AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0456330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0456330 MtrunA17_Chr3g0103281 98.769 325 3 1 1 324 1 325 0.0 677
Msa0456330 MtrunA17_Chr6g0452271 56.000 175 72 1 1 175 1 170 1.29e-65 209
Msa0456330 MtrunA17_Chr4g0048511 70.543 129 37 1 1 128 1 129 9.93e-65 208
Msa0456330 MtrunA17_Chr3g0115821 52.459 183 75 1 1 171 1 183 1.85e-63 204
Msa0456330 MtrunA17_Chr2g0281071 68.992 129 39 1 1 128 1 129 2.18e-63 204
Msa0456330 MtrunA17_Chr7g0217741 52.406 187 85 2 1 187 1 183 6.12e-62 199
Msa0456330 MtrunA17_Chr6g0453471 59.211 152 62 0 1 152 1 152 6.74e-62 201
Msa0456330 MtrunA17_Chr4g0042671 68.750 128 40 0 1 128 1 128 1.29e-60 199
Msa0456330 MtrunA17_Chr5g0410961 51.562 192 85 5 1 186 1 190 1.46e-60 197
Msa0456330 MtrunA17_Chr2g0323411 65.672 134 45 1 1 133 1 134 1.90e-60 196
Msa0456330 MtrunA17_Chr4g0039971 61.111 144 53 1 1 141 2 145 2.87e-60 196
Msa0456330 MtrunA17_Chr4g0037141 57.432 148 59 1 1 148 1 144 1.61e-59 192
Msa0456330 MtrunA17_Chr3g0131121 56.376 149 63 1 1 149 1 147 3.00e-58 189
Msa0456330 MtrunA17_Chr4g0057031 63.846 130 47 0 1 130 1 130 4.02e-58 188
Msa0456330 MtrunA17_Chr5g0434571 59.864 147 59 0 1 147 37 183 4.56e-58 191
Msa0456330 MtrunA17_Chr7g0228891 62.595 131 49 0 1 131 1 131 6.73e-58 187
Msa0456330 MtrunA17_Chr7g0270891 58.442 154 61 1 1 151 1 154 1.05e-57 190
Msa0456330 MtrunA17_Chr3g0110351 61.871 139 53 0 1 139 1 139 2.11e-57 187
Msa0456330 MtrunA17_Chr1g0193371 64.394 132 47 0 1 132 1 132 4.32e-57 189
Msa0456330 MtrunA17_Chr1g0193801 64.394 132 47 0 1 132 1 132 1.39e-56 188
Msa0456330 MtrunA17_Chr4g0058631 63.077 130 48 0 1 130 1 130 1.89e-55 184
Msa0456330 MtrunA17_Chr3g0117091 63.566 129 47 0 1 129 1 129 5.94e-55 182
Msa0456330 MtrunA17_Chr4g0028311 64.062 128 45 1 1 127 1 128 1.78e-54 181
Msa0456330 MtrunA17_Chr8g0385321 59.091 132 54 0 1 132 1 132 1.81e-54 180
Msa0456330 MtrunA17_Chr2g0309911 62.400 125 47 0 6 130 5 129 4.99e-54 179
Msa0456330 MtrunA17_Chr1g0203411 65.517 116 40 0 1 116 1 116 5.45e-54 178
Msa0456330 MtrunA17_Chr1g0152011 68.067 119 37 1 1 118 1 119 5.75e-54 179
Msa0456330 MtrunA17_Chr5g0395281 60.938 128 50 0 1 128 1 128 7.61e-54 178
Msa0456330 MtrunA17_Chr1g0151941 57.718 149 57 3 1 147 1 145 8.57e-54 176
Msa0456330 MtrunA17_Chr7g0271241 65.385 130 45 0 1 130 1 130 2.02e-53 179
Msa0456330 MtrunA17_Chr7g0264641 65.000 120 41 1 1 119 1 120 2.96e-53 176
Msa0456330 MtrunA17_Chr1g0211161 61.417 127 49 0 3 129 4 130 3.00e-53 174
Msa0456330 MtrunA17_Chr5g0435101 60.800 125 49 0 3 127 2 126 3.87e-53 173
Msa0456330 MtrunA17_Chr5g0400821 66.387 119 39 1 1 118 1 119 4.52e-53 176
Msa0456330 MtrunA17_Chr3g0135311 65.546 119 40 1 1 118 1 119 5.78e-53 177
Msa0456330 MtrunA17_Chr1g0187761 66.379 116 39 0 1 116 1 116 1.16e-52 174
Msa0456330 MtrunA17_Chr1g0167661 65.517 116 40 0 1 116 1 116 2.09e-52 173
Msa0456330 MtrunA17_Chr8g0349261 55.152 165 62 6 1 153 1 165 2.66e-52 174
Msa0456330 MtrunA17_Chr1g0167691 64.655 116 41 0 1 116 1 116 3.03e-52 172
Msa0456330 MtrunA17_Chr3g0121241 61.600 125 48 0 5 129 35 159 6.65e-52 173
Msa0456330 MtrunA17_Chr1g0194951 56.250 144 57 1 1 144 1 138 8.88e-52 175
Msa0456330 MtrunA17_Chr4g0060721 64.655 116 41 0 1 116 2 117 4.87e-51 172
Msa0456330 MtrunA17_Chr2g0323351 61.207 116 45 0 1 116 1 116 8.06e-51 169
Msa0456330 MtrunA17_Chr4g0068061 62.931 116 43 0 1 116 1 116 9.71e-51 171
Msa0456330 MtrunA17_Chr2g0327351 66.667 111 36 1 1 110 1 111 1.30e-50 170
Msa0456330 MtrunA17_Chr4g0070641 61.345 119 46 0 1 119 1 119 1.57e-50 165
Msa0456330 MtrunA17_Chr4g0070611 61.345 119 46 0 1 119 1 119 2.75e-50 169
Msa0456330 MtrunA17_Chr5g0417821 60.504 119 47 0 12 130 7 125 2.90e-50 168
Msa0456330 MtrunA17_Chr7g0217221 62.069 116 44 0 1 116 1 116 6.00e-50 167
Msa0456330 MtrunA17_Chr4g0054391 68.182 110 34 1 1 109 1 110 7.44e-50 167
Msa0456330 MtrunA17_Chr7g0275911 61.207 116 45 0 1 116 1 116 4.02e-49 164
Msa0456330 MtrunA17_Chr7g0254411 60.000 125 48 1 1 123 1 125 4.90e-49 167
Msa0456330 MtrunA17_Chr3g0092401 62.931 116 43 0 1 116 2 117 5.32e-49 166
Msa0456330 MtrunA17_Chr7g0274581 62.069 116 44 0 1 116 1 116 1.01e-48 162
Msa0456330 MtrunA17_Chr7g0261281 62.069 116 44 0 1 116 1 116 2.15e-48 163
Msa0456330 MtrunA17_Chr2g0311221 64.220 109 39 0 2 110 4 112 4.52e-48 164
Msa0456330 MtrunA17_Chr2g0330041 57.576 132 56 0 1 132 1 132 7.44e-48 165
Msa0456330 MtrunA17_Chr6g0453211 62.727 110 41 0 1 110 1 110 1.23e-47 162
Msa0456330 MtrunA17_Chr8g0387421 60.345 116 46 0 1 116 1 116 1.79e-47 162
Msa0456330 MtrunA17_Chr8g0342521 60.163 123 49 0 1 123 1 123 2.73e-47 162
Msa0456330 MtrunA17_Chr4g0022901 59.483 116 46 1 1 115 1 116 2.91e-47 160
Msa0456330 MtrunA17_Chr8g0342541 60.976 123 48 0 1 123 1 123 4.84e-47 162
Msa0456330 MtrunA17_Chr8g0346561 58.621 116 48 0 1 116 1 116 7.16e-47 160
Msa0456330 MtrunA17_Chr4g0022931 58.120 117 48 1 1 116 1 117 7.76e-47 159
Msa0456330 MtrunA17_Chr4g0022911 57.759 116 48 1 1 115 1 116 1.99e-46 159
Msa0456330 MtrunA17_Chr4g0044421 58.400 125 51 1 3 126 2 126 3.17e-46 155
Msa0456330 MtrunA17_Chr4g0072751 63.063 111 40 1 1 110 1 111 3.23e-46 160
Msa0456330 MtrunA17_Chr4g0022891 58.407 113 47 0 1 113 1 113 3.47e-45 154
Msa0456330 MtrunA17_Chr7g0269831 62.069 116 44 0 1 116 1 116 4.35e-45 157
Msa0456330 MtrunA17_Chr6g0487491 60.484 124 40 2 1 115 1 124 4.78e-45 154
Msa0456330 MtrunA17_Chr5g0397231 60.000 110 44 0 1 110 1 110 1.36e-44 155
Msa0456330 MtrunA17_Chr8g0342481 62.393 117 43 1 1 116 1 117 1.42e-44 157
Msa0456330 MtrunA17_Chr4g0055981 56.410 117 51 0 9 125 52 168 1.44e-43 149
Msa0456330 MtrunA17_Chr4g0032401 59.459 111 45 0 12 122 17 127 1.52e-43 152
Msa0456330 MtrunA17_Chr2g0328771 58.333 108 45 0 12 119 20 127 6.19e-43 150
Msa0456330 MtrunA17_Chr3g0088461 62.037 108 41 0 9 116 19 126 2.14e-42 149
Msa0456330 MtrunA17_Chr4g0022881 55.263 114 51 0 1 114 1 114 2.65e-42 146
Msa0456330 MtrunA17_Chr6g0470971 59.633 109 44 0 7 115 9 117 9.65e-42 146
Msa0456330 MtrunA17_Chr8g0343831 59.048 105 43 0 12 116 8 112 1.93e-41 144
Msa0456330 MtrunA17_Chr1g0203441 50.365 137 67 1 13 149 14 149 2.29e-41 145
Msa0456330 MtrunA17_Chr7g0247131 62.637 91 34 0 44 134 10 100 3.50e-39 139
Msa0456330 MtrunA17_Chr3g0099131 58.095 105 44 0 11 115 40 144 5.66e-39 144
Msa0456330 MtrunA17_Chr1g0209661 52.174 115 55 0 8 122 23 137 9.22e-39 139
Msa0456330 MtrunA17_Chr7g0240821 58.491 106 44 0 17 122 6 111 3.71e-38 135
Msa0456330 MtrunA17_Chr5g0440781 50.435 115 55 2 11 124 11 124 2.01e-37 132
Msa0456330 MtrunA17_Chr1g0186061 54.545 110 50 0 6 115 14 123 3.87e-37 133
Msa0456330 MtrunA17_Chr5g0434911 53.636 110 51 0 7 116 16 125 4.06e-37 134
Msa0456330 MtrunA17_Chr5g0434831 57.143 105 45 0 12 116 7 111 4.58e-37 131
Msa0456330 MtrunA17_Chr7g0220341 57.944 107 43 1 12 116 25 131 6.36e-37 133
Msa0456330 MtrunA17_Chr5g0440761 50.877 114 54 2 11 123 11 123 7.87e-37 133
Msa0456330 MtrunA17_Chr4g0042611 63.636 88 32 0 1 88 1 88 7.88e-37 127
Msa0456330 MtrunA17_Chr3g0080861 53.982 113 51 1 12 123 37 149 9.06e-37 138
Msa0456330 MtrunA17_Chr5g0434931 55.238 105 47 0 12 116 35 139 1.04e-36 133
Msa0456330 MtrunA17_Chr5g0441141 50.435 115 55 2 11 124 11 124 1.13e-36 132
Msa0456330 MtrunA17_Chr1g0180391 54.717 106 48 0 11 116 18 123 1.30e-36 131
Msa0456330 MtrunA17_Chr7g0228231 53.774 106 49 0 11 116 13 118 2.12e-36 130
Msa0456330 MtrunA17_Chr2g0322521 56.731 104 45 0 12 115 29 132 2.21e-36 135
Msa0456330 MtrunA17_Chr3g0093811 65.217 92 32 0 44 135 14 105 2.68e-36 131
Msa0456330 MtrunA17_Chr2g0294811 59.783 92 37 0 1 92 1 92 4.23e-36 126
Msa0456330 MtrunA17_Chr6g0450101 50.847 118 56 1 1 116 1 118 1.43e-35 128
Msa0456330 MtrunA17_Chr1g0194291 48.800 125 63 1 12 136 21 144 2.40e-35 129
Msa0456330 MtrunA17_Chr8g0354661 53.846 104 48 0 12 115 37 140 2.41e-35 134
Msa0456330 MtrunA17_Chr2g0327821 52.336 107 51 0 9 115 3 109 3.53e-35 127
Msa0456330 MtrunA17_Chr1g0168661 52.727 110 52 0 6 115 15 124 3.57e-35 128
Msa0456330 MtrunA17_Chr1g0194301 50.450 111 55 0 12 122 33 143 4.47e-35 129
Msa0456330 MtrunA17_Chr8g0360111 55.446 101 45 0 12 112 25 125 6.06e-35 127
Msa0456330 MtrunA17_Chr5g0434841 54.286 105 48 0 12 116 20 124 6.24e-35 129
Msa0456330 MtrunA17_Chr7g0228991 54.286 105 48 0 12 116 29 133 2.61e-34 126
Msa0456330 MtrunA17_Chr5g0401731 48.361 122 61 2 8 129 10 129 1.79e-33 125
Msa0456330 MtrunA17_Chr4g0030881 50.909 110 47 1 13 115 8 117 1.84e-33 124
Msa0456330 MtrunA17_Chr5g0441131 49.565 115 56 2 11 124 8 121 2.50e-33 121
Msa0456330 MtrunA17_Chr8g0342511 62.069 87 33 0 1 87 1 87 5.66e-33 117
Msa0456330 MtrunA17_Chr1g0154031 51.923 104 50 0 12 115 76 179 8.36e-33 125
Msa0456330 MtrunA17_Chr4g0068921 47.619 126 65 1 11 136 23 147 8.91e-33 120
Msa0456330 MtrunA17_Chr2g0293911 49.593 123 61 1 11 133 23 144 1.15e-32 123
Msa0456330 MtrunA17_Chr2g0323321 55.435 92 40 1 1 92 1 91 1.34e-32 117
Msa0456330 MtrunA17_Chr8g0342531 61.905 84 32 0 6 89 6 89 6.42e-32 117
Msa0456330 MtrunA17_Chr4g0008551 42.254 142 77 2 14 155 38 174 1.21e-31 121
Msa0456330 MtrunA17_Chr3g0133601 44.444 144 59 4 14 143 37 173 1.25e-31 118
Msa0456330 MtrunA17_Chr8g0342461 58.889 90 36 1 1 89 1 90 1.54e-31 115
Msa0456330 MtrunA17_Chr6g0454921 40.132 152 86 3 8 159 10 156 2.79e-31 117
Msa0456330 MtrunA17_Chr8g0342471 58.889 90 36 1 1 89 1 90 4.77e-31 114
Msa0456330 MtrunA17_Chr1g0192411 46.281 121 64 1 12 131 12 132 5.49e-31 120
Msa0456330 MtrunA17_Chr4g0053431 50.962 104 50 1 14 117 5 107 9.80e-31 117
Msa0456330 MtrunA17_Chr8g0334881 48.148 108 55 1 8 114 6 113 3.12e-30 117
Msa0456330 MtrunA17_Chr5g0395221 56.818 88 38 0 1 88 1 88 3.50e-30 110
Msa0456330 MtrunA17_Chr3g0099141 57.143 84 36 0 11 94 39 122 2.62e-29 109
Msa0456330 MtrunA17_Chr4g0013361 48.148 108 55 1 8 114 6 113 4.82e-29 113
Msa0456330 MtrunA17_Chr4g0042501 48.039 102 52 1 14 115 105 205 3.00e-27 110
Msa0456330 MtrunA17_Chr5g0429661 47.115 104 54 1 14 117 122 224 5.09e-26 106
Msa0456330 MtrunA17_Chr5g0417621 46.078 102 54 1 14 115 134 234 6.43e-26 107
Msa0456330 MtrunA17_Chr3g0117511 44.545 110 60 1 8 117 177 285 8.06e-26 107
Msa0456330 MtrunA17_Chr7g0238631 48.544 103 52 1 14 116 113 214 1.13e-25 107
Msa0456330 MtrunA17_Chr4g0058991 45.794 107 55 2 12 117 207 311 1.65e-25 106
Msa0456330 MtrunA17_Chr6g0480581 45.545 101 54 1 14 114 4 103 1.87e-25 102
Msa0456330 MtrunA17_Chr5g0437321 37.037 162 94 5 10 166 16 174 2.60e-25 102
Msa0456330 MtrunA17_Chr5g0425591 50.000 86 42 1 11 95 8 93 1.07e-24 95.9
Msa0456330 MtrunA17_Chr7g0229101 61.429 70 27 0 44 113 4 73 1.80e-24 98.6
Msa0456330 MtrunA17_Chr5g0434901 61.765 68 26 0 46 113 7 74 2.69e-24 95.5
Msa0456330 MtrunA17_Chr7g0254261 46.078 102 54 1 14 115 89 189 5.77e-24 100
Msa0456330 MtrunA17_Chr7g0229131 57.534 73 31 0 44 116 4 76 7.28e-24 95.9
Msa0456330 MtrunA17_Chr3g0125801 47.573 103 51 2 14 115 16 116 3.08e-23 97.4
Msa0456330 MtrunA17_Chr6g0460661 44.898 98 51 2 14 110 16 111 6.51e-23 93.2
Msa0456330 MtrunA17_Chr7g0238651 35.252 139 82 3 10 140 3 141 8.65e-23 97.4
Msa0456330 MtrunA17_Chr7g0228531 44.248 113 56 3 11 118 217 327 1.36e-22 97.4
Msa0456330 MtrunA17_Chr3g0139671 39.806 103 61 1 14 116 85 186 1.50e-21 95.5
Msa0456330 MtrunA17_Chr6g0460671 31.841 201 108 5 14 207 99 277 3.07e-21 92.8
Msa0456330 MtrunA17_Chr1g0157731 32.680 153 83 3 14 159 91 230 3.57e-21 94.4
Msa0456330 MtrunA17_Chr6g0453751 47.312 93 40 3 12 95 20 112 4.16e-21 87.4
Msa0456330 MtrunA17_Chr5g0397841 44.000 100 54 2 10 109 107 204 3.03e-20 90.9
Msa0456330 MtrunA17_Chr7g0228481 42.478 113 58 3 11 118 217 327 3.82e-20 90.5
Msa0456330 MtrunA17_Chr8g0362231 33.333 180 109 4 17 187 25 202 5.08e-19 87.4
Msa0456330 MtrunA17_Chr5g0416341 42.424 99 56 1 17 115 29 126 3.15e-18 85.1
Msa0456330 MtrunA17_Chr7g0228401 41.860 86 49 1 25 110 290 374 7.43e-17 81.3
Msa0456330 MtrunA17_Chr1g0193901 48.276 87 43 2 12 96 11 97 3.83e-16 73.6
Msa0456330 MtrunA17_Chr1g0193891 48.276 87 43 2 12 96 11 97 3.83e-16 73.6
Msa0456330 MtrunA17_Chr1g0193871 48.276 87 43 2 12 96 11 97 3.83e-16 73.6
Msa0456330 MtrunA17_Chr1g0193881 48.276 87 43 2 12 96 11 97 3.83e-16 73.6
Msa0456330 MtrunA17_Chr1g0177901 47.619 63 33 0 48 110 27 89 5.35e-16 75.5
Msa0456330 MtrunA17_Chr7g0233061 35.780 109 64 3 11 116 177 282 6.15e-16 77.8
Msa0456330 MtrunA17_Chr5g0395231 62.745 51 19 0 78 128 5 55 3.75e-14 71.2
Msa0456330 MtrunA17_Chr4g0042621 75.000 40 10 0 89 128 15 54 1.64e-13 70.5
Msa0456330 MtrunA17_Chr5g0434871 65.116 43 15 0 74 116 2 44 2.09e-13 64.7
Msa0456330 MtrunA17_Chr3g0145551 61.538 39 15 0 91 129 1 39 2.61e-11 59.3
Msa0456330 MtrunA17_Chr5g0434891 68.421 38 12 0 78 115 2 39 4.55e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0456330 AT5G56110.1 55.891 331 128 5 1 324 1 320 7.46e-116 338
Msa0456330 AT4G21440.1 65.957 141 47 1 1 141 1 140 2.74e-64 207
Msa0456330 AT4G05100.1 70.543 129 37 1 1 128 1 129 7.97e-64 205
Msa0456330 AT4G28110.1 69.531 128 39 0 1 128 1 128 8.55e-64 203
Msa0456330 AT3G28470.1 71.324 136 39 0 1 136 1 136 7.59e-62 199
Msa0456330 AT5G15310.4 56.395 172 66 2 1 163 1 172 3.33e-61 196
Msa0456330 AT4G17785.2 63.504 137 49 1 1 136 1 137 3.63e-61 199
Msa0456330 AT4G17785.1 63.504 137 49 1 1 136 1 137 3.89e-61 199
Msa0456330 AT5G15310.2 56.395 172 66 2 1 163 1 172 4.23e-61 197
Msa0456330 AT5G15310.1 38.199 322 175 7 1 306 1 314 4.55e-61 198
Msa0456330 AT3G01140.2 54.651 172 69 1 1 163 1 172 6.19e-61 198
Msa0456330 AT1G35515.1 58.599 157 61 1 1 157 1 153 8.39e-61 193
Msa0456330 AT5G16770.4 65.625 128 44 0 1 128 1 128 9.29e-61 197
Msa0456330 AT5G16770.3 65.625 128 44 0 1 128 1 128 9.29e-61 197
Msa0456330 AT1G34670.1 51.852 189 89 1 1 187 1 189 9.72e-61 198
Msa0456330 AT3G02940.2 65.625 128 44 0 1 128 1 128 1.19e-60 196
Msa0456330 AT5G16770.1 65.625 128 44 0 1 128 1 128 1.79e-60 197
Msa0456330 AT5G16770.2 65.625 128 44 0 1 128 1 128 1.79e-60 197
Msa0456330 AT3G02940.1 65.625 128 44 0 1 128 1 128 2.00e-60 196
Msa0456330 AT3G02940.3 65.625 128 44 0 1 128 1 128 2.00e-60 196
Msa0456330 AT5G10280.1 59.574 141 57 0 1 141 1 141 2.33e-59 194
Msa0456330 AT4G34990.1 64.615 130 46 0 1 130 1 130 3.77e-59 191
Msa0456330 AT4G09460.1 58.333 144 60 0 1 144 1 144 5.72e-59 189
Msa0456330 AT3G61250.1 56.954 151 62 2 1 150 1 149 2.30e-58 190
Msa0456330 AT1G66230.1 63.704 135 49 0 1 135 1 135 2.39e-58 189
Msa0456330 AT3G01140.1 54.167 168 68 1 5 163 48 215 4.18e-58 192
Msa0456330 AT2G16720.1 63.780 127 46 0 1 127 1 127 5.13e-58 188
Msa0456330 AT4G12350.1 62.963 135 50 0 1 135 1 135 9.56e-58 188
Msa0456330 AT4G38620.1 61.240 129 50 0 1 129 1 129 2.75e-57 187
Msa0456330 AT5G14340.1 61.364 132 51 0 1 132 13 144 3.42e-57 186
Msa0456330 AT4G01680.3 63.768 138 46 1 1 138 1 134 4.97e-57 185
Msa0456330 AT5G54230.1 63.910 133 48 0 1 133 1 133 2.55e-56 185
Msa0456330 AT5G60890.1 59.690 129 52 0 1 129 1 129 2.61e-56 184
Msa0456330 AT5G65230.1 63.281 128 47 0 1 128 1 128 2.66e-56 185
Msa0456330 AT4G22680.1 59.441 143 58 0 1 143 1 143 3.30e-56 183
Msa0456330 AT1G22640.1 62.205 127 48 0 1 127 1 127 4.53e-56 183
Msa0456330 AT4G01680.1 63.768 138 46 1 1 138 1 134 5.10e-56 185
Msa0456330 AT1G57560.1 61.481 135 52 0 1 135 1 135 7.32e-56 184
Msa0456330 AT5G61420.2 62.308 130 49 0 1 130 1 130 1.09e-55 185
Msa0456330 AT1G57560.2 63.077 130 48 0 1 130 1 130 1.62e-55 182
Msa0456330 AT5G16600.1 63.846 130 47 0 1 130 1 130 1.74e-55 183
Msa0456330 AT5G07690.1 61.832 131 50 0 1 131 1 131 1.80e-55 184
Msa0456330 AT5G26660.1 63.566 129 47 0 1 129 1 129 4.77e-55 183
Msa0456330 AT1G09540.1 62.879 132 49 0 1 132 1 132 1.13e-54 182
Msa0456330 AT1G18570.1 59.542 131 52 1 1 130 1 131 5.04e-54 181
Msa0456330 AT5G07700.1 62.308 130 49 0 1 130 1 130 1.47e-53 179
Msa0456330 AT5G07700.2 62.308 130 49 0 1 130 1 130 1.47e-53 179
Msa0456330 AT2G31180.1 68.376 117 37 0 1 117 1 117 1.87e-53 176
Msa0456330 AT1G74080.1 58.140 129 54 0 1 129 1 129 4.18e-53 177
Msa0456330 AT2G47460.1 56.164 146 64 0 1 146 1 146 4.31e-53 179
Msa0456330 AT3G23250.1 65.517 116 40 0 1 116 1 116 4.97e-53 176
Msa0456330 AT4G01680.2 58.667 150 46 2 1 138 1 146 1.28e-52 177
Msa0456330 AT1G74430.1 58.594 128 53 0 1 128 1 128 1.97e-52 174
Msa0456330 AT1G18710.1 57.364 129 55 0 1 129 1 129 2.04e-52 174
Msa0456330 AT5G57620.1 65.546 119 40 1 1 118 1 119 3.84e-52 175
Msa0456330 AT1G79180.1 62.205 127 45 1 2 125 4 130 3.85e-52 174
Msa0456330 AT3G49690.1 66.667 117 38 1 1 116 1 117 1.00e-51 173
Msa0456330 AT3G13540.1 60.800 125 49 0 5 129 16 140 3.98e-51 170
Msa0456330 AT5G62470.2 65.517 116 40 0 1 116 1 116 5.12e-51 172
Msa0456330 AT1G16490.1 65.517 116 40 0 2 117 4 119 7.04e-51 170
Msa0456330 AT3G12720.1 61.983 121 46 0 6 126 16 136 9.28e-51 171
Msa0456330 AT1G74650.1 64.706 119 42 0 1 119 1 119 9.39e-51 171
Msa0456330 AT5G65790.1 64.957 117 40 1 1 116 1 117 1.45e-50 172
Msa0456330 AT5G62320.1 56.204 137 53 1 2 131 3 139 2.18e-50 168
Msa0456330 AT2G36890.1 54.248 153 49 2 1 152 1 133 2.49e-50 169
Msa0456330 AT1G06180.1 64.655 116 41 0 1 116 1 116 3.67e-50 167
Msa0456330 AT2G36890.2 54.248 153 49 2 1 152 42 174 5.35e-50 169
Msa0456330 AT5G23000.1 64.103 117 41 1 1 116 1 117 6.50e-50 169
Msa0456330 AT5G49330.1 63.793 116 42 0 1 116 1 116 6.83e-50 169
Msa0456330 AT3G47600.1 62.185 119 45 0 1 119 1 119 1.08e-49 169
Msa0456330 AT3G62610.1 62.712 118 44 0 1 118 1 118 1.20e-49 169
Msa0456330 AT4G37780.1 63.248 117 42 1 1 116 1 117 1.99e-49 167
Msa0456330 AT5G62470.1 65.517 116 39 1 1 116 1 115 3.73e-49 168
Msa0456330 AT3G28910.1 60.656 122 48 0 1 122 1 122 8.79e-49 166
Msa0456330 AT1G56160.1 62.069 116 44 0 2 117 4 119 2.16e-48 164
Msa0456330 AT1G08810.1 61.538 117 45 0 1 117 1 117 5.35e-48 162
Msa0456330 AT3G13890.2 63.793 116 42 0 1 116 1 116 8.77e-48 164
Msa0456330 AT3G12820.1 61.404 114 44 0 3 116 5 118 8.52e-47 158
Msa0456330 AT1G63910.1 60.345 116 46 0 1 116 1 116 2.51e-46 161
Msa0456330 AT1G79180.2 50.000 160 44 2 2 125 4 163 5.18e-46 159
Msa0456330 AT3G13890.1 59.200 125 42 1 1 116 1 125 1.03e-44 156
Msa0456330 AT5G12870.1 62.037 108 41 0 12 119 18 125 6.25e-44 152
Msa0456330 AT5G35550.1 57.407 108 46 0 9 116 11 118 3.61e-42 147
Msa0456330 AT3G27920.1 58.407 113 45 1 8 118 8 120 5.74e-42 145
Msa0456330 AT5G52600.1 54.264 129 50 1 9 128 9 137 4.07e-41 142
Msa0456330 AT5G40330.1 59.259 108 43 1 13 120 13 119 5.89e-41 142
Msa0456330 AT5G14750.1 59.615 104 42 0 13 116 17 120 1.14e-40 141
Msa0456330 AT3G08500.1 60.185 108 43 0 9 116 27 134 1.11e-39 142
Msa0456330 AT3G27810.1 40.437 183 95 3 12 186 20 196 1.89e-39 139
Msa0456330 AT5G55020.1 53.982 113 51 1 12 123 26 138 2.76e-38 142
Msa0456330 AT1G25340.1 51.304 115 56 0 13 127 19 133 4.28e-38 137
Msa0456330 AT2G32460.1 53.704 108 50 0 8 115 14 121 6.34e-38 141
Msa0456330 AT2G26960.1 52.212 113 53 1 9 121 17 128 7.12e-38 140
Msa0456330 AT2G32460.2 54.808 104 47 0 12 115 6 109 7.78e-38 140
Msa0456330 AT5G26660.2 67.778 90 29 0 40 129 9 98 8.44e-38 137
Msa0456330 AT5G40350.1 50.000 128 64 0 12 139 17 144 3.20e-37 132
Msa0456330 AT1G48000.1 47.552 143 69 3 12 149 32 173 3.86e-37 133
Msa0456330 AT5G06100.1 53.097 113 52 1 12 123 32 144 7.60e-37 137
Msa0456330 AT4G26930.1 48.760 121 61 1 12 131 19 139 1.04e-36 136
Msa0456330 AT5G52260.1 58.879 107 44 0 9 115 9 115 1.14e-36 133
Msa0456330 AT5G06100.5 55.769 104 46 0 12 115 32 135 2.48e-36 137
Msa0456330 AT5G06100.2 55.769 104 46 0 12 115 32 135 2.48e-36 137
Msa0456330 AT5G06100.3 55.769 104 46 0 12 115 32 135 2.48e-36 137
Msa0456330 AT5G06100.4 55.769 104 46 0 12 115 32 135 2.48e-36 137
Msa0456330 AT4G25560.1 58.252 103 43 0 13 115 11 113 3.34e-36 132
Msa0456330 AT3G48920.1 53.211 109 51 0 9 117 15 123 3.51e-36 131
Msa0456330 AT3G11440.2 53.846 104 48 0 12 115 41 144 6.37e-36 135
Msa0456330 AT2G47190.1 40.000 165 93 3 8 170 16 176 6.51e-36 131
Msa0456330 AT3G01530.1 51.376 109 53 0 8 116 21 129 1.36e-35 128
Msa0456330 AT1G68320.1 48.333 120 62 0 10 129 17 136 1.77e-35 130
Msa0456330 AT3G11440.3 53.846 104 48 0 12 115 41 144 2.13e-35 135
Msa0456330 AT3G11440.4 53.846 104 48 0 12 115 41 144 2.13e-35 135
Msa0456330 AT3G11440.1 53.846 104 48 0 12 115 41 144 2.13e-35 135
Msa0456330 AT4G13480.1 57.282 103 44 0 13 115 7 109 3.34e-35 129
Msa0456330 AT3G24310.1 56.311 103 45 0 13 115 19 121 5.79e-35 128
Msa0456330 AT3G30210.1 55.882 102 45 0 13 114 28 129 1.87e-34 127
Msa0456330 AT1G18960.1 51.261 119 55 2 17 135 13 128 3.36e-34 127
Msa0456330 AT1G66370.1 52.885 104 49 0 12 115 8 111 2.29e-33 123
Msa0456330 AT1G25340.2 48.696 115 54 1 13 127 19 128 3.00e-33 124
Msa0456330 AT3G06490.1 50.000 126 62 1 11 136 18 142 3.49e-33 125
Msa0456330 AT1G25340.3 48.696 115 54 1 13 127 19 128 3.89e-33 124
Msa0456330 AT1G66380.1 46.970 132 60 1 12 143 8 129 6.16e-33 119
Msa0456330 AT3G60460.1 51.376 109 52 1 7 114 6 114 7.55e-33 124
Msa0456330 AT5G59780.3 48.598 107 55 0 9 115 5 111 2.33e-32 120
Msa0456330 AT2G26950.1 46.018 113 60 1 9 121 13 124 2.47e-32 124
Msa0456330 AT5G49620.1 43.537 147 79 2 8 154 22 164 3.94e-32 122
Msa0456330 AT3G46130.1 51.456 103 50 0 13 115 10 112 5.05e-32 120
Msa0456330 AT3G53200.1 50.467 107 53 0 9 115 6 112 5.69e-32 119
Msa0456330 AT2G23290.1 52.727 110 50 2 8 117 8 115 3.81e-31 119
Msa0456330 AT5G35550.2 66.667 72 24 0 45 116 50 121 4.56e-31 118
Msa0456330 AT4G37260.1 51.923 104 49 1 14 117 13 115 5.08e-31 119
Msa0456330 AT1G66390.1 54.808 104 47 0 12 115 8 111 5.41e-31 117
Msa0456330 AT1G56650.1 54.808 104 47 0 12 115 8 111 8.45e-31 117
Msa0456330 AT5G67300.1 51.429 105 50 1 14 118 6 109 2.26e-30 117
Msa0456330 AT3G50060.1 52.294 109 50 2 10 118 3 109 2.82e-29 114
Msa0456330 AT5G14750.3 66.667 69 23 0 48 116 18 86 6.73e-29 109
Msa0456330 AT3G27810.2 38.667 150 78 3 45 186 4 147 8.43e-29 109
Msa0456330 AT3G47600.2 64.000 75 27 0 45 119 39 113 1.65e-28 112
Msa0456330 AT5G49620.2 39.752 161 79 3 8 154 22 178 1.80e-28 112
Msa0456330 AT2G39880.1 43.262 141 70 3 14 152 50 182 1.82e-28 113
Msa0456330 AT3G09230.1 47.222 108 55 2 9 116 51 156 1.85e-28 114
Msa0456330 AT1G69560.2 46.789 109 55 2 9 116 118 224 9.62e-28 111
Msa0456330 AT1G69560.1 46.789 109 55 2 9 116 102 208 1.06e-27 110
Msa0456330 AT3G12820.2 66.667 69 23 0 48 116 2 70 1.29e-27 107
Msa0456330 AT1G71030.2 58.025 81 34 0 51 131 5 85 1.47e-27 106
Msa0456330 AT1G71030.1 55.682 88 38 1 44 131 13 99 1.80e-27 106
Msa0456330 AT5G40350.2 50.515 97 48 0 43 139 3 99 3.46e-27 105
Msa0456330 AT3G55730.1 48.113 106 54 1 14 119 56 160 4.36e-27 110
Msa0456330 AT1G22640.3 62.319 69 26 0 59 127 2 70 1.16e-26 104
Msa0456330 AT5G40360.1 44.860 107 58 1 8 114 152 257 1.29e-26 108
Msa0456330 AT5G58850.1 46.729 107 56 1 11 117 102 207 1.59e-26 108
Msa0456330 AT3G27785.1 46.847 111 56 2 8 117 183 291 1.89e-26 108
Msa0456330 AT5G11050.1 44.860 107 58 1 11 117 102 207 6.78e-26 107
Msa0456330 AT5G17800.1 48.039 102 52 1 14 115 93 193 1.44e-25 104
Msa0456330 AT1G26780.1 46.602 103 52 2 14 115 98 198 2.10e-25 103
Msa0456330 AT1G17950.1 34.286 210 112 6 14 221 5 190 2.70e-25 102
Msa0456330 AT1G26780.2 46.602 103 52 2 14 115 98 198 3.25e-25 104
Msa0456330 AT5G59780.2 52.809 89 37 1 27 115 7 90 4.26e-25 100
Msa0456330 AT4G18770.1 41.818 110 63 1 8 117 211 319 1.38e-24 103
Msa0456330 AT3G53200.2 60.563 71 28 0 45 115 9 79 1.50e-24 99.4
Msa0456330 AT4G33450.1 42.593 108 61 1 8 115 13 119 2.50e-24 99.8
Msa0456330 AT3G46130.3 58.333 72 30 0 44 115 9 80 2.79e-24 99.0
Msa0456330 AT1G66380.3 64.789 71 25 0 45 115 8 78 3.37e-24 95.1
Msa0456330 AT3G46130.4 59.155 71 29 0 45 115 20 90 5.26e-24 98.6
Msa0456330 AT5G02320.1 44.660 103 56 1 14 116 127 228 9.53e-24 102
Msa0456330 AT5G02320.2 44.660 103 56 1 14 116 127 228 9.53e-24 102
Msa0456330 AT5G02320.3 44.660 103 56 1 14 116 67 168 1.24e-23 101
Msa0456330 AT1G73410.2 47.573 103 51 2 14 115 6 106 3.18e-23 95.5
Msa0456330 AT1G73410.1 47.573 103 51 2 14 115 6 106 3.84e-23 96.3
Msa0456330 AT3G29020.1 42.718 103 58 1 14 116 65 166 5.77e-23 95.5
Msa0456330 AT3G29020.2 42.718 103 58 1 14 116 67 168 1.18e-22 96.3
Msa0456330 AT4G32730.5 39.806 103 61 1 14 116 87 188 3.45e-22 97.8
Msa0456330 AT4G32730.4 39.806 103 61 1 14 116 87 188 3.45e-22 97.8
Msa0456330 AT4G32730.3 39.806 103 61 1 14 116 87 188 3.45e-22 97.8
Msa0456330 AT4G32730.2 39.806 103 61 1 14 116 87 188 3.45e-22 97.8
Msa0456330 AT4G32730.1 39.806 103 61 1 14 116 87 188 3.73e-22 97.8
Msa0456330 AT3G09370.2 44.118 102 56 1 14 115 135 235 4.62e-22 97.1
Msa0456330 AT3G09370.1 41.176 119 64 2 14 127 130 247 5.33e-22 96.7
Msa0456330 AT3G09370.3 44.118 102 56 1 14 115 143 243 6.01e-22 96.7
Msa0456330 AT2G25230.1 38.333 120 71 2 7 124 19 137 6.02e-22 92.8
Msa0456330 AT5G11510.3 39.806 103 61 1 14 116 81 182 1.01e-20 93.6
Msa0456330 AT5G11510.1 39.806 103 61 1 14 116 81 182 1.01e-20 93.6
Msa0456330 AT5G11510.4 39.806 103 61 1 14 116 81 182 1.01e-20 93.6
Msa0456330 AT5G11510.2 39.806 103 61 1 14 116 81 182 1.14e-20 93.2
Msa0456330 AT5G11510.5 39.806 103 61 1 14 116 81 182 1.25e-20 93.2
Msa0456330 AT2G37630.1 32.353 136 85 2 13 141 3 138 1.43e-20 91.7
Msa0456330 AT3G23250.2 62.069 58 22 0 59 116 2 59 4.53e-20 87.8
Msa0456330 AT5G14750.4 62.069 58 22 0 59 116 2 59 5.30e-20 85.1
Msa0456330 AT5G14750.2 62.069 58 22 0 59 116 2 59 5.30e-20 85.1
Msa0456330 AT5G39700.1 40.000 100 59 1 15 114 57 155 1.16e-18 82.8
Msa0456330 AT5G40430.1 33.835 133 84 3 7 137 47 177 1.29e-18 84.3
Msa0456330 AT1G66380.2 45.783 83 45 0 12 94 8 90 2.76e-18 79.7
Msa0456330 AT2G02820.3 41.414 99 57 1 17 115 33 130 5.94e-18 83.6
Msa0456330 AT2G02820.2 41.414 99 57 1 17 115 33 130 1.04e-17 84.0
Msa0456330 AT2G02820.1 41.414 99 57 1 17 115 33 130 1.05e-17 84.0
Msa0456330 AT1G14350.2 42.424 99 56 1 17 115 28 125 2.19e-17 82.8
Msa0456330 AT1G14350.1 42.424 99 56 1 17 115 28 125 2.19e-17 82.8
Msa0456330 AT4G00540.2 38.532 109 63 2 11 116 100 207 4.75e-16 78.6
Msa0456330 AT4G00540.1 38.532 109 63 2 11 116 98 205 7.12e-16 78.6
Msa0456330 AT5G61420.1 64.000 50 18 0 81 130 2 51 1.56e-15 76.3
Msa0456330 AT4G28110.2 70.732 41 12 0 88 128 4 44 1.14e-14 72.0
Msa0456330 AT5G15310.3 38.168 131 62 4 84 199 5 131 1.85e-14 72.4
Msa0456330 AT5G14340.2 54.717 53 23 1 81 132 2 54 5.97e-14 69.7
Msa0456330 AT1G74430.2 55.769 52 23 0 77 128 8 59 2.56e-13 68.2
Msa0456330 AT1G22640.2 65.000 40 14 0 88 127 16 55 2.71e-12 65.1
Msa0456330 AT5G59780.1 57.143 42 18 0 74 115 5 46 3.60e-11 61.6
Msa0456330 AT4G25560.2 61.905 42 16 0 74 115 6 47 3.82e-11 62.4
Msa0456330 AT3G28910.2 60.000 45 18 0 78 122 2 46 5.47e-11 62.4
Msa0456330 AT3G46130.2 57.143 42 18 0 74 115 5 46 5.79e-11 61.2

Find 90 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGCCATTCTCCCATTTAA+TGG 0.217063 3_3:+49853617 Msa0456330:CDS
TAGCAATTTCAGCCATTAAA+TGG 0.223128 3_3:-49853629 None:intergenic
ACAGCATCTTCTCTTTCTTC+TGG 0.260623 3_3:-49853810 None:intergenic
CATTTCATGTTCTTGTTGTA+TGG 0.262855 3_3:-49853862 None:intergenic
CAATTCAGCCCATCATGTTT+TGG 0.275499 3_3:+49853975 Msa0456330:CDS
TGTTGGCCCTGGTAGTTAAT+TGG 0.282501 3_3:-49853741 None:intergenic
CTCAACATGGCACTCGCAAC+TGG 0.327158 3_3:+49853122 Msa0456330:CDS
CTGGTAGTTAATTGGCTTCC+TGG 0.331694 3_3:-49853733 None:intergenic
GAGGGACTAACCAGCATTCT+TGG 0.332303 3_3:-49853155 None:intergenic
AATGTTTACCCTACAATGTC+TGG 0.342765 3_3:+49853948 Msa0456330:CDS
ACAGTCTGAGTTGAATATAT+TGG 0.366444 3_3:-49854144 None:intergenic
GATTAAGTTTGACCTATCTA+AGG 0.367315 3_3:+49853839 Msa0456330:CDS
GAGAATGGCTTGTGGGTGAC+AGG 0.403681 3_3:-49853606 None:intergenic
GCTCTTCTCCATCCGAGAAA+TGG 0.404593 3_3:-49853330 None:intergenic
CTTGTTGTATGGCCTTAGAT+AGG 0.418669 3_3:-49853851 None:intergenic
TATAATATTTCTTATACCAT+AGG 0.421907 3_3:-49854203 Msa0456340:three_prime_UTR
CCAACATTCTAATGAAGCTC+TGG 0.425128 3_3:+49853758 Msa0456330:CDS
GTGTCCCAAGGTTTATTTGT+GGG 0.425448 3_3:-49853888 None:intergenic
GAGAGCTTGTTGTCTTCCTC+AGG 0.425801 3_3:-49853088 None:intergenic
AAATGGCCATGTTTCAGATC+AGG 0.429618 3_3:-49853313 None:intergenic
CTGATAGCAGCGCAGCTGCC+AGG 0.436902 3_3:+49853510 Msa0456330:CDS
TCAGCCATTAAATGGGAGAA+TGG 0.437379 3_3:-49853621 None:intergenic
TCTGAAACATGGCCATTTCT+CGG 0.444221 3_3:+49853318 Msa0456330:CDS
CCTTTATTGCCAAAACATGA+TGG 0.447943 3_3:-49853984 None:intergenic
TGCTTCCAGTACATAAACTT+TGG 0.463807 3_3:-49854025 None:intergenic
ATTGTAGGGTAAACATTGTA+TGG 0.467777 3_3:-49853942 None:intergenic
ATAATATTTCTTATACCATA+GGG 0.469555 3_3:-49854202 Msa0456340:three_prime_UTR
ACATCATTGTCGGTGCGTCC+TGG 0.471385 3_3:-49853528 None:intergenic
CATACAACAAGAACATGAAA+TGG 0.471573 3_3:+49853863 Msa0456330:CDS
AGCAATTTCAGCCATTAAAT+GGG 0.472879 3_3:-49853628 None:intergenic
CCAGAGCTTCATTAGAATGT+TGG 0.479076 3_3:-49853758 None:intergenic
AGGGACTAACCAGCATTCTT+GGG 0.483633 3_3:-49853154 None:intergenic
AATTGAAACCCAGACATTGT+AGG 0.493777 3_3:-49853957 None:intergenic
CACCTAGCTGAAGCAGCCCT+TGG 0.495944 3_3:+49853678 Msa0456330:CDS
TAATTGGCTTCCTGGTAAGA+AGG 0.496087 3_3:-49853725 None:intergenic
GTACATAAACTTTGGCTCCA+TGG 0.498108 3_3:-49854017 None:intergenic
CGCCTCATTCCCAAGAATGC+TGG 0.504148 3_3:+49853145 Msa0456330:CDS
GCCATGTTGAGCAATGTAAG+AGG 0.506799 3_3:-49853110 None:intergenic
GGCTGAAATTGCTACAACAT+TGG 0.510087 3_3:+49853638 Msa0456330:CDS
CGATGATTTAATGAACCCTA+TGG 0.511276 3_3:+49854187 Msa0456330:CDS
GTGGAAAGAGCTGCAGGCTA+AGG 0.513697 3_3:+49853272 Msa0456330:CDS
CAGGAAGCCAATTAACTACC+AGG 0.514872 3_3:+49853734 Msa0456330:CDS
AGAGATGTGGAAAGAGCTGC+AGG 0.518445 3_3:+49853266 Msa0456330:CDS
GAAAGAGCTGCAGGCTAAGG+TGG 0.518447 3_3:+49853275 Msa0456330:CDS
AGGTGCTCCACCTTCTTACC+AGG 0.518602 3_3:+49853715 Msa0456330:CDS
CCTTGGTTGTTTCAAAGATG+AGG 0.521377 3_3:+49853695 Msa0456330:CDS
TGGAGCCAAAGTTTATGTAC+TGG 0.524375 3_3:+49854020 Msa0456330:CDS
AGAATGGCTTGTGGGTGACA+GGG 0.524652 3_3:-49853605 None:intergenic
GGTACCCACAAATAAACCTT+GGG 0.525783 3_3:+49853884 Msa0456330:CDS
ATGTTTACCCTACAATGTCT+GGG 0.526506 3_3:+49853949 Msa0456330:CDS
GCTAGGTGAGCTGCCTGTGG+CGG 0.527045 3_3:-49853663 None:intergenic
ATTGAAACCCAGACATTGTA+GGG 0.535977 3_3:-49853956 None:intergenic
CATAGGGTTCATTAAATCAT+CGG 0.538774 3_3:-49854186 Msa0456340:three_prime_UTR
CAACATTCTAATGAAGCTCT+GGG 0.540066 3_3:+49853759 Msa0456330:CDS
AACCAGCATTCTTGGGAATG+AGG 0.548940 3_3:-49853147 None:intergenic
CTTTATTGCCAAAACATGAT+GGG 0.551853 3_3:-49853983 None:intergenic
GGGTTCATTAAATCATCGGC+TGG 0.556449 3_3:-49854182 Msa0456340:three_prime_UTR
CTTCATTAGAATGTTGGCCC+TGG 0.558141 3_3:-49853752 None:intergenic
ACTTGCAGTTGTTGCTGCAG+TGG 0.558821 3_3:-49853910 None:intergenic
TCCTCTTACATTGCTCAACA+TGG 0.561657 3_3:+49853109 Msa0456330:CDS
AAACATGGCCATTTCTCGGA+TGG 0.561724 3_3:+49853322 Msa0456330:CDS
TAAATAGGTCTTCAGAGATG+TGG 0.563355 3_3:+49853253 Msa0456330:intron
TACAACATTGGCACCGCCAC+AGG 0.565334 3_3:+49853650 Msa0456330:CDS
TGGTACCCACAAATAAACCT+TGG 0.568184 3_3:+49853883 Msa0456330:CDS
GGTGTCCCAAGGTTTATTTG+TGG 0.570222 3_3:-49853889 None:intergenic
GTTGCTGCAGTGGTGTCCCA+AGG 0.570689 3_3:-49853900 None:intergenic
AATGGCCATGTTTCAGATCA+GGG 0.575848 3_3:-49853312 None:intergenic
ACATTGTCCTTCTCACAGCA+TGG 0.579859 3_3:-49853046 None:intergenic
TAAATGGGAGAATGGCTTGT+GGG 0.580198 3_3:-49853613 None:intergenic
TCGTATTCCATGCTGTGAGA+AGG 0.593369 3_3:+49853039 Msa0456330:CDS
TCAACTCAGACTGTGTCGTG+TGG 0.600659 3_3:+49854153 Msa0456330:CDS
CTTCGCCCTGATCTGAAACA+TGG 0.601248 3_3:+49853307 Msa0456330:CDS
CAACTCAGACTGTGTCGTGT+GGG 0.601754 3_3:+49854154 Msa0456330:CDS
TGGAAGCACATGCATAGCCA+TGG 0.601860 3_3:+49854040 Msa0456330:CDS
TTGGCTTCCTGGTAAGAAGG+TGG 0.602905 3_3:-49853722 None:intergenic
AAACTGGCTTTGCTGATCCA+TGG 0.603647 3_3:-49854057 None:intergenic
TCAGCTAGGTGAGCTGCCTG+TGG 0.608657 3_3:-49853666 None:intergenic
AACCAAGGGCTGCTTCAGCT+AGG 0.608754 3_3:-49853680 None:intergenic
AAAACTTGAAGAGGAAAATG+GGG 0.610613 3_3:+49854085 Msa0456330:CDS
GGAAAATGGGGATGATTCTG+AGG 0.614466 3_3:+49854097 Msa0456330:CDS
GAGAGGTCAGTGGACACCTG+AGG 0.624551 3_3:+49853072 Msa0456330:CDS
CATGTTTCAGATCAGGGCGA+AGG 0.628322 3_3:-49853306 None:intergenic
CCTCATCTTTGAAACAACCA+AGG 0.643946 3_3:-49853695 None:intergenic
CTCATCTTTGAAACAACCAA+GGG 0.652070 3_3:-49853694 None:intergenic
GAGAAGGACAATGTGAAGAG+AGG 0.654708 3_3:+49853055 Msa0456330:CDS
AGGAAGCCAATTAACTACCA+GGG 0.690655 3_3:+49853735 Msa0456330:CDS
ATAAAGGGGATGCATCACCA+TGG 0.694152 3_3:+49854000 Msa0456330:CDS
TTAAATGGGAGAATGGCTTG+TGG 0.703670 3_3:-49853614 None:intergenic
ACAATGTGAAGAGAGGTCAG+TGG 0.730164 3_3:+49853062 Msa0456330:CDS
AACATTCTAATGAAGCTCTG+GGG 0.732971 3_3:+49853760 Msa0456330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTGGATTAAATTAAAT+AGG + chr3_3:49853238-49853257 Msa0456330:intron 15.0%
!!! TTTTGTGGATTAAATTAAAT+AGG + chr3_3:49853238-49853257 Msa0456330:intron 15.0%
!! AGATTATATTTAGACGAATA+GGG - chr3_3:49853182-49853201 None:intergenic 20.0%
!!! ACTTTAATACTTGATTTTTG+TGG + chr3_3:49853223-49853242 Msa0456330:intron 20.0%
!! TAATGCATATATAACATTTG+TGG - chr3_3:49853396-49853415 None:intergenic 20.0%
!! CAAATGTTATATATGCATTA+AGG + chr3_3:49853396-49853415 Msa0456330:intron 20.0%
!! AGATTATATTTAGACGAATA+GGG - chr3_3:49853182-49853201 None:intergenic 20.0%
!!! ACTTTAATACTTGATTTTTG+TGG + chr3_3:49853223-49853242 Msa0456330:intron 20.0%
!! TAATGCATATATAACATTTG+TGG - chr3_3:49853396-49853415 None:intergenic 20.0%
!! CAAATGTTATATATGCATTA+AGG + chr3_3:49853396-49853415 Msa0456330:intron 20.0%
! CAGATTATATTTAGACGAAT+AGG - chr3_3:49853183-49853202 None:intergenic 25.0%
! TGAGATTCTCTTTATCATAT+TGG + chr3_3:49853453-49853472 Msa0456330:intron 25.0%
!!! TTGGTAATGATTTGCTTAAA+TGG + chr3_3:49853472-49853491 Msa0456330:intron 25.0%
!! ATGATTTTTGACATCATTGT+CGG - chr3_3:49853541-49853560 None:intergenic 25.0%
! ACAATGATGTCAAAAATCAT+TGG + chr3_3:49853541-49853560 Msa0456330:CDS 25.0%
! AAAAACTTGAAGAGGAAAAT+GGG + chr3_3:49854084-49854103 Msa0456330:CDS 25.0%
! CAGATTATATTTAGACGAAT+AGG - chr3_3:49853183-49853202 None:intergenic 25.0%
! TGAGATTCTCTTTATCATAT+TGG + chr3_3:49853453-49853472 Msa0456330:intron 25.0%
!!! TTGGTAATGATTTGCTTAAA+TGG + chr3_3:49853472-49853491 Msa0456330:intron 25.0%
!! ATGATTTTTGACATCATTGT+CGG - chr3_3:49853541-49853560 None:intergenic 25.0%
! ACAATGATGTCAAAAATCAT+TGG + chr3_3:49853541-49853560 Msa0456330:CDS 25.0%
! AAAAACTTGAAGAGGAAAAT+GGG + chr3_3:49854084-49854103 Msa0456330:CDS 25.0%
!!! TTCATTCAGTTTTTGGTAAC+AGG + chr3_3:49853368-49853387 Msa0456330:CDS 30.0%
AGCAATTTCAGCCATTAAAT+GGG - chr3_3:49853631-49853650 None:intergenic 30.0%
TAGCAATTTCAGCCATTAAA+TGG - chr3_3:49853632-49853651 None:intergenic 30.0%
GATTAAGTTTGACCTATCTA+AGG + chr3_3:49853839-49853858 Msa0456330:CDS 30.0%
! CATTTCATGTTCTTGTTGTA+TGG - chr3_3:49853865-49853884 None:intergenic 30.0%
CATACAACAAGAACATGAAA+TGG + chr3_3:49853863-49853882 Msa0456330:CDS 30.0%
ATTGTAGGGTAAACATTGTA+TGG - chr3_3:49853945-49853964 None:intergenic 30.0%
CTTTATTGCCAAAACATGAT+GGG - chr3_3:49853986-49854005 None:intergenic 30.0%
!!! CATCATGTTTTGGCAATAAA+GGG + chr3_3:49853985-49854004 Msa0456330:CDS 30.0%
!!! ATCATGTTTTGGCAATAAAG+GGG + chr3_3:49853986-49854005 Msa0456330:CDS 30.0%
!! CTTCAAGTTTTTCATGAAAC+TGG - chr3_3:49854076-49854095 None:intergenic 30.0%
GTTTCATGAAAAACTTGAAG+AGG + chr3_3:49854076-49854095 Msa0456330:CDS 30.0%
GAAAAACTTGAAGAGGAAAA+TGG + chr3_3:49854083-49854102 Msa0456330:CDS 30.0%
AAAACTTGAAGAGGAAAATG+GGG + chr3_3:49854085-49854104 Msa0456330:CDS 30.0%
! ACAGTCTGAGTTGAATATAT+TGG - chr3_3:49854147-49854166 None:intergenic 30.0%
CATAGGGTTCATTAAATCAT+CGG - chr3_3:49854189-49854208 Msa0456340:three_prime_UTR 30.0%
!!! TTCATTCAGTTTTTGGTAAC+AGG + chr3_3:49853368-49853387 Msa0456330:CDS 30.0%
AGCAATTTCAGCCATTAAAT+GGG - chr3_3:49853631-49853650 None:intergenic 30.0%
TAGCAATTTCAGCCATTAAA+TGG - chr3_3:49853632-49853651 None:intergenic 30.0%
GATTAAGTTTGACCTATCTA+AGG + chr3_3:49853839-49853858 Msa0456330:CDS 30.0%
! CATTTCATGTTCTTGTTGTA+TGG - chr3_3:49853865-49853884 None:intergenic 30.0%
CATACAACAAGAACATGAAA+TGG + chr3_3:49853863-49853882 Msa0456330:CDS 30.0%
ATTGTAGGGTAAACATTGTA+TGG - chr3_3:49853945-49853964 None:intergenic 30.0%
CTTTATTGCCAAAACATGAT+GGG - chr3_3:49853986-49854005 None:intergenic 30.0%
!!! CATCATGTTTTGGCAATAAA+GGG + chr3_3:49853985-49854004 Msa0456330:CDS 30.0%
!!! ATCATGTTTTGGCAATAAAG+GGG + chr3_3:49853986-49854005 Msa0456330:CDS 30.0%
!! CTTCAAGTTTTTCATGAAAC+TGG - chr3_3:49854076-49854095 None:intergenic 30.0%
GTTTCATGAAAAACTTGAAG+AGG + chr3_3:49854076-49854095 Msa0456330:CDS 30.0%
GAAAAACTTGAAGAGGAAAA+TGG + chr3_3:49854083-49854102 Msa0456330:CDS 30.0%
AAAACTTGAAGAGGAAAATG+GGG + chr3_3:49854085-49854104 Msa0456330:CDS 30.0%
! ACAGTCTGAGTTGAATATAT+TGG - chr3_3:49854147-49854166 None:intergenic 30.0%
CATAGGGTTCATTAAATCAT+CGG - chr3_3:49854189-49854208 Msa0456340:three_prime_UTR 30.0%
TATTTAGACGAATAGGGAGA+GGG - chr3_3:49853176-49853195 None:intergenic 35.0%
ATATTTAGACGAATAGGGAG+AGG - chr3_3:49853177-49853196 None:intergenic 35.0%
TAAATAGGTCTTCAGAGATG+TGG + chr3_3:49853253-49853272 Msa0456330:intron 35.0%
! GTGAAGCTTCATTCAGTTTT+TGG + chr3_3:49853361-49853380 Msa0456330:CDS 35.0%
TGCTTAAATGGTTGTTCAGA+TGG + chr3_3:49853484-49853503 Msa0456330:intron 35.0%
!!! TGACAGTTTCTTTTTCAGCT+TGG - chr3_3:49853571-49853590 None:intergenic 35.0%
AAGCTGAAAAAGAAACTGTC+AGG + chr3_3:49853570-49853589 Msa0456330:CDS 35.0%
AAAAAGAAACTGTCAGGCAT+GGG + chr3_3:49853576-49853595 Msa0456330:CDS 35.0%
!! CTCATCTTTGAAACAACCAA+GGG - chr3_3:49853697-49853716 None:intergenic 35.0%
CAACATTCTAATGAAGCTCT+GGG + chr3_3:49853759-49853778 Msa0456330:CDS 35.0%
AACATTCTAATGAAGCTCTG+GGG + chr3_3:49853760-49853779 Msa0456330:CDS 35.0%
AATGTTTACCCTACAATGTC+TGG + chr3_3:49853948-49853967 Msa0456330:CDS 35.0%
ATGTTTACCCTACAATGTCT+GGG + chr3_3:49853949-49853968 Msa0456330:CDS 35.0%
ATTGAAACCCAGACATTGTA+GGG - chr3_3:49853959-49853978 None:intergenic 35.0%
AATTGAAACCCAGACATTGT+AGG - chr3_3:49853960-49853979 None:intergenic 35.0%
CCTTTATTGCCAAAACATGA+TGG - chr3_3:49853987-49854006 None:intergenic 35.0%
!!! CCATCATGTTTTGGCAATAA+AGG + chr3_3:49853984-49854003 Msa0456330:CDS 35.0%
TGCTTCCAGTACATAAACTT+TGG - chr3_3:49854028-49854047 None:intergenic 35.0%
CGATGATTTAATGAACCCTA+TGG + chr3_3:49854187-49854206 Msa0456330:CDS 35.0%
TATTTAGACGAATAGGGAGA+GGG - chr3_3:49853176-49853195 None:intergenic 35.0%
ATATTTAGACGAATAGGGAG+AGG - chr3_3:49853177-49853196 None:intergenic 35.0%
TAAATAGGTCTTCAGAGATG+TGG + chr3_3:49853253-49853272 Msa0456330:intron 35.0%
! GTGAAGCTTCATTCAGTTTT+TGG + chr3_3:49853361-49853380 Msa0456330:CDS 35.0%
TGCTTAAATGGTTGTTCAGA+TGG + chr3_3:49853484-49853503 Msa0456330:intron 35.0%
!!! TGACAGTTTCTTTTTCAGCT+TGG - chr3_3:49853571-49853590 None:intergenic 35.0%
AAGCTGAAAAAGAAACTGTC+AGG + chr3_3:49853570-49853589 Msa0456330:CDS 35.0%
AAAAAGAAACTGTCAGGCAT+GGG + chr3_3:49853576-49853595 Msa0456330:CDS 35.0%
!! CTCATCTTTGAAACAACCAA+GGG - chr3_3:49853697-49853716 None:intergenic 35.0%
CAACATTCTAATGAAGCTCT+GGG + chr3_3:49853759-49853778 Msa0456330:CDS 35.0%
AACATTCTAATGAAGCTCTG+GGG + chr3_3:49853760-49853779 Msa0456330:CDS 35.0%
AATGTTTACCCTACAATGTC+TGG + chr3_3:49853948-49853967 Msa0456330:CDS 35.0%
ATGTTTACCCTACAATGTCT+GGG + chr3_3:49853949-49853968 Msa0456330:CDS 35.0%
ATTGAAACCCAGACATTGTA+GGG - chr3_3:49853959-49853978 None:intergenic 35.0%
AATTGAAACCCAGACATTGT+AGG - chr3_3:49853960-49853979 None:intergenic 35.0%
CCTTTATTGCCAAAACATGA+TGG - chr3_3:49853987-49854006 None:intergenic 35.0%
!!! CCATCATGTTTTGGCAATAA+AGG + chr3_3:49853984-49854003 Msa0456330:CDS 35.0%
TGCTTCCAGTACATAAACTT+TGG - chr3_3:49854028-49854047 None:intergenic 35.0%
CGATGATTTAATGAACCCTA+TGG + chr3_3:49854187-49854206 Msa0456330:CDS 35.0%
TCCTCTTACATTGCTCAACA+TGG + chr3_3:49853109-49853128 Msa0456330:CDS 40.0%
AATGGCCATGTTTCAGATCA+GGG - chr3_3:49853315-49853334 None:intergenic 40.0%
AAATGGCCATGTTTCAGATC+AGG - chr3_3:49853316-49853335 None:intergenic 40.0%
! TCTGAAACATGGCCATTTCT+CGG + chr3_3:49853318-49853337 Msa0456330:CDS 40.0%
GAAAAAGAAACTGTCAGGCA+TGG + chr3_3:49853575-49853594 Msa0456330:CDS 40.0%
! TAAATGGGAGAATGGCTTGT+GGG - chr3_3:49853616-49853635 None:intergenic 40.0%
TTAAATGGGAGAATGGCTTG+TGG - chr3_3:49853617-49853636 None:intergenic 40.0%
CAAGCCATTCTCCCATTTAA+TGG + chr3_3:49853617-49853636 Msa0456330:CDS 40.0%
TCAGCCATTAAATGGGAGAA+TGG - chr3_3:49853624-49853643 None:intergenic 40.0%
GGCTGAAATTGCTACAACAT+TGG + chr3_3:49853638-49853657 Msa0456330:CDS 40.0%
!! CCTCATCTTTGAAACAACCA+AGG - chr3_3:49853698-49853717 None:intergenic 40.0%
! CCTTGGTTGTTTCAAAGATG+AGG + chr3_3:49853695-49853714 Msa0456330:CDS 40.0%
! TAATTGGCTTCCTGGTAAGA+AGG - chr3_3:49853728-49853747 None:intergenic 40.0%
AGGAAGCCAATTAACTACCA+GGG + chr3_3:49853735-49853754 Msa0456330:CDS 40.0%
CCAGAGCTTCATTAGAATGT+TGG - chr3_3:49853761-49853780 None:intergenic 40.0%
CCAACATTCTAATGAAGCTC+TGG + chr3_3:49853758-49853777 Msa0456330:CDS 40.0%
ACAGCATCTTCTCTTTCTTC+TGG - chr3_3:49853813-49853832 None:intergenic 40.0%
! CTTGTTGTATGGCCTTAGAT+AGG - chr3_3:49853854-49853873 None:intergenic 40.0%
TGGTACCCACAAATAAACCT+TGG + chr3_3:49853883-49853902 Msa0456330:CDS 40.0%
GGTACCCACAAATAAACCTT+GGG + chr3_3:49853884-49853903 Msa0456330:CDS 40.0%
GTGTCCCAAGGTTTATTTGT+GGG - chr3_3:49853891-49853910 None:intergenic 40.0%
! CAATTCAGCCCATCATGTTT+TGG + chr3_3:49853975-49853994 Msa0456330:CDS 40.0%
! GTACATAAACTTTGGCTCCA+TGG - chr3_3:49854020-49854039 None:intergenic 40.0%
TGGAGCCAAAGTTTATGTAC+TGG + chr3_3:49854020-49854039 Msa0456330:CDS 40.0%
TCCTCTTACATTGCTCAACA+TGG + chr3_3:49853109-49853128 Msa0456330:CDS 40.0%
AATGGCCATGTTTCAGATCA+GGG - chr3_3:49853315-49853334 None:intergenic 40.0%
AAATGGCCATGTTTCAGATC+AGG - chr3_3:49853316-49853335 None:intergenic 40.0%
! TCTGAAACATGGCCATTTCT+CGG + chr3_3:49853318-49853337 Msa0456330:CDS 40.0%
GAAAAAGAAACTGTCAGGCA+TGG + chr3_3:49853575-49853594 Msa0456330:CDS 40.0%
! TAAATGGGAGAATGGCTTGT+GGG - chr3_3:49853616-49853635 None:intergenic 40.0%
TTAAATGGGAGAATGGCTTG+TGG - chr3_3:49853617-49853636 None:intergenic 40.0%
CAAGCCATTCTCCCATTTAA+TGG + chr3_3:49853617-49853636 Msa0456330:CDS 40.0%
TCAGCCATTAAATGGGAGAA+TGG - chr3_3:49853624-49853643 None:intergenic 40.0%
GGCTGAAATTGCTACAACAT+TGG + chr3_3:49853638-49853657 Msa0456330:CDS 40.0%
!! CCTCATCTTTGAAACAACCA+AGG - chr3_3:49853698-49853717 None:intergenic 40.0%
! CCTTGGTTGTTTCAAAGATG+AGG + chr3_3:49853695-49853714 Msa0456330:CDS 40.0%
! TAATTGGCTTCCTGGTAAGA+AGG - chr3_3:49853728-49853747 None:intergenic 40.0%
AGGAAGCCAATTAACTACCA+GGG + chr3_3:49853735-49853754 Msa0456330:CDS 40.0%
CCAGAGCTTCATTAGAATGT+TGG - chr3_3:49853761-49853780 None:intergenic 40.0%
CCAACATTCTAATGAAGCTC+TGG + chr3_3:49853758-49853777 Msa0456330:CDS 40.0%
ACAGCATCTTCTCTTTCTTC+TGG - chr3_3:49853813-49853832 None:intergenic 40.0%
! CTTGTTGTATGGCCTTAGAT+AGG - chr3_3:49853854-49853873 None:intergenic 40.0%
TGGTACCCACAAATAAACCT+TGG + chr3_3:49853883-49853902 Msa0456330:CDS 40.0%
GGTACCCACAAATAAACCTT+GGG + chr3_3:49853884-49853903 Msa0456330:CDS 40.0%
GTGTCCCAAGGTTTATTTGT+GGG - chr3_3:49853891-49853910 None:intergenic 40.0%
! CAATTCAGCCCATCATGTTT+TGG + chr3_3:49853975-49853994 Msa0456330:CDS 40.0%
! GTACATAAACTTTGGCTCCA+TGG - chr3_3:49854020-49854039 None:intergenic 40.0%
TGGAGCCAAAGTTTATGTAC+TGG + chr3_3:49854020-49854039 Msa0456330:CDS 40.0%
TCGTATTCCATGCTGTGAGA+AGG + chr3_3:49853039-49853058 Msa0456330:CDS 45.0%
ACATTGTCCTTCTCACAGCA+TGG - chr3_3:49853049-49853068 None:intergenic 45.0%
GAGAAGGACAATGTGAAGAG+AGG + chr3_3:49853055-49853074 Msa0456330:CDS 45.0%
ACAATGTGAAGAGAGGTCAG+TGG + chr3_3:49853062-49853081 Msa0456330:CDS 45.0%
GCCATGTTGAGCAATGTAAG+AGG - chr3_3:49853113-49853132 None:intergenic 45.0%
AACCAGCATTCTTGGGAATG+AGG - chr3_3:49853150-49853169 None:intergenic 45.0%
AGGGACTAACCAGCATTCTT+GGG - chr3_3:49853157-49853176 None:intergenic 45.0%
AAACATGGCCATTTCTCGGA+TGG + chr3_3:49853322-49853341 Msa0456330:CDS 45.0%
! CTGGTAGTTAATTGGCTTCC+TGG - chr3_3:49853736-49853755 None:intergenic 45.0%
CAGGAAGCCAATTAACTACC+AGG + chr3_3:49853734-49853753 Msa0456330:CDS 45.0%
TGTTGGCCCTGGTAGTTAAT+TGG - chr3_3:49853744-49853763 None:intergenic 45.0%
CTTCATTAGAATGTTGGCCC+TGG - chr3_3:49853755-49853774 None:intergenic 45.0%
GGTGTCCCAAGGTTTATTTG+TGG - chr3_3:49853892-49853911 None:intergenic 45.0%
ATAAAGGGGATGCATCACCA+TGG + chr3_3:49854000-49854019 Msa0456330:CDS 45.0%
!! AAACTGGCTTTGCTGATCCA+TGG - chr3_3:49854060-49854079 None:intergenic 45.0%
GGAAAATGGGGATGATTCTG+AGG + chr3_3:49854097-49854116 Msa0456330:CDS 45.0%
GGGTTCATTAAATCATCGGC+TGG - chr3_3:49854185-49854204 Msa0456340:three_prime_UTR 45.0%
TCGTATTCCATGCTGTGAGA+AGG + chr3_3:49853039-49853058 Msa0456330:CDS 45.0%
ACATTGTCCTTCTCACAGCA+TGG - chr3_3:49853049-49853068 None:intergenic 45.0%
GAGAAGGACAATGTGAAGAG+AGG + chr3_3:49853055-49853074 Msa0456330:CDS 45.0%
ACAATGTGAAGAGAGGTCAG+TGG + chr3_3:49853062-49853081 Msa0456330:CDS 45.0%
GCCATGTTGAGCAATGTAAG+AGG - chr3_3:49853113-49853132 None:intergenic 45.0%
AACCAGCATTCTTGGGAATG+AGG - chr3_3:49853150-49853169 None:intergenic 45.0%
AGGGACTAACCAGCATTCTT+GGG - chr3_3:49853157-49853176 None:intergenic 45.0%
AAACATGGCCATTTCTCGGA+TGG + chr3_3:49853322-49853341 Msa0456330:CDS 45.0%
! CTGGTAGTTAATTGGCTTCC+TGG - chr3_3:49853736-49853755 None:intergenic 45.0%
CAGGAAGCCAATTAACTACC+AGG + chr3_3:49853734-49853753 Msa0456330:CDS 45.0%
TGTTGGCCCTGGTAGTTAAT+TGG - chr3_3:49853744-49853763 None:intergenic 45.0%
CTTCATTAGAATGTTGGCCC+TGG - chr3_3:49853755-49853774 None:intergenic 45.0%
GGTGTCCCAAGGTTTATTTG+TGG - chr3_3:49853892-49853911 None:intergenic 45.0%
ATAAAGGGGATGCATCACCA+TGG + chr3_3:49854000-49854019 Msa0456330:CDS 45.0%
!! AAACTGGCTTTGCTGATCCA+TGG - chr3_3:49854060-49854079 None:intergenic 45.0%
GGAAAATGGGGATGATTCTG+AGG + chr3_3:49854097-49854116 Msa0456330:CDS 45.0%
GGGTTCATTAAATCATCGGC+TGG - chr3_3:49854185-49854204 Msa0456340:three_prime_UTR 45.0%
!! GAGAGCTTGTTGTCTTCCTC+AGG - chr3_3:49853091-49853110 None:intergenic 50.0%
GAGGGACTAACCAGCATTCT+TGG - chr3_3:49853158-49853177 None:intergenic 50.0%
AGAGATGTGGAAAGAGCTGC+AGG + chr3_3:49853266-49853285 Msa0456330:CDS 50.0%
CATGTTTCAGATCAGGGCGA+AGG - chr3_3:49853309-49853328 None:intergenic 50.0%
! CTTCGCCCTGATCTGAAACA+TGG + chr3_3:49853307-49853326 Msa0456330:CDS 50.0%
GCTCTTCTCCATCCGAGAAA+TGG - chr3_3:49853333-49853352 None:intergenic 50.0%
! AGAATGGCTTGTGGGTGACA+GGG - chr3_3:49853608-49853627 None:intergenic 50.0%
TTGGCTTCCTGGTAAGAAGG+TGG - chr3_3:49853725-49853744 None:intergenic 50.0%
ACTTGCAGTTGTTGCTGCAG+TGG - chr3_3:49853913-49853932 None:intergenic 50.0%
! TGGAAGCACATGCATAGCCA+TGG + chr3_3:49854040-49854059 Msa0456330:CDS 50.0%
TCAACTCAGACTGTGTCGTG+TGG + chr3_3:49854153-49854172 Msa0456330:CDS 50.0%
CAACTCAGACTGTGTCGTGT+GGG + chr3_3:49854154-49854173 Msa0456330:CDS 50.0%
!! GAGAGCTTGTTGTCTTCCTC+AGG - chr3_3:49853091-49853110 None:intergenic 50.0%
GAGGGACTAACCAGCATTCT+TGG - chr3_3:49853158-49853177 None:intergenic 50.0%
AGAGATGTGGAAAGAGCTGC+AGG + chr3_3:49853266-49853285 Msa0456330:CDS 50.0%
CATGTTTCAGATCAGGGCGA+AGG - chr3_3:49853309-49853328 None:intergenic 50.0%
! CTTCGCCCTGATCTGAAACA+TGG + chr3_3:49853307-49853326 Msa0456330:CDS 50.0%
GCTCTTCTCCATCCGAGAAA+TGG - chr3_3:49853333-49853352 None:intergenic 50.0%
! AGAATGGCTTGTGGGTGACA+GGG - chr3_3:49853608-49853627 None:intergenic 50.0%
TTGGCTTCCTGGTAAGAAGG+TGG - chr3_3:49853725-49853744 None:intergenic 50.0%
ACTTGCAGTTGTTGCTGCAG+TGG - chr3_3:49853913-49853932 None:intergenic 50.0%
! TGGAAGCACATGCATAGCCA+TGG + chr3_3:49854040-49854059 Msa0456330:CDS 50.0%
TCAACTCAGACTGTGTCGTG+TGG + chr3_3:49854153-49854172 Msa0456330:CDS 50.0%
CAACTCAGACTGTGTCGTGT+GGG + chr3_3:49854154-49854173 Msa0456330:CDS 50.0%
CTCAACATGGCACTCGCAAC+TGG + chr3_3:49853122-49853141 Msa0456330:CDS 55.0%
CGCCTCATTCCCAAGAATGC+TGG + chr3_3:49853145-49853164 Msa0456330:CDS 55.0%
GTGGAAAGAGCTGCAGGCTA+AGG + chr3_3:49853272-49853291 Msa0456330:CDS 55.0%
GAAAGAGCTGCAGGCTAAGG+TGG + chr3_3:49853275-49853294 Msa0456330:CDS 55.0%
ACATCATTGTCGGTGCGTCC+TGG - chr3_3:49853531-49853550 None:intergenic 55.0%
! GAGAATGGCTTGTGGGTGAC+AGG - chr3_3:49853609-49853628 None:intergenic 55.0%
TACAACATTGGCACCGCCAC+AGG + chr3_3:49853650-49853669 Msa0456330:CDS 55.0%
AACCAAGGGCTGCTTCAGCT+AGG - chr3_3:49853683-49853702 None:intergenic 55.0%
AGGTGCTCCACCTTCTTACC+AGG + chr3_3:49853715-49853734 Msa0456330:CDS 55.0%
CTCAACATGGCACTCGCAAC+TGG + chr3_3:49853122-49853141 Msa0456330:CDS 55.0%
CGCCTCATTCCCAAGAATGC+TGG + chr3_3:49853145-49853164 Msa0456330:CDS 55.0%
GTGGAAAGAGCTGCAGGCTA+AGG + chr3_3:49853272-49853291 Msa0456330:CDS 55.0%
GAAAGAGCTGCAGGCTAAGG+TGG + chr3_3:49853275-49853294 Msa0456330:CDS 55.0%
ACATCATTGTCGGTGCGTCC+TGG - chr3_3:49853531-49853550 None:intergenic 55.0%
! GAGAATGGCTTGTGGGTGAC+AGG - chr3_3:49853609-49853628 None:intergenic 55.0%
TACAACATTGGCACCGCCAC+AGG + chr3_3:49853650-49853669 Msa0456330:CDS 55.0%
AACCAAGGGCTGCTTCAGCT+AGG - chr3_3:49853683-49853702 None:intergenic 55.0%
AGGTGCTCCACCTTCTTACC+AGG + chr3_3:49853715-49853734 Msa0456330:CDS 55.0%
GAGAGGTCAGTGGACACCTG+AGG + chr3_3:49853072-49853091 Msa0456330:CDS 60.0%
TCAGCTAGGTGAGCTGCCTG+TGG - chr3_3:49853669-49853688 None:intergenic 60.0%
CACCTAGCTGAAGCAGCCCT+TGG + chr3_3:49853678-49853697 Msa0456330:CDS 60.0%
GTTGCTGCAGTGGTGTCCCA+AGG - chr3_3:49853903-49853922 None:intergenic 60.0%
GAGAGGTCAGTGGACACCTG+AGG + chr3_3:49853072-49853091 Msa0456330:CDS 60.0%
TCAGCTAGGTGAGCTGCCTG+TGG - chr3_3:49853669-49853688 None:intergenic 60.0%
CACCTAGCTGAAGCAGCCCT+TGG + chr3_3:49853678-49853697 Msa0456330:CDS 60.0%
GTTGCTGCAGTGGTGTCCCA+AGG - chr3_3:49853903-49853922 None:intergenic 60.0%
CTGATAGCAGCGCAGCTGCC+AGG + chr3_3:49853510-49853529 Msa0456330:CDS 65.0%
GCTAGGTGAGCTGCCTGTGG+CGG - chr3_3:49853666-49853685 None:intergenic 65.0%
CTGATAGCAGCGCAGCTGCC+AGG + chr3_3:49853510-49853529 Msa0456330:CDS 65.0%
GCTAGGTGAGCTGCCTGTGG+CGG - chr3_3:49853666-49853685 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 49853034 49854214 49853034 ID=Msa0456330;Name=Msa0456330
chr3_3 mRNA 49853034 49854214 49853034 ID=Msa0456330-mRNA-1;Parent=Msa0456330;Name=Msa0456330-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|3|0|324
chr3_3 exon 49853034 49853166 49853034 ID=Msa0456330-mRNA-1:exon:9423;Parent=Msa0456330-mRNA-1
chr3_3 exon 49853260 49853389 49853260 ID=Msa0456330-mRNA-1:exon:9424;Parent=Msa0456330-mRNA-1
chr3_3 exon 49853503 49854214 49853503 ID=Msa0456330-mRNA-1:exon:9425;Parent=Msa0456330-mRNA-1
chr3_3 CDS 49853034 49853166 49853034 ID=Msa0456330-mRNA-1:cds;Parent=Msa0456330-mRNA-1
chr3_3 CDS 49853260 49853389 49853260 ID=Msa0456330-mRNA-1:cds;Parent=Msa0456330-mRNA-1
chr3_3 CDS 49853503 49854214 49853503 ID=Msa0456330-mRNA-1:cds;Parent=Msa0456330-mRNA-1
Gene Sequence

>Msa0456330

ATGGGTCGTATTCCATGCTGTGAGAAGGACAATGTGAAGAGAGGTCAGTGGACACCTGAGGAAGACAACAAGCTCTCCTCTTACATTGCTCAACATGGCACTCGCAACTGGCGCCTCATTCCCAAGAATGCTGGTCTTCAGAGATGTGGAAAGAGCTGCAGGCTAAGGTGGACTAATTACCTTCGCCCTGATCTGAAACATGGCCATTTCTCGGATGGAGAAGAGCAAACAATTGTGAAGCTTCATTCAGTTTTTGGTAACAGATGGTCTCTGATAGCAGCGCAGCTGCCAGGACGCACCGACAATGATGTCAAAAATCATTGGAACACCAAGCTGAAAAAGAAACTGTCAGGCATGGGTATAGACCCTGTCACCCACAAGCCATTCTCCCATTTAATGGCTGAAATTGCTACAACATTGGCACCGCCACAGGCAGCTCACCTAGCTGAAGCAGCCCTTGGTTGTTTCAAAGATGAGGTGCTCCACCTTCTTACCAGGAAGCCAATTAACTACCAGGGCCAACATTCTAATGAAGCTCTGGGGAATAACATCAATTACTTTAACTGTAAGCCAGAAGAAAGAGAAGATGCTGTTGAGAAGATTAAGTTTGACCTATCTAAGGCCATACAACAAGAACATGAAATGGTACCCACAAATAAACCTTGGGACACCACTGCAGCAACAACTGCAAGTTTTGCAATGCCATACAATGTTTACCCTACAATGTCTGGGTTTCAATTCAGCCCATCATGTTTTGGCAATAAAGGGGATGCATCACCATGGAGCCAAAGTTTATGTACTGGAAGCACATGCATAGCCATGGATCAGCAAAGCCAGTTTCATGAAAAACTTGAAGAGGAAAATGGGGATGATTCTGAGGCTACAAAAGAAATTAGAAATCTATCCAATATATTCAACTCAGACTGTGTCGTGTGGGATTTACCAGCCGATGATTTAATGAACCCTATGGTATAA
Protein sequence

>Msa0456330

MGRIPCCEKDNVKRGQWTPEEDNKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGHFSDGEEQTIVKLHSVFGNRWSLIAAQLPGRTDNDVKNHWNTKLKKKLSGMGIDPVTHKPFSHLMAEIATTLAPPQAAHLAEAALGCFKDEVLHLLTRKPINYQGQHSNEALGNNINYFNCKPEEREDAVEKIKFDLSKAIQQEHEMVPTNKPWDTTAATTASFAMPYNVYPTMSGFQFSPSCFGNKGDASPWSQSLCTGSTCIAMDQQSQFHEKLEEENGDDSEATKEIRNLSNIFNSDCVVWDLPADDLMNPMV*