Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456250 | XP_003600455.1 | 81.338 | 284 | 37 | 3 | 1 | 271 | 1 | 281 | 8.35e-163 | 462 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456250 | sp|Q8L3W1|VRN1_ARATH | 28.024 | 339 | 165 | 11 | 8 | 271 | 1 | 335 | 6.39e-29 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456250 | G8A2Z2 | 81.338 | 284 | 37 | 3 | 1 | 271 | 1 | 281 | 3.99e-163 | 462 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0456250 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456250 | MtrunA17_Chr3g0103191 | 76.892 | 251 | 45 | 1 | 1 | 238 | 1 | 251 | 8.11e-138 | 388 |
| Msa0456250 | MtrunA17_Chr3g0103181 | 70.775 | 284 | 65 | 5 | 1 | 271 | 1 | 279 | 2.07e-137 | 388 |
| Msa0456250 | MtrunA17_Chr3g0103171 | 66.794 | 262 | 71 | 3 | 25 | 271 | 5 | 265 | 2.93e-120 | 344 |
| Msa0456250 | MtrunA17_Chr3g0103201 | 77.727 | 220 | 36 | 2 | 65 | 271 | 1 | 220 | 1.29e-119 | 341 |
| Msa0456250 | MtrunA17_Chr3g0103151 | 75.926 | 162 | 37 | 2 | 1 | 161 | 1 | 161 | 2.97e-85 | 251 |
| Msa0456250 | MtrunA17_Chr7g0233561 | 36.513 | 304 | 145 | 9 | 9 | 271 | 15 | 311 | 9.54e-50 | 166 |
| Msa0456250 | MtrunA17_Chr3g0103161 | 61.983 | 121 | 34 | 1 | 162 | 270 | 2 | 122 | 7.52e-45 | 147 |
| Msa0456250 | MtrunA17_Chr8g0390841 | 32.143 | 308 | 149 | 6 | 10 | 271 | 37 | 330 | 3.81e-44 | 156 |
| Msa0456250 | MtrunA17_Chr8g0390841 | 49.231 | 65 | 32 | 1 | 207 | 271 | 454 | 517 | 1.51e-11 | 64.3 |
| Msa0456250 | MtrunA17_Chr3g0131891 | 32.414 | 290 | 166 | 6 | 9 | 271 | 16 | 302 | 8.48e-44 | 151 |
| Msa0456250 | MtrunA17_Chr1g0163071 | 32.534 | 292 | 144 | 8 | 26 | 271 | 2 | 286 | 1.31e-43 | 150 |
| Msa0456250 | MtrunA17_Chr1g0208771 | 32.192 | 292 | 139 | 5 | 25 | 271 | 12 | 289 | 4.01e-41 | 147 |
| Msa0456250 | MtrunA17_Chr1g0208771 | 25.000 | 284 | 162 | 12 | 12 | 271 | 201 | 457 | 3.68e-13 | 68.9 |
| Msa0456250 | MtrunA17_Chr7g0233521 | 32.609 | 276 | 141 | 5 | 26 | 271 | 2 | 262 | 3.17e-39 | 138 |
| Msa0456250 | MtrunA17_Chr7g0233571 | 32.889 | 225 | 117 | 3 | 4 | 203 | 2 | 217 | 4.81e-37 | 130 |
| Msa0456250 | MtrunA17_Chr7g0233541 | 30.108 | 279 | 161 | 4 | 26 | 271 | 2 | 279 | 1.17e-34 | 126 |
| Msa0456250 | MtrunA17_Chr7g0233531 | 31.203 | 266 | 158 | 5 | 26 | 271 | 2 | 262 | 1.06e-33 | 123 |
| Msa0456250 | MtrunA17_Chr4g0067431 | 30.065 | 306 | 163 | 12 | 10 | 271 | 13 | 311 | 6.43e-30 | 114 |
| Msa0456250 | MtrunA17_Chr1g0163181 | 28.671 | 286 | 170 | 9 | 14 | 270 | 11 | 291 | 1.07e-29 | 115 |
| Msa0456250 | MtrunA17_Chr1g0163131 | 29.836 | 305 | 167 | 7 | 2 | 268 | 8 | 303 | 1.43e-29 | 113 |
| Msa0456250 | MtrunA17_Chr1g0163251 | 28.571 | 280 | 169 | 7 | 12 | 270 | 9 | 278 | 7.32e-29 | 113 |
| Msa0456250 | MtrunA17_Chr3g0077451 | 29.658 | 263 | 139 | 7 | 20 | 271 | 6 | 233 | 3.57e-26 | 102 |
| Msa0456250 | MtrunA17_Chr1g0163261 | 25.874 | 286 | 178 | 8 | 9 | 270 | 6 | 281 | 3.38e-25 | 101 |
| Msa0456250 | MtrunA17_Chr5g0419201 | 33.121 | 157 | 87 | 3 | 12 | 157 | 16 | 165 | 4.93e-25 | 98.6 |
| Msa0456250 | MtrunA17_Chr1g0163201 | 26.182 | 275 | 165 | 9 | 25 | 270 | 18 | 283 | 5.76e-24 | 99.8 |
| Msa0456250 | MtrunA17_Chr5g0429931 | 29.644 | 253 | 151 | 6 | 25 | 271 | 10 | 241 | 1.26e-23 | 96.3 |
| Msa0456250 | MtrunA17_Chr1g0163221 | 29.693 | 293 | 164 | 11 | 10 | 271 | 9 | 290 | 9.39e-23 | 95.9 |
| Msa0456250 | MtrunA17_Chr3g0077461 | 29.389 | 262 | 140 | 7 | 12 | 265 | 237 | 461 | 2.56e-22 | 95.9 |
| Msa0456250 | MtrunA17_Chr3g0077461 | 26.692 | 266 | 139 | 6 | 7 | 265 | 1 | 217 | 4.18e-17 | 80.5 |
| Msa0456250 | MtrunA17_Chr3g0077411 | 27.055 | 292 | 166 | 7 | 1 | 271 | 251 | 516 | 1.79e-21 | 93.6 |
| Msa0456250 | MtrunA17_Chr3g0077411 | 27.547 | 265 | 134 | 5 | 12 | 265 | 25 | 242 | 2.81e-20 | 90.1 |
| Msa0456250 | MtrunA17_Chr1g0171611 | 26.165 | 279 | 170 | 9 | 9 | 270 | 6 | 265 | 1.90e-20 | 88.6 |
| Msa0456250 | MtrunA17_Chr1g0163191 | 37.143 | 105 | 62 | 2 | 12 | 116 | 9 | 109 | 1.90e-19 | 82.8 |
| Msa0456250 | MtrunA17_Chr1g0163231 | 26.087 | 276 | 186 | 9 | 9 | 270 | 6 | 277 | 2.19e-19 | 85.9 |
| Msa0456250 | MtrunA17_Chr1g0162441 | 37.037 | 108 | 64 | 2 | 8 | 111 | 1 | 108 | 4.43e-19 | 86.3 |
| Msa0456250 | MtrunA17_Chr3g0077421 | 29.075 | 227 | 114 | 7 | 57 | 271 | 4 | 195 | 1.29e-18 | 81.6 |
| Msa0456250 | MtrunA17_Chr3g0077441 | 29.075 | 227 | 114 | 7 | 57 | 271 | 4 | 195 | 1.29e-18 | 81.6 |
| Msa0456250 | MtrunA17_Chr1g0163061 | 41.346 | 104 | 58 | 2 | 8 | 108 | 11 | 114 | 5.17e-18 | 81.6 |
| Msa0456250 | MtrunA17_Chr1g0163241 | 34.959 | 123 | 67 | 4 | 12 | 129 | 15 | 129 | 1.14e-17 | 78.2 |
| Msa0456250 | MtrunA17_Chr4g0033961 | 30.303 | 132 | 82 | 2 | 12 | 133 | 6 | 137 | 1.26e-17 | 82.0 |
| Msa0456250 | MtrunA17_Chr6g0467351 | 26.577 | 222 | 141 | 5 | 10 | 212 | 13 | 231 | 1.47e-17 | 79.3 |
| Msa0456250 | MtrunA17_Chr3g0077431 | 28.319 | 226 | 116 | 7 | 57 | 271 | 4 | 194 | 1.49e-17 | 79.0 |
| Msa0456250 | MtrunA17_Chr1g0163121 | 39.130 | 115 | 62 | 3 | 24 | 133 | 9 | 120 | 3.48e-17 | 76.3 |
| Msa0456250 | MtrunA17_Chr3g0077381 | 26.255 | 259 | 130 | 6 | 13 | 270 | 23 | 221 | 6.24e-17 | 80.1 |
| Msa0456250 | MtrunA17_Chr3g0077381 | 37.895 | 95 | 57 | 1 | 16 | 108 | 251 | 345 | 1.81e-12 | 67.0 |
| Msa0456250 | MtrunA17_Chr1g0154131 | 24.390 | 287 | 187 | 6 | 10 | 268 | 182 | 466 | 1.44e-16 | 79.0 |
| Msa0456250 | MtrunA17_Chr1g0154161 | 24.911 | 281 | 185 | 8 | 13 | 271 | 30 | 306 | 1.48e-16 | 78.2 |
| Msa0456250 | MtrunA17_Chr1g0163081 | 39.474 | 114 | 61 | 3 | 26 | 134 | 6 | 116 | 1.91e-16 | 74.3 |
| Msa0456250 | MtrunA17_Chr6g0476181 | 39.474 | 114 | 66 | 2 | 26 | 139 | 2 | 112 | 2.92e-16 | 74.3 |
| Msa0456250 | MtrunA17_Chr1g0163101 | 31.915 | 141 | 85 | 4 | 2 | 134 | 7 | 144 | 1.23e-15 | 73.2 |
| Msa0456250 | MtrunA17_Chr1g0162161 | 34.677 | 124 | 73 | 4 | 26 | 144 | 4 | 124 | 2.46e-15 | 71.6 |
| Msa0456250 | MtrunA17_Chr3g0077361 | 25.094 | 267 | 140 | 6 | 12 | 265 | 40 | 259 | 3.63e-15 | 75.1 |
| Msa0456250 | MtrunA17_Chr1g0162411 | 36.449 | 107 | 63 | 3 | 7 | 111 | 3 | 106 | 6.58e-15 | 73.9 |
| Msa0456250 | MtrunA17_Chr1g0163161 | 40.196 | 102 | 52 | 3 | 38 | 133 | 1 | 99 | 6.58e-15 | 70.1 |
| Msa0456250 | MtrunA17_Chr4g0009491 | 38.947 | 95 | 56 | 1 | 16 | 108 | 229 | 323 | 6.27e-14 | 71.2 |
| Msa0456250 | MtrunA17_Chr4g0009491 | 23.887 | 247 | 129 | 6 | 16 | 251 | 3 | 201 | 6.18e-13 | 68.2 |
| Msa0456250 | MtrunA17_Chr1g0163141 | 39.175 | 97 | 56 | 2 | 24 | 120 | 9 | 102 | 7.70e-14 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456250 | AT3G18990.1 | 28.024 | 339 | 165 | 11 | 8 | 271 | 1 | 335 | 6.50e-30 | 115 |
| Msa0456250 | AT3G18990.2 | 28.024 | 339 | 165 | 11 | 8 | 271 | 1 | 335 | 1.50e-29 | 115 |
| Msa0456250 | AT1G49475.1 | 36.486 | 148 | 80 | 3 | 11 | 145 | 33 | 179 | 1.25e-18 | 81.6 |
| Msa0456250 | AT4G01580.1 | 34.058 | 138 | 83 | 3 | 11 | 146 | 29 | 160 | 1.72e-16 | 75.9 |
| Msa0456250 | AT3G18960.1 | 39.000 | 100 | 59 | 1 | 11 | 108 | 29 | 128 | 9.50e-16 | 74.3 |
| Msa0456250 | AT3G18960.2 | 39.000 | 100 | 59 | 1 | 11 | 108 | 29 | 128 | 9.66e-16 | 73.9 |
| Msa0456250 | AT3G18960.3 | 41.667 | 84 | 49 | 0 | 25 | 108 | 8 | 91 | 1.62e-13 | 67.4 |
| Msa0456250 | AT1G49480.3 | 31.250 | 128 | 68 | 4 | 160 | 271 | 97 | 220 | 1.39e-12 | 65.9 |
| Msa0456250 | AT1G49480.1 | 31.250 | 128 | 68 | 4 | 160 | 271 | 97 | 220 | 1.39e-12 | 65.9 |
| Msa0456250 | AT1G49480.2 | 31.250 | 128 | 68 | 4 | 160 | 271 | 97 | 220 | 1.39e-12 | 65.9 |
Find 53 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACTAAATGGAAAATTTAT+TGG | 0.195816 | 3_3:+49766640 | Msa0456250:CDS |
| TGTCTCTTTGTAAACTTTCT+TGG | 0.219902 | 3_3:-49766573 | None:intergenic |
| AGACTCCTGATGACACTAAA+TGG | 0.267004 | 3_3:+49766628 | Msa0456250:CDS |
| AATCTATTTCTACCGCATTC+TGG | 0.299695 | 3_3:-49766794 | None:intergenic |
| TTGATTTGCTTCCAGATGAT+TGG | 0.329110 | 3_3:-49767230 | None:intergenic |
| CGACCACACAAGAAAGTTAG+AGG | 0.346342 | 3_3:+49766945 | Msa0456250:CDS |
| ATTGATAAACAAGAAAGATT+TGG | 0.351442 | 3_3:+49768040 | Msa0456250:CDS |
| TTTACTGAAAATTACTCTCT+TGG | 0.379721 | 3_3:+49766708 | Msa0456250:CDS |
| TCCTTCAAACTAATCTTCAT+AGG | 0.391228 | 3_3:+49766261 | Msa0456250:CDS |
| TCCTGAGCTCTAACATCCTT+TGG | 0.395829 | 3_3:-49767154 | None:intergenic |
| CTCTCTTGGACATGGCTGCT+TGG | 0.402665 | 3_3:+49766722 | Msa0456250:CDS |
| TCCTATGAAGATTAGTTTGA+AGG | 0.404224 | 3_3:-49766262 | None:intergenic |
| TGATTTGCTTCCAGATGATT+GGG | 0.406973 | 3_3:-49767229 | None:intergenic |
| TCTCATACAGCCCAATCATC+TGG | 0.413662 | 3_3:+49767219 | Msa0456250:CDS |
| AGATTTGGTTTGAAAGGGGT+TGG | 0.435761 | 3_3:+49766679 | Msa0456250:CDS |
| AGAGAAAGTGGACTGAAATC+AGG | 0.441039 | 3_3:+49767999 | Msa0456250:CDS |
| TGGTGAGATTTGGTTTGAAA+GGG | 0.445670 | 3_3:+49766674 | Msa0456250:CDS |
| AAAGAACTTCATCAATGAAT+CGG | 0.459762 | 3_3:+49767131 | Msa0456250:CDS |
| GCCGTCGCCTTTCCGCGGGC+TGG | 0.462371 | 3_3:+49767964 | Msa0456250:CDS |
| ATGGTGAGATTTGGTTTGAA+AGG | 0.464155 | 3_3:+49766673 | Msa0456250:CDS |
| TCAGGAGTCTTTATCACCAC+TGG | 0.464260 | 3_3:-49766615 | None:intergenic |
| AAGTTTGATGTACACATACT+TGG | 0.471543 | 3_3:+49766771 | Msa0456250:CDS |
| AGAATGTGATGCTGCTGATT+GGG | 0.480788 | 3_3:+49767892 | Msa0456250:CDS |
| AAGAATGTGATGCTGCTGAT+TGG | 0.482287 | 3_3:+49767891 | Msa0456250:CDS |
| TACTTATTTGCAAGAGAAAG+TGG | 0.484810 | 3_3:+49767987 | Msa0456250:CDS |
| TCATCTGGAAGCAAATCAAC+TGG | 0.487387 | 3_3:+49767234 | Msa0456250:CDS |
| GCCAAAGGATGTTAGAGCTC+AGG | 0.500995 | 3_3:+49767153 | Msa0456250:CDS |
| CTAACTTTCTTGTGTGGTCG+AGG | 0.505612 | 3_3:-49766942 | None:intergenic |
| AAATGGCCGTCGCCTTTCCG+CGG | 0.508666 | 3_3:+49767959 | Msa0456250:CDS |
| TCTTGGACATGGCTGCTTGG+TGG | 0.517847 | 3_3:+49766725 | Msa0456250:CDS |
| TTGGTGGTGTTTGAATATAA+AGG | 0.518126 | 3_3:+49766741 | Msa0456250:CDS |
| ACCAGCCCGCGGAAAGGCGA+CGG | 0.528367 | 3_3:-49767965 | None:intergenic |
| AATGGCCGTCGCCTTTCCGC+GGG | 0.545483 | 3_3:+49767960 | Msa0456250:CDS |
| TGTGGTCGAGGAGAAACAAA+AGG | 0.547165 | 3_3:-49766930 | None:intergenic |
| ACTTCACACTCTTTCATCCA+TGG | 0.552746 | 3_3:+49766196 | None:intergenic |
| AAGTATGTGTACATCAAACT+TGG | 0.555627 | 3_3:-49766769 | None:intergenic |
| TGTATGAGAACTGTGAAGAA+AGG | 0.560242 | 3_3:-49767205 | None:intergenic |
| TGAATGGCTGAATCGGAAGA+AGG | 0.566200 | 3_3:+49766893 | Msa0456250:CDS |
| CATAGAATTTCCTCTAGCCA+TGG | 0.569082 | 3_3:-49766213 | None:intergenic |
| GAAAATGACAATGTTGATCA+TGG | 0.570162 | 3_3:+49766840 | Msa0456250:CDS |
| TGCTGATTGGGAAAAGATCA+TGG | 0.586680 | 3_3:+49767904 | Msa0456250:CDS |
| ATAAGTACCAGCCCGCGGAA+AGG | 0.595441 | 3_3:-49767971 | None:intergenic |
| TTCATCAATGAATCGGCCAA+AGG | 0.600573 | 3_3:+49767138 | Msa0456250:CDS |
| TTTACAAAGAGACATGGAGT+TGG | 0.622876 | 3_3:+49766582 | Msa0456250:CDS |
| AAACCTCTAACTTTCTTGTG+TGG | 0.625711 | 3_3:-49766948 | None:intergenic |
| GAAAATTACTCTCTTGGACA+TGG | 0.632483 | 3_3:+49766714 | Msa0456250:CDS |
| GGTGAGATTTGGTTTGAAAG+GGG | 0.635152 | 3_3:+49766675 | Msa0456250:CDS |
| TGCAAATAAGTACCAGCCCG+CGG | 0.652502 | 3_3:-49767976 | None:intergenic |
| ACTCTTTCATCCATGGCTAG+AGG | 0.653576 | 3_3:+49766203 | None:intergenic |
| AGAAAGTTTACAAAGAGACA+TGG | 0.659306 | 3_3:+49766576 | Msa0456250:CDS |
| AGTTGGTCTATCAAATCCAG+TGG | 0.699067 | 3_3:+49766599 | Msa0456250:CDS |
| ACACATACTTGGCCAGAATG+CGG | 0.704931 | 3_3:+49766782 | Msa0456250:CDS |
| TGTGAAGAAAGGATTGCATG+AGG | 0.721141 | 3_3:-49767194 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAAAGTAAATAATACTAAT+AGG | - | chr3_3:49766303-49766322 | None:intergenic | 15.0% |
| !! | ATTTATTGGAAAAAAATCAA+TGG | + | chr3_3:49766654-49766673 | Msa0456250:CDS | 15.0% |
| !! | CTAAAGTAAATAATACTAAT+AGG | - | chr3_3:49766303-49766322 | None:intergenic | 15.0% |
| !! | ATTTATTGGAAAAAAATCAA+TGG | + | chr3_3:49766654-49766673 | Msa0456250:CDS | 15.0% |
| !! | TAAAAATTAAAGAACTCCTT+TGG | - | chr3_3:49766544-49766563 | None:intergenic | 20.0% |
| !! | ACACTAAATGGAAAATTTAT+TGG | + | chr3_3:49766640-49766659 | Msa0456250:CDS | 20.0% |
| !! | TTGTAACGTTAATAACTTAT+GGG | - | chr3_3:49767733-49767752 | None:intergenic | 20.0% |
| !! | ATTGTAACGTTAATAACTTA+TGG | - | chr3_3:49767732-49767751 | None:intergenic | 20.0% |
| !! | AAGTTATTAACGTTACAATT+TGG | + | chr3_3:49767405-49767424 | Msa0456250:intron | 20.0% |
| !!! | ACGAAACTTTTAATAGTTAA+GGG | - | chr3_3:49767673-49767692 | None:intergenic | 20.0% |
| !!! | AACGAAACTTTTAATAGTTA+AGG | - | chr3_3:49767672-49767691 | None:intergenic | 20.0% |
| !!! | AACTATTAAAAGTTTCGTTT+TGG | + | chr3_3:49767465-49767484 | Msa0456250:intron | 20.0% |
| !! | GAAACCAAAAAATAAGTTAA+GGG | - | chr3_3:49767613-49767632 | None:intergenic | 20.0% |
| !! | GAAACCAAAAAATAAGTTAA+GGG | - | chr3_3:49767613-49767632 | None:intergenic | 20.0% |
| !! | GAAACCAAAAAATAAGTTAA+GGG | - | chr3_3:49767613-49767632 | None:intergenic | 20.0% |
| !! | GAAACCAAAAAATAAGTTAA+GGG | + | chr3_3:49767613-49767632 | Msa0456250:intron | 20.0% |
| !! | GAAACCAAAAAATAAGTTAA+GGG | + | chr3_3:49767613-49767632 | Msa0456250:intron | 20.0% |
| !!! | AACTATTAAAAGTTTCGTTT+TGG | - | chr3_3:49767465-49767484 | None:intergenic | 20.0% |
| !!! | AACGAAACTTTTAATAGTTA+AGG | + | chr3_3:49767672-49767691 | Msa0456250:intron | 20.0% |
| !!! | ACGAAACTTTTAATAGTTAA+GGG | + | chr3_3:49767673-49767692 | Msa0456250:intron | 20.0% |
| !! | AAGTTATTAACGTTACAATT+TGG | - | chr3_3:49767405-49767424 | None:intergenic | 20.0% |
| !! | ATTGTAACGTTAATAACTTA+TGG | + | chr3_3:49767732-49767751 | Msa0456250:intron | 20.0% |
| !! | TTGTAACGTTAATAACTTAT+GGG | + | chr3_3:49767733-49767752 | Msa0456250:intron | 20.0% |
| !!! | AGAATGTACCAAATTTTAAA+GGG | + | chr3_3:49767850-49767869 | Msa0456250:intron | 20.0% |
| !! | ATTGATAAACAAGAAAGATT+TGG | + | chr3_3:49768040-49768059 | Msa0456250:CDS | 20.0% |
| !! | TAAAAATTAAAGAACTCCTT+TGG | - | chr3_3:49766544-49766563 | None:intergenic | 20.0% |
| !! | ACACTAAATGGAAAATTTAT+TGG | + | chr3_3:49766640-49766659 | Msa0456250:CDS | 20.0% |
| !! | TTGTAACGTTAATAACTTAT+GGG | - | chr3_3:49767733-49767752 | None:intergenic | 20.0% |
| !! | ATTGTAACGTTAATAACTTA+TGG | - | chr3_3:49767732-49767751 | None:intergenic | 20.0% |
| !! | AAGTTATTAACGTTACAATT+TGG | + | chr3_3:49767405-49767424 | Msa0456250:intron | 20.0% |
| !!! | ACGAAACTTTTAATAGTTAA+GGG | - | chr3_3:49767673-49767692 | None:intergenic | 20.0% |
| !!! | AACGAAACTTTTAATAGTTA+AGG | - | chr3_3:49767672-49767691 | None:intergenic | 20.0% |
| !!! | AACTATTAAAAGTTTCGTTT+TGG | + | chr3_3:49767465-49767484 | Msa0456250:intron | 20.0% |
| !! | GAAACCAAAAAATAAGTTAA+GGG | - | chr3_3:49767613-49767632 | None:intergenic | 20.0% |
| !! | GAAACCAAAAAATAAGTTAA+GGG | - | chr3_3:49767613-49767632 | None:intergenic | 20.0% |
| !! | GAAACCAAAAAATAAGTTAA+GGG | - | chr3_3:49767613-49767632 | None:intergenic | 20.0% |
| !! | GAAACCAAAAAATAAGTTAA+GGG | + | chr3_3:49767613-49767632 | Msa0456250:intron | 20.0% |
| !! | GAAACCAAAAAATAAGTTAA+GGG | + | chr3_3:49767613-49767632 | Msa0456250:intron | 20.0% |
| !!! | AACTATTAAAAGTTTCGTTT+TGG | - | chr3_3:49767465-49767484 | None:intergenic | 20.0% |
| !!! | AACGAAACTTTTAATAGTTA+AGG | + | chr3_3:49767672-49767691 | Msa0456250:intron | 20.0% |
| !!! | ACGAAACTTTTAATAGTTAA+GGG | + | chr3_3:49767673-49767692 | Msa0456250:intron | 20.0% |
| !! | AAGTTATTAACGTTACAATT+TGG | - | chr3_3:49767405-49767424 | None:intergenic | 20.0% |
| !! | ATTGTAACGTTAATAACTTA+TGG | + | chr3_3:49767732-49767751 | Msa0456250:intron | 20.0% |
| !! | TTGTAACGTTAATAACTTAT+GGG | + | chr3_3:49767733-49767752 | Msa0456250:intron | 20.0% |
| !!! | AGAATGTACCAAATTTTAAA+GGG | + | chr3_3:49767850-49767869 | Msa0456250:intron | 20.0% |
| !! | ATTGATAAACAAGAAAGATT+TGG | + | chr3_3:49768040-49768059 | Msa0456250:CDS | 20.0% |
| !! | TAGCGCTAGAAATTTTATTA+TGG | + | chr3_3:49766431-49766450 | Msa0456250:intron | 25.0% |
| ! | AAAAAATCAATGGTGAGATT+TGG | + | chr3_3:49766664-49766683 | Msa0456250:CDS | 25.0% |
| ! | TTTACTGAAAATTACTCTCT+TGG | + | chr3_3:49766708-49766727 | Msa0456250:CDS | 25.0% |
| ! | AAAGAACTTCATCAATGAAT+CGG | + | chr3_3:49767131-49767150 | Msa0456250:CDS | 25.0% |
| ! | GTTATGCTGTGATTATAAAT+TGG | + | chr3_3:49767328-49767347 | Msa0456250:intron | 25.0% |
| !!! | AATTGGCTTAATTACTCTTT+TGG | + | chr3_3:49767345-49767364 | Msa0456250:intron | 25.0% |
| ! | GTAACCAACAAATAACTTAA+GGG | - | chr3_3:49767764-49767783 | None:intergenic | 25.0% |
| ! | TGTAACCAACAAATAACTTA+AGG | - | chr3_3:49767763-49767782 | None:intergenic | 25.0% |
| !!! | GTTATTTGTTGGTTACATTT+TGG | + | chr3_3:49767376-49767395 | Msa0456250:intron | 25.0% |
| ! | GAAACCAAAAAGTAACTTAA+GGG | - | chr3_3:49767704-49767723 | None:intergenic | 25.0% |
| ! | CGAAACCAAAAAATAAGTTA+AGG | - | chr3_3:49767612-49767631 | None:intergenic | 25.0% |
| !!! | CTTATTTTTTGGTTTCGTTT+TGG | + | chr3_3:49767496-49767515 | Msa0456250:intron | 25.0% |
| ! | CGAAACCAAAAAATAAGTTA+AGG | - | chr3_3:49767612-49767631 | None:intergenic | 25.0% |
| !!! | CTTATTTTTTGGTTTCGTTT+TGG | + | chr3_3:49767496-49767515 | Msa0456250:intron | 25.0% |
| ! | CGAAACCAAAAAATAAGTTA+AGG | - | chr3_3:49767612-49767631 | None:intergenic | 25.0% |
| !!! | CTTATTTTTTGGTTTCGTTT+TGG | + | chr3_3:49767496-49767515 | Msa0456250:intron | 25.0% |
| !!! | CTTATTTTTTGGTTTCGTTT+TGG | - | chr3_3:49767496-49767515 | None:intergenic | 25.0% |
| ! | CGAAACCAAAAAATAAGTTA+AGG | + | chr3_3:49767612-49767631 | Msa0456250:intron | 25.0% |
| !!! | CTTATTTTTTGGTTTCGTTT+TGG | - | chr3_3:49767496-49767515 | None:intergenic | 25.0% |
| ! | CGAAACCAAAAAATAAGTTA+AGG | + | chr3_3:49767612-49767631 | Msa0456250:intron | 25.0% |
| ! | GAAACCAAAAAGTAACTTAA+GGG | + | chr3_3:49767704-49767723 | Msa0456250:intron | 25.0% |
| !!! | GTTATTTGTTGGTTACATTT+TGG | - | chr3_3:49767376-49767395 | None:intergenic | 25.0% |
| ! | TGTAACCAACAAATAACTTA+AGG | + | chr3_3:49767763-49767782 | Msa0456250:intron | 25.0% |
| ! | GTAACCAACAAATAACTTAA+GGG | + | chr3_3:49767764-49767783 | Msa0456250:intron | 25.0% |
| !! | ATAAGGCTTAATTACTCTTT+TGG | - | chr3_3:49767791-49767810 | None:intergenic | 25.0% |
| !! | CAGAATGTACCAAATTTTAA+AGG | + | chr3_3:49767849-49767868 | Msa0456250:intron | 25.0% |
| !!! | GAATGTACCAAATTTTAAAG+GGG | + | chr3_3:49767851-49767870 | Msa0456250:intron | 25.0% |
| !!! | TCAATAACCCCTTTAAAATT+TGG | - | chr3_3:49767861-49767880 | None:intergenic | 25.0% |
| !! | TAGCGCTAGAAATTTTATTA+TGG | + | chr3_3:49766431-49766450 | Msa0456250:intron | 25.0% |
| ! | AAAAAATCAATGGTGAGATT+TGG | + | chr3_3:49766664-49766683 | Msa0456250:CDS | 25.0% |
| ! | TTTACTGAAAATTACTCTCT+TGG | + | chr3_3:49766708-49766727 | Msa0456250:CDS | 25.0% |
| ! | AAAGAACTTCATCAATGAAT+CGG | + | chr3_3:49767131-49767150 | Msa0456250:CDS | 25.0% |
| ! | GTTATGCTGTGATTATAAAT+TGG | + | chr3_3:49767328-49767347 | Msa0456250:intron | 25.0% |
| !!! | AATTGGCTTAATTACTCTTT+TGG | + | chr3_3:49767345-49767364 | Msa0456250:intron | 25.0% |
| ! | GTAACCAACAAATAACTTAA+GGG | - | chr3_3:49767764-49767783 | None:intergenic | 25.0% |
| ! | TGTAACCAACAAATAACTTA+AGG | - | chr3_3:49767763-49767782 | None:intergenic | 25.0% |
| !!! | GTTATTTGTTGGTTACATTT+TGG | + | chr3_3:49767376-49767395 | Msa0456250:intron | 25.0% |
| ! | GAAACCAAAAAGTAACTTAA+GGG | - | chr3_3:49767704-49767723 | None:intergenic | 25.0% |
| ! | CGAAACCAAAAAATAAGTTA+AGG | - | chr3_3:49767612-49767631 | None:intergenic | 25.0% |
| !!! | CTTATTTTTTGGTTTCGTTT+TGG | + | chr3_3:49767496-49767515 | Msa0456250:intron | 25.0% |
| ! | CGAAACCAAAAAATAAGTTA+AGG | - | chr3_3:49767612-49767631 | None:intergenic | 25.0% |
| !!! | CTTATTTTTTGGTTTCGTTT+TGG | + | chr3_3:49767496-49767515 | Msa0456250:intron | 25.0% |
| ! | CGAAACCAAAAAATAAGTTA+AGG | - | chr3_3:49767612-49767631 | None:intergenic | 25.0% |
| !!! | CTTATTTTTTGGTTTCGTTT+TGG | + | chr3_3:49767496-49767515 | Msa0456250:intron | 25.0% |
| !!! | CTTATTTTTTGGTTTCGTTT+TGG | - | chr3_3:49767496-49767515 | None:intergenic | 25.0% |
| ! | CGAAACCAAAAAATAAGTTA+AGG | + | chr3_3:49767612-49767631 | Msa0456250:intron | 25.0% |
| !!! | CTTATTTTTTGGTTTCGTTT+TGG | - | chr3_3:49767496-49767515 | None:intergenic | 25.0% |
| ! | CGAAACCAAAAAATAAGTTA+AGG | + | chr3_3:49767612-49767631 | Msa0456250:intron | 25.0% |
| ! | GAAACCAAAAAGTAACTTAA+GGG | + | chr3_3:49767704-49767723 | Msa0456250:intron | 25.0% |
| !!! | GTTATTTGTTGGTTACATTT+TGG | - | chr3_3:49767376-49767395 | None:intergenic | 25.0% |
| ! | TGTAACCAACAAATAACTTA+AGG | + | chr3_3:49767763-49767782 | Msa0456250:intron | 25.0% |
| ! | GTAACCAACAAATAACTTAA+GGG | + | chr3_3:49767764-49767783 | Msa0456250:intron | 25.0% |
| !! | ATAAGGCTTAATTACTCTTT+TGG | - | chr3_3:49767791-49767810 | None:intergenic | 25.0% |
| !! | CAGAATGTACCAAATTTTAA+AGG | + | chr3_3:49767849-49767868 | Msa0456250:intron | 25.0% |
| !!! | GAATGTACCAAATTTTAAAG+GGG | + | chr3_3:49767851-49767870 | Msa0456250:intron | 25.0% |
| !!! | TCAATAACCCCTTTAAAATT+TGG | - | chr3_3:49767861-49767880 | None:intergenic | 25.0% |
| !! | ATGATTTTGAAGAAACGGAT+GGG | - | chr3_3:49766242-49766261 | None:intergenic | 30.0% |
| !! | GAAGGATGATTTTGAAGAAA+CGG | - | chr3_3:49766247-49766266 | None:intergenic | 30.0% |
| TCCTTCAAACTAATCTTCAT+AGG | + | chr3_3:49766261-49766280 | Msa0456250:CDS | 30.0% | |
| !! | TCCTATGAAGATTAGTTTGA+AGG | - | chr3_3:49766265-49766284 | None:intergenic | 30.0% |
| TGTCTCTTTGTAAACTTTCT+TGG | - | chr3_3:49766576-49766595 | None:intergenic | 30.0% | |
| AGAAAGTTTACAAAGAGACA+TGG | + | chr3_3:49766576-49766595 | Msa0456250:CDS | 30.0% | |
| ! | ATTTTCCATTTAGTGTCATC+AGG | - | chr3_3:49766636-49766655 | None:intergenic | 30.0% |
| !! | TTGGTGGTGTTTGAATATAA+AGG | + | chr3_3:49766741-49766760 | Msa0456250:CDS | 30.0% |
| AAGTATGTGTACATCAAACT+TGG | - | chr3_3:49766772-49766791 | None:intergenic | 30.0% | |
| AAGTTTGATGTACACATACT+TGG | + | chr3_3:49766771-49766790 | Msa0456250:CDS | 30.0% | |
| GAAAATGACAATGTTGATCA+TGG | + | chr3_3:49766840-49766859 | Msa0456250:CDS | 30.0% | |
| ! | TGATGAATCAGTTGAGTTTT+TGG | + | chr3_3:49766869-49766888 | Msa0456250:CDS | 30.0% |
| TTTCTTTGCAGTATGCATAA+TGG | + | chr3_3:49766987-49767006 | Msa0456250:intron | 30.0% | |
| TTCTTTGCAGTATGCATAAT+GGG | + | chr3_3:49766988-49767007 | Msa0456250:intron | 30.0% | |
| TTGCACACATATATATATGC+AGG | + | chr3_3:49767088-49767107 | Msa0456250:intron | 30.0% | |
| CGAAACCAAAAAGTAACTTA+AGG | - | chr3_3:49767703-49767722 | None:intergenic | 30.0% | |
| !!! | GTTACTTTTTGGTTTCGTTT+TGG | + | chr3_3:49767436-49767455 | Msa0456250:intron | 30.0% |
| !!! | TGGTCCCTTAACTTATTTTT+TGG | + | chr3_3:49767485-49767504 | Msa0456250:intron | 30.0% |
| !!! | TGGTCCCTTAACTTATTTTT+TGG | + | chr3_3:49767485-49767504 | Msa0456250:intron | 30.0% |
| !!! | TGGTCCCTTAACTTATTTTT+TGG | + | chr3_3:49767485-49767504 | Msa0456250:intron | 30.0% |
| !!! | TGGTCCCTTAACTTATTTTT+TGG | + | chr3_3:49767485-49767504 | Msa0456250:intron | 30.0% |
| !!! | TCCCTTAACTTATTTTTTGG+AGG | + | chr3_3:49767488-49767507 | Msa0456250:intron | 30.0% |
| CCCTCCAAAAAATAAGTTAA+GGG | - | chr3_3:49767585-49767604 | None:intergenic | 30.0% | |
| !!! | CCCTTAACTTATTTTTTGGA+GGG | + | chr3_3:49767582-49767601 | Msa0456250:intron | 30.0% |
| TCCCTCCAAAAAATAAGTTA+AGG | - | chr3_3:49767586-49767605 | None:intergenic | 30.0% | |
| !!! | TGGTCCCTTAACTTATTTTT+TGG | - | chr3_3:49767485-49767504 | None:intergenic | 30.0% |
| !!! | TGGTCCCTTAACTTATTTTT+TGG | - | chr3_3:49767485-49767504 | None:intergenic | 30.0% |
| !!! | GTTACTTTTTGGTTTCGTTT+TGG | - | chr3_3:49767436-49767455 | None:intergenic | 30.0% |
| CGAAACCAAAAAGTAACTTA+AGG | + | chr3_3:49767703-49767722 | Msa0456250:intron | 30.0% | |
| TACTTATTTGCAAGAGAAAG+TGG | + | chr3_3:49767987-49768006 | Msa0456250:CDS | 30.0% | |
| !! | ATGATTTTGAAGAAACGGAT+GGG | - | chr3_3:49766242-49766261 | None:intergenic | 30.0% |
| !! | GAAGGATGATTTTGAAGAAA+CGG | - | chr3_3:49766247-49766266 | None:intergenic | 30.0% |
| TCCTTCAAACTAATCTTCAT+AGG | + | chr3_3:49766261-49766280 | Msa0456250:CDS | 30.0% | |
| !! | TCCTATGAAGATTAGTTTGA+AGG | - | chr3_3:49766265-49766284 | None:intergenic | 30.0% |
| TGTCTCTTTGTAAACTTTCT+TGG | - | chr3_3:49766576-49766595 | None:intergenic | 30.0% | |
| AGAAAGTTTACAAAGAGACA+TGG | + | chr3_3:49766576-49766595 | Msa0456250:CDS | 30.0% | |
| ! | ATTTTCCATTTAGTGTCATC+AGG | - | chr3_3:49766636-49766655 | None:intergenic | 30.0% |
| !! | TTGGTGGTGTTTGAATATAA+AGG | + | chr3_3:49766741-49766760 | Msa0456250:CDS | 30.0% |
| AAGTATGTGTACATCAAACT+TGG | - | chr3_3:49766772-49766791 | None:intergenic | 30.0% | |
| AAGTTTGATGTACACATACT+TGG | + | chr3_3:49766771-49766790 | Msa0456250:CDS | 30.0% | |
| GAAAATGACAATGTTGATCA+TGG | + | chr3_3:49766840-49766859 | Msa0456250:CDS | 30.0% | |
| ! | TGATGAATCAGTTGAGTTTT+TGG | + | chr3_3:49766869-49766888 | Msa0456250:CDS | 30.0% |
| TTTCTTTGCAGTATGCATAA+TGG | + | chr3_3:49766987-49767006 | Msa0456250:intron | 30.0% | |
| TTCTTTGCAGTATGCATAAT+GGG | + | chr3_3:49766988-49767007 | Msa0456250:intron | 30.0% | |
| TTGCACACATATATATATGC+AGG | + | chr3_3:49767088-49767107 | Msa0456250:intron | 30.0% | |
| CGAAACCAAAAAGTAACTTA+AGG | - | chr3_3:49767703-49767722 | None:intergenic | 30.0% | |
| !!! | GTTACTTTTTGGTTTCGTTT+TGG | + | chr3_3:49767436-49767455 | Msa0456250:intron | 30.0% |
| !!! | TGGTCCCTTAACTTATTTTT+TGG | + | chr3_3:49767485-49767504 | Msa0456250:intron | 30.0% |
| !!! | TGGTCCCTTAACTTATTTTT+TGG | + | chr3_3:49767485-49767504 | Msa0456250:intron | 30.0% |
| !!! | TGGTCCCTTAACTTATTTTT+TGG | + | chr3_3:49767485-49767504 | Msa0456250:intron | 30.0% |
| !!! | TGGTCCCTTAACTTATTTTT+TGG | + | chr3_3:49767485-49767504 | Msa0456250:intron | 30.0% |
| !!! | TCCCTTAACTTATTTTTTGG+AGG | + | chr3_3:49767488-49767507 | Msa0456250:intron | 30.0% |
| CCCTCCAAAAAATAAGTTAA+GGG | - | chr3_3:49767585-49767604 | None:intergenic | 30.0% | |
| !!! | CCCTTAACTTATTTTTTGGA+GGG | + | chr3_3:49767582-49767601 | Msa0456250:intron | 30.0% |
| TCCCTCCAAAAAATAAGTTA+AGG | - | chr3_3:49767586-49767605 | None:intergenic | 30.0% | |
| !!! | TGGTCCCTTAACTTATTTTT+TGG | - | chr3_3:49767485-49767504 | None:intergenic | 30.0% |
| !!! | TGGTCCCTTAACTTATTTTT+TGG | - | chr3_3:49767485-49767504 | None:intergenic | 30.0% |
| !!! | GTTACTTTTTGGTTTCGTTT+TGG | - | chr3_3:49767436-49767455 | None:intergenic | 30.0% |
| CGAAACCAAAAAGTAACTTA+AGG | + | chr3_3:49767703-49767722 | Msa0456250:intron | 30.0% | |
| TACTTATTTGCAAGAGAAAG+TGG | + | chr3_3:49767987-49768006 | Msa0456250:CDS | 30.0% | |
| !! | GATGATTTTGAAGAAACGGA+TGG | - | chr3_3:49766243-49766262 | None:intergenic | 35.0% |
| ! | ACCTTTTTCTTAGTGACCAA+AGG | + | chr3_3:49766525-49766544 | Msa0456250:intron | 35.0% |
| TCCTTTGGTCACTAAGAAAA+AGG | - | chr3_3:49766529-49766548 | None:intergenic | 35.0% | |
| TTTACAAAGAGACATGGAGT+TGG | + | chr3_3:49766582-49766601 | Msa0456250:CDS | 35.0% | |
| !! | ATGGTGAGATTTGGTTTGAA+AGG | + | chr3_3:49766673-49766692 | Msa0456250:CDS | 35.0% |
| !! | TGGTGAGATTTGGTTTGAAA+GGG | + | chr3_3:49766674-49766693 | Msa0456250:CDS | 35.0% |
| GAAAATTACTCTCTTGGACA+TGG | + | chr3_3:49766714-49766733 | Msa0456250:CDS | 35.0% | |
| !! | AATCTATTTCTACCGCATTC+TGG | - | chr3_3:49766797-49766816 | None:intergenic | 35.0% |
| !! | CAGTTGAGTTTTTGGATGAA+TGG | + | chr3_3:49766877-49766896 | Msa0456250:CDS | 35.0% |
| ! | TTTTGGATGAATGGCTGAAT+CGG | + | chr3_3:49766886-49766905 | Msa0456250:CDS | 35.0% |
| AAACCTCTAACTTTCTTGTG+TGG | - | chr3_3:49766951-49766970 | None:intergenic | 35.0% | |
| ACACAAGAAAGTTAGAGGTT+TGG | + | chr3_3:49766950-49766969 | Msa0456250:intron | 35.0% | |
| ! | AGAAAGTTAGAGGTTTGGTT+TGG | + | chr3_3:49766955-49766974 | Msa0456250:intron | 35.0% |
| TGTGTGCAATGTAAAACTCT+TGG | - | chr3_3:49767077-49767096 | None:intergenic | 35.0% | |
| TGTATGAGAACTGTGAAGAA+AGG | - | chr3_3:49767208-49767227 | None:intergenic | 35.0% | |
| !! | TGATTTGCTTCCAGATGATT+GGG | - | chr3_3:49767232-49767251 | None:intergenic | 35.0% |
| !! | TTGATTTGCTTCCAGATGAT+TGG | - | chr3_3:49767233-49767252 | None:intergenic | 35.0% |
| TGGTCCCTTAAGTTATTTGT+TGG | + | chr3_3:49767365-49767384 | Msa0456250:intron | 35.0% | |
| !!! | TGGTCCCTTAAGTTACTTTT+TGG | + | chr3_3:49767425-49767444 | Msa0456250:intron | 35.0% |
| !!! | TGGTCCCTTAAGTTACTTTT+TGG | - | chr3_3:49767425-49767444 | None:intergenic | 35.0% |
| TGGTCCCTTAAGTTATTTGT+TGG | - | chr3_3:49767365-49767384 | None:intergenic | 35.0% | |
| TAAAGGGGTTATTGAGAACA+AGG | + | chr3_3:49767866-49767885 | Msa0456250:intron | 35.0% | |
| CGTTCTTATGAGAGCAAAAA+TGG | + | chr3_3:49767942-49767961 | Msa0456250:CDS | 35.0% | |
| !! | GATGATTTTGAAGAAACGGA+TGG | - | chr3_3:49766243-49766262 | None:intergenic | 35.0% |
| ! | ACCTTTTTCTTAGTGACCAA+AGG | + | chr3_3:49766525-49766544 | Msa0456250:intron | 35.0% |
| TCCTTTGGTCACTAAGAAAA+AGG | - | chr3_3:49766529-49766548 | None:intergenic | 35.0% | |
| TTTACAAAGAGACATGGAGT+TGG | + | chr3_3:49766582-49766601 | Msa0456250:CDS | 35.0% | |
| !! | ATGGTGAGATTTGGTTTGAA+AGG | + | chr3_3:49766673-49766692 | Msa0456250:CDS | 35.0% |
| !! | TGGTGAGATTTGGTTTGAAA+GGG | + | chr3_3:49766674-49766693 | Msa0456250:CDS | 35.0% |
| GAAAATTACTCTCTTGGACA+TGG | + | chr3_3:49766714-49766733 | Msa0456250:CDS | 35.0% | |
| !! | AATCTATTTCTACCGCATTC+TGG | - | chr3_3:49766797-49766816 | None:intergenic | 35.0% |
| !! | CAGTTGAGTTTTTGGATGAA+TGG | + | chr3_3:49766877-49766896 | Msa0456250:CDS | 35.0% |
| ! | TTTTGGATGAATGGCTGAAT+CGG | + | chr3_3:49766886-49766905 | Msa0456250:CDS | 35.0% |
| AAACCTCTAACTTTCTTGTG+TGG | - | chr3_3:49766951-49766970 | None:intergenic | 35.0% | |
| ACACAAGAAAGTTAGAGGTT+TGG | + | chr3_3:49766950-49766969 | Msa0456250:intron | 35.0% | |
| ! | AGAAAGTTAGAGGTTTGGTT+TGG | + | chr3_3:49766955-49766974 | Msa0456250:intron | 35.0% |
| TGTGTGCAATGTAAAACTCT+TGG | - | chr3_3:49767077-49767096 | None:intergenic | 35.0% | |
| TGTATGAGAACTGTGAAGAA+AGG | - | chr3_3:49767208-49767227 | None:intergenic | 35.0% | |
| !! | TGATTTGCTTCCAGATGATT+GGG | - | chr3_3:49767232-49767251 | None:intergenic | 35.0% |
| !! | TTGATTTGCTTCCAGATGAT+TGG | - | chr3_3:49767233-49767252 | None:intergenic | 35.0% |
| TGGTCCCTTAAGTTATTTGT+TGG | + | chr3_3:49767365-49767384 | Msa0456250:intron | 35.0% | |
| !!! | TGGTCCCTTAAGTTACTTTT+TGG | + | chr3_3:49767425-49767444 | Msa0456250:intron | 35.0% |
| !!! | TGGTCCCTTAAGTTACTTTT+TGG | - | chr3_3:49767425-49767444 | None:intergenic | 35.0% |
| TGGTCCCTTAAGTTATTTGT+TGG | - | chr3_3:49767365-49767384 | None:intergenic | 35.0% | |
| TAAAGGGGTTATTGAGAACA+AGG | + | chr3_3:49767866-49767885 | Msa0456250:intron | 35.0% | |
| CGTTCTTATGAGAGCAAAAA+TGG | + | chr3_3:49767942-49767961 | Msa0456250:CDS | 35.0% | |
| CATAGAATTTCCTCTAGCCA+TGG | - | chr3_3:49766216-49766235 | None:intergenic | 40.0% | |
| ! | AGTTGGTCTATCAAATCCAG+TGG | + | chr3_3:49766599-49766618 | Msa0456250:CDS | 40.0% |
| AGACTCCTGATGACACTAAA+TGG | + | chr3_3:49766628-49766647 | Msa0456250:CDS | 40.0% | |
| !! | GGTGAGATTTGGTTTGAAAG+GGG | + | chr3_3:49766675-49766694 | Msa0456250:CDS | 40.0% |
| !! | AGATTTGGTTTGAAAGGGGT+TGG | + | chr3_3:49766679-49766698 | Msa0456250:CDS | 40.0% |
| TTCATCAATGAATCGGCCAA+AGG | + | chr3_3:49767138-49767157 | Msa0456250:CDS | 40.0% | |
| TGTGAAGAAAGGATTGCATG+AGG | - | chr3_3:49767197-49767216 | None:intergenic | 40.0% | |
| TCATCTGGAAGCAAATCAAC+TGG | + | chr3_3:49767234-49767253 | Msa0456250:CDS | 40.0% | |
| AGCAAATCAACTGGTAGAAG+AGG | + | chr3_3:49767243-49767262 | Msa0456250:intron | 40.0% | |
| AAGAATGTGATGCTGCTGAT+TGG | + | chr3_3:49767891-49767910 | Msa0456250:CDS | 40.0% | |
| ! | AGAATGTGATGCTGCTGATT+GGG | + | chr3_3:49767892-49767911 | Msa0456250:CDS | 40.0% |
| ! | TGCTGATTGGGAAAAGATCA+TGG | + | chr3_3:49767904-49767923 | Msa0456250:CDS | 40.0% |
| !! | AGAGAAAGTGGACTGAAATC+AGG | + | chr3_3:49767999-49768018 | Msa0456250:CDS | 40.0% |
| CATAGAATTTCCTCTAGCCA+TGG | - | chr3_3:49766216-49766235 | None:intergenic | 40.0% | |
| ! | AGTTGGTCTATCAAATCCAG+TGG | + | chr3_3:49766599-49766618 | Msa0456250:CDS | 40.0% |
| AGACTCCTGATGACACTAAA+TGG | + | chr3_3:49766628-49766647 | Msa0456250:CDS | 40.0% | |
| !! | GGTGAGATTTGGTTTGAAAG+GGG | + | chr3_3:49766675-49766694 | Msa0456250:CDS | 40.0% |
| !! | AGATTTGGTTTGAAAGGGGT+TGG | + | chr3_3:49766679-49766698 | Msa0456250:CDS | 40.0% |
| TTCATCAATGAATCGGCCAA+AGG | + | chr3_3:49767138-49767157 | Msa0456250:CDS | 40.0% | |
| TGTGAAGAAAGGATTGCATG+AGG | - | chr3_3:49767197-49767216 | None:intergenic | 40.0% | |
| TCATCTGGAAGCAAATCAAC+TGG | + | chr3_3:49767234-49767253 | Msa0456250:CDS | 40.0% | |
| AGCAAATCAACTGGTAGAAG+AGG | + | chr3_3:49767243-49767262 | Msa0456250:intron | 40.0% | |
| AAGAATGTGATGCTGCTGAT+TGG | + | chr3_3:49767891-49767910 | Msa0456250:CDS | 40.0% | |
| ! | AGAATGTGATGCTGCTGATT+GGG | + | chr3_3:49767892-49767911 | Msa0456250:CDS | 40.0% |
| ! | TGCTGATTGGGAAAAGATCA+TGG | + | chr3_3:49767904-49767923 | Msa0456250:CDS | 40.0% |
| !! | AGAGAAAGTGGACTGAAATC+AGG | + | chr3_3:49767999-49768018 | Msa0456250:CDS | 40.0% |
| TCAGGAGTCTTTATCACCAC+TGG | - | chr3_3:49766618-49766637 | None:intergenic | 45.0% | |
| ACACATACTTGGCCAGAATG+CGG | + | chr3_3:49766782-49766801 | Msa0456250:CDS | 45.0% | |
| TGAATGGCTGAATCGGAAGA+AGG | + | chr3_3:49766893-49766912 | Msa0456250:CDS | 45.0% | |
| TGTGGTCGAGGAGAAACAAA+AGG | - | chr3_3:49766933-49766952 | None:intergenic | 45.0% | |
| CTAACTTTCTTGTGTGGTCG+AGG | - | chr3_3:49766945-49766964 | None:intergenic | 45.0% | |
| CGACCACACAAGAAAGTTAG+AGG | + | chr3_3:49766945-49766964 | Msa0456250:CDS | 45.0% | |
| ! | TCCTGAGCTCTAACATCCTT+TGG | - | chr3_3:49767157-49767176 | None:intergenic | 45.0% |
| TCTCATACAGCCCAATCATC+TGG | + | chr3_3:49767219-49767238 | Msa0456250:CDS | 45.0% | |
| TCAGGAGTCTTTATCACCAC+TGG | - | chr3_3:49766618-49766637 | None:intergenic | 45.0% | |
| ACACATACTTGGCCAGAATG+CGG | + | chr3_3:49766782-49766801 | Msa0456250:CDS | 45.0% | |
| TGAATGGCTGAATCGGAAGA+AGG | + | chr3_3:49766893-49766912 | Msa0456250:CDS | 45.0% | |
| TGTGGTCGAGGAGAAACAAA+AGG | - | chr3_3:49766933-49766952 | None:intergenic | 45.0% | |
| CTAACTTTCTTGTGTGGTCG+AGG | - | chr3_3:49766945-49766964 | None:intergenic | 45.0% | |
| CGACCACACAAGAAAGTTAG+AGG | + | chr3_3:49766945-49766964 | Msa0456250:CDS | 45.0% | |
| ! | TCCTGAGCTCTAACATCCTT+TGG | - | chr3_3:49767157-49767176 | None:intergenic | 45.0% |
| TCTCATACAGCCCAATCATC+TGG | + | chr3_3:49767219-49767238 | Msa0456250:CDS | 45.0% | |
| !! | ATAAATCATATTAATTTATA+AGG | - | chr3_3:49767808-49767827 | None:intergenic | 5.0% |
| !! | ATAAATCATATTAATTTATA+AGG | - | chr3_3:49767808-49767827 | None:intergenic | 5.0% |
| GCCAAAGGATGTTAGAGCTC+AGG | + | chr3_3:49767153-49767172 | Msa0456250:CDS | 50.0% | |
| TGCAAATAAGTACCAGCCCG+CGG | - | chr3_3:49767979-49767998 | None:intergenic | 50.0% | |
| GCCAAAGGATGTTAGAGCTC+AGG | + | chr3_3:49767153-49767172 | Msa0456250:CDS | 50.0% | |
| TGCAAATAAGTACCAGCCCG+CGG | - | chr3_3:49767979-49767998 | None:intergenic | 50.0% | |
| CTCTCTTGGACATGGCTGCT+TGG | + | chr3_3:49766722-49766741 | Msa0456250:CDS | 55.0% | |
| TCTTGGACATGGCTGCTTGG+TGG | + | chr3_3:49766725-49766744 | Msa0456250:CDS | 55.0% | |
| ATAAGTACCAGCCCGCGGAA+AGG | - | chr3_3:49767974-49767993 | None:intergenic | 55.0% | |
| CTCTCTTGGACATGGCTGCT+TGG | + | chr3_3:49766722-49766741 | Msa0456250:CDS | 55.0% | |
| TCTTGGACATGGCTGCTTGG+TGG | + | chr3_3:49766725-49766744 | Msa0456250:CDS | 55.0% | |
| ATAAGTACCAGCCCGCGGAA+AGG | - | chr3_3:49767974-49767993 | None:intergenic | 55.0% | |
| AAATGGCCGTCGCCTTTCCG+CGG | + | chr3_3:49767959-49767978 | Msa0456250:CDS | 60.0% | |
| AAATGGCCGTCGCCTTTCCG+CGG | + | chr3_3:49767959-49767978 | Msa0456250:CDS | 60.0% | |
| AATGGCCGTCGCCTTTCCGC+GGG | + | chr3_3:49767960-49767979 | Msa0456250:CDS | 65.0% | |
| AATGGCCGTCGCCTTTCCGC+GGG | + | chr3_3:49767960-49767979 | Msa0456250:CDS | 65.0% | |
| ACCAGCCCGCGGAAAGGCGA+CGG | - | chr3_3:49767968-49767987 | None:intergenic | 70.0% | |
| ACCAGCCCGCGGAAAGGCGA+CGG | - | chr3_3:49767968-49767987 | None:intergenic | 70.0% | |
| ! | GCCGTCGCCTTTCCGCGGGC+TGG | + | chr3_3:49767964-49767983 | Msa0456250:CDS | 80.0% |
| ! | GCCGTCGCCTTTCCGCGGGC+TGG | + | chr3_3:49767964-49767983 | Msa0456250:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 49766209 | 49768085 | 49766209 | ID=Msa0456250;Name=Msa0456250 |
| chr3_3 | mRNA | 49766209 | 49768085 | 49766209 | ID=Msa0456250-mRNA-1;Parent=Msa0456250;Name=Msa0456250-mRNA-1;_AED=0.03;_eAED=0.03;_QI=6|0.33|0.25|1|1|1|4|0|271 |
| chr3_3 | exon | 49766209 | 49766286 | 49766209 | ID=Msa0456250-mRNA-1:exon:9417;Parent=Msa0456250-mRNA-1 |
| chr3_3 | exon | 49766567 | 49766966 | 49766567 | ID=Msa0456250-mRNA-1:exon:9418;Parent=Msa0456250-mRNA-1 |
| chr3_3 | exon | 49767110 | 49767255 | 49767110 | ID=Msa0456250-mRNA-1:exon:9419;Parent=Msa0456250-mRNA-1 |
| chr3_3 | exon | 49767888 | 49768085 | 49767888 | ID=Msa0456250-mRNA-1:exon:9420;Parent=Msa0456250-mRNA-1 |
| chr3_3 | five_prime_UTR | 49766209 | 49766214 | 49766209 | ID=Msa0456250-mRNA-1:five_prime_utr;Parent=Msa0456250-mRNA-1 |
| chr3_3 | CDS | 49766215 | 49766286 | 49766215 | ID=Msa0456250-mRNA-1:cds;Parent=Msa0456250-mRNA-1 |
| chr3_3 | CDS | 49766567 | 49766966 | 49766567 | ID=Msa0456250-mRNA-1:cds;Parent=Msa0456250-mRNA-1 |
| chr3_3 | CDS | 49767110 | 49767255 | 49767110 | ID=Msa0456250-mRNA-1:cds;Parent=Msa0456250-mRNA-1 |
| chr3_3 | CDS | 49767888 | 49768085 | 49767888 | ID=Msa0456250-mRNA-1:cds;Parent=Msa0456250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
