Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456140 | XP_003600451.1 | 84.694 | 196 | 24 | 1 | 1 | 190 | 1 | 196 | 1.14e-115 | 339 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456140 | sp|Q8L3W1|VRN1_ARATH | 33.913 | 115 | 67 | 3 | 8 | 113 | 1 | 115 | 6.14e-15 | 75.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456140 | G8A2Z6 | 84.694 | 196 | 24 | 1 | 1 | 190 | 1 | 196 | 5.46e-116 | 339 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0456140 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456140 | MtrunA17_Chr3g0103191 | 84.694 | 196 | 24 | 1 | 1 | 190 | 1 | 196 | 1.05e-119 | 339 |
| Msa0456140 | MtrunA17_Chr3g0103181 | 75.127 | 197 | 37 | 5 | 1 | 190 | 1 | 192 | 1.75e-98 | 286 |
| Msa0456140 | MtrunA17_Chr3g0103151 | 75.309 | 162 | 32 | 3 | 1 | 155 | 1 | 161 | 2.93e-83 | 243 |
| Msa0456140 | MtrunA17_Chr3g0103171 | 70.520 | 173 | 43 | 3 | 25 | 190 | 5 | 176 | 9.42e-80 | 238 |
| Msa0456140 | MtrunA17_Chr3g0103201 | 80.451 | 133 | 19 | 2 | 65 | 190 | 1 | 133 | 7.30e-72 | 216 |
| Msa0456140 | MtrunA17_Chr1g0163071 | 42.763 | 152 | 78 | 4 | 26 | 168 | 2 | 153 | 8.62e-32 | 116 |
| Msa0456140 | MtrunA17_Chr8g0390841 | 33.778 | 225 | 105 | 6 | 4 | 191 | 31 | 248 | 9.87e-29 | 111 |
| Msa0456140 | MtrunA17_Chr7g0233561 | 46.602 | 103 | 47 | 2 | 9 | 103 | 15 | 117 | 1.02e-25 | 101 |
| Msa0456140 | MtrunA17_Chr1g0208771 | 32.512 | 203 | 94 | 5 | 25 | 191 | 12 | 207 | 4.26e-25 | 100 |
| Msa0456140 | MtrunA17_Chr7g0233571 | 35.811 | 148 | 87 | 2 | 9 | 148 | 7 | 154 | 7.11e-23 | 91.3 |
| Msa0456140 | MtrunA17_Chr3g0131891 | 31.122 | 196 | 120 | 4 | 9 | 191 | 16 | 209 | 2.52e-22 | 92.0 |
| Msa0456140 | MtrunA17_Chr5g0419201 | 32.000 | 150 | 92 | 3 | 12 | 151 | 16 | 165 | 3.73e-22 | 89.0 |
| Msa0456140 | MtrunA17_Chr7g0233521 | 32.022 | 178 | 100 | 4 | 25 | 190 | 1 | 169 | 1.28e-21 | 89.4 |
| Msa0456140 | MtrunA17_Chr1g0163251 | 32.124 | 193 | 108 | 6 | 12 | 191 | 9 | 191 | 1.56e-20 | 87.8 |
| Msa0456140 | MtrunA17_Chr4g0067431 | 35.099 | 151 | 84 | 5 | 10 | 151 | 13 | 158 | 1.61e-18 | 81.6 |
| Msa0456140 | MtrunA17_Chr1g0163181 | 28.293 | 205 | 109 | 8 | 14 | 191 | 11 | 204 | 2.06e-17 | 79.3 |
| Msa0456140 | MtrunA17_Chr7g0233541 | 44.578 | 83 | 40 | 1 | 26 | 102 | 2 | 84 | 2.43e-17 | 78.2 |
| Msa0456140 | MtrunA17_Chr1g0163191 | 34.906 | 106 | 59 | 3 | 12 | 111 | 9 | 110 | 3.18e-17 | 75.1 |
| Msa0456140 | MtrunA17_Chr7g0233531 | 38.095 | 105 | 57 | 2 | 25 | 123 | 1 | 103 | 5.10e-17 | 77.0 |
| Msa0456140 | MtrunA17_Chr1g0162441 | 40.000 | 85 | 49 | 1 | 12 | 94 | 7 | 91 | 1.18e-16 | 77.0 |
| Msa0456140 | MtrunA17_Chr4g0033961 | 31.061 | 132 | 75 | 3 | 12 | 127 | 6 | 137 | 2.38e-16 | 76.3 |
| Msa0456140 | MtrunA17_Chr1g0171611 | 33.333 | 111 | 64 | 3 | 9 | 111 | 6 | 114 | 6.43e-16 | 73.9 |
| Msa0456140 | MtrunA17_Chr1g0163241 | 34.286 | 105 | 55 | 3 | 12 | 110 | 15 | 111 | 8.72e-16 | 71.6 |
| Msa0456140 | MtrunA17_Chr1g0163231 | 33.071 | 127 | 68 | 4 | 9 | 120 | 6 | 130 | 1.05e-15 | 73.6 |
| Msa0456140 | MtrunA17_Chr1g0163261 | 27.225 | 191 | 129 | 3 | 9 | 191 | 6 | 194 | 1.50e-15 | 73.2 |
| Msa0456140 | MtrunA17_Chr1g0163131 | 32.374 | 139 | 79 | 6 | 2 | 128 | 8 | 143 | 4.13e-15 | 72.0 |
| Msa0456140 | MtrunA17_Chr3g0077411 | 40.206 | 97 | 55 | 2 | 12 | 106 | 25 | 120 | 5.24e-14 | 69.7 |
| Msa0456140 | MtrunA17_Chr3g0077411 | 27.368 | 190 | 114 | 5 | 1 | 186 | 251 | 420 | 8.81e-13 | 65.9 |
| Msa0456140 | MtrunA17_Chr3g0077451 | 39.080 | 87 | 52 | 1 | 20 | 106 | 6 | 91 | 5.29e-14 | 68.2 |
| Msa0456140 | MtrunA17_Chr3g0077461 | 38.532 | 109 | 60 | 3 | 4 | 106 | 225 | 332 | 6.96e-14 | 69.3 |
| Msa0456140 | MtrunA17_Chr3g0077461 | 40.244 | 82 | 48 | 1 | 25 | 106 | 22 | 102 | 1.12e-12 | 65.5 |
| Msa0456140 | MtrunA17_Chr1g0163061 | 39.362 | 94 | 54 | 2 | 8 | 98 | 11 | 104 | 7.68e-14 | 68.2 |
| Msa0456140 | MtrunA17_Chr3g0077381 | 35.417 | 96 | 56 | 1 | 13 | 102 | 23 | 118 | 1.67e-13 | 68.2 |
| Msa0456140 | MtrunA17_Chr3g0077381 | 36.559 | 93 | 56 | 2 | 16 | 106 | 251 | 342 | 1.78e-11 | 62.0 |
| Msa0456140 | MtrunA17_Chr1g0163201 | 33.333 | 93 | 54 | 2 | 25 | 111 | 18 | 108 | 1.85e-13 | 67.8 |
| Msa0456140 | MtrunA17_Chr5g0429931 | 39.286 | 84 | 45 | 1 | 25 | 102 | 10 | 93 | 2.84e-13 | 66.2 |
| Msa0456140 | MtrunA17_Chr1g0162411 | 37.647 | 85 | 51 | 1 | 12 | 94 | 7 | 91 | 3.54e-13 | 67.0 |
| Msa0456140 | MtrunA17_Chr6g0467351 | 29.508 | 183 | 106 | 5 | 10 | 183 | 13 | 181 | 5.01e-13 | 65.5 |
| Msa0456140 | MtrunA17_Chr4g0009491 | 36.559 | 93 | 56 | 2 | 16 | 106 | 229 | 320 | 9.16e-13 | 65.9 |
| Msa0456140 | MtrunA17_Chr6g0476181 | 36.792 | 106 | 58 | 3 | 26 | 125 | 2 | 104 | 5.97e-12 | 61.2 |
| Msa0456140 | MtrunA17_Chr1g0163141 | 36.364 | 99 | 54 | 3 | 24 | 116 | 9 | 104 | 1.12e-11 | 60.8 |
| Msa0456140 | MtrunA17_Chr1g0163161 | 36.275 | 102 | 50 | 4 | 38 | 127 | 1 | 99 | 1.27e-11 | 59.7 |
| Msa0456140 | MtrunA17_Chr1g0162161 | 32.000 | 125 | 71 | 5 | 26 | 139 | 4 | 125 | 1.57e-11 | 60.1 |
| Msa0456140 | MtrunA17_Chr3g0077361 | 36.735 | 98 | 58 | 3 | 12 | 106 | 40 | 136 | 6.28e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456140 | AT3G18990.1 | 33.913 | 115 | 67 | 3 | 8 | 113 | 1 | 115 | 6.24e-16 | 75.1 |
| Msa0456140 | AT3G18990.2 | 33.913 | 115 | 67 | 3 | 8 | 113 | 1 | 115 | 8.82e-16 | 74.7 |
| Msa0456140 | AT1G49475.1 | 36.975 | 119 | 64 | 4 | 11 | 121 | 33 | 148 | 5.18e-15 | 70.5 |
| Msa0456140 | AT4G01580.1 | 29.630 | 135 | 87 | 4 | 11 | 140 | 29 | 160 | 1.48e-14 | 68.9 |
| Msa0456140 | AT3G18960.1 | 33.333 | 99 | 63 | 2 | 11 | 107 | 29 | 126 | 1.19e-13 | 67.0 |
| Msa0456140 | AT3G18960.2 | 33.333 | 99 | 63 | 2 | 11 | 107 | 29 | 126 | 1.40e-13 | 66.6 |
| Msa0456140 | AT3G18960.3 | 34.940 | 83 | 53 | 1 | 25 | 107 | 8 | 89 | 2.58e-11 | 60.1 |
Find 33 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACAAAATGGAAAGTTTAT+TGG | 0.236965 | 3_3:-49545538 | Msa0456140:CDS |
| TGATGAATCAGTTAAGATTT+TGG | 0.270857 | 3_3:-49545309 | Msa0456140:CDS |
| CAATCCTATGAAGATTAGTT+TGG | 0.289306 | 3_3:+49545896 | None:intergenic |
| CTCTCTTGGACATGGCTGTT+TGG | 0.333127 | 3_3:-49545456 | Msa0456140:CDS |
| AGCCTCCAGATGGCACAAAA+TGG | 0.358243 | 3_3:-49545550 | Msa0456140:CDS |
| TTTACTGAAAACTACTCTCT+TGG | 0.364842 | 3_3:-49545470 | Msa0456140:CDS |
| AAAGAACTTCATCAATGAAT+TGG | 0.369301 | 3_3:-49545053 | Msa0456140:CDS |
| TCCTGAGCTCTAGCATCCTT+TGG | 0.372162 | 3_3:+49545030 | None:intergenic |
| TGGTGAGATTTGGTTTGAAA+AGG | 0.373936 | 3_3:-49545504 | Msa0456140:CDS |
| TCCTCCAAACTAATCTTCAT+AGG | 0.457688 | 3_3:-49545900 | Msa0456140:CDS |
| TATCTCCTAGTAAACTTACT+TGG | 0.466897 | 3_3:+49545605 | None:intergenic |
| AGATTTGGTTTGAAAAGGGT+TGG | 0.470784 | 3_3:-49545499 | Msa0456140:CDS |
| GGAGGATGATCTTGAAGAAA+CGG | 0.484427 | 3_3:+49545917 | None:intergenic |
| AAATACCAAGTAAGTTTACT+AGG | 0.486071 | 3_3:-49545610 | Msa0456140:CDS |
| CGACCACATAAGAAAATTCG+AGG | 0.488965 | 3_3:-49545233 | Msa0456140:intron |
| TTGGTGGTGTTTGAATATAA+AGG | 0.491592 | 3_3:-49545437 | Msa0456140:CDS |
| GGTGAGATTTGGTTTGAAAA+GGG | 0.495938 | 3_3:-49545503 | Msa0456140:CDS |
| TCCTATGAAGATTAGTTTGG+AGG | 0.495980 | 3_3:+49545899 | None:intergenic |
| TAACTGATTCATCATCACTA+TGG | 0.496191 | 3_3:+49545318 | None:intergenic |
| TCTTGGACATGGCTGTTTGG+TGG | 0.505898 | 3_3:-49545453 | Msa0456140:CDS |
| GCCAAAGGATGCTAGAGCTC+AGG | 0.513948 | 3_3:-49545031 | Msa0456140:CDS |
| AGTAGAATTTCTTCTAGCCA+TGG | 0.544196 | 3_3:+49545948 | None:intergenic |
| TCTGGAGGCTTTATCAACAC+TGG | 0.548906 | 3_3:+49545563 | None:intergenic |
| AAGTATGTGTACATCAAACT+TGG | 0.555627 | 3_3:+49545409 | None:intergenic |
| ATGATCTTGAAGAAACGGAT+GGG | 0.567265 | 3_3:+49545922 | None:intergenic |
| TGATCTTGAAGAAACGGATG+GGG | 0.586893 | 3_3:+49545923 | None:intergenic |
| TGAATGGCTTAATCGGAAGA+AGG | 0.588393 | 3_3:-49545285 | Msa0456140:CDS |
| GATGATCTTGAAGAAACGGA+TGG | 0.597527 | 3_3:+49545921 | None:intergenic |
| TTCATCAATGAATTGGCCAA+AGG | 0.600242 | 3_3:-49545046 | Msa0456140:CDS |
| GAAAACTACTCTCTTGGACA+TGG | 0.637068 | 3_3:-49545464 | Msa0456140:CDS |
| TTCATCAACAGTGTCACATG+AGG | 0.640488 | 3_3:+49545358 | None:intergenic |
| GTGTTGATAAAGCCTCCAGA+TGG | 0.642614 | 3_3:-49545560 | Msa0456140:CDS |
| TGTGGTCGAGGAGAAACGAA+AGG | 0.658286 | 3_3:+49545248 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAGCACAAGAAATTTTATTA+TGG | - | chr3_3:49545074-49545093 | Msa0456140:CDS | 20.0% |
| !! | TAAAAATTAAATAACCCCTT+TGG | + | chr3_3:49545187-49545206 | None:intergenic | 20.0% |
| !! | GTTTATTGGAAAAAAATCAA+TGG | - | chr3_3:49545297-49545316 | Msa0456140:CDS | 20.0% |
| !!! | TTTCTTTTCAGTATTGATAA+TGG | - | chr3_3:49545630-49545649 | Msa0456140:intron | 20.0% |
| !!! | TAGCACAAGAAATTTTATTA+TGG | - | chr3_3:49545074-49545093 | Msa0456140:CDS | 20.0% |
| !! | TAAAAATTAAATAACCCCTT+TGG | + | chr3_3:49545187-49545206 | None:intergenic | 20.0% |
| !! | GTTTATTGGAAAAAAATCAA+TGG | - | chr3_3:49545297-49545316 | Msa0456140:CDS | 20.0% |
| !!! | TTTCTTTTCAGTATTGATAA+TGG | - | chr3_3:49545630-49545649 | Msa0456140:intron | 20.0% |
| !! | AAGTAAATTACTGTACTGAT+AGG | + | chr3_3:49544959-49544978 | None:intergenic | 25.0% |
| ! | AAATACCAAGTAAGTTTACT+AGG | - | chr3_3:49545211-49545230 | Msa0456140:intron | 25.0% |
| ! | AAAAAATCAATGGTGAGATT+TGG | - | chr3_3:49545307-49545326 | Msa0456140:CDS | 25.0% |
| !! | TGATGAATCAGTTAAGATTT+TGG | - | chr3_3:49545512-49545531 | Msa0456140:CDS | 25.0% |
| ! | AAAGAACTTCATCAATGAAT+TGG | - | chr3_3:49545768-49545787 | Msa0456140:intron | 25.0% |
| ! | ACATTTACATTAATCCATTC+TGG | - | chr3_3:49545883-49545902 | Msa0456140:intron | 25.0% |
| !! | AAGTAAATTACTGTACTGAT+AGG | + | chr3_3:49544959-49544978 | None:intergenic | 25.0% |
| ! | AAATACCAAGTAAGTTTACT+AGG | - | chr3_3:49545211-49545230 | Msa0456140:intron | 25.0% |
| ! | AAAAAATCAATGGTGAGATT+TGG | - | chr3_3:49545307-49545326 | Msa0456140:CDS | 25.0% |
| !! | TGATGAATCAGTTAAGATTT+TGG | - | chr3_3:49545512-49545531 | Msa0456140:CDS | 25.0% |
| ! | AAAGAACTTCATCAATGAAT+TGG | - | chr3_3:49545768-49545787 | Msa0456140:intron | 25.0% |
| ! | ACATTTACATTAATCCATTC+TGG | - | chr3_3:49545883-49545902 | Msa0456140:intron | 25.0% |
| ! | CAATCCTATGAAGATTAGTT+TGG | + | chr3_3:49544928-49544947 | None:intergenic | 30.0% |
| TCTGTTTACAATATTAGCAC+TGG | - | chr3_3:49545028-49545047 | Msa0456140:CDS | 30.0% | |
| TATCTCCTAGTAAACTTACT+TGG | + | chr3_3:49545219-49545238 | None:intergenic | 30.0% | |
| GCACAAAATGGAAAGTTTAT+TGG | - | chr3_3:49545283-49545302 | Msa0456140:CDS | 30.0% | |
| TTTACTGAAAACTACTCTCT+TGG | - | chr3_3:49545351-49545370 | Msa0456140:CDS | 30.0% | |
| !! | TTGGTGGTGTTTGAATATAA+AGG | - | chr3_3:49545384-49545403 | Msa0456140:intron | 30.0% |
| AAGTATGTGTACATCAAACT+TGG | + | chr3_3:49545415-49545434 | None:intergenic | 30.0% | |
| AAGTTTGATGTACACATACT+TGG | - | chr3_3:49545414-49545433 | Msa0456140:intron | 30.0% | |
| !! | AATCTATTTCTACTGCATTC+TGG | + | chr3_3:49545440-49545459 | None:intergenic | 30.0% |
| ! | TAACTGATTCATCATCACTA+TGG | + | chr3_3:49545506-49545525 | None:intergenic | 30.0% |
| ! | CAGTTAAGATTTTGGATGAA+TGG | - | chr3_3:49545520-49545539 | Msa0456140:CDS | 30.0% |
| ! | TTTTGGATGAATGGCTTAAT+CGG | - | chr3_3:49545529-49545548 | Msa0456140:CDS | 30.0% |
| ! | AAACCTCGAATTTTCTTATG+TGG | + | chr3_3:49545594-49545613 | None:intergenic | 30.0% |
| ACATAAGAAAATTCGAGGTT+TGG | - | chr3_3:49545593-49545612 | Msa0456140:CDS | 30.0% | |
| GAGATGAGAATTGTGAAAAA+AGG | + | chr3_3:49545845-49545864 | None:intergenic | 30.0% | |
| ! | TTTTCACAATTCTCATCTCA+TGG | - | chr3_3:49545846-49545865 | Msa0456140:intron | 30.0% |
| ! | CAATCCTATGAAGATTAGTT+TGG | + | chr3_3:49544928-49544947 | None:intergenic | 30.0% |
| TCTGTTTACAATATTAGCAC+TGG | - | chr3_3:49545028-49545047 | Msa0456140:CDS | 30.0% | |
| TATCTCCTAGTAAACTTACT+TGG | + | chr3_3:49545219-49545238 | None:intergenic | 30.0% | |
| GCACAAAATGGAAAGTTTAT+TGG | - | chr3_3:49545283-49545302 | Msa0456140:CDS | 30.0% | |
| TTTACTGAAAACTACTCTCT+TGG | - | chr3_3:49545351-49545370 | Msa0456140:CDS | 30.0% | |
| !! | TTGGTGGTGTTTGAATATAA+AGG | - | chr3_3:49545384-49545403 | Msa0456140:intron | 30.0% |
| AAGTATGTGTACATCAAACT+TGG | + | chr3_3:49545415-49545434 | None:intergenic | 30.0% | |
| AAGTTTGATGTACACATACT+TGG | - | chr3_3:49545414-49545433 | Msa0456140:intron | 30.0% | |
| !! | AATCTATTTCTACTGCATTC+TGG | + | chr3_3:49545440-49545459 | None:intergenic | 30.0% |
| ! | TAACTGATTCATCATCACTA+TGG | + | chr3_3:49545506-49545525 | None:intergenic | 30.0% |
| ! | CAGTTAAGATTTTGGATGAA+TGG | - | chr3_3:49545520-49545539 | Msa0456140:CDS | 30.0% |
| ! | TTTTGGATGAATGGCTTAAT+CGG | - | chr3_3:49545529-49545548 | Msa0456140:CDS | 30.0% |
| ! | AAACCTCGAATTTTCTTATG+TGG | + | chr3_3:49545594-49545613 | None:intergenic | 30.0% |
| ACATAAGAAAATTCGAGGTT+TGG | - | chr3_3:49545593-49545612 | Msa0456140:CDS | 30.0% | |
| GAGATGAGAATTGTGAAAAA+AGG | + | chr3_3:49545845-49545864 | None:intergenic | 30.0% | |
| ! | TTTTCACAATTCTCATCTCA+TGG | - | chr3_3:49545846-49545865 | Msa0456140:intron | 30.0% |
| ATGATCTTGAAGAAACGGAT+GGG | + | chr3_3:49544902-49544921 | None:intergenic | 35.0% | |
| TCCTCCAAACTAATCTTCAT+AGG | - | chr3_3:49544921-49544940 | Msa0456140:intron | 35.0% | |
| !! | TCCTATGAAGATTAGTTTGG+AGG | + | chr3_3:49544925-49544944 | None:intergenic | 35.0% |
| !! | TGGTGAGATTTGGTTTGAAA+AGG | - | chr3_3:49545317-49545336 | Msa0456140:CDS | 35.0% |
| !! | GGTGAGATTTGGTTTGAAAA+GGG | - | chr3_3:49545318-49545337 | Msa0456140:CDS | 35.0% |
| !! | AGATTTGGTTTGAAAAGGGT+TGG | - | chr3_3:49545322-49545341 | Msa0456140:CDS | 35.0% |
| ! | AGAAAATTCGAGGTTTGGTT+TGG | - | chr3_3:49545598-49545617 | Msa0456140:CDS | 35.0% |
| TGTGTGCAATGTAAAACTCA+TGG | + | chr3_3:49545718-49545737 | None:intergenic | 35.0% | |
| TACATTGCACACATATATGC+AGG | - | chr3_3:49545725-49545744 | Msa0456140:intron | 35.0% | |
| TTCATCAATGAATTGGCCAA+AGG | - | chr3_3:49545775-49545794 | Msa0456140:intron | 35.0% | |
| TATACATAGCATTGCCAGAA+TGG | + | chr3_3:49545900-49545919 | None:intergenic | 35.0% | |
| ATGATCTTGAAGAAACGGAT+GGG | + | chr3_3:49544902-49544921 | None:intergenic | 35.0% | |
| TCCTCCAAACTAATCTTCAT+AGG | - | chr3_3:49544921-49544940 | Msa0456140:intron | 35.0% | |
| !! | TCCTATGAAGATTAGTTTGG+AGG | + | chr3_3:49544925-49544944 | None:intergenic | 35.0% |
| !! | TGGTGAGATTTGGTTTGAAA+AGG | - | chr3_3:49545317-49545336 | Msa0456140:CDS | 35.0% |
| !! | GGTGAGATTTGGTTTGAAAA+GGG | - | chr3_3:49545318-49545337 | Msa0456140:CDS | 35.0% |
| !! | AGATTTGGTTTGAAAAGGGT+TGG | - | chr3_3:49545322-49545341 | Msa0456140:CDS | 35.0% |
| ! | AGAAAATTCGAGGTTTGGTT+TGG | - | chr3_3:49545598-49545617 | Msa0456140:CDS | 35.0% |
| TGTGTGCAATGTAAAACTCA+TGG | + | chr3_3:49545718-49545737 | None:intergenic | 35.0% | |
| TACATTGCACACATATATGC+AGG | - | chr3_3:49545725-49545744 | Msa0456140:intron | 35.0% | |
| TTCATCAATGAATTGGCCAA+AGG | - | chr3_3:49545775-49545794 | Msa0456140:intron | 35.0% | |
| TATACATAGCATTGCCAGAA+TGG | + | chr3_3:49545900-49545919 | None:intergenic | 35.0% | |
| TGATCTTGAAGAAACGGATG+GGG | + | chr3_3:49544901-49544920 | None:intergenic | 40.0% | |
| GATGATCTTGAAGAAACGGA+TGG | + | chr3_3:49544903-49544922 | None:intergenic | 40.0% | |
| GGAGGATGATCTTGAAGAAA+CGG | + | chr3_3:49544907-49544926 | None:intergenic | 40.0% | |
| ! | ACTTTCCATTTTGTGCCATC+TGG | + | chr3_3:49545279-49545298 | None:intergenic | 40.0% |
| GAAAACTACTCTCTTGGACA+TGG | - | chr3_3:49545357-49545376 | Msa0456140:CDS | 40.0% | |
| TTCATCAACAGTGTCACATG+AGG | + | chr3_3:49545466-49545485 | None:intergenic | 40.0% | |
| TGAATGGCTTAATCGGAAGA+AGG | - | chr3_3:49545536-49545555 | Msa0456140:CDS | 40.0% | |
| ! | CGAATTTTCTTATGTGGTCG+AGG | + | chr3_3:49545588-49545607 | None:intergenic | 40.0% |
| CGACCACATAAGAAAATTCG+AGG | - | chr3_3:49545588-49545607 | Msa0456140:CDS | 40.0% | |
| TGATCTTGAAGAAACGGATG+GGG | + | chr3_3:49544901-49544920 | None:intergenic | 40.0% | |
| GATGATCTTGAAGAAACGGA+TGG | + | chr3_3:49544903-49544922 | None:intergenic | 40.0% | |
| GGAGGATGATCTTGAAGAAA+CGG | + | chr3_3:49544907-49544926 | None:intergenic | 40.0% | |
| ! | ACTTTCCATTTTGTGCCATC+TGG | + | chr3_3:49545279-49545298 | None:intergenic | 40.0% |
| GAAAACTACTCTCTTGGACA+TGG | - | chr3_3:49545357-49545376 | Msa0456140:CDS | 40.0% | |
| TTCATCAACAGTGTCACATG+AGG | + | chr3_3:49545466-49545485 | None:intergenic | 40.0% | |
| TGAATGGCTTAATCGGAAGA+AGG | - | chr3_3:49545536-49545555 | Msa0456140:CDS | 40.0% | |
| ! | CGAATTTTCTTATGTGGTCG+AGG | + | chr3_3:49545588-49545607 | None:intergenic | 40.0% |
| CGACCACATAAGAAAATTCG+AGG | - | chr3_3:49545588-49545607 | Msa0456140:CDS | 40.0% | |
| ACCCTTTGCTTAGTGACCAA+AGG | - | chr3_3:49545168-49545187 | Msa0456140:intron | 45.0% | |
| CCCTTTGGTCACTAAGCAAA+GGG | + | chr3_3:49545172-49545191 | None:intergenic | 45.0% | |
| CCCTTTGCTTAGTGACCAAA+GGG | - | chr3_3:49545169-49545188 | Msa0456140:intron | 45.0% | |
| CCTTTGCTTAGTGACCAAAG+GGG | - | chr3_3:49545170-49545189 | Msa0456140:intron | 45.0% | |
| ! | TCTGGAGGCTTTATCAACAC+TGG | + | chr3_3:49545261-49545280 | None:intergenic | 45.0% |
| ! | GTGTTGATAAAGCCTCCAGA+TGG | - | chr3_3:49545261-49545280 | Msa0456140:CDS | 45.0% |
| ! | TTCCATTTTGTGCCATCTGG+AGG | + | chr3_3:49545276-49545295 | None:intergenic | 45.0% |
| ACCCTTTGCTTAGTGACCAA+AGG | - | chr3_3:49545168-49545187 | Msa0456140:intron | 45.0% | |
| CCCTTTGGTCACTAAGCAAA+GGG | + | chr3_3:49545172-49545191 | None:intergenic | 45.0% | |
| CCCTTTGCTTAGTGACCAAA+GGG | - | chr3_3:49545169-49545188 | Msa0456140:intron | 45.0% | |
| CCTTTGCTTAGTGACCAAAG+GGG | - | chr3_3:49545170-49545189 | Msa0456140:intron | 45.0% | |
| ! | TCTGGAGGCTTTATCAACAC+TGG | + | chr3_3:49545261-49545280 | None:intergenic | 45.0% |
| ! | GTGTTGATAAAGCCTCCAGA+TGG | - | chr3_3:49545261-49545280 | Msa0456140:CDS | 45.0% |
| ! | TTCCATTTTGTGCCATCTGG+AGG | + | chr3_3:49545276-49545295 | None:intergenic | 45.0% |
| CCCCTTTGGTCACTAAGCAA+AGG | + | chr3_3:49545173-49545192 | None:intergenic | 50.0% | |
| AGCCTCCAGATGGCACAAAA+TGG | - | chr3_3:49545271-49545290 | Msa0456140:CDS | 50.0% | |
| CTCTCTTGGACATGGCTGTT+TGG | - | chr3_3:49545365-49545384 | Msa0456140:CDS | 50.0% | |
| TCTTGGACATGGCTGTTTGG+TGG | - | chr3_3:49545368-49545387 | Msa0456140:CDS | 50.0% | |
| TGTGGTCGAGGAGAAACGAA+AGG | + | chr3_3:49545576-49545595 | None:intergenic | 50.0% | |
| ! | TCCTGAGCTCTAGCATCCTT+TGG | + | chr3_3:49545794-49545813 | None:intergenic | 50.0% |
| CCCCTTTGGTCACTAAGCAA+AGG | + | chr3_3:49545173-49545192 | None:intergenic | 50.0% | |
| AGCCTCCAGATGGCACAAAA+TGG | - | chr3_3:49545271-49545290 | Msa0456140:CDS | 50.0% | |
| CTCTCTTGGACATGGCTGTT+TGG | - | chr3_3:49545365-49545384 | Msa0456140:CDS | 50.0% | |
| TCTTGGACATGGCTGTTTGG+TGG | - | chr3_3:49545368-49545387 | Msa0456140:CDS | 50.0% | |
| TGTGGTCGAGGAGAAACGAA+AGG | + | chr3_3:49545576-49545595 | None:intergenic | 50.0% | |
| ! | TCCTGAGCTCTAGCATCCTT+TGG | + | chr3_3:49545794-49545813 | None:intergenic | 50.0% |
| GCCAAAGGATGCTAGAGCTC+AGG | - | chr3_3:49545790-49545809 | Msa0456140:intron | 55.0% | |
| GCCAAAGGATGCTAGAGCTC+AGG | - | chr3_3:49545790-49545809 | Msa0456140:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 49544875 | 49545968 | 49544875 | ID=Msa0456140;Name=Msa0456140 |
| chr3_3 | mRNA | 49544875 | 49545968 | 49544875 | ID=Msa0456140-mRNA-1;Parent=Msa0456140;Name=Msa0456140-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0|0|1|0.5|0.4|5|0|193 |
| chr3_3 | exon | 49545897 | 49545968 | 49545897 | ID=Msa0456140-mRNA-1:exon:9394;Parent=Msa0456140-mRNA-1 |
| chr3_3 | exon | 49545421 | 49545633 | 49545421 | ID=Msa0456140-mRNA-1:exon:9393;Parent=Msa0456140-mRNA-1 |
| chr3_3 | exon | 49545234 | 49545402 | 49545234 | ID=Msa0456140-mRNA-1:exon:9392;Parent=Msa0456140-mRNA-1 |
| chr3_3 | exon | 49544976 | 49545096 | 49544976 | ID=Msa0456140-mRNA-1:exon:9391;Parent=Msa0456140-mRNA-1 |
| chr3_3 | exon | 49544875 | 49544881 | 49544875 | ID=Msa0456140-mRNA-1:exon:9390;Parent=Msa0456140-mRNA-1 |
| chr3_3 | CDS | 49545897 | 49545968 | 49545897 | ID=Msa0456140-mRNA-1:cds;Parent=Msa0456140-mRNA-1 |
| chr3_3 | CDS | 49545421 | 49545633 | 49545421 | ID=Msa0456140-mRNA-1:cds;Parent=Msa0456140-mRNA-1 |
| chr3_3 | CDS | 49545234 | 49545402 | 49545234 | ID=Msa0456140-mRNA-1:cds;Parent=Msa0456140-mRNA-1 |
| chr3_3 | CDS | 49544976 | 49545096 | 49544976 | ID=Msa0456140-mRNA-1:cds;Parent=Msa0456140-mRNA-1 |
| chr3_3 | CDS | 49544875 | 49544881 | 49544875 | ID=Msa0456140-mRNA-1:cds;Parent=Msa0456140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
