msa0456130:intron | 20.0% |
!! | AGATGATAATCAATGTTAAA+CGG | + | chr3_3:49531041-49531060 | Msa0456130:intron | 20.0% |
!!! | ATTTTTATATCGTTTTCTCA+TGG | - | chr3_3:49531086-49531105 | None:intergenic | 20.0% |
!! | TTTACACTCAATTATTTCAT+TGG | + | chr3_3:49531504-49531523 | Msa0456130:intron | 20.0% |
!!! | GAAAAAAAAATCACGAATTT+TGG | - | chr3_3:49531552-49531571 | None:intergenic | 20.0% |
!!! | TGAAAATTTTCATTCATCAT+CGG | - | chr3_3:49531994-49532013 | None:intergenic | 20.0% |
!!! | AATTTACTTTAAAGGAAGAA+TGG | + | chr3_3:49532439-49532458 | Msa0456130:intron | 20.0% |
!! | CTGTAATATTTGTTTGTATT+CGG | + | chr3_3:49532863-49532882 | Msa0456130:intron | 20.0% |
!!! | ATTATTTAAAGTAAACACTG+GGG | - | chr3_3:49532914-49532933 | None:intergenic | 20.0% |
!!! | CAATTATTTAAAGTAAACAC+TGG | - | chr3_3:49532916-49532935 | None:intergenic | 20.0% |
!!! | TTATTTAAAGTAAACACTAG+GGG | - | chr3_3:49532984-49533003 | None:intergenic | 20.0% |
!! | AATTATTAAAGCAAATAGTG+AGG | - | chr3_3:49533143-49533162 | None:intergenic | 20.0% |
!! | TAATTTCACATACTATTCTA+TGG | + | chr3_3:49533201-49533220 | Msa0456130:intron | 20.0% |
!! | AGTCACGTATAATTATTAAT+GGG | - | chr3_3:49533285-49533304 | None:intergenic | 20.0% |
!! | AAGTCACGTATAATTATTAA+TGG | - | chr3_3:49533286-49533305 | None:intergenic | 20.0% |
!! | TATTAAAGAAAATAAGTCAG+GGG | - | chr3_3:49533348-49533367 | None:intergenic | 20.0% |
!!! | ATAGTGGAGATAATTATTAA+TGG | - | chr3_3:49533387-49533406 | None:intergenic | 20.0% |
!! | ATAATAGTTAAAATCAGTGA+TGG | - | chr3_3:49533442-49533461 | None:intergenic | 20.0% |
!!! | ATTCATATTTGGTTTTGATA+TGG | + | chr3_3:49533649-49533668 | Msa0456130:intron | 20.0% |
!!! | ATGTTTTGCAAATAACTTAT+CGG | - | chr3_3:49534471-49534490 | None:intergenic | 20.0% |
!! | ATTACATAATATGATTGTTG+AGG | + | chr3_3:49534619-49534638 | Msa0456130:intron | 20.0% |
!! | AATAAGAAATAAAAAGTGGT+GGG | + | chr3_3:49535095-49535114 | Msa0456130:intron | 20.0% |
!! | TGTTGAATTAAATTTACCAT+TGG | + | chr3_3:49535228-49535247 | Msa0456130:intron | 20.0% |
!! | AAGAAACAATAATTATGAGA+CGG | - | chr3_3:49535308-49535327 | None:intergenic | 20.0% |
!! | GGATGAAATTCAATAAATAA+GGG | - | chr3_3:49535408-49535427 | None:intergenic | 20.0% |
!! | TGGATGAAATTCAATAAATA+AGG | - | chr3_3:49535409-49535428 | None:intergenic | 20.0% |
!! | ATATTTATGCACGATTATTA+GGG | - | chr3_3:49535519-49535538 | None:intergenic | 20.0% |
!! | AATATTTATGCACGATTATT+AGG | - | chr3_3:49535520-49535539 | None:intergenic | 20.0% |
!! | AATAGTTGATTAGGATAATT+TGG | - | chr3_3:49535708-49535727 | None:intergenic | 20.0% |
!! | AAATTATCCTAATCAACTAT+TGG | + | chr3_3:49535707-49535726 | Msa0456130:intron | 20.0% |
!! | TGTAACATAGTATTAATTGA+AGG | + | chr3_3:49535770-49535789 | Msa0456130:intron | 20.0% |
!! | GTAACATAGTATTAATTGAA+GGG | + | chr3_3:49535771-49535790 | Msa0456130:intron | 20.0% |
!! | AGAAAAAGTTATTATTGCAT+TGG | + | chr3_3:49535805-49535824 | Msa0456130:intron | 20.0% |
!! | AAGCTAAGTTAAAATTTCAT+TGG | - | chr3_3:49535999-49536018 | None:intergenic | 20.0% |
!!! | TCAATGTTGTTAATTTGTAT+TGG | - | chr3_3:49536058-49536077 | None:intergenic | 20.0% |
!! | TCATAAAATCACTAATATGA+TGG | - | chr3_3:49536108-49536127 | None:intergenic | 20.0% |
!!! | TAGTGATTTTATGAAATTAG+AGG | + | chr3_3:49536114-49536133 | Msa0456130:intron | 20.0% |
!! | TACTTATATTTAAAAACGGA+GGG | - | chr3_3:49536388-49536407 | None:intergenic | 20.0% |
!! | TTACTTATATTTAAAAACGG+AGG | - | chr3_3:49536389-49536408 | None:intergenic | 20.0% |
!! | GTTTATTGGAAAAAAATCAA+TGG | + | chr3_3:49537210-49537229 | Msa0456130:CDS | 20.0% |
!! | AAAGAACTTCATCAATAAAT+TGG | + | chr3_3:49528497-49528516 | Msa0456130:CDS | 20.0% |
! | TTTACTGAAAATTACTCTCT+TGG | + | chr3_3:49528067-49528086 | Msa0456130:CDS | 25.0% |
! | AAGTATGTATACATCAAACT+TGG | - | chr3_3:49528131-49528150 | None:intergenic | 25.0% |
! | AAGTTTGATGTATACATACT+TGG | + | chr3_3:49528130-49528149 | Msa0456130:intron | 25.0% |
! | AAATTACTTCGTTGTTATGA+GGG | + | chr3_3:49528801-49528820 | Msa0456130:CDS | 25.0% |
! | ACTGATAAACAAGAAAGATT+TGG | + | chr3_3:49528908-49528927 | Msa0456130:CDS | 25.0% |
! | TAAGTGATAATCTTCACATT+TGG | + | chr3_3:49529006-49529025 | Msa0456130:intron | 25.0% |
! | TTCATTGTGTTCATACATAA+CGG | - | chr3_3:49529175-49529194 | None:intergenic | 25.0% |
!!! | TCATGGTCAATTTTTTTTAG+GGG | + | chr3_3:49529222-49529241 | Msa0456130:intron | 25.0% |
!!! | ATTTTTTTTAGGGGTAATCA+TGG | + | chr3_3:49529231-49529250 | Msa0456130:intron | 25.0% |
!!! | GTTGAACTTTGTTTTTGAAT+AGG | + | chr3_3:49529352-49529371 | Msa0456130:intron | 25.0% |
!!! | TTTTAAGTGTTAGCAATACA+AGG | + | chr3_3:49529442-49529461 | Msa0456130:intron | 25.0% |
! | CTTATTTCATGATTTCTTGT+AGG | - | chr3_3:49529491-49529510 | None:intergenic | 25.0% |
! | ACTAATGAAACCAGTTAAAA+TGG | + | chr3_3:49529593-49529612 | Msa0456130:intron | 25.0% |
! | CTAATGAAACCAGTTAAAAT+GGG | + | chr3_3:49529594-49529613 | Msa0456130:intron | 25.0% |
!! | TTTGATAGATTTGGAACTTT+AGG | - | chr3_3:49529636-49529655 | None:intergenic | 25.0% |
!!! | ACAGTGTATTTTGATAGATT+TGG | - | chr3_3:49529645-49529664 | None:intergenic | 25.0% |
! | CCTAAAATGCAACAATTTAA+TGG | - | chr3_3:49529728-49529747 | None:intergenic | 25.0% |
!! | CCATTAAATTGTTGCATTTT+AGG | + | chr3_3:49529725-49529744 | Msa0456130:intron | 25.0% |
!! | TTAAATTGTTGCATTTTAGG+GGG | + | chr3_3:49529728-49529747 | Msa0456130:intron | 25.0% |
!!! | ATTTTGATAGATTTGAGTAG+GGG | - | chr3_3:49529804-49529823 | None:intergenic | 25.0% |
!!! | GTATTTTGATAGATTTGAGT+AGG | - | chr3_3:49529806-49529825 | None:intergenic | 25.0% |
!!! | TCACGCTTCATTAATTTTTT+AGG | + | chr3_3:49529936-49529955 | Msa0456130:intron | 25.0% |
!!! | AATTTTTTAGGTTTGTTGCA+AGG | + | chr3_3:49529948-49529967 | Msa0456130:intron | 25.0% |
!! | TTAAAATTCTAGAGAGAGAT+AGG | + | chr3_3:49530368-49530387 | Msa0456130:intron | 25.0% |
!! | TAAAATTCTAGAGAGAGATA+GGG | + | chr3_3:49530369-49530388 | Msa0456130:intron | 25.0% |
! | TTTCTCTATAAATAGAGACT+TGG | + | chr3_3:49531568-49531587 | Msa0456130:intron | 25.0% |
! | GACTAAAACTTCAAAAGAAA+GGG | - | chr3_3:49531655-49531674 | None:intergenic | 25.0% |
! | AGACTAAAACTTCAAAAGAA+AGG | - | chr3_3:49531656-49531675 | None:intergenic | 25.0% |
!! | TTAGTCTTTGATTAGTGAAA+TGG | + | chr3_3:49531669-49531688 | Msa0456130:intron | 25.0% |
!! | TTTGGTTGAGAAATTGATTT+GGG | - | chr3_3:49531840-49531859 | None:intergenic | 25.0% |
!!! | TTTTGGTTGAGAAATTGATT+TGG | - | chr3_3:49531841-49531860 | None:intergenic | 25.0% |
! | TATCTCATCATAGATCTATA+TGG | - | chr3_3:49531937-49531956 | None:intergenic | 25.0% |
! | ATCGGAATATAACCATTAAA+TGG | - | chr3_3:49531976-49531995 | None:intergenic | 25.0% |
!! | AATGAAAATTTTCAGAGTCT+TGG | + | chr3_3:49532000-49532019 | Msa0456130:intron | 25.0% |
! | CTTATTTGTGATGAAAATTC+AGG | - | chr3_3:49532033-49532052 | None:intergenic | 25.0% |
!! | TTTTCATCACAAATAAGTTG+TGG | + | chr3_3:49532036-49532055 | Msa0456130:intron | 25.0% |
! | AAAATTTGGCGTTAATTAGT+GGG | + | chr3_3:49532145-49532164 | Msa0456130:intron | 25.0% |
!! | TTATTTAAAGTAAACACTGG+GGG | - | chr3_3:49532913-49532932 | None:intergenic | 25.0% |
!! | ATAGTTTGTGAAATAAGTCA+CGG | - | chr3_3:49533058-49533077 | None:intergenic | 25.0% |
! | AAAGTTTGTGAAATAACTCA+CGG | - | chr3_3:49533182-49533201 | None:intergenic | 25.0% |
! | ATTAAAGAAAATAAGTCAGG+GGG | - | chr3_3:49533347-49533366 | None:intergenic | 25.0% |
! | TGGTATAATTATTGAAGTCA+CGG | - | chr3_3:49533504-49533523 | None:intergenic | 25.0% |
! | AGATTTGTGATATTAGAAGT+AGG | - | chr3_3:49533567-49533586 | None:intergenic | 25.0% |
!! | ATGAATGCAATTTGAGATAT+TGG | - | chr3_3:49533635-49533654 | None:intergenic | 25.0% |
! | TCTCAAATTGCATTCATATT+TGG | + | chr3_3:49533638-49533657 | Msa0456130:intron | 25.0% |
! | ATCGATGAATACATCAAAAT+AGG | + | chr3_3:49534049-49534068 | Msa0456130:intron | 25.0% |
!! | TGTTTTGCAAATAACTTATC+GGG | - | chr3_3:49534470-49534489 | None:intergenic | 25.0% |
! | TTATTTGCAAAACATCAAGA+GGG | + | chr3_3:49534476-49534495 | Msa0456130:intron | 25.0% |
! | GAATAAGAAATAAAAAGTGG+TGG | + | chr3_3:49535094-49535113 | Msa0456130:intron | 25.0% |
! | ATAAGAAATAAAAAGTGGTG+GGG | + | chr3_3:49535096-49535115 | Msa0456130:intron | 25.0% |
! | ATTAAATTTACCATTGGACA+TGG | + | chr3_3:49535234-49535253 | Msa0456130:intron | 25.0% |
!! | ATGGAGTACTATATACATAT+AGG | - | chr3_3:49535285-49535304 | None:intergenic | 25.0% |
!! | ATAAATAAGGGTATAACAGT+GGG | - | chr3_3:49535396-49535415 | None:intergenic | 25.0% |
!! | AATAAATAAGGGTATAACAG+TGG | - | chr3_3:49535397-49535416 | None:intergenic | 25.0% |
! | TTGAAAGAACAAAAAACGAA+AGG | - | chr3_3:49535965-49535984 | None:intergenic | 25.0% |
!! | TTTTTGTTCTTTCAAAAGCT+TGG | + | chr3_3:49535970-49535989 | Msa0456130:intron | 25.0% |
!! | TTTTGTTCTTTCAAAAGCTT+GGG | + | chr3_3:49535971-49535990 | Msa0456130:intron | 25.0% |
! | TTCCAGTTAATAATTACGTT+CGG | - | chr3_3:49536027-49536046 | None:intergenic | 25.0% |
!! | TGATTTTATGAAATTAGAGG+AGG | + | chr3_3:49536117-49536136 | Msa0456130:intron | 25.0% |
! | TTATTAGAGTAGAGATTAAG+AGG | + | chr3_3:49536173-49536192 | Msa0456130:intron | 25.0% |
! | TATTAGAGTAGAGATTAAGA+GGG | + | chr3_3:49536174-49536193 | Msa0456130:intron | 25.0% |
! | TCATCATTTAATGATGAATG+TGG | + | chr3_3:49536425-49536444 | Msa0456130:intron | 25.0% |
! | GATGTATGTGGTTAATAATA+TGG | - | chr3_3:49536452-49536471 | None:intergenic | 25.0% |
! | CATTCATTTAATGATGTATG+TGG | - | chr3_3:49536464-49536483 | None:intergenic | 25.0% |
!!! | TAGACACACATTCATTTTTT+TGG | - | chr3_3:49536559-49536578 | None:intergenic | 25.0% |
! | GTCATTGAAATACTACAAAT+CGG | + | chr3_3:49536589-49536608 | Msa0456130:intron | 25.0% |
! | GAAGATGTAATAATGACATT+AGG | + | chr3_3:49536646-49536665 | Msa0456130:intron | 25.0% |
! | GATTATGTATTTAATTGTGG+TGG | - | chr3_3:49536729-49536748 | None:intergenic | 25.0% |
! | GGAGATTATGTATTTAATTG+TGG | - | chr3_3:49536732-49536751 | None:intergenic | 25.0% |
!!! | ATGATTTTAAAGAAACGGAT+GGG | - | chr3_3:49536798-49536817 | None:intergenic | 25.0% |
!!! | AATGATTTTAAAGAAACGGA+TGG | - | chr3_3:49536799-49536818 | None:intergenic | 25.0% |
!!! | GGAGAATGATTTTAAAGAAA+CGG | - | chr3_3:49536803-49536822 | None:intergenic | 25.0% |
! | TAAAAATTAAAGAACCCCTT+TGG | - | chr3_3:49537100-49537119 | None:intergenic | 25.0% |
! | AAATACCAAGTAAGTTTACT+AGG | + | chr3_3:49537124-49537143 | Msa0456130:CDS | 25.0% |
! | TTTACTGAAAATTACTCTCT+TGG | + | chr3_3:49528067-49528086 | Msa0456130:CDS | 25.0% |
! | AAATATGTGTACATCAAACA+TGG | - | chr3_3:49537328-49537347 | None:intergenic | 25.0% |
!! | TTTTAGATGAATGGCTTAAT+CGG | + | chr3_3:49537442-49537461 | Msa0456130:CDS | 25.0% |
! | TTTCTTGTCAGTATACATAA+TGG | + | chr3_3:49537543-49537562 | Msa0456130:intron | 25.0% |
! | TTGATGAGAATTGTGAAAAA+AGG | - | chr3_3:49537758-49537777 | None:intergenic | 25.0% |
! | GCTGTGATTATAAATTATGA+TGG | + | chr3_3:49537849-49537868 | Msa0456130:intron | 25.0% |
!! | TCAATAATCCCTTTTAAATC+TGG | - | chr3_3:49537906-49537925 | None:intergenic | 25.0% |
! | AAATTACTTCGTTCTTATGA+GGG | + | chr3_3:49537978-49537997 | Msa0456130:CDS | 25.0% |
GCACTAAATGGAAAGTTTAT+TGG | + | chr3_3:49527999-49528018 | Msa0456130:CDS | 30.0% | |
!! | TTGGTGGTGTTTGAATATAA+AGG | + | chr3_3:49528100-49528119 | Msa0456130:CDS | 30.0% |
!! | AATCTATTTCTAGTGCATTC+TGG | - | chr3_3:49528156-49528175 | None:intergenic | 30.0% |
! | TGATGAATCAGTTGAGATTT+TGG | + | chr3_3:49528228-49528247 | Msa0456130:CDS | 30.0% |
! | TTTTGGATGAATGGCTTAAT+CGG | + | chr3_3:49528245-49528264 | Msa0456130:CDS | 30.0% |
!! | AGTGTGTACCACTTTTAAAT+GGG | + | chr3_3:49528718-49528737 | Msa0456130:intron | 30.0% |
TCAATAACCCCATTTAAAAG+TGG | - | chr3_3:49528729-49528748 | None:intergenic | 30.0% | |
GAAATTACTTCGTTGTTATG+AGG | + | chr3_3:49528800-49528819 | Msa0456130:CDS | 30.0% | |
!!! | ACATTGTTGTTTTGAGTGAT+AGG | + | chr3_3:49528982-49529001 | Msa0456130:intron | 30.0% |
TCATTGTGTTCATACATAAC+GGG | - | chr3_3:49529174-49529193 | None:intergenic | 30.0% | |
GTACCCATTTCCAAAATATT+GGG | + | chr3_3:49529464-49529483 | Msa0456130:intron | 30.0% | |
! | TTTTTCTTCTCTAAACCTAG+TGG | + | chr3_3:49529552-49529571 | Msa0456130:intron | 30.0% |
GGTAAATAAAATGATCCACT+AGG | - | chr3_3:49529570-49529589 | None:intergenic | 30.0% | |
! | TTAACTGGTTTCATTAGTCT+AGG | - | chr3_3:49529591-49529610 | None:intergenic | 30.0% |
!! | TAAATTGTTGCATTTTAGGG+GGG | + | chr3_3:49529729-49529748 | Msa0456130:intron | 30.0% |
! | TTTTGATAGATTTGAGTAGG+GGG | - | chr3_3:49529803-49529822 | None:intergenic | 30.0% |
TCAAAATACACTACTGAACA+CGG | + | chr3_3:49529817-49529836 | Msa0456130:intron | 30.0% | |
ATTTCTTGAGTTAAGACACA+CGG | + | chr3_3:49529895-49529914 | Msa0456130:intron | 30.0% | |
GAAGAGAAGTTATGAACATT+TGG | + | chr3_3:49529984-49530003 | Msa0456130:intron | 30.0% | |
! | TCGTTAACTTTAATAGTGGA+CGG | + | chr3_3:49530068-49530087 | Msa0456130:intron | 30.0% |
!! | GCATGATTTTTGAAGAACAA+GGG | + | chr3_3:49530187-49530206 | Msa0456130:intron | 30.0% |
!!! | TCTTTTCTTTCAAGTTTGCA+AGG | + | chr3_3:49530481-49530500 | Msa0456130:intron | 30.0% |
GTAGGTAAATCTCTATTGTT+AGG | + | chr3_3:49530519-49530538 | Msa0456130:intron | 30.0% | |
CTTTGATAGATGATTATCGT+AGG | - | chr3_3:49530693-49530712 | None:intergenic | 30.0% | |
! | AAATCGTCGATTAAACGATA+CGG | + | chr3_3:49530798-49530817 | Msa0456130:intron | 30.0% |
TTCATGTCTAAATAATGCTG+TGG | - | chr3_3:49530830-49530849 | None:intergenic | 30.0% | |
! | GTGTTGAATTGATTGTTGTT+GGG | - | chr3_3:49531697-49531716 | None:intergenic | 30.0% |
! | TGGGTAATCAGAAGAATTTT+GGG | - | chr3_3:49531719-49531738 | None:intergenic | 30.0% |
! | ATGGGTAATCAGAAGAATTT+TGG | - | chr3_3:49531720-49531739 | None:intergenic | 30.0% |
!! | TGGGATTTTGGTAGTTAAAT+GGG | - | chr3_3:49531738-49531757 | None:intergenic | 30.0% |
!! | TTGGGATTTTGGTAGTTAAA+TGG | - | chr3_3:49531739-49531758 | None:intergenic | 30.0% |
!!! | GTTGATAATTGTTGGGATTT+TGG | - | chr3_3:49531750-49531769 | None:intergenic | 30.0% |
!! | TTTGGGTGTTGATAATTGTT+GGG | - | chr3_3:49531757-49531776 | None:intergenic | 30.0% |
!! | ATTTGGGTGTTGATAATTGT+TGG | - | chr3_3:49531758-49531777 | None:intergenic | 30.0% |
!! | GTTGGTTTGGAAATTGATTT+GGG | - | chr3_3:49531807-49531826 | None:intergenic | 30.0% |
!! | TGTTGGTTTGGAAATTGATT+TGG | - | chr3_3:49531808-49531827 | None:intergenic | 30.0% |
!!! | AGAAATTGATTTGGGTTTTG+AGG | - | chr3_3:49531832-49531851 | None:intergenic | 30.0% |
! | TTTGAGGCAAAACCAAAATT+AGG | - | chr3_3:49531877-49531896 | None:intergenic | 30.0% |
CTATATGGATGAAAGTTGTT+TGG | - | chr3_3:49531922-49531941 | None:intergenic | 30.0% | |
GGAATATAACCATTAAATGG+AGG | - | chr3_3:49531973-49531992 | None:intergenic | 30.0% | |
ATGGAACACTGAACAAAATT+TGG | + | chr3_3:49532131-49532150 | Msa0456130:intron | 30.0% | |
CAAAATTTGGCGTTAATTAG+TGG | + | chr3_3:49532144-49532163 | Msa0456130:intron | 30.0% | |
! | ATTAGTGGGTGGATAAAATA+TGG | + | chr3_3:49532159-49532178 | Msa0456130:intron | 30.0% |
AAAAGGAAAAAAGAAAGGCA+AGG | + | chr3_3:49532599-49532618 | Msa0456130:intron | 30.0% | |
! | GTTTTTCTCTTGTTAAACTG+CGG | - | chr3_3:49532730-49532749 | None:intergenic | 30.0% |
AAAAGATCTGTTGGAAAACT+TGG | + | chr3_3:49532812-49532831 | Msa0456130:intron | 30.0% | |
! | TAGTTTGTGAAATAAGTCAC+GGG | - | chr3_3:49533057-49533076 | None:intergenic | 30.0% |
AAGTTTGTGAAATAACTCAC+GGG | - | chr3_3:49533181-49533200 | None:intergenic | 30.0% | |
TTAAAGAAAATAAGTCAGGG+GGG | - | chr3_3:49533346-49533365 | None:intergenic | 30.0% | |
ATAATTATTGAAGTCACGGA+TGG | - | chr3_3:49533500-49533519 | None:intergenic | 30.0% | |
CAAATAGTTAAAGTCACAGA+TGG | - | chr3_3:49533524-49533543 | None:intergenic | 30.0% | |
TCTGATGCAATTTGTGATAT+TGG | - | chr3_3:49533605-49533624 | None:intergenic | 30.0% | |
AACATTACATCGTCATATGT+GGG | - | chr3_3:49533854-49533873 | None:intergenic | 30.0% | |
AAACATTACATCGTCATATG+TGG | - | chr3_3:49533855-49533874 | None:intergenic | 30.0% | |
AGTAGTTATCACTACTTGAA+AGG | - | chr3_3:49533928-49533947 | None:intergenic | 30.0% | |
AATAGGAAGTAGTACAACAT+TGG | + | chr3_3:49534066-49534085 | Msa0456130:intron | 30.0% | |
TAACATGTAGTATTCCTTGT+AGG | - | chr3_3:49534168-49534187 | None:intergenic | 30.0% | |
TACTACATGTTAGTGAAATG+CGG | + | chr3_3:49534176-49534195 | Msa0456130:intron | 30.0% | |
GAAAAATTGTCCTAAAGCAT+GGG | + | chr3_3:49534246-49534265 | Msa0456130:intron | 30.0% | |
!! | CTAATTGATTTGACGAAAGT+TGG | - | chr3_3:49534431-49534450 | None:intergenic | 30.0% |
GTTATTTGCAAAACATCAAG+AGG | + | chr3_3:49534475-49534494 | Msa0456130:intron | 30.0% | |
! | TTCAATTTTTACCTCTCCAA+GGG | - | chr3_3:49535140-49535159 | None:intergenic | 30.0% |
! | ATTCAATTTTTACCTCTCCA+AGG | - | chr3_3:49535141-49535160 | None:intergenic | 30.0% |
TTAAGAGAGAGAAAATGATG+TGG | + | chr3_3:49535171-49535190 | Msa0456130:intron | 30.0% | |
! | AGTGTTGGGAATTAAAAAAG+TGG | + | chr3_3:49535194-49535213 | Msa0456130:intron | 30.0% |
GTGTTGGGAATTAAAAAAGT+GGG | + | chr3_3:49535195-49535214 | Msa0456130:intron | 30.0% | |
!! | ATTAAAAAAGTGGGTGTTGA+AGG | + | chr3_3:49535204-49535223 | Msa0456130:intron | 30.0% |
AACAATAATTATGAGACGGA+TGG | - | chr3_3:49535304-49535323 | None:intergenic | 30.0% | |
AGATAGTATAGTAGTCAAGT+TGG | - | chr3_3:49535429-49535448 | None:intergenic | 30.0% | |
AGACAAACCAATAGTTGATT+AGG | - | chr3_3:49535717-49535736 | None:intergenic | 30.0% | |
!! | AAACGACACTCATTTTGAAA+CGG | + | chr3_3:49535871-49535890 | Msa0456130:intron | 30.0% |
AACCGAACGTAATTATTAAC+TGG | + | chr3_3:49536022-49536041 | Msa0456130:intron | 30.0% | |
AAATTAGAGGAGGATAATGA+AGG | + | chr3_3:49536127-49536146 | Msa0456130:intron | 30.0% | |
ATTAGAGTAGAGATTAAGAG+GGG | + | chr3_3:49536175-49536194 | Msa0456130:intron | 30.0% | |
!!! | TGCTTATATTTTGAAACGGA+TGG | + | chr3_3:49536502-49536521 | Msa0456130:intron | 30.0% |
GTTTACCATTAACAATGAAG+AGG | + | chr3_3:49536687-49536706 | Msa0456130:intron | 30.0% | |
TTCTCCAAACTAATCTTCAA+AGG | + | chr3_3:49536817-49536836 | Msa0456130:intron | 30.0% | |
! | CAATCCTTTGAAGATTAGTT+TGG | - | chr3_3:49536824-49536843 | None:intergenic | 30.0% |
! | CTAAAGTAAACTGTACTGAT+AGG | - | chr3_3:49536855-49536874 | None:intergenic | 30.0% |
CATGTTCTATTCCTATAGAA+GGG | + | chr3_3:49537042-49537061 | Msa0456130:intron | 30.0% | |
AAATTAAACGTCCCTTCTAT+AGG | - | chr3_3:49537056-49537075 | None:intergenic | 30.0% | |
! | ACCTTTTTATTAGTGACCAA+AGG | + | chr3_3:49537081-49537100 | Msa0456130:intron | 30.0% |
! | CCTTTTTATTAGTGACCAAA+GGG | + | chr3_3:49537082-49537101 | Msa0456130:intron | 30.0% |
! | CTTTTTATTAGTGACCAAAG+GGG | + | chr3_3:49537083-49537102 | Msa0456130:intron | 30.0% |
GCACTAAATGGAAAGTTTAT+TGG | + | chr3_3:49527999-49528018 | Msa0456130:CDS | 30.0% | |
AAAAAATCAATGGAGAGATC+TGG | + | chr3_3:49537220-49537239 | Msa0456130:CDS | 30.0% | |
! | CACTTGAGATTTTAGATGAA+TGG | + | chr3_3:49537433-49537452 | Msa0456130:CDS | 30.0% |
TGTGTGTAATGTAAAACTCT+TGG | - | chr3_3:49537631-49537650 | None:intergenic | 30.0% | |
TACATTACACACATATATGC+AGG | + | chr3_3:49537638-49537657 | Msa0456130:intron | 30.0% | |
TTCATCAATAAATTGGCCAA+AGG | + | chr3_3:49537688-49537707 | Msa0456130:CDS | 30.0% | |
GTATGTTCTACCAGATTAAT+TGG | - | chr3_3:49537782-49537801 | None:intergenic | 30.0% | |
AGTCTGTACCAGATTTAAAA+GGG | + | chr3_3:49537895-49537914 | Msa0456130:intron | 30.0% | |
AAAAGGGATTATTGAGAACA+AGG | + | chr3_3:49537911-49537930 | Msa0456130:CDS | 30.0% | |
GAAATTACTTCGTTCTTATG+AGG | + | chr3_3:49537977-49537996 | Msa0456130:CDS | 30.0% | |
TCTGTAGTCTTTATCAACAC+TGG | - | chr3_3:49527977-49527996 | None:intergenic | 35.0% | |
! | GTGTTGATAAAGACTACAGA+TGG | + | chr3_3:49527977-49527996 | Msa0456130:CDS | 35.0% |
!! | TGGAGAGATTTGGTTTGAAA+AGG | + | chr3_3:49528033-49528052 | Msa0456130:CDS | 35.0% |
!! | GGAGAGATTTGGTTTGAAAA+GGG | + | chr3_3:49528034-49528053 | Msa0456130:CDS | 35.0% |
!! | AGATTTGGTTTGAAAAGGGT+TGG | + | chr3_3:49528038-49528057 | Msa0456130:CDS | 35.0% |
GAAAATTACTCTCTTGGACA+TGG | + | chr3_3:49528073-49528092 | Msa0456130:CDS | 35.0% | |
! | CAGTTGAGATTTTGGATGAA+TGG | + | chr3_3:49528236-49528255 | Msa0456130:CDS | 35.0% |
ACATAAGAAAGTTCGAGGTT+TGG | + | chr3_3:49528309-49528328 | Msa0456130:intron | 35.0% | |
TACATTGCACACATATTTGC+AGG | + | chr3_3:49528454-49528473 | Msa0456130:intron | 35.0% | |
TTCATCAATAAATTGGCCAC+AGG | + | chr3_3:49528504-49528523 | Msa0456130:CDS | 35.0% | |
CTACTCATCTGGTAGAAAAT+CGG | + | chr3_3:49528596-49528615 | Msa0456130:CDS | 35.0% | |
!! | CAGTGTGTACCACTTTTAAA+TGG | + | chr3_3:49528717-49528736 | Msa0456130:intron | 35.0% |
!! | GTGTGTACCACTTTTAAATG+GGG | + | chr3_3:49528719-49528738 | Msa0456130:intron | 35.0% |
AAATGGGGTTATTGAGAACA+AGG | + | chr3_3:49528734-49528753 | Msa0456130:CDS | 35.0% | |
TGAGAACAAGGATAAGAATG+TGG | + | chr3_3:49528746-49528765 | Msa0456130:CDS | 35.0% | |
!!! | CTCTTGTTTTTAAGTGGAAG+TGG | + | chr3_3:49528855-49528874 | Msa0456130:CDS | 35.0% |
GGTACCCATTTCCAAAATAT+TGG | + | chr3_3:49529463-49529482 | Msa0456130:intron | 35.0% | |
!! | GGTCCCAATATTTTGGAAAT+GGG | - | chr3_3:49529470-49529489 | None:intergenic | 35.0% |
!! | AGGTCCCAATATTTTGGAAA+TGG | - | chr3_3:49529471-49529490 | None:intergenic | 35.0% |
! | TCTTGTAGGTCCCAATATTT+TGG | - | chr3_3:49529477-49529496 | None:intergenic | 35.0% |
ACCAGTTAAAATGGGATACT+AGG | + | chr3_3:49529602-49529621 | Msa0456130:intron | 35.0% | |
TCAAGAAATGTCACAGTGTT+TGG | - | chr3_3:49529763-49529782 | None:intergenic | 35.0% | |
TTTCTTGAGTTAAGACACAC+GGG | + | chr3_3:49529896-49529915 | Msa0456130:intron | 35.0% | |
!!! | TTTTTAGGTTTGTTGCAAGG+AGG | + | chr3_3:49529951-49529970 | Msa0456130:intron | 35.0% |
!!! | TTTTAGGTTTGTTGCAAGGA+GGG | + | chr3_3:49529952-49529971 | Msa0456130:intron | 35.0% |
!! | GAACATTTGGTTTGTTTGTG+TGG | + | chr3_3:49529997-49530016 | Msa0456130:intron | 35.0% |
TTTGTTTGTGTGGAACGTTT+GGG | + | chr3_3:49530007-49530026 | Msa0456130:intron | 35.0% | |
!! | GGCATGATTTTTGAAGAACA+AGG | + | chr3_3:49530186-49530205 | Msa0456130:intron | 35.0% |
ACATGAATAATGTTGTCGAG+TGG | + | chr3_3:49530843-49530862 | Msa0456130:intron | 35.0% | |
!! | AATAAAGGCGTAAAAGCGTT+AGG | - | chr3_3:49530952-49530971 | None:intergenic | 35.0% |
ATGTATAAGACCATCTCCAA+TGG | + | chr3_3:49531203-49531222 | Msa0456130:intron | 35.0% | |
TGTATAAGACCATCTCCAAT+GGG | + | chr3_3:49531204-49531223 | Msa0456130:intron | 35.0% | |
GTTGAAGACTATTGAACCAT+TGG | + | chr3_3:49531241-49531260 | Msa0456130:intron | 35.0% | |
CTTGTTGAAGACATATGACA+TGG | + | chr3_3:49531271-49531290 | Msa0456130:intron | 35.0% | |
GAGACTTGGATCATTTGATT+TGG | + | chr3_3:49531582-49531601 | Msa0456130:intron | 35.0% | |
! | GGTGTTGAATTGATTGTTGT+TGG | - | chr3_3:49531698-49531717 | None:intergenic | 35.0% |
! | GTTGGTTGGGAAATTGATTT+GGG | - | chr3_3:49531774-49531793 | None:intergenic | 35.0% |
! | TGTTGGTTGGGAAATTGATT+TGG | - | chr3_3:49531775-49531794 | None:intergenic | 35.0% |
!!! | GGAAATTGATTTGGGTTTTG+AGG | - | chr3_3:49531799-49531818 | None:intergenic | 35.0% |
!!! | TAGGCATGTTTTGAGGATTT+TGG | - | chr3_3:49531858-49531877 | None:intergenic | 35.0% |
! | CCAAAATTAGGCATGTTTTG+AGG | - | chr3_3:49531865-49531884 | None:intergenic | 35.0% |
! | CCTCAAAACATGCCTAATTT+TGG | + | chr3_3:49531862-49531881 | Msa0456130:intron | 35.0% |
GGATGAGTGATTGAAATTTG+AGG | - | chr3_3:49531893-49531912 | None:intergenic | 35.0% | |
! | ATGAAAGTTGTTTGGAACAG+AGG | - | chr3_3:49531914-49531933 | None:intergenic | 35.0% |
!! | TTAAATGGAGGTGTTTGAGA+TGG | - | chr3_3:49531961-49531980 | None:intergenic | 35.0% |
TCTCAAACACCTCCATTTAA+TGG | + | chr3_3:49531961-49531980 | Msa0456130:intron | 35.0% | |
TCATCACAAATAAGTTGTGG+TGG | + | chr3_3:49532039-49532058 | Msa0456130:intron | 35.0% | |
! | TTTTGTTCAGTGTTCCATGA+TGG | - | chr3_3:49532129-49532148 | None:intergenic | 35.0% |
CCCACATGCATATATTTCTT+GGG | - | chr3_3:49532409-49532428 | None:intergenic | 35.0% | |
CCCAAGAAATATATGCATGT+GGG | + | chr3_3:49532406-49532425 | Msa0456130:intron | 35.0% | |
TCCCACATGCATATATTTCT+TGG | - | chr3_3:49532410-49532429 | None:intergenic | 35.0% | |
AGAAATGAAGATGCAAGAGA+TGG | + | chr3_3:49532665-49532684 | Msa0456130:intron | 35.0% | |
TGACAGGAAAAAAGATCTGT+TGG | + | chr3_3:49532803-49532822 | Msa0456130:intron | 35.0% | |
AGTTTGTGAAATAAGTCACG+GGG | - | chr3_3:49533056-49533075 | None:intergenic | 35.0% | |
ATGGGCACAAAGTTAGTAAT+GGG | - | chr3_3:49533109-49533128 | None:intergenic | 35.0% | |
AATGGGCACAAAGTTAGTAA+TGG | - | chr3_3:49533110-49533129 | None:intergenic | 35.0% | |
AGTTTGTGAAATAACTCACG+GGG | - | chr3_3:49533180-49533199 | None:intergenic | 35.0% | |
! | ATTAATGGGCAAATAGTGTG+TGG | - | chr3_3:49533271-49533290 | None:intergenic | 35.0% |
! | TTGACAAATAGTGGAGATAG+TGG | - | chr3_3:49533467-49533486 | None:intergenic | 35.0% |
GAAGCAACATTGACAAATAG+TGG | - | chr3_3:49533476-49533495 | None:intergenic | 35.0% | |
TCATCGTCGAAAAAAACTAG+AGG | + | chr3_3:49533727-49533746 | Msa0456130:intron | 35.0% | |
AAAAAACTAGAGGAAGGTAG+TGG | + | chr3_3:49533737-49533756 | Msa0456130:intron | 35.0% | |
TGATATACCTTCTTTGTTGG+TGG | - | chr3_3:49533969-49533988 | None:intergenic | 35.0% | |
TGGTGATATACCTTCTTTGT+TGG | - | chr3_3:49533972-49533991 | None:intergenic | 35.0% | |
! | GTTGTGGTACATTTTGCTAA+TGG | - | chr3_3:49533992-49534011 | None:intergenic | 35.0% |
ACAATGCGAATGTTAGCATA+TGG | + | chr3_3:49534010-49534029 | Msa0456130:intron | 35.0% | |
TGCTTACTTAGATTCTGCAA+AGG | + | chr3_3:49534091-49534110 | Msa0456130:intron | 35.0% | |
TATTCCTTGTAGGTCATCTT+GGG | - | chr3_3:49534158-49534177 | None:intergenic | 35.0% | |
ACTACATGTTAGTGAAATGC+GGG | + | chr3_3:49534177-49534196 | Msa0456130:intron | 35.0% | |
GGAAAAATTGTCCTAAAGCA+TGG | + | chr3_3:49534245-49534264 | Msa0456130:intron | 35.0% | |
TTCACAAAGAAATTCACCCT+TGG | - | chr3_3:49534361-49534380 | None:intergenic | 35.0% | |
ATGACATACTATCTAGCTGA+TGG | + | chr3_3:49534389-49534408 | Msa0456130:intron | 35.0% | |
TGACGAAAGTTGGATAAGAA+GGG | - | chr3_3:49534421-49534440 | None:intergenic | 35.0% | |
TTGACGAAAGTTGGATAAGA+AGG | - | chr3_3:49534422-49534441 | None:intergenic | 35.0% | |
AAGCACATATGGACAAAGTT+TGG | + | chr3_3:49534818-49534837 | Msa0456130:intron | 35.0% | |
! | AAATAAAAAGTGGTGGGGTA+GGG | + | chr3_3:49535101-49535120 | Msa0456130:intron | 35.0% |
! | AGAAAATGATGTGGAGTGTT+GGG | + | chr3_3:49535180-49535199 | Msa0456130:intron | 35.0% |
CAAATTTAGACCATGTCCAA+TGG | - | chr3_3:49535247-49535266 | None:intergenic | 35.0% | |
GGTCTAAATTTGCACATGAT+AGG | + | chr3_3:49535255-49535274 | Msa0456130:intron | 35.0% | |
AAACGACTGATATTGTGAGA+TGG | + | chr3_3:49535540-49535559 | Msa0456130:intron | 35.0% | |
!! | AAGCGACACTCATTTTGAAA+CGG | - | chr3_3:49535625-49535644 | None:intergenic | 35.0% |
TTCCTTAATCTGTGTGCAAT+TGG | - | chr3_3:49535651-49535670 | None:intergenic | 35.0% | |
ATTGCACACAGATTAAGGAA+TGG | + | chr3_3:49535651-49535670 | Msa0456130:intron | 35.0% | |
GGAGGATAATGAAGGAAATT+TGG | + | chr3_3:49536135-49536154 | Msa0456130:intron | 35.0% | |
TAGAGATTAAGAGGGGAATA+AGG | + | chr3_3:49536182-49536201 | Msa0456130:intron | 35.0% | |
GCAAACCTCTTCATTGTTAA+TGG | - | chr3_3:49536695-49536714 | None:intergenic | 35.0% | |
ATGGATGAAAGAGTTTGAAG+TGG | - | chr3_3:49536753-49536772 | None:intergenic | 35.0% | |
ACTTCAAACTCTTTCATCCA+TGG | + | chr3_3:49536752-49536771 | Msa0456130:intron | 35.0% | |
!! | TTTTAAAGAAACGGATGGGA+AGG | - | chr3_3:49536794-49536813 | None:intergenic | 35.0% |
CCTTCTATAGGAATAGAACA+TGG | - | chr3_3:49537044-49537063 | None:intergenic | 35.0% | |
CCATGTTCTATTCCTATAGA+AGG | + | chr3_3:49537041-49537060 | Msa0456130:intron | 35.0% | |
CCCTTTGGTCACTAATAAAA+AGG | - | chr3_3:49537085-49537104 | None:intergenic | 35.0% | |
TGTCTCCTAGTAAACTTACT+TGG | - | chr3_3:49537132-49537151 | None:intergenic | 35.0% | |
AGTAAGTTTACTAGGAGACA+TGG | + | chr3_3:49537132-49537151 | Msa0456130:CDS | 35.0% | |
GAAAATTACTCTCTTGGACA+TGG | + | chr3_3:49528073-49528092 | Msa0456130:CDS | 35.0% | |
CTTATGTGTTTGAGGAGAAA+CGG | - | chr3_3:49537493-49537512 | None:intergenic | 35.0% | |
! | AACTCTTGGAGAGCATATTT+AGG | - | chr3_3:49537617-49537636 | None:intergenic | 35.0% |
TCTCATCAAGCCAATTAATC+TGG | + | chr3_3:49537769-49537788 | Msa0456130:CDS | 35.0% | |
TAATCTGGTAGAACATACTC+TGG | + | chr3_3:49537784-49537803 | Msa0456130:CDS | 35.0% | |
CAGTCTGTACCAGATTTAAA+AGG | + | chr3_3:49537894-49537913 | Msa0456130:intron | 35.0% | |
AGACTACAGATGGCACTAAA+TGG | + | chr3_3:49527987-49528006 | Msa0456130:CDS | 40.0% | |
TGAATGGCTTAATCGGAAGA+AGG | + | chr3_3:49528252-49528271 | Msa0456130:CDS | 40.0% | |
! | AGAAAGTTCGAGGTTTGGTT+TGG | + | chr3_3:49528314-49528333 | Msa0456130:intron | 40.0% |
TCTCATAAAGCCTACTCATC+TGG | + | chr3_3:49528585-49528604 | Msa0456130:CDS | 40.0% | |
! | CGATTTTCTACCAGATGAGT+AGG | - | chr3_3:49528598-49528617 | None:intergenic | 40.0% |
TCATCTGGTAGAAAATCGGA+TGG | + | chr3_3:49528600-49528619 | Msa0456130:CDS | 40.0% | |
TGGTAGAAAATCGGATGGTA+AGG | + | chr3_3:49528605-49528624 | Msa0456130:intron | 40.0% | |
AAGAATGTGGTACTGCAGAT+TGG | + | chr3_3:49528759-49528778 | Msa0456130:CDS | 40.0% | |
AGAATGTGGTACTGCAGATT+GGG | + | chr3_3:49528760-49528779 | Msa0456130:CDS | 40.0% | |
!!! | GGTTGGCTCTTGTTTTTAAG+TGG | + | chr3_3:49528849-49528868 | Msa0456130:CDS | 40.0% |
GGGAACGATTCAACTTATCA+CGG | - | chr3_3:49529378-49529397 | None:intergenic | 40.0% | |
!! | GCCTAGTATCCCATTTTAAC+TGG | - | chr3_3:49529606-49529625 | None:intergenic | 40.0% |
GTTAAAATGGGATACTAGGC+TGG | + | chr3_3:49529606-49529625 | Msa0456130:intron | 40.0% | |
ATTGCATGTGGACGATGATT+TGG | + | chr3_3:49529842-49529861 | Msa0456130:intron | 40.0% | |
TTGCATGTGGACGATGATTT+GGG | + | chr3_3:49529843-49529862 | Msa0456130:intron | 40.0% | |
!! | TTTAGGTTTGTTGCAAGGAG+GGG | + | chr3_3:49529953-49529972 | Msa0456130:intron | 40.0% |
GTTTGTTTGTGTGGAACGTT+TGG | + | chr3_3:49530006-49530025 | Msa0456130:intron | 40.0% | |
CTTCAAAAATCATGCCTCTC+TGG | - | chr3_3:49530182-49530201 | None:intergenic | 40.0% | |
!! | CTTCATAGCAAGAGTGTTAG+AGG | + | chr3_3:49530408-49530427 | Msa0456130:intron | 40.0% |
!! | ATAGCAAGAGTGTTAGAGGT+TGG | + | chr3_3:49530412-49530431 | Msa0456130:intron | 40.0% |
AGGCTATCATGAAGATGTGT+AGG | + | chr3_3:49530501-49530520 | Msa0456130:intron | 40.0% | |
GTATAAGACCATCTCCAATG+GGG | + | chr3_3:49531205-49531224 | Msa0456130:intron | 40.0% | |
TTCAATAACCCCATTGGAGA+TGG | - | chr3_3:49531216-49531235 | None:intergenic | 40.0% | |
TCTCCAATGGGGTTATTGAA+AGG | + | chr3_3:49531216-49531235 | Msa0456130:intron | 40.0% | |
CTCCAATGGGGTTATTGAAA+GGG | + | chr3_3:49531217-49531236 | Msa0456130:intron | 40.0% | |
TTCAACAAGCAAGCTTCCAA+TGG | - | chr3_3:49531260-49531279 | None:intergenic | 40.0% | |
GTTGAAGACATATGACATGG+AGG | + | chr3_3:49531274-49531293 | Msa0456130:intron | 40.0% | |
ACATATGACATGGAGGAGTT+GGG | + | chr3_3:49531281-49531300 | Msa0456130:intron | 40.0% | |
CGCTGTGATTGTGTGAAAAA+TGG | + | chr3_3:49531354-49531373 | Msa0456130:intron | 40.0% | |
AGAAAGTGGTTGGGAAGATT+AGG | + | chr3_3:49531432-49531451 | Msa0456130:intron | 40.0% | |
!!! | GATTTGGGTTTTGAGGATGT+TGG | - | chr3_3:49531792-49531811 | None:intergenic | 40.0% |
!!! | GATTTGGGTTTTGAGGATGT+TGG | - | chr3_3:49531792-49531811 | None:intergenic | 40.0% |
ATCTAATGAAGTCACTCCAG+AGG | + | chr3_3:49532071-49532090 | Msa0456130:intron | 40.0% | |
!!! | TGCTGGTTTTTCTTGCTCTT+AGG | - | chr3_3:49532105-49532124 | None:intergenic | 40.0% |
AGAAAAACCAGCAACCATCA+TGG | + | chr3_3:49532112-49532131 | Msa0456130:intron | 40.0% | |
ATTTGGCGTTAATTAGTGGG+TGG | + | chr3_3:49532148-49532167 | Msa0456130:intron | 40.0% | |
TATGGAACATCCAGTGTTGT+CGG | + | chr3_3:49532177-49532196 | Msa0456130:intron | 40.0% | |
ACCAGACAAGTGAAGCATAT+TGG | + | chr3_3:49532205-49532224 | Msa0456130:intron | 40.0% | |
CCAGACAAGTGAAGCATATT+GGG | + | chr3_3:49532206-49532225 | Msa0456130:intron | 40.0% | |
CAGACAAGTGAAGCATATTG+GGG | + | chr3_3:49532207-49532226 | Msa0456130:intron | 40.0% | |
GCCCAAGAAATATATGCATG+TGG | + | chr3_3:49532405-49532424 | Msa0456130:intron | 40.0% | |
!! | AATGTTGGCTTAGGAAGTAG+TGG | + | chr3_3:49532507-49532526 | Msa0456130:intron | 40.0% |
TGGATCTAAGAGATCTCATG+AGG | + | chr3_3:49532527-49532546 | Msa0456130:intron | 40.0% | |
AGGGAGGCAGCTAAAAAAAA+AGG | + | chr3_3:49532582-49532601 | Msa0456130:intron | 40.0% | |
CTAACTTTGTGCCCATTCTA+TGG | + | chr3_3:49533113-49533132 | Msa0456130:intron | 40.0% | |
AGTGAGGAAGACCATAGAAT+GGG | - | chr3_3:49533127-49533146 | None:intergenic | 40.0% | |
TAGTGAGGAAGACCATAGAA+TGG | - | chr3_3:49533128-49533147 | None:intergenic | 40.0% | |
!! | AGTGGTGGACAGTTAGTAAT+GGG | - | chr3_3:49533243-49533262 | None:intergenic | 40.0% |
! | CTGACAAATAGTGGAGATAG+TGG | - | chr3_3:49533403-49533422 | None:intergenic | 40.0% |
AAAGCAACGCTGACAAATAG+TGG | - | chr3_3:49533412-49533431 | None:intergenic | 40.0% | |
! | TGTCTTCAGCATCACGTTTT+GGG | - | chr3_3:49533685-49533704 | None:intergenic | 40.0% |
CGTCGAAAAAAACTAGAGGA+AGG | + | chr3_3:49533731-49533750 | Msa0456130:intron | 40.0% | |
AGTAGTCGTCAATGAGTCTT+TGG | - | chr3_3:49533820-49533839 | None:intergenic | 40.0% | |
ACGATGTAATGTTTCGTCGT+CGG | + | chr3_3:49533861-49533880 | Msa0456130:intron | 40.0% | |
!! | TAATGTTTCGTCGTCGGTTT+CGG | + | chr3_3:49533867-49533886 | Msa0456130:intron | 40.0% |
TGCTAACATTCGCATTGTTG+TGG | - | chr3_3:49534008-49534027 | None:intergenic | 40.0% | |
GTATTCCTTGTAGGTCATCT+TGG | - | chr3_3:49534159-49534178 | None:intergenic | 40.0% | |
CTACATGTTAGTGAAATGCG+GGG | + | chr3_3:49534178-49534197 | Msa0456130:intron | 40.0% | |
TACATGTTAGTGAAATGCGG+GGG | + | chr3_3:49534179-49534198 | Msa0456130:intron | 40.0% | |
!! | GAGTATTGACTGTATGCACT+GGG | + | chr3_3:49534219-49534238 | Msa0456130:intron | 40.0% |
AATTGTCCTAAAGCATGGGA+AGG | + | chr3_3:49534250-49534269 | Msa0456130:intron | 40.0% | |
AATTGACCTTCCCATGCTTT+AGG | - | chr3_3:49534259-49534278 | None:intergenic | 40.0% | |
ATGGGAAGGTCAATTTACCA+GGG | + | chr3_3:49534264-49534283 | Msa0456130:intron | 40.0% | |
TGTTCCACATCATCAAACAC+TGG | - | chr3_3:49534328-49534347 | None:intergenic | 40.0% | |
!! | AGTGTTTGATGATGTGGAAC+AGG | + | chr3_3:49534327-49534346 | Msa0456130:intron | 40.0% |
!! | GTGTTTGATGATGTGGAACA+GGG | + | chr3_3:49534328-49534347 | Msa0456130:intron | 40.0% |
AACTTATCGGGTTCACTTTG+AGG | - | chr3_3:49534458-49534477 | None:intergenic | 40.0% | |
CAAAACATCAAGAGGGATGT+CGG | + | chr3_3:49534483-49534502 | Msa0456130:intron | 40.0% | |
! | TTGTGGGACATAACCGATTT+GGG | + | chr3_3:49534572-49534591 | Msa0456130:intron | 40.0% |
CCTCATGTTGATACCCAAAT+CGG | - | chr3_3:49534588-49534607 | None:intergenic | 40.0% | |
GAGATACATATGCTCAACGT+TGG | + | chr3_3:49534648-49534667 | Msa0456130:intron | 40.0% | |
!! | ACCGATTTTGAGCAATCTGA+GGG | + | chr3_3:49534671-49534690 | Msa0456130:intron | 40.0% |
TCCCTCAGATTGCTCAAAAT+CGG | - | chr3_3:49534675-49534694 | None:intergenic | 40.0% | |
! | CGCACATGATTTGCAAAAGT+GGG | - | chr3_3:49534740-49534759 | None:intergenic | 40.0% |
! | ACGCACATGATTTGCAAAAG+TGG | - | chr3_3:49534741-49534760 | None:intergenic | 40.0% |
AACATTTGGATCACGCAACT+CGG | - | chr3_3:49534771-49534790 | None:intergenic | 40.0% | |
TGCAATGCGTGATGAACATT+TGG | - | chr3_3:49534785-49534804 | None:intergenic | 40.0% | |
TTTGTCCATATGTGCTTCAC+TGG | - | chr3_3:49534815-49534834 | None:intergenic | 40.0% | |
! | GAAATAAAAAGTGGTGGGGT+AGG | + | chr3_3:49535100-49535119 | Msa0456130:intron | 40.0% |
TTGAATGAAAACCCTTGGAG+AGG | + | chr3_3:49535126-49535145 | Msa0456130:intron | 40.0% | |
GAGAAAATGATGTGGAGTGT+TGG | + | chr3_3:49535179-49535198 | Msa0456130:intron | 40.0% | |
GACTGATATTGTGAGATGGA+AGG | + | chr3_3:49535544-49535563 | Msa0456130:intron | 40.0% | |
!!! | GACACTCATTTTGAAACGGA+GGG | - | chr3_3:49535875-49535894 | None:intergenic | 40.0% |
AGCCAATTGCACACAGATTA+AGG | + | chr3_3:49535646-49535665 | Msa0456130:intron | 40.0% | |
!!! | GACACTCATTTTGAAACGGA+GGG | + | chr3_3:49535875-49535894 | Msa0456130:intron | 40.0% |
! | CGTGTTCCAAGAAAAGCTTT+TGG | + | chr3_3:49535935-49535954 | Msa0456130:intron | 40.0% |
! | GTAGAGTCGCACGATTTTAT+TGG | + | chr3_3:49536624-49536643 | Msa0456130:intron | 40.0% |
TGTTGCATGTGTGATATGTG+TGG | - | chr3_3:49536894-49536913 | None:intergenic | 40.0% | |
TCAGGAGTCTTTATCAACAC+TGG | - | chr3_3:49537174-49537193 | None:intergenic | 40.0% | |
! | GTGTTGATAAAGACTCCTGA+TGG | + | chr3_3:49537174-49537193 | Msa0456130:CDS | 40.0% |
ACTTTCCATTTAGTGCCATC+AGG | - | chr3_3:49527995-49528014 | None:intergenic | 40.0% | |
! | TGGAGAGATCTGGTTTGAAA+AGG | + | chr3_3:49537230-49537249 | Msa0456130:CDS | 40.0% |
! | GGAGAGATCTGGTTTGAAAA+GGG | + | chr3_3:49537231-49537250 | Msa0456130:CDS | 40.0% |
! | AGATCTGGTTTGAAAAGGGT+TGG | + | chr3_3:49537235-49537254 | Msa0456130:CDS | 40.0% |
CATATTTGACCTGAATGCTG+TGG | + | chr3_3:49537341-49537360 | Msa0456130:CDS | 40.0% | |
! | AAGCTATTTCCACAGCATTC+AGG | - | chr3_3:49537353-49537372 | None:intergenic | 40.0% |
TGAATGGCTTAATCGGAAGA+AGG | + | chr3_3:49528252-49528271 | Msa0456130:CDS | 40.0% | |
CGGACTTTCTTATGTGTTTG+AGG | - | chr3_3:49537501-49537520 | None:intergenic | 40.0% | |
CAAACACATAAGAAAGTCCG+AGG | + | chr3_3:49537501-49537520 | Msa0456130:CDS | 40.0% | |
ACATAAGAAAGTCCGAGGTT+TGG | + | chr3_3:49537506-49537525 | Msa0456130:intron | 40.0% | |
CAAGAAACCAAACCAAACCT+CGG | - | chr3_3:49528324-49528343 | None:intergenic | 40.0% | |
AAGAATGTGATGCTGCTGAT+TGG | + | chr3_3:49537936-49537955 | Msa0456130:CDS | 40.0% | |
! | AGAATGTGATGCTGCTGATT+GGG | + | chr3_3:49537937-49537956 | Msa0456130:CDS | 40.0% |
TCACTGTTTGCAAGTGAAAG+TGG | + | chr3_3:49538032-49538051 | Msa0456130:CDS | 40.0% | |
!! | AGTGAAAGTGGACTGAAATC+AGG | + | chr3_3:49538044-49538063 | Msa0456130:CDS | 40.0% |
TGTCGTCGAGGAGAAACAAA+AGG | - | chr3_3:49528292-49528311 | None:intergenic | 45.0% | |
CGAACTTTCTTATGTCGTCG+AGG | - | chr3_3:49528304-49528323 | None:intergenic | 45.0% | |
CGACGACATAAGAAAGTTCG+AGG | + | chr3_3:49528304-49528323 | Msa0456130:CDS | 45.0% | |
TGGTACTGCAGATTGGGAAA+AGG | + | chr3_3:49528766-49528785 | Msa0456130:CDS | 45.0% | |
TGCAGATTGGGAAAAGGTCA+TGG | + | chr3_3:49528772-49528791 | Msa0456130:CDS | 45.0% | |
TAAAAACAAGAGCCAACCCG+CGG | - | chr3_3:49528847-49528866 | None:intergenic | 45.0% | |
!! | AGTGGAAGTGGACTGAAATC+AGG | + | chr3_3:49528867-49528886 | Msa0456130:CDS | 45.0% |
!! | TTGTTGCATTTTAGGGGGGT+TGG | + | chr3_3:49529733-49529752 | Msa0456130:intron | 45.0% |
CACACGACTAGGGAATAATC+TGG | + | chr3_3:49529871-49529890 | Msa0456130:intron | 45.0% | |
ACACACGGGACCAGAATAAA+GGG | + | chr3_3:49529910-49529929 | Msa0456130:intron | 45.0% | |
AGCGTGATCTCCCTTTATTC+TGG | - | chr3_3:49529923-49529942 | None:intergenic | 45.0% | |
!! | TTAGGTTTGTTGCAAGGAGG+GGG | + | chr3_3:49529954-49529973 | Msa0456130:intron | 45.0% |
! | CTTAGGACAAAGTGATGACG+TGG | + | chr3_3:49530254-49530273 | Msa0456130:intron | 45.0% |
CACCCTTTCAATAACCCCAT+TGG | - | chr3_3:49531222-49531241 | None:intergenic | 45.0% | |
GACATATGACATGGAGGAGT+TGG | + | chr3_3:49531280-49531299 | Msa0456130:intron | 45.0% | |
!!! | GGGTTTTGAGGATGTTGGTT+GGG | - | chr3_3:49531787-49531806 | None:intergenic | 45.0% |
!!! | TGGGTTTTGAGGATGTTGGT+TGG | - | chr3_3:49531788-49531807 | None:intergenic | 45.0% |
!!! | GGGTTTTGAGGATGTTGGTT+TGG | - | chr3_3:49531787-49531806 | None:intergenic | 45.0% |
CTCTTAGGAGTTGTATCCTC+TGG | - | chr3_3:49532090-49532109 | None:intergenic | 45.0% | |
ATGGAACATCCAGTGTTGTC+GGG | + | chr3_3:49532178-49532197 | Msa0456130:intron | 45.0% | |
CCCAATATGCTTCACTTGTC+TGG | - | chr3_3:49532209-49532228 | None:intergenic | 45.0% | |
GTGGAGAATCGAATGAGCAA+TGG | - | chr3_3:49532257-49532276 | None:intergenic | 45.0% | |
TTGGTCGGAAGATGATGTGT+TGG | + | chr3_3:49532377-49532396 | Msa0456130:intron | 45.0% | |
! | TGCCATAACGAGGTTGATCA+CGG | - | chr3_3:49532473-49532492 | None:intergenic | 45.0% |
AGTCAAGTGGGAGGAAATGT+TGG | + | chr3_3:49532492-49532511 | Msa0456130:intron | 45.0% | |
AGATCTCATGAGGACTCTGT+AGG | + | chr3_3:49532537-49532556 | Msa0456130:intron | 45.0% | |
AAAAAGAAAGGCAAGGACGC+TGG | + | chr3_3:49532606-49532625 | Msa0456130:intron | 45.0% | |
!! | AACTTGGTGCGTGAACTGTT+TGG | + | chr3_3:49532828-49532847 | Msa0456130:intron | 45.0% |
AACACTAGGGACTATCACTG+AGG | - | chr3_3:49532954-49532973 | None:intergenic | 45.0% | |
TAGGGGACTAGACAACACTA+GGG | - | chr3_3:49532967-49532986 | None:intergenic | 45.0% | |
AACACTAGGGACTATCACTG+AGG | - | chr3_3:49532954-49532973 | None:intergenic | 45.0% | |
!! | TTAGTAATGGGCACACAGTG+AGG | - | chr3_3:49533231-49533250 | None:intergenic | 45.0% |
!! | CAGTGGTGGACAGTTAGTAA+TGG | - | chr3_3:49533244-49533263 | None:intergenic | 45.0% |
AATGGGCAAATAGTGTGTGG+TGG | - | chr3_3:49533268-49533287 | None:intergenic | 45.0% | |
!!! | AGCATCACGTTTTGGGAAGT+AGG | - | chr3_3:49533678-49533697 | None:intergenic | 45.0% |
! | GTGTCTTCAGCATCACGTTT+TGG | - | chr3_3:49533686-49533705 | None:intergenic | 45.0% |
AAAGGTCTCCAACGATTCGA+AGG | - | chr3_3:49533910-49533929 | None:intergenic | 45.0% | |
GTTGATGCCACCAACAAAGA+AGG | + | chr3_3:49533959-49533978 | Msa0456130:intron | 45.0% | |
!! | GGAGTATTGACTGTATGCAC+TGG | + | chr3_3:49534218-49534237 | Msa0456130:intron | 45.0% |
CATGGGAAGGTCAATTTACC+AGG | + | chr3_3:49534263-49534282 | Msa0456130:intron | 45.0% | |
TGGGAAGGTCAATTTACCAG+GGG | + | chr3_3:49534265-49534284 | Msa0456130:intron | 45.0% | |
TCAATTTACCAGGGGGGATA+AGG | + | chr3_3:49534273-49534292 | Msa0456130:intron | 45.0% | |
CAATTTACCAGGGGGGATAA+GGG | + | chr3_3:49534274-49534293 | Msa0456130:intron | 45.0% | |
CCACCACAGTTATTCTTGAC+CGG | + | chr3_3:49534299-49534318 | Msa0456130:intron | 45.0% | |
TGACCGGTCAAGAATAACTG+TGG | - | chr3_3:49534305-49534324 | None:intergenic | 45.0% | |
CATCATCAAACACTGGTGAC+CGG | - | chr3_3:49534321-49534340 | None:intergenic | 45.0% | |
!! | GTCACCAGTGTTTGATGATG+TGG | + | chr3_3:49534321-49534340 | Msa0456130:intron | 45.0% |
! | AAGGACATCGAACGTGCTTT+TGG | + | chr3_3:49534506-49534525 | Msa0456130:intron | 45.0% |
CTTGTGGGACATAACCGATT+TGG | + | chr3_3:49534571-49534590 | Msa0456130:intron | 45.0% | |
!! | CCGATTTGGGTATCAACATG+AGG | + | chr3_3:49534585-49534604 | Msa0456130:intron | 45.0% |
!! | GACCGATTTTGAGCAATCTG+AGG | + | chr3_3:49534670-49534689 | Msa0456130:intron | 45.0% |
TTTGAGCAATCTGAGGGAAG+TGG | + | chr3_3:49534677-49534696 | Msa0456130:intron | 45.0% | |
TGCAAAAGTGGGTAACACCT+CGG | - | chr3_3:49534729-49534748 | None:intergenic | 45.0% | |
CAGATCCAGTGAAGCACATA+TGG | + | chr3_3:49534807-49534826 | Msa0456130:intron | 45.0% | |
!! | GGGTGTTGAATGAAAACCCT+TGG | + | chr3_3:49535121-49535140 | Msa0456130:intron | 45.0% |
!!! | CGACACTCATTTTGAAACGG+AGG | - | chr3_3:49535874-49535893 | None:intergenic | 45.0% |
!!! | CGACACTCATTTTGAAACGG+AGG | + | chr3_3:49535874-49535893 | Msa0456130:intron | 45.0% |
! | GGTCGACCAAAAGCTTTTCT+TGG | - | chr3_3:49535944-49535963 | None:intergenic | 45.0% |
ACTCTTTCATCCATGGCTAG+AGG | + | chr3_3:49536759-49536778 | Msa0456130:intron | 45.0% | |
GATAGAACTTCCTCTAGCCA+TGG | - | chr3_3:49536772-49536791 | None:intergenic | 45.0% | |
AGACTCCTGATGGCACTAAA+TGG | + | chr3_3:49537184-49537203 | Msa0456130:CDS | 45.0% | |
TGTGTTTGAGGAGAAACGGA+AGG | - | chr3_3:49537489-49537508 | None:intergenic | 45.0% | |
! | AGAAAGTCCGAGGTTTGGTT+TGG | + | chr3_3:49537511-49537530 | Msa0456130:intron | 45.0% |
CTGGTAGAACATACTCTGGT+AGG | + | chr3_3:49537788-49537807 | Msa0456130:intron | 45.0% | |
! | TGATGCTGCTGATTGGGAAA+AGG | + | chr3_3:49537943-49537962 | Msa0456130:CDS | 45.0% |
CGTTCTTATGAGGGCAGAAA+TGG | + | chr3_3:49537987-49538006 | Msa0456130:CDS | 45.0% | |
!!! | TATTTTTTATATTATTTTGA+AGG | - | chr3_3:49535581-49535600 | None:intergenic | 5.0% |
!!! | ATTTTACTTATATTTAAAAA+CGG | - | chr3_3:49536392-49536411 | None:intergenic | 5.0% |
GGCTTAATCGGAAGAAGGCT+AGG | + | chr3_3:49528257-49528276 | Msa0456130:CDS | 50.0% | |
ATCGGAAGAAGGCTAGGCAA+AGG | + | chr3_3:49528263-49528282 | Msa0456130:CDS | 50.0% | |
!!! | ATATGACCGTCGCTTTTCCG+CGG | + | chr3_3:49528827-49528846 | Msa0456130:CDS | 50.0% |
CTGAACACGGTGATTGCATG+TGG | + | chr3_3:49529830-49529849 | Msa0456130:intron | 50.0% | |
GACACACGGGACCAGAATAA+AGG | + | chr3_3:49529909-49529928 | Msa0456130:intron | 50.0% | |
GTCTTGAAGCGAGTGAAGAG+CGG | + | chr3_3:49530102-49530121 | Msa0456130:intron | 50.0% | |
TCTTGAAGCGAGTGAAGAGC+GGG | + | chr3_3:49530103-49530122 | Msa0456130:intron | 50.0% | |
TTAAGCTTGCCATGGCGAGT+TGG | - | chr3_3:49530136-49530155 | None:intergenic | 50.0% | |
! | CACTCGCTTTAAGCTTGCCA+TGG | - | chr3_3:49530144-49530163 | None:intergenic | 50.0% |
AGAGCGAGAAAACTCCAGAG+AGG | + | chr3_3:49530165-49530184 | Msa0456130:intron | 50.0% | |
ATCCTCGCCACAGCGAATTA+AGG | + | chr3_3:49530228-49530247 | Msa0456130:intron | 50.0% | |
TAAGCCGCCTTAATTCGCTG+TGG | - | chr3_3:49530238-49530257 | None:intergenic | 50.0% | |
ACAGCGAATTAAGGCGGCTT+AGG | + | chr3_3:49530237-49530256 | Msa0456130:intron | 50.0% | |
GTGGTTGGGAAGATTAGGAC+AGG | + | chr3_3:49531437-49531456 | Msa0456130:intron | 50.0% | |
GTTGGGAAGATTAGGACAGG+TGG | + | chr3_3:49531440-49531459 | Msa0456130:intron | 50.0% | |
CAGTGTTCCATGATGGTTGC+TGG | - | chr3_3:49532122-49532141 | None:intergenic | 50.0% | |
CAGCATGCAATGACATCACG+TGG | - | chr3_3:49532276-49532295 | None:intergenic | 50.0% | |
! | GCTTGCTTGCTGATGCTTAG+CGG | - | chr3_3:49532355-49532374 | None:intergenic | 50.0% |
GCTAAGCATCAGCAAGCAAG+CGG | + | chr3_3:49532354-49532373 | Msa0456130:intron | 50.0% | |
CTCCGTGATCAACCTCGTTA+TGG | + | chr3_3:49532468-49532487 | Msa0456130:intron | 50.0% | |
ACCTCGTTATGGCAGTCAAG+TGG | + | chr3_3:49532479-49532498 | Msa0456130:intron | 50.0% | |
CCTCGTTATGGCAGTCAAGT+GGG | + | chr3_3:49532480-49532499 | Msa0456130:intron | 50.0% | |
!! | GTGGGAGGAAATGTTGGCTT+AGG | + | chr3_3:49532498-49532517 | Msa0456130:intron | 50.0% |
AGGATCTAGTGCTCGTCCAA+TGG | + | chr3_3:49532557-49532576 | Msa0456130:intron | 50.0% | |
GGATCTAGTGCTCGTCCAAT+GGG | + | chr3_3:49532558-49532577 | Msa0456130:intron | 50.0% | |
TAGTGCTCGTCCAATGGGTA+GGG | + | chr3_3:49532563-49532582 | Msa0456130:intron | 50.0% | |
CCTGTCATCGAGATGCTCTT+CGG | - | chr3_3:49532790-49532809 | None:intergenic | 50.0% | |
CTAGGGGACTAGACAACACT+AGG | - | chr3_3:49532968-49532987 | None:intergenic | 50.0% | |
CGGGGAACTAGACAACACTA+GGG | - | chr3_3:49533038-49533057 | None:intergenic | 50.0% | |
ACGGGGAACTAGACAACACT+AGG | - | chr3_3:49533039-49533058 | None:intergenic | 50.0% | |
!! | CTAGAGGAAGGTAGTGGATC+AGG | + | chr3_3:49533743-49533762 | Msa0456130:intron | 50.0% |
!! | GAAGGTAGTGGATCAGGTAG+TGG | + | chr3_3:49533749-49533768 | Msa0456130:intron | 50.0% |
CACGCTTTCCTTCGAATCGT+TGG | + | chr3_3:49533899-49533918 | Msa0456130:intron | 50.0% | |
!! | GTTGGTGGCATCAACTTGCT+GGG | - | chr3_3:49533954-49533973 | None:intergenic | 50.0% |
!! | TGTTGGTGGCATCAACTTGC+TGG | - | chr3_3:49533955-49533974 | None:intergenic | 50.0% |
CCTTGTAGGTCATCTTGGGT+TGG | - | chr3_3:49534154-49534173 | None:intergenic | 50.0% | |
CCAACCCAAGATGACCTACA+AGG | + | chr3_3:49534151-49534170 | Msa0456130:intron | 50.0% | |
CAATACTCCCGATCATCCCT+GGG | - | chr3_3:49534207-49534226 | None:intergenic | 50.0% | |
TCAATACTCCCGATCATCCC+TGG | - | chr3_3:49534208-49534227 | None:intergenic | 50.0% | |
TTGACTGTATGCACTGGGAG+TGG | + | chr3_3:49534224-49534243 | Msa0456130:intron | 50.0% | |
GGGAAGGTCAATTTACCAGG+GGG | + | chr3_3:49534266-49534285 | Msa0456130:intron | 50.0% | |
GGAAGGTCAATTTACCAGGG+GGG | + | chr3_3:49534267-49534286 | Msa0456130:intron | 50.0% | |
CCGGTCAAGAATAACTGTGG+TGG | - | chr3_3:49534302-49534321 | None:intergenic | 50.0% | |
TGGAACAGGGAAAGACTCCA+AGG | + | chr3_3:49534341-49534360 | Msa0456130:intron | 50.0% | |
GGAACAGGGAAAGACTCCAA+GGG | + | chr3_3:49534342-49534361 | Msa0456130:intron | 50.0% | |
ACATCAAGAGGGATGTCGGA+AGG | + | chr3_3:49534487-49534506 | Msa0456130:intron | 50.0% | |
! | TCCTGAGCTCTAGCATCCTT+TGG | - | chr3_3:49537707-49537726 | None:intergenic | 50.0% |
! | TGCTGATTGGGAAAAGGTCG+TGG | + | chr3_3:49537949-49537968 | Msa0456130:CDS | 50.0% |
TGCAAACAGTGACCAACCTG+CGG | - | chr3_3:49538024-49538043 | None:intergenic | 50.0% | |
CTCTCTTGGACATGGCTGCT+TGG | + | chr3_3:49528081-49528100 | Msa0456130:CDS | 55.0% | |
TCTTGGACATGGCTGCTTGG+TGG | + | chr3_3:49528084-49528103 | Msa0456130:CDS | 55.0% | |
! | TCCTGAGCTCTAGCATCCTG+TGG | - | chr3_3:49528523-49528542 | None:intergenic | 55.0% |
!!! | TATGACCGTCGCTTTTCCGC+GGG | + | chr3_3:49528828-49528847 | Msa0456130:CDS | 55.0% |
TTTGGGTCGCTCACACGACT+AGG | + | chr3_3:49529860-49529879 | Msa0456130:intron | 55.0% | |
TTGGGTCGCTCACACGACTA+GGG | + | chr3_3:49529861-49529880 | Msa0456130:intron | 55.0% | |
GGCGAGGATGTTGCTCATTG+TGG | - | chr3_3:49530217-49530236 | None:intergenic | 55.0% | |
CTCGCCACAGCGAATTAAGG+CGG | + | chr3_3:49530231-49530250 | Msa0456130:intron | 55.0% | |
ATGACGTGGCAGAAACCCAC+TGG | + | chr3_3:49530268-49530287 | Msa0456130:intron | 55.0% | |
GCTGAGTTTCCTTCGCCAGT+GGG | - | chr3_3:49530286-49530305 | None:intergenic | 55.0% | |
AGCTGAGTTTCCTTCGCCAG+TGG | - | chr3_3:49530287-49530306 | None:intergenic | 55.0% | |
ACGCGGAGAGAGAAAGTGGT+TGG | + | chr3_3:49531422-49531441 | Msa0456130:intron | 55.0% | |
CGCGGAGAGAGAAAGTGGTT+GGG | + | chr3_3:49531423-49531442 | Msa0456130:intron | 55.0% | |
! | GACAGGTGGCGCGTTTTTAC+TGG | + | chr3_3:49531454-49531473 | Msa0456130:intron | 55.0% |
CTGGTTTCTCCCGACAACAC+TGG | - | chr3_3:49532190-49532209 | None:intergenic | 55.0% | |
AGCATCAGCAAGCAAGCGGT+TGG | + | chr3_3:49532358-49532377 | Msa0456130:intron | 55.0% | |
TCAGCAAGCAAGCGGTTGGT+CGG | + | chr3_3:49532362-49532381 | Msa0456130:intron | 55.0% | |
CCCACTTGACTGCCATAACG+AGG | - | chr3_3:49532483-49532502 | None:intergenic | 55.0% | |
CGTTATGGCAGTCAAGTGGG+AGG | + | chr3_3:49532483-49532502 | Msa0456130:intron | 55.0% | |
CTAGTGCTCGTCCAATGGGT+AGG | + | chr3_3:49532562-49532581 | Msa0456130:intron | 55.0% | |
TTAGCTGCCTCCCTACCCAT+TGG | - | chr3_3:49532576-49532595 | None:intergenic | 55.0% | |
! | TGGCTTGGAGGAGGTGGAAA+AGG | + | chr3_3:49532626-49532645 | Msa0456130:intron | 55.0% |
TGGAGGAGGTGGAAAAGGAG+TGG | + | chr3_3:49532631-49532650 | Msa0456130:intron | 55.0% | |
GGAGGAGGTGGAAAAGGAGT+GGG | + | chr3_3:49532632-49532651 | Msa0456130:intron | 55.0% | |
!! | CCGAAGAGCATCTCGATGAC+AGG | + | chr3_3:49532787-49532806 | Msa0456130:intron | 55.0% |
GTTATGTCCCACAAGCGAGC+TGG | - | chr3_3:49534566-49534585 | None:intergenic | 55.0% | |
ACCTCGGTCGAGTATGGTTG+CGG | - | chr3_3:49534713-49534732 | None:intergenic | 55.0% | |
GGTAACACCTCGGTCGAGTA+TGG | - | chr3_3:49534719-49534738 | None:intergenic | 55.0% | |
CTCTCTTGGACATGGCTGCT+TGG | + | chr3_3:49528081-49528100 | Msa0456130:CDS | 55.0% | |
TCTTGGACATGGCTGCTTGG+TGG | + | chr3_3:49528084-49528103 | Msa0456130:CDS | 55.0% | |
GCCAAAGGATGCTAGAGCTC+AGG | + | chr3_3:49537703-49537722 | Msa0456130:CDS | 55.0% | |
ACAGTGACCAACCTGCGGAA+AGG | - | chr3_3:49538019-49538038 | None:intergenic | 55.0% | |
GCCACAGGATGCTAGAGCTC+AGG | + | chr3_3:49528519-49528538 | Msa0456130:CDS | 60.0% | |
GTTGCAAGGAGGGGGAGTTG+CGG | + | chr3_3:49529962-49529981 | Msa0456130:intron | 60.0% | |
GGTGAAGAGCCAACTCGCCA+TGG | + | chr3_3:49530124-49530143 | Msa0456130:intron | 60.0% | |
CGCCTTAATTCGCTGTGGCG+AGG | - | chr3_3:49530233-49530252 | None:intergenic | 60.0% | |
TGGCAGAAACCCACTGGCGA+AGG | + | chr3_3:49530274-49530293 | Msa0456130:intron | 60.0% | |
TCCTGCACAGCTGAGACACG+CGG | + | chr3_3:49531329-49531348 | Msa0456130:intron | 60.0% | |
TGACCTGTGACGTGCCCTGT+CGG | - | chr3_3:49531397-49531416 | None:intergenic | 60.0% | |
ACAGGGCACGTCACAGGTCA+GGG | + | chr3_3:49531397-49531416 | Msa0456130:intron | 60.0% | |
GGGAACGCGGAGAGAGAAAG+TGG | + | chr3_3:49531418-49531437 | Msa0456130:intron | 60.0% | |
! | GGTGGCGCGTTTTTACTGGC+TGG | + | chr3_3:49531458-49531477 | Msa0456130:intron | 60.0% |
!! | GCGCGTTTTTACTGGCTGGC+AGG | + | chr3_3:49531462-49531481 | Msa0456130:intron | 60.0% |
TGCTCGTCCAATGGGTAGGG+AGG | + | chr3_3:49532566-49532585 | Msa0456130:intron | 60.0% | |
! | GAAAGGCAAGGACGCTGGCT+TGG | + | chr3_3:49532611-49532630 | Msa0456130:intron | 60.0% |
AGTGAAATGCGGGGGTTCCC+AGG | + | chr3_3:49534187-49534206 | Msa0456130:intron | 60.0% | |
GTGAAATGCGGGGGTTCCCA+GGG | + | chr3_3:49534188-49534207 | Msa0456130:intron | 60.0% | |
TCCGTGAACCAGCTCGCTTG+TGG | + | chr3_3:49534555-49534574 | Msa0456130:intron | 60.0% | |
! | CCCACAAGCGAGCTGGTTCA+CGG | - | chr3_3:49534559-49534578 | None:intergenic | 60.0% |
CCGTGAACCAGCTCGCTTGT+GGG | + | chr3_3:49534556-49534575 | Msa0456130:intron | 60.0% | |
ACCGCAACCATACTCGACCG+AGG | + | chr3_3:49534709-49534728 | Msa0456130:intron | 60.0% | |
AATGGTCGTCGCCTTTCCGC+AGG | + | chr3_3:49538005-49538024 | Msa0456130:CDS | 60.0% | |
!!! | ACCGTCGCTTTTCCGCGGGT+TGG | + | chr3_3:49528832-49528851 | Msa0456130:CDS | 65.0% |
GCCAACCCGCGGAAAAGCGA+CGG | - | chr3_3:49528836-49528855 | None:intergenic | 65.0% | |
! | GTGCGTTACACGCGCCGACA+GGG | + | chr3_3:49531380-49531399 | Msa0456130:intron | 65.0% |
GACAGGGCACGTCACAGGTC+AGG | + | chr3_3:49531396-49531415 | Msa0456130:intron | 65.0% | |
CAGGGCACGTCACAGGTCAG+GGG | + | chr3_3:49531398-49531417 | Msa0456130:intron | 65.0% | |
CGTCACAGGTCAGGGGAACG+CGG | + | chr3_3:49531405-49531424 | Msa0456130:intron | 65.0% | |
!! | AGGCAAGGACGCTGGCTTGG+AGG | + | chr3_3:49532614-49532633 | Msa0456130:intron | 65.0% |
!! | CAAGGACGCTGGCTTGGAGG+AGG | + | chr3_3:49532617-49532636 | Msa0456130:intron | 65.0% |
CGGGGGTTCCCAGGGATGAT+CGG | + | chr3_3:49534196-49534215 | Msa0456130:intron | 65.0% | |
GGGGGTTCCCAGGGATGATC+GGG | + | chr3_3:49534197-49534216 | Msa0456130:intron | 65.0% | |
GGTGGTTCCCTTATCCCCCC+TGG | - | chr3_3:49534284-49534303 | None:intergenic | 65.0% | |
GTCGTCGCCTTTCCGCAGGT+TGG | + | chr3_3:49538009-49538028 | Msa0456130:CDS | 65.0% | |
GCCGCGTGTCTCAGCTGTGC+AGG | - | chr3_3:49531333-49531352 | None:intergenic | 70.0% | |
! | CGTGCGTTACACGCGCCGAC+AGG | + | chr3_3:49531379-49531398 | Msa0456130:intron | 70.0% |
!! | GGACGCTGGCTTGGAGGAGG+TGG | + | chr3_3:49532620-49532639 | Msa0456130:intron | 70.0% |
! | GCGCCGACAGGGCACGTCAC+AGG | + | chr3_3:49531391-49531410 | Msa0456130:intron | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_3 | gene | 49527965 | 49538103 | 49527965 | ID=Msa0456130;Name=Msa0456130 |
chr3_3 | mRNA | 49527965 | 49538103 | 49527965 | ID=Msa0456130-mRNA-1;Parent=Msa0456130;Name=Msa0456130-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.28|0.12|1|0.57|0.25|8|0|484 |
chr3_3 | exon | 49527965 | 49528138 | 49527965 | ID=Msa0456130-mRNA-1:exon:9375;Parent=Msa0456130-mRNA-1 |
chr3_3 | exon | 49528157 | 49528325 | 49528157 | ID=Msa0456130-mRNA-1:exon:9376;Parent=Msa0456130-mRNA-1 |
chr3_3 | exon | 49528476 | 49528621 | 49528476 | ID=Msa0456130-mRNA-1:exon:9377;Parent=Msa0456130-mRNA-1 |
chr3_3 | exon | 49528720 | 49528944 | 49528720 | ID=Msa0456130-mRNA-1:exon:9378;Parent=Msa0456130-mRNA-1 |
chr3_3 | exon | 49537123 | 49537304 | 49537123 | ID=Msa0456130-mRNA-1:exon:9379;Parent=Msa0456130-mRNA-1 |
chr3_3 | exon | 49537320 | 49537522 | 49537320 | ID=Msa0456130-mRNA-1:exon:9380;Parent=Msa0456130-mRNA-1 |
chr3_3 | exon | 49537660 | 49537805 | 49537660 | ID=Msa0456130-mRNA-1:exon:9381;Parent=Msa0456130-mRNA-1 |
chr3_3 | exon | 49537897 | 49538103 | 49537897 | ID=Msa0456130-mRNA-1:exon:9382;Parent=Msa0456130-mRNA-1 |
chr3_3 | CDS | 49527965 | 49528138 | 49527965 | ID=Msa0456130-mRNA-1:cds;Parent=Msa0456130-mRNA-1 |
chr3_3 | CDS | 49528157 | 49528325 | 49528157 | ID=Msa0456130-mRNA-1:cds;Parent=Msa0456130-mRNA-1 |
chr3_3 | CDS | 49528476 | 49528621 | 49528476 | ID=Msa0456130-mRNA-1:cds;Parent=Msa0456130-mRNA-1 |
chr3_3 | CDS | 49528720 | 49528944 | 49528720 | ID=Msa0456130-mRNA-1:cds;Parent=Msa0456130-mRNA-1 |
chr3_3 | CDS | 49537123 | 49537304 | 49537123 | ID=Msa0456130-mRNA-1:cds;Parent=Msa0456130-mRNA-1 |
chr3_3 | CDS | 49537320 | 49537522 | 49537320 | ID=Msa0456130-mRNA-1:cds;Parent=Msa0456130-mRNA-1 |
chr3_3 | CDS | 49537660 | 49537805 | 49537660 | ID=Msa0456130-mRNA-1:cds;Parent=Msa0456130-mRNA-1 |
chr3_3 | CDS | 49537897 | 49538103 | 49537897 | ID=Msa0456130-mRNA-1:cds;Parent=Msa0456130-mRNA-1 |
Gene Sequence |
Protein sequence |