Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456210 | XP_039687150.1 | 73.899 | 318 | 48 | 3 | 1 | 317 | 1 | 284 | 4.83e-160 | 458 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456210 | sp|Q8L3W1|VRN1_ARATH | 26.571 | 350 | 197 | 10 | 8 | 315 | 1 | 332 | 2.66e-30 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456210 | G7IY86 | 73.899 | 318 | 48 | 3 | 1 | 317 | 1 | 284 | 2.31e-160 | 458 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0456210 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456210 | MtrunA17_Chr3g0103171 | 71.769 | 294 | 48 | 3 | 25 | 317 | 5 | 264 | 2.81e-145 | 410 |
| Msa0456210 | MtrunA17_Chr3g0103181 | 60.568 | 317 | 86 | 3 | 1 | 317 | 1 | 278 | 2.67e-130 | 372 |
| Msa0456210 | MtrunA17_Chr3g0103191 | 60.627 | 287 | 75 | 5 | 1 | 285 | 1 | 251 | 2.89e-113 | 328 |
| Msa0456210 | MtrunA17_Chr3g0103151 | 80.795 | 151 | 29 | 0 | 1 | 151 | 1 | 151 | 1.21e-90 | 267 |
| Msa0456210 | MtrunA17_Chr3g0103201 | 55.294 | 255 | 76 | 4 | 65 | 317 | 1 | 219 | 3.10e-88 | 263 |
| Msa0456210 | MtrunA17_Chr3g0103161 | 63.433 | 134 | 41 | 1 | 189 | 322 | 2 | 127 | 1.30e-51 | 166 |
| Msa0456210 | MtrunA17_Chr1g0208771 | 31.629 | 313 | 172 | 8 | 21 | 321 | 10 | 292 | 1.76e-37 | 139 |
| Msa0456210 | MtrunA17_Chr1g0208771 | 36.885 | 122 | 68 | 3 | 203 | 322 | 347 | 461 | 9.92e-15 | 74.7 |
| Msa0456210 | MtrunA17_Chr8g0390841 | 28.923 | 325 | 194 | 7 | 4 | 317 | 31 | 329 | 2.80e-36 | 136 |
| Msa0456210 | MtrunA17_Chr8g0390841 | 34.058 | 138 | 62 | 5 | 203 | 317 | 385 | 516 | 1.13e-12 | 68.6 |
| Msa0456210 | MtrunA17_Chr7g0233561 | 29.321 | 324 | 186 | 8 | 9 | 317 | 15 | 310 | 8.21e-35 | 129 |
| Msa0456210 | MtrunA17_Chr1g0163071 | 28.053 | 303 | 184 | 8 | 26 | 315 | 2 | 283 | 2.83e-33 | 124 |
| Msa0456210 | MtrunA17_Chr3g0131891 | 28.076 | 317 | 189 | 7 | 9 | 317 | 16 | 301 | 6.40e-30 | 116 |
| Msa0456210 | MtrunA17_Chr1g0163251 | 28.155 | 309 | 186 | 7 | 12 | 320 | 9 | 281 | 9.19e-29 | 114 |
| Msa0456210 | MtrunA17_Chr7g0233521 | 28.669 | 293 | 175 | 6 | 26 | 317 | 2 | 261 | 1.75e-28 | 111 |
| Msa0456210 | MtrunA17_Chr4g0067431 | 29.299 | 314 | 200 | 11 | 10 | 317 | 13 | 310 | 3.59e-28 | 111 |
| Msa0456210 | MtrunA17_Chr7g0233541 | 28.383 | 303 | 180 | 9 | 26 | 317 | 2 | 278 | 1.67e-26 | 106 |
| Msa0456210 | MtrunA17_Chr7g0233571 | 31.441 | 229 | 134 | 5 | 9 | 231 | 7 | 218 | 3.87e-26 | 103 |
| Msa0456210 | MtrunA17_Chr1g0163181 | 27.439 | 328 | 169 | 12 | 14 | 318 | 11 | 292 | 7.96e-25 | 103 |
| Msa0456210 | MtrunA17_Chr5g0419201 | 39.394 | 99 | 58 | 1 | 12 | 108 | 16 | 114 | 4.95e-22 | 91.7 |
| Msa0456210 | MtrunA17_Chr1g0163201 | 26.266 | 316 | 166 | 10 | 25 | 320 | 18 | 286 | 1.34e-20 | 91.7 |
| Msa0456210 | MtrunA17_Chr6g0467351 | 40.367 | 109 | 60 | 3 | 10 | 113 | 13 | 121 | 9.27e-20 | 86.7 |
| Msa0456210 | MtrunA17_Chr4g0033961 | 34.848 | 132 | 76 | 2 | 12 | 133 | 6 | 137 | 1.36e-19 | 89.0 |
| Msa0456210 | MtrunA17_Chr1g0162441 | 35.075 | 134 | 81 | 3 | 8 | 135 | 1 | 134 | 2.29e-19 | 88.2 |
| Msa0456210 | MtrunA17_Chr1g0163191 | 38.095 | 105 | 61 | 2 | 12 | 116 | 9 | 109 | 2.75e-19 | 83.6 |
| Msa0456210 | MtrunA17_Chr7g0233531 | 44.706 | 85 | 47 | 0 | 26 | 110 | 2 | 86 | 2.99e-19 | 85.9 |
| Msa0456210 | MtrunA17_Chr1g0163061 | 42.308 | 104 | 57 | 2 | 8 | 108 | 11 | 114 | 9.29e-19 | 84.3 |
| Msa0456210 | MtrunA17_Chr1g0163261 | 40.385 | 104 | 58 | 2 | 9 | 110 | 6 | 107 | 9.31e-19 | 85.1 |
| Msa0456210 | MtrunA17_Chr5g0429931 | 24.585 | 301 | 155 | 8 | 25 | 320 | 10 | 243 | 1.01e-18 | 84.0 |
| Msa0456210 | MtrunA17_Chr1g0171611 | 35.897 | 117 | 65 | 3 | 9 | 117 | 6 | 120 | 2.63e-17 | 80.9 |
| Msa0456210 | MtrunA17_Chr1g0163241 | 39.216 | 102 | 58 | 2 | 15 | 116 | 14 | 111 | 1.04e-16 | 76.6 |
| Msa0456210 | MtrunA17_Chr3g0077411 | 39.394 | 99 | 58 | 1 | 12 | 108 | 25 | 123 | 2.46e-16 | 79.7 |
| Msa0456210 | MtrunA17_Chr3g0077411 | 35.135 | 111 | 69 | 2 | 1 | 108 | 251 | 361 | 7.18e-14 | 72.0 |
| Msa0456210 | MtrunA17_Chr1g0163231 | 24.149 | 323 | 186 | 11 | 9 | 320 | 6 | 280 | 3.27e-16 | 77.8 |
| Msa0456210 | MtrunA17_Chr1g0162411 | 39.216 | 102 | 58 | 2 | 12 | 111 | 7 | 106 | 1.13e-15 | 77.4 |
| Msa0456210 | MtrunA17_Chr6g0476181 | 38.400 | 125 | 70 | 5 | 26 | 147 | 2 | 122 | 1.38e-15 | 73.2 |
| Msa0456210 | MtrunA17_Chr3g0077461 | 39.640 | 111 | 61 | 2 | 4 | 108 | 225 | 335 | 2.55e-15 | 76.3 |
| Msa0456210 | MtrunA17_Chr3g0077461 | 40.449 | 89 | 51 | 1 | 20 | 108 | 19 | 105 | 5.85e-15 | 75.5 |
| Msa0456210 | MtrunA17_Chr3g0077451 | 40.000 | 85 | 51 | 0 | 24 | 108 | 10 | 94 | 3.11e-15 | 73.9 |
| Msa0456210 | MtrunA17_Chr4g0009491 | 41.379 | 87 | 51 | 0 | 22 | 108 | 237 | 323 | 4.77e-15 | 75.5 |
| Msa0456210 | MtrunA17_Chr4g0009491 | 31.183 | 93 | 64 | 0 | 16 | 108 | 3 | 95 | 2.44e-11 | 64.3 |
| Msa0456210 | MtrunA17_Chr3g0077381 | 35.417 | 96 | 62 | 0 | 13 | 108 | 23 | 118 | 8.28e-15 | 74.7 |
| Msa0456210 | MtrunA17_Chr3g0077381 | 40.230 | 87 | 52 | 0 | 22 | 108 | 259 | 345 | 1.10e-13 | 71.2 |
| Msa0456210 | MtrunA17_Chr1g0163131 | 32.143 | 140 | 84 | 5 | 2 | 134 | 8 | 143 | 8.96e-15 | 73.9 |
| Msa0456210 | MtrunA17_Chr1g0163221 | 35.294 | 102 | 63 | 2 | 10 | 108 | 9 | 110 | 3.10e-14 | 72.8 |
| Msa0456210 | MtrunA17_Chr1g0163081 | 36.522 | 115 | 63 | 4 | 26 | 134 | 6 | 116 | 6.09e-13 | 65.5 |
| Msa0456210 | MtrunA17_Chr1g0163141 | 29.508 | 183 | 102 | 7 | 24 | 186 | 9 | 184 | 7.05e-13 | 66.2 |
| Msa0456210 | MtrunA17_Chr1g0163121 | 35.345 | 116 | 65 | 4 | 24 | 133 | 9 | 120 | 9.49e-13 | 65.1 |
| Msa0456210 | MtrunA17_Chr1g0163161 | 34.014 | 147 | 75 | 6 | 38 | 176 | 1 | 133 | 2.32e-12 | 63.5 |
| Msa0456210 | MtrunA17_Chr1g0163101 | 29.012 | 162 | 100 | 6 | 2 | 155 | 7 | 161 | 2.34e-12 | 64.7 |
| Msa0456210 | MtrunA17_Chr3g0077361 | 35.000 | 100 | 62 | 2 | 12 | 108 | 40 | 139 | 2.43e-12 | 67.4 |
| Msa0456210 | MtrunA17_Chr1g0162161 | 29.134 | 127 | 82 | 4 | 26 | 147 | 4 | 127 | 1.00e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456210 | AT3G18990.1 | 26.571 | 350 | 197 | 10 | 8 | 315 | 1 | 332 | 2.70e-31 | 120 |
| Msa0456210 | AT3G18990.2 | 26.571 | 350 | 197 | 10 | 8 | 315 | 1 | 332 | 6.25e-31 | 120 |
| Msa0456210 | AT4G01580.1 | 29.545 | 176 | 106 | 7 | 2 | 172 | 19 | 181 | 4.70e-16 | 75.5 |
| Msa0456210 | AT1G49475.1 | 38.393 | 112 | 62 | 3 | 11 | 120 | 33 | 139 | 6.80e-16 | 75.1 |
| Msa0456210 | AT3G18960.1 | 33.636 | 110 | 70 | 2 | 2 | 108 | 19 | 128 | 9.03e-15 | 72.4 |
| Msa0456210 | AT3G18960.2 | 33.636 | 110 | 70 | 2 | 2 | 108 | 19 | 128 | 1.14e-14 | 72.0 |
| Msa0456210 | AT3G18960.3 | 38.095 | 84 | 52 | 0 | 25 | 108 | 8 | 91 | 2.82e-12 | 64.7 |
| Msa0456210 | AT1G49480.3 | 28.244 | 131 | 76 | 4 | 190 | 315 | 100 | 217 | 3.89e-12 | 65.5 |
| Msa0456210 | AT1G49480.1 | 28.244 | 131 | 76 | 4 | 190 | 315 | 100 | 217 | 3.89e-12 | 65.5 |
| Msa0456210 | AT1G49480.2 | 28.244 | 131 | 76 | 4 | 190 | 315 | 100 | 217 | 3.89e-12 | 65.5 |
Find 53 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCTTCTTGTAAACTTATT+TGG | 0.150133 | 3_3:+49676909 | None:intergenic |
| GCACTAAATGGAAAATTTAT+TGG | 0.191450 | 3_3:-49676842 | Msa0456210:CDS |
| AAGTTTGATGTACTCATATT+TGG | 0.197833 | 3_3:-49676711 | Msa0456210:CDS |
| AAGCTCCTGATAGCACTAAA+TGG | 0.320337 | 3_3:-49676854 | Msa0456210:CDS |
| GATACATTAACTGTCACTTT+TGG | 0.350344 | 3_3:+49674761 | None:intergenic |
| CTCTCTAGGACATGGGTGTT+TGG | 0.352855 | 3_3:-49676760 | Msa0456210:CDS |
| ACTGATAAACAAGAAAGATT+TGG | 0.358474 | 3_3:-49674802 | Msa0456210:CDS |
| AAAGAACTTCATCCTTGAAT+TGG | 0.360316 | 3_3:-49675239 | Msa0456210:CDS |
| TGGTGAGATTTGGTTTGAAA+AGG | 0.373936 | 3_3:-49676808 | Msa0456210:CDS |
| ACCGCTAAATTTCTTATTCG+AGG | 0.375224 | 3_3:+49676540 | None:intergenic |
| TTACTACATTTATTCATTCA+TGG | 0.381425 | 3_3:-49675095 | Msa0456210:CDS |
| GTCAAATAGAGCTAGAGTTC+AGG | 0.400167 | 3_3:-49675217 | Msa0456210:CDS |
| AAAACAAATAATTAAACTCT+TGG | 0.411853 | 3_3:+49675304 | None:intergenic |
| ACGAGTCGTCGCCTTTCGGC+TGG | 0.436357 | 3_3:-49674882 | Msa0456210:CDS |
| TACTACATTTATTCATTCAT+GGG | 0.437716 | 3_3:-49675094 | Msa0456210:CDS |
| TTTACTCAAAATTACTCTCT+AGG | 0.440048 | 3_3:-49676774 | Msa0456210:CDS |
| TTGGTAGTGTTCAAATATAA+AGG | 0.440378 | 3_3:-49676741 | Msa0456210:CDS |
| AGCTCTATTTGACCAATTCA+AGG | 0.446743 | 3_3:+49675227 | None:intergenic |
| TGAGACGAGTCGTCGCCTTT+CGG | 0.455188 | 3_3:-49674886 | Msa0456210:CDS |
| TCCTCGAATAAGAAATTTAG+CGG | 0.455770 | 3_3:-49676541 | Msa0456210:intron |
| AGATTTGGTTTGAAAAGGGT+TGG | 0.470784 | 3_3:-49676803 | Msa0456210:CDS |
| ACAAATAATTAAACTCTTGG+AGG | 0.475321 | 3_3:+49675307 | None:intergenic |
| AAGAATCTGGTGGTTCAGAT+TGG | 0.475382 | 3_3:-49674951 | Msa0456210:CDS |
| TGAGAACGAGGAGAAGAATC+TGG | 0.480602 | 3_3:-49674964 | Msa0456210:CDS |
| TGCTAGCAAGTCGGCCGGTA+GGG | 0.481518 | 3_3:-49675131 | Msa0456210:CDS |
| TGCAGTTGGTCTATCAAATC+CGG | 0.483535 | 3_3:-49676886 | Msa0456210:CDS |
| CTCGTCTCATACTCGTAAGA+AGG | 0.484642 | 3_3:+49674900 | None:intergenic |
| CGACTTGCTAGCAGATGATT+AGG | 0.494009 | 3_3:+49675141 | None:intergenic |
| GGTGAGATTTGGTTTGAAAA+GGG | 0.495938 | 3_3:-49676807 | Msa0456210:CDS |
| TTCTTCAAACTAATCTTCAA+AGG | 0.500110 | 3_3:-49677562 | Msa0456210:CDS |
| CTGCTAGCAAGTCGGCCGGT+AGG | 0.500885 | 3_3:-49675132 | Msa0456210:CDS |
| AATGTTGTGTTTGACCCTAC+CGG | 0.515823 | 3_3:+49675117 | None:intergenic |
| TCCTTGTTTGTAAGTGAAAG+TGG | 0.521025 | 3_3:-49674855 | Msa0456210:CDS |
| TTCAGATTGGAGAAAGATCA+TGG | 0.525950 | 3_3:-49674938 | Msa0456210:CDS |
| CAAAATTACTCTCTAGGACA+TGG | 0.526022 | 3_3:-49676768 | Msa0456210:CDS |
| TTTAAAGAAACGGATGGGAA+GGG | 0.534149 | 3_3:+49677589 | None:intergenic |
| GTCGTCGCCTTTCGGCTGGT+TGG | 0.538217 | 3_3:-49674878 | Msa0456210:CDS |
| GGTAGCATTTCTCCTTGCCA+TGG | 0.560827 | 3_3:+49677610 | None:intergenic |
| TTCTCACCTGCATATATGTG+TGG | 0.580877 | 3_3:+49675276 | None:intergenic |
| AAAATTACTCTCTAGGACAT+GGG | 0.594435 | 3_3:-49676767 | Msa0456210:CDS |
| ACTACATTTATTCATTCATG+GGG | 0.601222 | 3_3:-49675093 | Msa0456210:intron |
| TCCACTTTCACTTACAAACA+AGG | 0.605224 | 3_3:+49674854 | None:intergenic |
| AAACTCCATCATCCATGGCA+AGG | 0.607415 | 3_3:-49677622 | None:intergenic |
| ACAAGGACCAACCAGCCGAA+AGG | 0.612648 | 3_3:+49674871 | None:intergenic |
| TCGTCTCATACTCGTAAGAA+GGG | 0.615477 | 3_3:+49674901 | None:intergenic |
| TCAGGAGCTTTGATCAACAC+CGG | 0.617194 | 3_3:+49676867 | None:intergenic |
| TTTACAAGAAGACATGCAGT+TGG | 0.624508 | 3_3:-49676900 | Msa0456210:CDS |
| TAAAGGGGTTATTGAGAACG+AGG | 0.629531 | 3_3:-49674976 | Msa0456210:intron |
| AGTGAAAGTGGATTGCAACA+AGG | 0.630326 | 3_3:-49674843 | Msa0456210:CDS |
| GATGATGAGAATGACAATGT+TGG | 0.630769 | 3_3:-49676645 | Msa0456210:CDS |
| TCATCTGCTAGCAAGTCGGC+CGG | 0.639220 | 3_3:-49675136 | Msa0456210:CDS |
| CTAATCATCTGCTAGCAAGT+CGG | 0.639274 | 3_3:-49675140 | Msa0456210:CDS |
| GAACGAGGAGAAGAATCTGG+TGG | 0.714170 | 3_3:-49674961 | Msa0456210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTATTTTATTTTATTT+TGG | - | chr3_3:49675887-49675906 | Msa0456210:intron | 0.0% |
| !!! | ATTTTATTTTATTTTATTTT+GGG | - | chr3_3:49675888-49675907 | Msa0456210:intron | 0.0% |
| !!! | TATTTATTTATTTTCTTTGT+TGG | - | chr3_3:49675191-49675210 | Msa0456210:CDS | 10.0% |
| !!! | TATTTATTTATTTTCTTTGT+TGG | - | chr3_3:49675191-49675210 | Msa0456210:CDS | 10.0% |
| !!! | GTTTTTTTTTTTTTTTTTGA+AGG | - | chr3_3:49675993-49676012 | Msa0456210:intron | 10.0% |
| !!! | GAAGAATAATTTTAAAGAAA+CGG | + | chr3_3:49674799-49674818 | None:intergenic | 15.0% |
| !! | TAATAAAAAGATATATATGC+TGG | + | chr3_3:49674873-49674892 | None:intergenic | 15.0% |
| !! | ATTGGAATAATGTTTAATTA+AGG | - | chr3_3:49675036-49675055 | Msa0456210:intron | 15.0% |
| !! | AAATAAATTGAGAAAAACAT+TGG | + | chr3_3:49675176-49675195 | None:intergenic | 15.0% |
| !! | ATTTATTGGAAAAAAATCAA+TGG | - | chr3_3:49675547-49675566 | Msa0456210:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTTGAAGG+AGG | - | chr3_3:49675996-49676015 | Msa0456210:intron | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | + | chr3_3:49676281-49676300 | None:intergenic | 15.0% |
| !! | AAACTAATCAATAGTTAATA+AGG | + | chr3_3:49676290-49676309 | None:intergenic | 15.0% |
| !! | AAACTAATCAATAGTTAATA+AGG | + | chr3_3:49676290-49676309 | None:intergenic | 15.0% |
| !!! | TTTTTTACTAAATTAGTTTC+TGG | - | chr3_3:49676670-49676689 | Msa0456210:CDS | 15.0% |
| !!! | TAATATTTTTCTATTTGTTC+AGG | - | chr3_3:49676770-49676789 | Msa0456210:CDS | 15.0% |
| !! | AAAACAAATAATTAAACTCT+TGG | + | chr3_3:49677074-49677093 | None:intergenic | 15.0% |
| !!! | ATAATTTTAAAGAAACGGAT+GGG | + | chr3_3:49674794-49674813 | None:intergenic | 20.0% |
| !!! | AATAATTTTAAAGAAACGGA+TGG | + | chr3_3:49674795-49674814 | None:intergenic | 20.0% |
| !!! | AAAAATTTAAGAAGCCTTTT+TGG | + | chr3_3:49675436-49675455 | None:intergenic | 20.0% |
| !! | GTCAAAAACATTATATTTAG+AGG | + | chr3_3:49676040-49676059 | None:intergenic | 20.0% |
| !! | AATGATTAAAAGAAAGAGAA+TGG | - | chr3_3:49676247-49676266 | Msa0456210:intron | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | - | chr3_3:49676366-49676385 | Msa0456210:intron | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | - | chr3_3:49676366-49676385 | Msa0456210:intron | 20.0% |
| !! | TTTGTTGAACTAAAGATTAA+AGG | + | chr3_3:49676818-49676837 | None:intergenic | 20.0% |
| !! | TTACTACATTTATTCATTCA+TGG | - | chr3_3:49677280-49677299 | Msa0456210:intron | 20.0% |
| !! | TACTACATTTATTCATTCAT+GGG | - | chr3_3:49677281-49677300 | Msa0456210:intron | 20.0% |
| !! | GTACCTAATATACATTTAAA+GGG | - | chr3_3:49677383-49677402 | Msa0456210:intron | 20.0% |
| !! | TACCTAATATACATTTAAAG+GGG | - | chr3_3:49677384-49677403 | Msa0456210:intron | 20.0% |
| ! | TTCTTCAAACTAATCTTCAA+AGG | - | chr3_3:49674813-49674832 | Msa0456210:CDS | 25.0% |
| ! | GAAGTCTGAATAGTAATAAT+AGG | + | chr3_3:49674851-49674870 | None:intergenic | 25.0% |
| ! | TGATCTGTTAGTATTAGTAT+TGG | - | chr3_3:49675018-49675037 | Msa0456210:intron | 25.0% |
| ! | GTTTAATTAAGGTAGTTACA+AGG | - | chr3_3:49675047-49675066 | Msa0456210:intron | 25.0% |
| !!! | CTTTTTGGTCATTTAACAAA+AGG | + | chr3_3:49675421-49675440 | None:intergenic | 25.0% |
| !! | CTTTTGTTAAATGACCAAAA+AGG | - | chr3_3:49675419-49675438 | Msa0456210:intron | 25.0% |
| ! | TGTCTTCTTGTAAACTTATT+TGG | + | chr3_3:49675469-49675488 | None:intergenic | 25.0% |
| ! | GCACTAAATGGAAAATTTAT+TGG | - | chr3_3:49675533-49675552 | Msa0456210:intron | 25.0% |
| ! | AAAAAATCAATGGTGAGATT+TGG | - | chr3_3:49675557-49675576 | Msa0456210:intron | 25.0% |
| ! | TTTACTCAAAATTACTCTCT+AGG | - | chr3_3:49675601-49675620 | Msa0456210:intron | 25.0% |
| !!! | TTGGTAGTGTTCAAATATAA+AGG | - | chr3_3:49675634-49675653 | Msa0456210:intron | 25.0% |
| ! | AAGTTTGATGTACTCATATT+TGG | - | chr3_3:49675664-49675683 | Msa0456210:intron | 25.0% |
| ! | AAACTGTTAGTATTATGATG+TGG | - | chr3_3:49676141-49676160 | Msa0456210:intron | 25.0% |
| !!! | AGTAATTTAGTTCTTCAAGA+GGG | + | chr3_3:49676168-49676187 | None:intergenic | 25.0% |
| !!! | TAGTAATTTAGTTCTTCAAG+AGG | + | chr3_3:49676169-49676188 | None:intergenic | 25.0% |
| !!! | GTACGCAGTAATTTTTTTAT+TGG | - | chr3_3:49676587-49676606 | Msa0456210:CDS | 25.0% |
| ! | CTAATTACATTCAAATCAGA+CGG | + | chr3_3:49676912-49676931 | None:intergenic | 25.0% |
| ! | GCATAATTATATTTGAGCTA+AGG | + | chr3_3:49676961-49676980 | None:intergenic | 25.0% |
| ! | AAGTAATTACATTCAAAGCA+CGG | + | chr3_3:49676985-49677004 | None:intergenic | 25.0% |
| !! | TGCTTTGAATGTAATTACTT+TGG | - | chr3_3:49676985-49677004 | Msa0456210:intron | 25.0% |
| ! | ACAAATAATTAAACTCTTGG+AGG | + | chr3_3:49677071-49677090 | None:intergenic | 25.0% |
| ! | TGTATGAGAATTGTGAAAAA+AGG | + | chr3_3:49677213-49677232 | None:intergenic | 25.0% |
| ! | ACTACATTTATTCATTCATG+GGG | - | chr3_3:49677282-49677301 | Msa0456210:intron | 25.0% |
| ! | TTATACTATTATCTATGCAG+CGG | - | chr3_3:49677360-49677379 | Msa0456210:intron | 25.0% |
| ! | GGTACCTAATATACATTTAA+AGG | - | chr3_3:49677382-49677401 | Msa0456210:intron | 25.0% |
| ! | AACCCCTTTAAATGTATATT+AGG | + | chr3_3:49677389-49677408 | None:intergenic | 25.0% |
| ! | ACTGATAAACAAGAAAGATT+TGG | - | chr3_3:49677573-49677592 | Msa0456210:CDS | 25.0% |
| AAGCACTAGAAGTTTGATTA+GGG | - | chr3_3:49674994-49675013 | Msa0456210:intron | 30.0% | |
| ! | CATTGGTTATTTGAAAGTCA+TGG | + | chr3_3:49675159-49675178 | None:intergenic | 30.0% |
| GATGTTTATGTTGACAAGTA+TGG | + | chr3_3:49675223-49675242 | None:intergenic | 30.0% | |
| GATGTTTATGTTGACAAGTA+TGG | + | chr3_3:49675223-49675242 | None:intergenic | 30.0% | |
| ! | ATTTTCCATTTAGTGCTATC+AGG | + | chr3_3:49675529-49675548 | None:intergenic | 30.0% |
| !! | AAAATTACTCTCTAGGACAT+GGG | - | chr3_3:49675608-49675627 | Msa0456210:intron | 30.0% |
| ! | CACTTGAGATTTTAGATGAA+TGG | - | chr3_3:49675770-49675789 | Msa0456210:intron | 30.0% |
| !! | ATCAGAAGAGTGCTAAAAAA+AGG | - | chr3_3:49675797-49675816 | Msa0456210:intron | 30.0% |
| TCCTCGAATAAGAAATTTAG+CGG | - | chr3_3:49675834-49675853 | Msa0456210:intron | 30.0% | |
| TGTTGACACTTCATTCTAAA+TGG | + | chr3_3:49675939-49675958 | None:intergenic | 30.0% | |
| !! | AAACGACACTCATTTTGAAA+CGG | + | chr3_3:49676521-49676540 | None:intergenic | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | - | chr3_3:49676199-49676218 | Msa0456210:intron | 30.0% |
| CTAAAGATTAAAGGACTTGA+AGG | + | chr3_3:49676809-49676828 | None:intergenic | 30.0% | |
| ! | CGTCTGATTTGAATGTAATT+AGG | - | chr3_3:49676910-49676929 | Msa0456210:CDS | 30.0% |
| TATATTTGAGCTAAGGTTAG+TGG | + | chr3_3:49676954-49676973 | None:intergenic | 30.0% | |
| !!! | GATGTTAATTTGCTGTTTTC+AGG | + | chr3_3:49677022-49677041 | None:intergenic | 30.0% |
| ! | TATTTTCCACACATATATGC+AGG | - | chr3_3:49677093-49677112 | Msa0456210:intron | 30.0% |
| AAAGAACTTCATCCTTGAAT+TGG | - | chr3_3:49677136-49677155 | Msa0456210:intron | 30.0% | |
| TATACTATTATCTATGCAGC+GGG | - | chr3_3:49677361-49677380 | Msa0456210:intron | 30.0% | |
| TTTAAAGAAACGGATGGGAA+GGG | + | chr3_3:49674789-49674808 | None:intergenic | 35.0% | |
| !! | TTTTAAAGAAACGGATGGGA+AGG | + | chr3_3:49674790-49674809 | None:intergenic | 35.0% |
| AATGTTGTAACTGCAACTGT+TGG | + | chr3_3:49674900-49674919 | None:intergenic | 35.0% | |
| GCTTGCATGTATATATGTGT+AGG | + | chr3_3:49674978-49674997 | None:intergenic | 35.0% | |
| CAAGCACTAGAAGTTTGATT+AGG | - | chr3_3:49674993-49675012 | Msa0456210:intron | 35.0% | |
| !! | TGAGCGTTTGTATTTCTAGA+AGG | - | chr3_3:49675260-49675279 | Msa0456210:CDS | 35.0% |
| !! | TGAGCGTTTGTATTTCTAGA+AGG | - | chr3_3:49675260-49675279 | Msa0456210:CDS | 35.0% |
| TTTACAAGAAGACATGCAGT+TGG | - | chr3_3:49675475-49675494 | Msa0456210:intron | 35.0% | |
| !! | TGGTGAGATTTGGTTTGAAA+AGG | - | chr3_3:49675567-49675586 | Msa0456210:intron | 35.0% |
| !! | GGTGAGATTTGGTTTGAAAA+GGG | - | chr3_3:49675568-49675587 | Msa0456210:intron | 35.0% |
| !! | AGATTTGGTTTGAAAAGGGT+TGG | - | chr3_3:49675572-49675591 | Msa0456210:intron | 35.0% |
| !! | CAAAATTACTCTCTAGGACA+TGG | - | chr3_3:49675607-49675626 | Msa0456210:intron | 35.0% |
| GATGATGAGAATGACAATGT+TGG | - | chr3_3:49675730-49675749 | Msa0456210:intron | 35.0% | |
| ACCGCTAAATTTCTTATTCG+AGG | + | chr3_3:49675838-49675857 | None:intergenic | 35.0% | |
| !! | TGAAGTGTCAACAACACTTT+TGG | - | chr3_3:49675946-49675965 | Msa0456210:intron | 35.0% |
| !!! | TCAACAACACTTTTGGTTCA+TGG | - | chr3_3:49675953-49675972 | Msa0456210:intron | 35.0% |
| !!! | CACTTTTGGTTCATGGAATA+TGG | - | chr3_3:49675960-49675979 | Msa0456210:intron | 35.0% |
| AGTAGTGTGCAGAGTATAAT+TGG | - | chr3_3:49676328-49676347 | Msa0456210:intron | 35.0% | |
| AGTAGTGTGCAGAGTATAAT+TGG | - | chr3_3:49676328-49676347 | Msa0456210:intron | 35.0% | |
| !! | AAGCGACACTCATTTTGAAA+CGG | - | chr3_3:49676556-49676575 | Msa0456210:CDS | 35.0% |
| AGCTCTATTTGACCAATTCA+AGG | + | chr3_3:49677151-49677170 | None:intergenic | 35.0% | |
| TGTGAAAAAAGGATTGCTTG+AGG | + | chr3_3:49677202-49677221 | None:intergenic | 35.0% | |
| TTCAGATTGGAGAAAGATCA+TGG | - | chr3_3:49677437-49677456 | Msa0456210:intron | 35.0% | |
| ! | TCCTTGTTTGTAAGTGAAAG+TGG | - | chr3_3:49677520-49677539 | Msa0456210:intron | 35.0% |
| TCCACTTTCACTTACAAACA+AGG | + | chr3_3:49677524-49677543 | None:intergenic | 35.0% | |
| ! | TGCAGTTGGTCTATCAAATC+CGG | - | chr3_3:49675489-49675508 | Msa0456210:intron | 40.0% |
| AAGCTCCTGATAGCACTAAA+TGG | - | chr3_3:49675521-49675540 | Msa0456210:intron | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr3_3:49676560-49676579 | None:intergenic | 40.0% |
| AGTGTGCAGAGTATAATTGG+AGG | - | chr3_3:49676331-49676350 | Msa0456210:intron | 40.0% | |
| GTGTGCAGAGTATAATTGGA+GGG | - | chr3_3:49676332-49676351 | Msa0456210:intron | 40.0% | |
| AGTGTGCAGAGTATAATTGG+AGG | - | chr3_3:49676331-49676350 | Msa0456210:intron | 40.0% | |
| GTGTGCAGAGTATAATTGGA+GGG | - | chr3_3:49676332-49676351 | Msa0456210:intron | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr3_3:49676560-49676579 | Msa0456210:CDS | 40.0% |
| TTCTCACCTGCATATATGTG+TGG | + | chr3_3:49677102-49677121 | None:intergenic | 40.0% | |
| GTCAAATAGAGCTAGAGTTC+AGG | - | chr3_3:49677158-49677177 | Msa0456210:intron | 40.0% | |
| CTAATCATCTGCTAGCAAGT+CGG | - | chr3_3:49677235-49677254 | Msa0456210:intron | 40.0% | |
| AATGTTGTGTTTGACCCTAC+CGG | + | chr3_3:49677261-49677280 | None:intergenic | 40.0% | |
| TAAAGGGGTTATTGAGAACG+AGG | - | chr3_3:49677399-49677418 | Msa0456210:intron | 40.0% | |
| AAGAATCTGGTGGTTCAGAT+TGG | - | chr3_3:49677424-49677443 | Msa0456210:intron | 40.0% | |
| TCGTCTCATACTCGTAAGAA+GGG | + | chr3_3:49677477-49677496 | None:intergenic | 40.0% | |
| !! | AGTGAAAGTGGATTGCAACA+AGG | - | chr3_3:49677532-49677551 | Msa0456210:intron | 40.0% |
| ! | TCAGGAGCTTTGATCAACAC+CGG | + | chr3_3:49675511-49675530 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr3_3:49676559-49676578 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr3_3:49676559-49676578 | Msa0456210:CDS | 45.0% |
| !! | CGACTTGCTAGCAGATGATT+AGG | + | chr3_3:49677237-49677256 | None:intergenic | 45.0% |
| TGAGAACGAGGAGAAGAATC+TGG | - | chr3_3:49677411-49677430 | Msa0456210:intron | 45.0% | |
| CTCGTCTCATACTCGTAAGA+AGG | + | chr3_3:49677478-49677497 | None:intergenic | 45.0% | |
| !! | TAAATAAATAAATTAACAAA+AGG | + | chr3_3:49675301-49675320 | None:intergenic | 5.0% |
| !! | CTCTCTAGGACATGGGTGTT+TGG | - | chr3_3:49675615-49675634 | Msa0456210:intron | 50.0% |
| GAACGAGGAGAAGAATCTGG+TGG | - | chr3_3:49677414-49677433 | Msa0456210:intron | 50.0% | |
| TCATCTGCTAGCAAGTCGGC+CGG | - | chr3_3:49677239-49677258 | Msa0456210:intron | 55.0% | |
| TGAGACGAGTCGTCGCCTTT+CGG | - | chr3_3:49677489-49677508 | Msa0456210:intron | 55.0% | |
| ACAAGGACCAACCAGCCGAA+AGG | + | chr3_3:49677507-49677526 | None:intergenic | 55.0% | |
| TGCTAGCAAGTCGGCCGGTA+GGG | - | chr3_3:49677244-49677263 | Msa0456210:intron | 60.0% | |
| CTGCTAGCAAGTCGGCCGGT+AGG | - | chr3_3:49677243-49677262 | Msa0456210:intron | 65.0% | |
| ACGAGTCGTCGCCTTTCGGC+TGG | - | chr3_3:49677493-49677512 | Msa0456210:intron | 65.0% | |
| GTCGTCGCCTTTCGGCTGGT+TGG | - | chr3_3:49677497-49677516 | Msa0456210:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 49674767 | 49677630 | 49674767 | ID=Msa0456210;Name=Msa0456210 |
| chr3_3 | mRNA | 49674767 | 49677630 | 49674767 | ID=Msa0456210-mRNA-1;Parent=Msa0456210;Name=Msa0456210-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|0.33|0.5|4|0|322 |
| chr3_3 | exon | 49677559 | 49677630 | 49677559 | ID=Msa0456210-mRNA-1:exon:9400;Parent=Msa0456210-mRNA-1 |
| chr3_3 | exon | 49676542 | 49676937 | 49676542 | ID=Msa0456210-mRNA-1:exon:9399;Parent=Msa0456210-mRNA-1 |
| chr3_3 | exon | 49675094 | 49675367 | 49675094 | ID=Msa0456210-mRNA-1:exon:9398;Parent=Msa0456210-mRNA-1 |
| chr3_3 | exon | 49674767 | 49674993 | 49674767 | ID=Msa0456210-mRNA-1:exon:9397;Parent=Msa0456210-mRNA-1 |
| chr3_3 | CDS | 49677559 | 49677630 | 49677559 | ID=Msa0456210-mRNA-1:cds;Parent=Msa0456210-mRNA-1 |
| chr3_3 | CDS | 49676542 | 49676937 | 49676542 | ID=Msa0456210-mRNA-1:cds;Parent=Msa0456210-mRNA-1 |
| chr3_3 | CDS | 49675094 | 49675367 | 49675094 | ID=Msa0456210-mRNA-1:cds;Parent=Msa0456210-mRNA-1 |
| chr3_3 | CDS | 49674767 | 49674993 | 49674767 | ID=Msa0456210-mRNA-1:cds;Parent=Msa0456210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
