Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456440 | XP_003600468.2 | 92.857 | 350 | 4 | 2 | 1 | 350 | 1 | 329 | 0.0 | 649 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456440 | sp|Q9LXV5|NFYA1_ARATH | 51.439 | 278 | 105 | 9 | 16 | 289 | 17 | 268 | 2.53e-76 | 239 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456440 | G7IYA5 | 92.857 | 350 | 4 | 2 | 1 | 350 | 1 | 329 | 0.0 | 649 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0456440 | TF | NF-YA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456440 | MtrunA17_Chr3g0103391 | 92.857 | 350 | 4 | 2 | 1 | 350 | 1 | 329 | 0.0 | 649 |
| Msa0456440 | MtrunA17_Chr8g0352251 | 42.241 | 232 | 87 | 8 | 20 | 247 | 21 | 209 | 2.70e-41 | 146 |
| Msa0456440 | MtrunA17_Chr2g0300261 | 57.658 | 111 | 40 | 4 | 142 | 247 | 25 | 133 | 7.03e-34 | 125 |
| Msa0456440 | MtrunA17_Chr2g0292411 | 55.660 | 106 | 40 | 2 | 163 | 263 | 81 | 184 | 2.17e-30 | 115 |
| Msa0456440 | MtrunA17_Chr8g0343451 | 50.000 | 120 | 47 | 4 | 131 | 247 | 111 | 220 | 3.88e-30 | 117 |
| Msa0456440 | MtrunA17_Chr2g0329811 | 52.174 | 115 | 38 | 4 | 151 | 250 | 134 | 246 | 2.97e-27 | 110 |
| Msa0456440 | MtrunA17_Chr7g0267581 | 43.713 | 167 | 71 | 7 | 146 | 306 | 131 | 280 | 5.88e-27 | 108 |
| Msa0456440 | MtrunA17_Chr1g0177091 | 50.000 | 116 | 42 | 5 | 146 | 258 | 129 | 231 | 7.35e-25 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456440 | AT5G12840.4 | 51.625 | 277 | 105 | 8 | 16 | 289 | 17 | 267 | 4.38e-79 | 243 |
| Msa0456440 | AT5G12840.2 | 51.625 | 277 | 105 | 8 | 16 | 289 | 17 | 267 | 4.38e-79 | 243 |
| Msa0456440 | AT5G12840.5 | 51.439 | 278 | 105 | 9 | 16 | 289 | 17 | 268 | 2.57e-77 | 239 |
| Msa0456440 | AT5G12840.3 | 51.439 | 278 | 105 | 9 | 16 | 289 | 17 | 268 | 2.57e-77 | 239 |
| Msa0456440 | AT5G12840.1 | 51.439 | 278 | 105 | 9 | 16 | 289 | 17 | 268 | 2.57e-77 | 239 |
| Msa0456440 | AT3G20910.1 | 54.393 | 239 | 60 | 8 | 116 | 350 | 110 | 303 | 2.02e-68 | 217 |
| Msa0456440 | AT2G34720.2 | 44.295 | 149 | 75 | 3 | 137 | 279 | 6 | 152 | 1.34e-30 | 114 |
| Msa0456440 | AT2G34720.3 | 44.295 | 149 | 75 | 3 | 137 | 279 | 6 | 152 | 1.34e-30 | 114 |
| Msa0456440 | AT1G30500.1 | 60.000 | 105 | 35 | 4 | 150 | 252 | 59 | 158 | 1.51e-30 | 115 |
| Msa0456440 | AT1G72830.2 | 55.140 | 107 | 44 | 3 | 144 | 247 | 130 | 235 | 4.08e-30 | 118 |
| Msa0456440 | AT1G30500.2 | 57.547 | 106 | 40 | 3 | 150 | 252 | 59 | 162 | 1.81e-29 | 112 |
| Msa0456440 | AT1G72830.1 | 54.206 | 107 | 44 | 3 | 144 | 247 | 130 | 234 | 3.01e-29 | 115 |
| Msa0456440 | AT2G34720.1 | 46.324 | 136 | 65 | 3 | 150 | 279 | 54 | 187 | 6.94e-29 | 111 |
| Msa0456440 | AT1G17590.3 | 56.566 | 99 | 35 | 4 | 151 | 247 | 135 | 227 | 1.25e-27 | 110 |
| Msa0456440 | AT1G17590.2 | 56.566 | 99 | 35 | 4 | 151 | 247 | 135 | 227 | 1.25e-27 | 110 |
| Msa0456440 | AT1G17590.4 | 56.566 | 99 | 35 | 4 | 151 | 247 | 135 | 227 | 1.25e-27 | 110 |
| Msa0456440 | AT1G17590.1 | 56.566 | 99 | 35 | 4 | 151 | 247 | 135 | 227 | 1.25e-27 | 110 |
| Msa0456440 | AT1G54160.1 | 53.000 | 100 | 39 | 3 | 149 | 247 | 141 | 233 | 2.06e-25 | 104 |
| Msa0456440 | AT3G14020.2 | 53.061 | 98 | 39 | 4 | 154 | 247 | 132 | 226 | 8.45e-25 | 102 |
| Msa0456440 | AT3G14020.1 | 53.061 | 98 | 39 | 4 | 154 | 247 | 132 | 226 | 8.45e-25 | 102 |
| Msa0456440 | AT3G05690.1 | 45.833 | 120 | 47 | 4 | 150 | 263 | 106 | 213 | 1.51e-20 | 90.9 |
| Msa0456440 | AT3G05690.2 | 45.833 | 120 | 47 | 4 | 150 | 263 | 143 | 250 | 2.01e-20 | 91.3 |
| Msa0456440 | AT5G06510.1 | 29.915 | 234 | 109 | 10 | 27 | 256 | 13 | 195 | 1.08e-19 | 87.8 |
| Msa0456440 | AT5G06510.5 | 29.915 | 234 | 109 | 10 | 27 | 256 | 13 | 195 | 1.08e-19 | 87.8 |
| Msa0456440 | AT5G06510.2 | 29.915 | 234 | 109 | 10 | 27 | 256 | 13 | 195 | 1.08e-19 | 87.8 |
| Msa0456440 | AT5G06510.6 | 29.915 | 234 | 109 | 10 | 27 | 256 | 13 | 195 | 1.08e-19 | 87.8 |
| Msa0456440 | AT5G06510.4 | 45.045 | 111 | 43 | 5 | 149 | 256 | 5 | 100 | 1.12e-19 | 85.5 |
| Msa0456440 | AT5G06510.7 | 45.045 | 111 | 43 | 5 | 149 | 256 | 5 | 100 | 1.12e-19 | 85.5 |
| Msa0456440 | AT5G06510.3 | 45.045 | 111 | 43 | 5 | 149 | 256 | 51 | 146 | 4.62e-19 | 85.1 |
| Msa0456440 | AT1G72830.3 | 46.154 | 104 | 32 | 3 | 144 | 247 | 130 | 209 | 2.89e-17 | 81.6 |
Find 152 sgRNAs with CRISPR-Local
Find 281 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTATCAGGATCCATATTA+TGG | 0.185298 | 3_3:-50009722 | Msa0456440:CDS |
| GTATATCCTAGTGATATATT+TGG | 0.239472 | 3_3:-50008166 | Msa0456440:three_prime_UTR |
| TACCAAACTCTCTTGTTTCT+TGG | 0.260579 | 3_3:-50007869 | Msa0456440:three_prime_UTR |
| TTCCTCATTCATCTCACTAT+TGG | 0.285307 | 3_3:+50010303 | None:intergenic |
| CTCAAGGGGCAAAGGCATTC+TGG | 0.314340 | 3_3:+50009513 | None:intergenic |
| GTGGAAGAAGGGGACTGTTC+AGG | 0.315135 | 3_3:-50008294 | Msa0456440:CDS |
| GTTTGTTCTGTAAACTTAAC+TGG | 0.315292 | 3_3:-50007846 | Msa0456440:three_prime_UTR |
| ACCAAACTCTCTTGTTTCTT+GGG | 0.332279 | 3_3:-50007868 | Msa0456440:three_prime_UTR |
| GCATGAGGCACTCCTATAAA+AGG | 0.333358 | 3_3:+50009535 | None:intergenic |
| TATGCAATCTTCAAGGTATC+AGG | 0.338770 | 3_3:-50008325 | Msa0456440:CDS |
| ATATGCCGGCAAATCATTCT+TGG | 0.341646 | 3_3:-50008107 | Msa0456440:three_prime_UTR |
| TTCTAAAGCACCTGATTGAT+TGG | 0.345684 | 3_3:+50010243 | None:intergenic |
| CCAGACATTGTTTGCGCTAC+AGG | 0.346287 | 3_3:+50010394 | None:intergenic |
| AGCTTGTAGTTGCATGCATT+TGG | 0.347569 | 3_3:-50009803 | Msa0456440:intron |
| TGTTTAGCGTTCACATAAAC+AGG | 0.347626 | 3_3:+50009478 | None:intergenic |
| GTAGTCAACTTCAGCTGATA+TGG | 0.354835 | 3_3:-50007937 | Msa0456440:three_prime_UTR |
| CAAAGACTGGCCTTCCTCAT+TGG | 0.355087 | 3_3:+50010327 | None:intergenic |
| TCGCATGTTGGGAGAATTCC+AGG | 0.360834 | 3_3:+50008407 | None:intergenic |
| GCAAGAGGATCAAACGAAAA+TGG | 0.361215 | 3_3:-50008378 | Msa0456440:CDS |
| TTCTTCTTGATAGGAAATTA+CGG | 0.368800 | 3_3:-50010087 | Msa0456440:intron |
| GCATACCATTGTTGTTGTTA+TGG | 0.371144 | 3_3:+50008343 | None:intergenic |
| ACCCAAGAAACAAGAGAGTT+TGG | 0.375454 | 3_3:+50007867 | None:intergenic |
| ATGTGCTACAAATCCTTATC+AGG | 0.378434 | 3_3:-50009735 | Msa0456440:CDS |
| CATGCCTGCATCAAAAGAAT+TGG | 0.382636 | 3_3:+50009755 | None:intergenic |
| GTACCTTACCTTGGTTATCT+TGG | 0.390733 | 3_3:-50008136 | Msa0456440:three_prime_UTR |
| CTTGCATCTTGTCGCATGTT+GGG | 0.394811 | 3_3:+50008396 | None:intergenic |
| ATGGTGTGAATGATATAATA+TGG | 0.403792 | 3_3:-50008067 | Msa0456440:three_prime_UTR |
| CTTATCAGGATCCATATTAT+GGG | 0.407754 | 3_3:-50009721 | Msa0456440:CDS |
| TCGCAATCAATTAGTTCATC+TGG | 0.408092 | 3_3:-50008462 | Msa0456440:CDS |
| TTGATTTGCAGTTTCCGACT+TGG | 0.410271 | 3_3:+50010492 | None:intergenic |
| GAAAACTGATGGTGAGGCCT+CGG | 0.419006 | 3_3:-50008517 | Msa0456440:CDS |
| GAGGCCTCGGGAAAGGATAA+TGG | 0.429841 | 3_3:-50008504 | Msa0456440:CDS |
| AAAAGCCAAGAATGATTTGC+CGG | 0.433683 | 3_3:+50008102 | None:intergenic |
| CCTGTAGCGCAAACAATGTC+TGG | 0.435636 | 3_3:-50010394 | Msa0456440:CDS |
| ACAATCAAGAGAGGATGAAT+TGG | 0.445592 | 3_3:+50010369 | None:intergenic |
| TCCTCTCTTGATTGTCCCAA+TGG | 0.445841 | 3_3:-50010361 | Msa0456440:CDS |
| GGGGAGAAGAATGGTGATTG+GGG | 0.447626 | 3_3:-50008043 | Msa0456440:three_prime_UTR |
| TCCTCCCATGCAGGAAGGGG+GGG | 0.447856 | 3_3:+50008209 | None:intergenic |
| TGTCTAGATTCATGAAGATA+TGG | 0.448950 | 3_3:+50008588 | None:intergenic |
| CCATAATATGGATCCTGATA+AGG | 0.451848 | 3_3:+50009722 | None:intergenic |
| CTTCAGACTCTGCGGAAACC+TGG | 0.454407 | 3_3:-50008425 | Msa0456440:CDS |
| TGGTGTGAATGATATAATAT+GGG | 0.455479 | 3_3:-50008066 | Msa0456440:three_prime_UTR |
| TCTAAAGCACCTGATTGATT+GGG | 0.457401 | 3_3:+50010244 | None:intergenic |
| CCTCTGCGATGCCTCGTTCG+AGG | 0.460703 | 3_3:+50008251 | None:intergenic |
| TCTTGCATCTTGTCGCATGT+TGG | 0.462937 | 3_3:+50008395 | None:intergenic |
| TGGAAGAAGGGGACTGTTCA+GGG | 0.467131 | 3_3:-50008293 | Msa0456440:CDS |
| TTGAGAAGGGCAAGAGGCAC+CGG | 0.467176 | 3_3:-50008555 | Msa0456440:CDS |
| CCTGCTGCTCCCAATCAATC+AGG | 0.469165 | 3_3:-50010253 | Msa0456440:intron |
| AAAAGAATTGGAAGAATACT+AGG | 0.470404 | 3_3:+50009767 | None:intergenic |
| CCTGATTGATTGGGAGCAGC+AGG | 0.471231 | 3_3:+50010253 | None:intergenic |
| ATTGAAATTGAAAATTCAAA+GGG | 0.474297 | 3_3:+50011443 | None:intergenic |
| TGATTTGCAGTTTCCGACTT+GGG | 0.476254 | 3_3:+50010493 | None:intergenic |
| AATGCCTTTGCCCCTTGAGA+TGG | 0.476507 | 3_3:-50009509 | Msa0456440:CDS |
| AATTGAAATTGAAAATTCAA+AGG | 0.477666 | 3_3:+50011442 | None:intergenic |
| GTCTTCGCCTCAGAATTCCT+TGG | 0.480874 | 3_3:+50009452 | None:intergenic |
| ATTGATTGCGACGACAAGAC+TGG | 0.480972 | 3_3:+50008474 | None:intergenic |
| GCTGATATGGATGGATGGTC+AGG | 0.495169 | 3_3:-50007924 | Msa0456440:three_prime_UTR |
| CTATCCTCCCATGCAGGAAG+GGG | 0.497288 | 3_3:+50008206 | None:intergenic |
| ACTCCTCAGCTGGAACTTGT+TGG | 0.498120 | 3_3:-50010000 | Msa0456440:CDS |
| GTAGTTGCATGCATTTGGAC+TGG | 0.498409 | 3_3:-50009798 | Msa0456440:intron |
| TCGGGAAAGGATAATGGCTC+TGG | 0.498937 | 3_3:-50008498 | Msa0456440:CDS |
| TGAAAGAGAGAGAAAGAGAG+AGG | 0.501206 | 3_3:-50011484 | Msa0456440:five_prime_UTR |
| ATTGGATTCTGAATCACCAT+TGG | 0.502864 | 3_3:+50010345 | None:intergenic |
| CAGGGTGAAAGAGTGGAAGA+AGG | 0.503255 | 3_3:-50008306 | Msa0456440:CDS |
| TTGGATTCTGAATCACCATT+GGG | 0.505994 | 3_3:+50010346 | None:intergenic |
| GTTCTGTAAACTTAACTGGT+TGG | 0.508613 | 3_3:-50007842 | Msa0456440:three_prime_UTR |
| TTTCTTTGCAAATCGTCCTC+CGG | 0.509061 | 3_3:+50008536 | None:intergenic |
| TTGCATGCATTTGGACTGGA+TGG | 0.510300 | 3_3:-50009794 | Msa0456440:CDS |
| AAAACTGATGGTGAGGCCTC+GGG | 0.514204 | 3_3:-50008516 | Msa0456440:CDS |
| GAACCTTGGTGGCGTGGTGT+TGG | 0.516801 | 3_3:-50010424 | Msa0456440:CDS |
| CCTCACACAGACTCCTCAGC+TGG | 0.517659 | 3_3:-50010010 | Msa0456440:CDS |
| GAAGCTCATAAAATCTAGAA+AGG | 0.519482 | 3_3:-50009401 | Msa0456440:intron |
| GTGCTAAAGCAGAGCTTGAA+AGG | 0.520912 | 3_3:-50009423 | Msa0456440:CDS |
| ACCATTGTTGTTGTTATGGT+AGG | 0.521132 | 3_3:+50008347 | None:intergenic |
| AGGGTGAAAGAGTGGAAGAA+GGG | 0.525419 | 3_3:-50008305 | Msa0456440:CDS |
| ACAATGGTATGCAATCTTCA+AGG | 0.528717 | 3_3:-50008332 | Msa0456440:CDS |
| TGATGGTGAGGCCTCGGGAA+AGG | 0.531610 | 3_3:-50008511 | Msa0456440:CDS |
| GTGGTGTTTATTCTGAACCT+TGG | 0.535143 | 3_3:-50010438 | Msa0456440:CDS |
| GAAAGAGAGAGAAAGAGAGA+GGG | 0.539822 | 3_3:-50011483 | Msa0456440:five_prime_UTR |
| CAGGTTCTTGAGCCATCTCA+AGG | 0.541180 | 3_3:+50009497 | None:intergenic |
| AGCTTATCCTCACCAGCCGT+TGG | 0.544838 | 3_3:-50009687 | Msa0456440:intron |
| ATCTATCCTCCCATGCAGGA+AGG | 0.546592 | 3_3:+50008204 | None:intergenic |
| TCTCACTATTGGACAAAGAC+TGG | 0.550556 | 3_3:+50010314 | None:intergenic |
| TCTATCCTCCCATGCAGGAA+GGG | 0.550690 | 3_3:+50008205 | None:intergenic |
| ATCCTCCCATGCAGGAAGGG+GGG | 0.551872 | 3_3:+50008208 | None:intergenic |
| CAGCATCTATCCTCCCATGC+AGG | 0.556616 | 3_3:+50008200 | None:intergenic |
| GACATCAGCATGCTTTGAGA+AGG | 0.559068 | 3_3:-50008569 | Msa0456440:CDS |
| GGTGAATGAGTACCTTACCT+TGG | 0.559324 | 3_3:-50008145 | Msa0456440:three_prime_UTR |
| TGAGCCATCTCAAGGGGCAA+AGG | 0.560137 | 3_3:+50009505 | None:intergenic |
| CATTCACCAAATATATCACT+AGG | 0.561969 | 3_3:+50008160 | None:intergenic |
| GGGAGGATAGATGCTGAGGT+TGG | 0.566065 | 3_3:-50008193 | Msa0456440:three_prime_UTR |
| CAGGTTTCCGCAGAGTCTGA+AGG | 0.567519 | 3_3:+50008426 | None:intergenic |
| GATCCTCATTCCTTTCAGCC+CGG | 0.568473 | 3_3:-50010460 | Msa0456440:CDS |
| ATAAACACCACCGGGCTGAA+AGG | 0.570819 | 3_3:+50010450 | None:intergenic |
| TATCCTCCCATGCAGGAAGG+GGG | 0.572062 | 3_3:+50008207 | None:intergenic |
| CTGCCAAGATAACCAAGGTA+AGG | 0.572997 | 3_3:+50008133 | None:intergenic |
| ATGCACTTACCTGAGGAAGA+AGG | 0.575777 | 3_3:+50011371 | None:intergenic |
| TCACATACCAACGGCTGGTG+AGG | 0.579630 | 3_3:+50009680 | None:intergenic |
| AAGGTATCAGGGTGAAAGAG+TGG | 0.579884 | 3_3:-50008313 | Msa0456440:CDS |
| GTGTTTATTCTGAACCTTGG+TGG | 0.581264 | 3_3:-50010435 | Msa0456440:CDS |
| AGGTTCAGAATAAACACCAC+CGG | 0.582494 | 3_3:+50010441 | None:intergenic |
| GGAAGATGATGATGCTGCTA+AGG | 0.583652 | 3_3:-50010284 | Msa0456440:CDS |
| TCAACTTCAGCTGATATGGA+TGG | 0.586528 | 3_3:-50007933 | Msa0456440:three_prime_UTR |
| TAATGTCACATACCAACGGC+TGG | 0.588332 | 3_3:+50009675 | None:intergenic |
| TATTCTGAACCTTGGTGGCG+TGG | 0.589853 | 3_3:-50010430 | Msa0456440:CDS |
| TGCAAAGAAAACTGATGGTG+AGG | 0.591393 | 3_3:-50008523 | Msa0456440:CDS |
| CTTCAGCTGATATGGATGGA+TGG | 0.591845 | 3_3:-50007929 | Msa0456440:three_prime_UTR |
| GGATCAAACGAAAATGGTGG+TGG | 0.592838 | 3_3:-50008372 | Msa0456440:CDS |
| GTGTGAATGATATAATATGG+GGG | 0.597919 | 3_3:-50008064 | Msa0456440:three_prime_UTR |
| ATGCAATCTTCAAGGTATCA+GGG | 0.599536 | 3_3:-50008324 | Msa0456440:CDS |
| GGAAATTACGGACAAGAACA+AGG | 0.600249 | 3_3:-50010075 | Msa0456440:CDS |
| TTATCAGGATCCATATTATG+GGG | 0.600718 | 3_3:-50009720 | Msa0456440:CDS |
| TATCTTGGCAGTATATATGC+CGG | 0.601362 | 3_3:-50008121 | Msa0456440:three_prime_UTR |
| AGGTTCTTGAGCCATCTCAA+GGG | 0.605218 | 3_3:+50009498 | None:intergenic |
| CCTCATTCCTTTCAGCCCGG+TGG | 0.605967 | 3_3:-50010457 | Msa0456440:CDS |
| CATGCTTTGAGAAGGGCAAG+AGG | 0.607747 | 3_3:-50008561 | Msa0456440:CDS |
| GGTTCTTGAGCCATCTCAAG+GGG | 0.609159 | 3_3:+50009499 | None:intergenic |
| GTCCAATAGTGAGATGAATG+AGG | 0.611764 | 3_3:-50010305 | Msa0456440:CDS |
| GGTGTGAATGATATAATATG+GGG | 0.614073 | 3_3:-50008065 | Msa0456440:three_prime_UTR |
| GATTCAGAATCCAATGAGGA+AGG | 0.616324 | 3_3:-50010337 | Msa0456440:CDS |
| ACATCAGCATGCTTTGAGAA+GGG | 0.618856 | 3_3:-50008568 | Msa0456440:CDS |
| TGCATGCATTTGGACTGGAT+GGG | 0.623084 | 3_3:-50009793 | Msa0456440:CDS |
| GACTGTTCAGGGCAGCTACG+TGG | 0.623934 | 3_3:-50008282 | Msa0456440:CDS |
| TCCTACCATAACAACAACAA+TGG | 0.624469 | 3_3:-50008348 | Msa0456440:CDS |
| CGATTTGCAAAGAAAACTGA+TGG | 0.624607 | 3_3:-50008528 | Msa0456440:CDS |
| CCACCGGGCTGAAAGGAATG+AGG | 0.626610 | 3_3:+50010457 | None:intergenic |
| TGAGGATATGCAACCCAAGT+CGG | 0.626703 | 3_3:-50010506 | Msa0456440:exon |
| GGCAAAGGCATTCTGGCATG+AGG | 0.634023 | 3_3:+50009520 | None:intergenic |
| AGAAGGGCAAGAGGCACCGG+AGG | 0.637214 | 3_3:-50008552 | Msa0456440:CDS |
| TGTGAATGATATAATATGGG+GGG | 0.639434 | 3_3:-50008063 | Msa0456440:three_prime_UTR |
| GGGTGAAAGAGTGGAAGAAG+GGG | 0.642943 | 3_3:-50008304 | Msa0456440:CDS |
| CCAGCTGAGGAGTCTGTGTG+AGG | 0.649225 | 3_3:+50010010 | None:intergenic |
| GGTTCAGAATAAACACCACC+GGG | 0.650774 | 3_3:+50010442 | None:intergenic |
| AACAATACCAAGGAATTCTG+AGG | 0.651910 | 3_3:-50009459 | Msa0456440:CDS |
| AGAGCCATTATCCTTTCCCG+AGG | 0.653284 | 3_3:+50008500 | None:intergenic |
| ACCATTGGGACAATCAAGAG+AGG | 0.663692 | 3_3:+50010360 | None:intergenic |
| TGAGGCACTCCTATAAAAGG+AGG | 0.667807 | 3_3:+50009538 | None:intergenic |
| TGGAAGCATCTCCTCGAACG+AGG | 0.669556 | 3_3:-50008262 | Msa0456440:CDS |
| AAGGAATGAGGATCTGACCT+CGG | 0.671701 | 3_3:+50010469 | None:intergenic |
| GCATGGGAGGATAGATGCTG+AGG | 0.673206 | 3_3:-50008197 | Msa0456440:three_prime_UTR |
| TGACCAACAAGTTCCAGCTG+AGG | 0.675734 | 3_3:+50009997 | None:intergenic |
| TTGAAATTGAAAATTCAAAG+GGG | 0.682647 | 3_3:+50011444 | None:intergenic |
| GTGAATGATATAATATGGGG+GGG | 0.684869 | 3_3:-50008062 | Msa0456440:three_prime_UTR |
| TATCAGGATCCATATTATGG+GGG | 0.690554 | 3_3:-50009719 | Msa0456440:CDS |
| AGAGGATCAAACGAAAATGG+TGG | 0.692972 | 3_3:-50008375 | Msa0456440:CDS |
| GTGAACGCTAAACAATACCA+AGG | 0.697540 | 3_3:-50009469 | Msa0456440:CDS |
| AACATGCGACAAGATGCAAG+AGG | 0.706089 | 3_3:-50008393 | Msa0456440:CDS |
| TATCCAACACCACGCCACCA+AGG | 0.707510 | 3_3:+50010421 | None:intergenic |
| CGGAAACTGCAAATCAACCG+AGG | 0.712762 | 3_3:-50010486 | Msa0456440:CDS |
| TGGTGATTCAGAATCCAATG+AGG | 0.715370 | 3_3:-50010341 | Msa0456440:CDS |
| CCTCGAACGAGGCATCGCAG+AGG | 0.718093 | 3_3:-50008251 | Msa0456440:CDS |
| ATATACTGCCAAGATAACCA+AGG | 0.721400 | 3_3:+50008128 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTTACTAACAATTAAAT+AGG | - | chr3_3:50009094-50009113 | Msa0456440:intron | 10.0% |
| !! | TATTTACTAACAATTAAATA+GGG | - | chr3_3:50009095-50009114 | Msa0456440:intron | 10.0% |
| !!! | TATAAATGTTTCTAATATAT+AGG | - | chr3_3:50010143-50010162 | Msa0456440:intron | 10.0% |
| !!! | TTTTACATTTTTTTTTTTGA+AGG | + | chr3_3:50010292-50010311 | None:intergenic | 10.0% |
| !! | ATTGAAATTGAAAATTCAAA+GGG | + | chr3_3:50007864-50007883 | None:intergenic | 15.0% |
| !! | AATTGAAATTGAAAATTCAA+AGG | + | chr3_3:50007865-50007884 | None:intergenic | 15.0% |
| !! | AAGTATATAAAAGTTAACAT+GGG | - | chr3_3:50008607-50008626 | Msa0456440:intron | 15.0% |
| !! | ATTTACTAACAATTAAATAG+GGG | - | chr3_3:50009096-50009115 | Msa0456440:intron | 15.0% |
| !!! | TATTTTTTTTTCTTCTTGAT+AGG | - | chr3_3:50009208-50009227 | Msa0456440:intron | 15.0% |
| !! | AAAAAATAACAATAAAGCTT+AGG | + | chr3_3:50009351-50009370 | None:intergenic | 15.0% |
| !! | TTGAAATTGAAAATTCAAAG+GGG | + | chr3_3:50007863-50007882 | None:intergenic | 20.0% |
| !!! | TTTTTTTCAATACGAAAAAG+AGG | - | chr3_3:50008143-50008162 | Msa0456440:three_prime_UTR | 20.0% |
| !! | AGATTTACAACTCTAATATA+TGG | - | chr3_3:50008582-50008601 | Msa0456440:CDS | 20.0% |
| !! | CAAGTATATAAAAGTTAACA+TGG | - | chr3_3:50008606-50008625 | Msa0456440:intron | 20.0% |
| !!! | ACTATACTTGTAATTTTTGT+AGG | - | chr3_3:50008771-50008790 | Msa0456440:intron | 20.0% |
| !!! | CTATACTTGTAATTTTTGTA+GGG | - | chr3_3:50008772-50008791 | Msa0456440:intron | 20.0% |
| !!! | ACCAAATACTATTGATTTAA+AGG | - | chr3_3:50009172-50009191 | Msa0456440:intron | 20.0% |
| !!! | TCAAATCAGTAATTTTATTC+TGG | - | chr3_3:50009421-50009440 | Msa0456440:CDS | 20.0% |
| !! | ATCAAGAAAATAGAACAAAA+TGG | + | chr3_3:50009681-50009700 | None:intergenic | 20.0% |
| !!! | TGTTCTATTTTCTTGATTAA+TGG | - | chr3_3:50009684-50009703 | Msa0456440:intron | 20.0% |
| !! | TCTTGATTAATGGTAATATT+TGG | - | chr3_3:50009694-50009713 | Msa0456440:CDS | 20.0% |
| !!! | GGATATTTGTCTTTTTTATA+TGG | - | chr3_3:50009976-50009995 | Msa0456440:intron | 20.0% |
| !! | ACTGCTTAAAAAAAAATCAA+AGG | + | chr3_3:50010183-50010202 | None:intergenic | 20.0% |
| !! | CATCTAATTTAATGTTTAGA+TGG | - | chr3_3:50010355-50010374 | Msa0456440:CDS | 20.0% |
| !!! | TTTACTACATAAACTTTTTG+TGG | - | chr3_3:50010536-50010555 | Msa0456440:intron | 20.0% |
| !!! | TTACTACATAAACTTTTTGT+GGG | - | chr3_3:50010537-50010556 | Msa0456440:intron | 20.0% |
| ! | ATCATAAGACTCAAAAATCT+AGG | - | chr3_3:50007900-50007919 | Msa0456440:three_prime_UTR | 25.0% |
| ! | TCATAAGACTCAAAAATCTA+GGG | - | chr3_3:50007901-50007920 | Msa0456440:three_prime_UTR | 25.0% |
| ! | TTGTAACTCTTGATTGAATA+AGG | - | chr3_3:50008635-50008654 | Msa0456440:intron | 25.0% |
| ! | GCCTTTAAATCAATAGTATT+TGG | + | chr3_3:50009176-50009195 | None:intergenic | 25.0% |
| ! | TTCTTCTTGATAGGAAATTA+CGG | - | chr3_3:50009217-50009236 | Msa0456440:intron | 25.0% |
| ! | ATTCGTGCATATAATTTCAA+TGG | - | chr3_3:50009461-50009480 | Msa0456440:CDS | 25.0% |
| ! | AAAAGAATTGGAAGAATACT+AGG | + | chr3_3:50009540-50009559 | None:intergenic | 25.0% |
| !! | TATGATATTTTCCTTTCCTT+TGG | - | chr3_3:50009954-50009973 | Msa0456440:intron | 25.0% |
| !! | ATGATATTTTCCTTTCCTTT+GGG | - | chr3_3:50009955-50009974 | Msa0456440:intron | 25.0% |
| ! | AAAAAAGACAAATATCCCAA+AGG | + | chr3_3:50009973-50009992 | None:intergenic | 25.0% |
| !!! | TGTCTTTTTTATATGGAGAA+AGG | - | chr3_3:50009983-50010002 | Msa0456440:intron | 25.0% |
| ! | AAAAAAAATCAAAGGCTCTA+TGG | + | chr3_3:50010175-50010194 | None:intergenic | 25.0% |
| ! | GTATATCCTAGTGATATATT+TGG | - | chr3_3:50011138-50011157 | Msa0456440:intron | 25.0% |
| ! | ATGGTGTGAATGATATAATA+TGG | - | chr3_3:50011237-50011256 | Msa0456440:intron | 25.0% |
| ! | TGGTGTGAATGATATAATAT+GGG | - | chr3_3:50011238-50011257 | Msa0456440:intron | 25.0% |
| ! | CAAAAATGAGAAAAGATTGA+AGG | + | chr3_3:50011325-50011344 | None:intergenic | 25.0% |
| ! | TCGTTTTCTGATGCTTATTA+GGG | - | chr3_3:50008000-50008019 | Msa0456440:three_prime_UTR | 30.0% |
| AATCACAGAATTGTTTGACT+CGG | + | chr3_3:50008073-50008092 | None:intergenic | 30.0% | |
| TAGGTGAAAGGTAGAAAATT+GGG | - | chr3_3:50008198-50008217 | Msa0456440:three_prime_UTR | 30.0% | |
| CATAAGGCATAACAGAATTT+CGG | + | chr3_3:50008292-50008311 | None:intergenic | 30.0% | |
| ACAGAATCACATGAAACATA+AGG | + | chr3_3:50008308-50008327 | None:intergenic | 30.0% | |
| !!! | ACAACTTTTCAGGTCATATT+TGG | + | chr3_3:50008335-50008354 | None:intergenic | 30.0% |
| AAATATGACCTGAAAAGTTG+TGG | - | chr3_3:50008334-50008353 | Msa0456440:CDS | 30.0% | |
| TTCCACTTAGAAATCAAACT+CGG | - | chr3_3:50008459-50008478 | Msa0456440:CDS | 30.0% | |
| GATCATAATCAATTTCACTG+TGG | - | chr3_3:50008681-50008700 | Msa0456440:intron | 30.0% | |
| ! | CCAGTTTTCTTTTAGCATAA+GGG | - | chr3_3:50008731-50008750 | Msa0456440:intron | 30.0% |
| TAGGGGAAAAATAAACAGAT+TGG | - | chr3_3:50009113-50009132 | Msa0456440:intron | 30.0% | |
| TAACAATAAAGCTTAGGCAA+AGG | + | chr3_3:50009345-50009364 | None:intergenic | 30.0% | |
| CTTAACAACTTGAAAGCAAT+TGG | + | chr3_3:50009381-50009400 | None:intergenic | 30.0% | |
| CTTATCAGGATCCATATTAT+GGG | - | chr3_3:50009583-50009602 | Msa0456440:intron | 30.0% | |
| TTATCAGGATCCATATTATG+GGG | - | chr3_3:50009584-50009603 | Msa0456440:intron | 30.0% | |
| AGATTAATGTCACATACCAA+CGG | + | chr3_3:50009636-50009655 | None:intergenic | 30.0% | |
| ! | TTAATCTGTTACTTGCTTCA+AGG | - | chr3_3:50009649-50009668 | Msa0456440:intron | 30.0% |
| GAAGCTCATAAAATCTAGAA+AGG | - | chr3_3:50009903-50009922 | Msa0456440:intron | 30.0% | |
| GTCGTATGAAATTGTGTAAA+AGG | + | chr3_3:50010019-50010038 | None:intergenic | 30.0% | |
| ! | ACAGTTGCTTAGTCTTTATA+TGG | - | chr3_3:50010037-50010056 | Msa0456440:CDS | 30.0% |
| CCATTATTATGCTGTATTGA+CGG | - | chr3_3:50010217-50010236 | Msa0456440:intron | 30.0% | |
| ! | TTGTTGCTTGTTTCAAAAGT+GGG | + | chr3_3:50010335-50010354 | None:intergenic | 30.0% |
| TGCACAAATGTCAAGAAAAA+TGG | - | chr3_3:50010483-50010502 | Msa0456440:CDS | 30.0% | |
| TGTCTAGATTCATGAAGATA+TGG | + | chr3_3:50010719-50010738 | None:intergenic | 30.0% | |
| CATTCACCAAATATATCACT+AGG | + | chr3_3:50011147-50011166 | None:intergenic | 30.0% | |
| GGTGTGAATGATATAATATG+GGG | - | chr3_3:50011239-50011258 | Msa0456440:intron | 30.0% | |
| GTGTGAATGATATAATATGG+GGG | - | chr3_3:50011240-50011259 | Msa0456440:intron | 30.0% | |
| TGTGAATGATATAATATGGG+GGG | - | chr3_3:50011241-50011260 | Msa0456440:intron | 30.0% | |
| !! | CATTTTGTACAGAGTTTTAG+TGG | - | chr3_3:50011345-50011364 | Msa0456440:intron | 30.0% |
| GTTTGTTCTGTAAACTTAAC+TGG | - | chr3_3:50011458-50011477 | Msa0456440:five_prime_UTR | 30.0% | |
| !!! | TTCTTTTTTCCTTCTTCCTC+AGG | - | chr3_3:50007924-50007943 | Msa0456440:three_prime_UTR | 35.0% |
| !! | GTCGTTTTCTGATGCTTATT+AGG | - | chr3_3:50007999-50008018 | Msa0456440:three_prime_UTR | 35.0% |
| TCTGATGCTTATTAGGGATT+AGG | - | chr3_3:50008006-50008025 | Msa0456440:three_prime_UTR | 35.0% | |
| CTGATGCTTATTAGGGATTA+GGG | - | chr3_3:50008007-50008026 | Msa0456440:three_prime_UTR | 35.0% | |
| GTTCTGTGTGAATTCTTGTT+TGG | - | chr3_3:50008102-50008121 | Msa0456440:three_prime_UTR | 35.0% | |
| CTAGGTTTGATTGTGAATGT+AGG | - | chr3_3:50008179-50008198 | Msa0456440:three_prime_UTR | 35.0% | |
| TGATTGTGAATGTAGGTGAA+AGG | - | chr3_3:50008186-50008205 | Msa0456440:three_prime_UTR | 35.0% | |
| GTAGGTGAAAGGTAGAAAAT+TGG | - | chr3_3:50008197-50008216 | Msa0456440:three_prime_UTR | 35.0% | |
| TCTGTTAAACAGAGCTTCAT+AGG | - | chr3_3:50008247-50008266 | Msa0456440:CDS | 35.0% | |
| ! | TGTTACAGTTTTTGTTCCTC+CGG | - | chr3_3:50008362-50008381 | Msa0456440:CDS | 35.0% |
| TCCACTTAGAAATCAAACTC+GGG | - | chr3_3:50008460-50008479 | Msa0456440:CDS | 35.0% | |
| CTTCCAAACAATTCGTCTTT+AGG | - | chr3_3:50008485-50008504 | Msa0456440:CDS | 35.0% | |
| CTACCTAAAGACGAATTGTT+TGG | + | chr3_3:50008491-50008510 | None:intergenic | 35.0% | |
| TACAACTATAACCGAGTGAT+TGG | + | chr3_3:50008534-50008553 | None:intergenic | 35.0% | |
| AATCACTCGGTTATAGTTGT+AGG | - | chr3_3:50008533-50008552 | Msa0456440:CDS | 35.0% | |
| ! | GCCAGTTTTCTTTTAGCATA+AGG | - | chr3_3:50008730-50008749 | Msa0456440:intron | 35.0% |
| CCCTTATGCTAAAAGAAAAC+TGG | + | chr3_3:50008734-50008753 | None:intergenic | 35.0% | |
| ! | GTAATTTTTGTAGGGATCTG+AGG | - | chr3_3:50008780-50008799 | Msa0456440:intron | 35.0% |
| ACAATCAAGAGAGGATGAAT+TGG | + | chr3_3:50008938-50008957 | None:intergenic | 35.0% | |
| TTGGATTCTGAATCACCATT+GGG | + | chr3_3:50008961-50008980 | None:intergenic | 35.0% | |
| ATTGGATTCTGAATCACCAT+TGG | + | chr3_3:50008962-50008981 | None:intergenic | 35.0% | |
| TTCCTCATTCATCTCACTAT+TGG | + | chr3_3:50009004-50009023 | None:intergenic | 35.0% | |
| ! | TCTAAAGCACCTGATTGATT+GGG | + | chr3_3:50009063-50009082 | None:intergenic | 35.0% |
| !! | TTCTAAAGCACCTGATTGAT+TGG | + | chr3_3:50009064-50009083 | None:intergenic | 35.0% |
| ! | TCTTCCAATTCTTTTGATGC+AGG | - | chr3_3:50009545-50009564 | Msa0456440:CDS | 35.0% |
| ATGTGCTACAAATCCTTATC+AGG | - | chr3_3:50009569-50009588 | Msa0456440:intron | 35.0% | |
| CCATAATATGGATCCTGATA+AGG | + | chr3_3:50009585-50009604 | None:intergenic | 35.0% | |
| CCTTATCAGGATCCATATTA+TGG | - | chr3_3:50009582-50009601 | Msa0456440:intron | 35.0% | |
| TATCAGGATCCATATTATGG+GGG | - | chr3_3:50009585-50009604 | Msa0456440:intron | 35.0% | |
| ! | TAGGGATATCCTCCTTTTAT+AGG | - | chr3_3:50009757-50009776 | Msa0456440:CDS | 35.0% |
| TGTTTAGCGTTCACATAAAC+AGG | + | chr3_3:50009829-50009848 | None:intergenic | 35.0% | |
| AACAATACCAAGGAATTCTG+AGG | - | chr3_3:50009845-50009864 | Msa0456440:intron | 35.0% | |
| AGACAAATATCCCAAAGGAA+AGG | + | chr3_3:50009968-50009987 | None:intergenic | 35.0% | |
| CCGTCAATACAGCATAATAA+TGG | + | chr3_3:50010220-50010239 | None:intergenic | 35.0% | |
| ! | GTTGTTGCTTGTTTCAAAAG+TGG | + | chr3_3:50010336-50010355 | None:intergenic | 35.0% |
| TATCCTTGTCTGCAAGAATT+AGG | - | chr3_3:50010412-50010431 | Msa0456440:CDS | 35.0% | |
| AAAAATAAGCTCTCAGATGC+AGG | - | chr3_3:50010440-50010459 | Msa0456440:CDS | 35.0% | |
| ACTACATACACTGGCAAAAT+TGG | + | chr3_3:50010570-50010589 | None:intergenic | 35.0% | |
| ATGAATGTGACTACATACAC+TGG | + | chr3_3:50010579-50010598 | None:intergenic | 35.0% | |
| GGACTCATGCAAGTAAAAAA+TGG | + | chr3_3:50010644-50010663 | None:intergenic | 35.0% | |
| GTCTCACTTGAAACATATTC+TGG | + | chr3_3:50010665-50010684 | None:intergenic | 35.0% | |
| CGATTTGCAAAGAAAACTGA+TGG | - | chr3_3:50010776-50010795 | Msa0456440:intron | 35.0% | |
| TCGCAATCAATTAGTTCATC+TGG | - | chr3_3:50010842-50010861 | Msa0456440:intron | 35.0% | |
| TCCTACCATAACAACAACAA+TGG | - | chr3_3:50010956-50010975 | Msa0456440:intron | 35.0% | |
| ! | ACCATTGTTGTTGTTATGGT+AGG | + | chr3_3:50010960-50010979 | None:intergenic | 35.0% |
| ! | GCATACCATTGTTGTTGTTA+TGG | + | chr3_3:50010964-50010983 | None:intergenic | 35.0% |
| ACAATGGTATGCAATCTTCA+AGG | - | chr3_3:50010972-50010991 | Msa0456440:intron | 35.0% | |
| ! | TATGCAATCTTCAAGGTATC+AGG | - | chr3_3:50010979-50010998 | Msa0456440:intron | 35.0% |
| ! | ATGCAATCTTCAAGGTATCA+GGG | - | chr3_3:50010980-50010999 | Msa0456440:intron | 35.0% |
| ATATACTGCCAAGATAACCA+AGG | + | chr3_3:50011179-50011198 | None:intergenic | 35.0% | |
| TATCTTGGCAGTATATATGC+CGG | - | chr3_3:50011183-50011202 | Msa0456440:intron | 35.0% | |
| ! | AAAAGCCAAGAATGATTTGC+CGG | + | chr3_3:50011205-50011224 | None:intergenic | 35.0% |
| ! | GGCTTTTGTTCTTCTGTTAA+TGG | - | chr3_3:50011218-50011237 | Msa0456440:intron | 35.0% |
| GTGAATGATATAATATGGGG+GGG | - | chr3_3:50011242-50011261 | Msa0456440:intron | 35.0% | |
| ! | TACCAAACTCTCTTGTTTCT+TGG | - | chr3_3:50011435-50011454 | Msa0456440:five_prime_UTR | 35.0% |
| ! | ACCAAACTCTCTTGTTTCTT+GGG | - | chr3_3:50011436-50011455 | Msa0456440:five_prime_UTR | 35.0% |
| GTTCTGTAAACTTAACTGGT+TGG | - | chr3_3:50011462-50011481 | Msa0456440:five_prime_UTR | 35.0% | |
| TGAAAGAGAGAGAAAGAGAG+AGG | - | chr3_3:50007820-50007839 | Msa0456440:three_prime_UTR | 40.0% | |
| GAAAGAGAGAGAAAGAGAGA+GGG | - | chr3_3:50007821-50007840 | Msa0456440:three_prime_UTR | 40.0% | |
| ! | AGGGTTTTCGTGCTGAATTT+TGG | - | chr3_3:50008026-50008045 | Msa0456440:three_prime_UTR | 40.0% |
| ! | GGGTTTTCGTGCTGAATTTT+GGG | - | chr3_3:50008027-50008046 | Msa0456440:three_prime_UTR | 40.0% |
| !! | AGAATTGTTTGACTCGGACT+CGG | + | chr3_3:50008067-50008086 | None:intergenic | 40.0% |
| ! | AGAGGATTTTTCTCTGAGCT+AGG | - | chr3_3:50008161-50008180 | Msa0456440:three_prime_UTR | 40.0% |
| AGAGCTTCATAGGTAGTGTA+CGG | - | chr3_3:50008257-50008276 | Msa0456440:CDS | 40.0% | |
| ! | ACACTATGCCACAACTTTTC+AGG | + | chr3_3:50008345-50008364 | None:intergenic | 40.0% |
| ! | TTTTTGTTCCTCCGGTTCTT+AGG | - | chr3_3:50008370-50008389 | Msa0456440:CDS | 40.0% |
| GCTGATAGGTAAGTAAAGTC+TGG | - | chr3_3:50008419-50008438 | Msa0456440:CDS | 40.0% | |
| ! | ACCCGAGTTTGATTTCTAAG+TGG | + | chr3_3:50008464-50008483 | None:intergenic | 40.0% |
| !! | CTGTGGATTACTGCATTTTG+TGG | - | chr3_3:50008698-50008717 | Msa0456440:intron | 40.0% |
| ! | TGATTTGCAGTTTCCGACTT+GGG | + | chr3_3:50008814-50008833 | None:intergenic | 40.0% |
| !! | TTGATTTGCAGTTTCCGACT+TGG | + | chr3_3:50008815-50008834 | None:intergenic | 40.0% |
| AGGTTCAGAATAAACACCAC+CGG | + | chr3_3:50008866-50008885 | None:intergenic | 40.0% | |
| GTGGTGTTTATTCTGAACCT+TGG | - | chr3_3:50008866-50008885 | Msa0456440:intron | 40.0% | |
| GTGTTTATTCTGAACCTTGG+TGG | - | chr3_3:50008869-50008888 | Msa0456440:intron | 40.0% | |
| TGGTGATTCAGAATCCAATG+AGG | - | chr3_3:50008963-50008982 | Msa0456440:intron | 40.0% | |
| GATTCAGAATCCAATGAGGA+AGG | - | chr3_3:50008967-50008986 | Msa0456440:intron | 40.0% | |
| TCTCACTATTGGACAAAGAC+TGG | + | chr3_3:50008993-50009012 | None:intergenic | 40.0% | |
| GTCCAATAGTGAGATGAATG+AGG | - | chr3_3:50008999-50009018 | Msa0456440:intron | 40.0% | |
| GGAAATTACGGACAAGAACA+AGG | - | chr3_3:50009229-50009248 | Msa0456440:intron | 40.0% | |
| AGCTTGTAGTTGCATGCATT+TGG | - | chr3_3:50009501-50009520 | Msa0456440:CDS | 40.0% | |
| CATGCCTGCATCAAAAGAAT+TGG | + | chr3_3:50009552-50009571 | None:intergenic | 40.0% | |
| GTGAACGCTAAACAATACCA+AGG | - | chr3_3:50009835-50009854 | Msa0456440:intron | 40.0% | |
| TATATGCGCTGTTGTCTGTA+AGG | - | chr3_3:50010114-50010133 | Msa0456440:intron | 40.0% | |
| TGTTTAGATGGATCTGCTGT+TGG | - | chr3_3:50010367-50010386 | Msa0456440:CDS | 40.0% | |
| ATACACTGGCAAAATTGGAG+TGG | + | chr3_3:50010565-50010584 | None:intergenic | 40.0% | |
| !! | ACATCAGCATGCTTTGAGAA+GGG | - | chr3_3:50010736-50010755 | Msa0456440:intron | 40.0% |
| TTTCTTTGCAAATCGTCCTC+CGG | + | chr3_3:50010771-50010790 | None:intergenic | 40.0% | |
| ! | TGCAAAGAAAACTGATGGTG+AGG | - | chr3_3:50010781-50010800 | Msa0456440:intron | 40.0% |
| GCAAGAGGATCAAACGAAAA+TGG | - | chr3_3:50010926-50010945 | Msa0456440:intron | 40.0% | |
| AGAGGATCAAACGAAAATGG+TGG | - | chr3_3:50010929-50010948 | Msa0456440:intron | 40.0% | |
| GTACCTTACCTTGGTTATCT+TGG | - | chr3_3:50011168-50011187 | Msa0456440:intron | 40.0% | |
| ATATGCCGGCAAATCATTCT+TGG | - | chr3_3:50011197-50011216 | Msa0456440:intron | 40.0% | |
| GTAGTCAACTTCAGCTGATA+TGG | - | chr3_3:50011367-50011386 | Msa0456440:intron | 40.0% | |
| TCAACTTCAGCTGATATGGA+TGG | - | chr3_3:50011371-50011390 | Msa0456440:intron | 40.0% | |
| ACCCAAGAAACAAGAGAGTT+TGG | + | chr3_3:50011440-50011459 | None:intergenic | 40.0% | |
| ATGCACTTACCTGAGGAAGA+AGG | + | chr3_3:50007936-50007955 | None:intergenic | 45.0% | |
| ! | CTGCATTTTGTGGCTGTGAT+TGG | - | chr3_3:50008708-50008727 | Msa0456440:intron | 45.0% |
| TGAGGATATGCAACCCAAGT+CGG | - | chr3_3:50008798-50008817 | Msa0456440:intron | 45.0% | |
| AAGGAATGAGGATCTGACCT+CGG | + | chr3_3:50008838-50008857 | None:intergenic | 45.0% | |
| GGTTCAGAATAAACACCACC+GGG | + | chr3_3:50008865-50008884 | None:intergenic | 45.0% | |
| TCCTCTCTTGATTGTCCCAA+TGG | - | chr3_3:50008943-50008962 | Msa0456440:intron | 45.0% | |
| ACCATTGGGACAATCAAGAG+AGG | + | chr3_3:50008947-50008966 | None:intergenic | 45.0% | |
| ! | GGAAGATGATGATGCTGCTA+AGG | - | chr3_3:50009020-50009039 | Msa0456440:intron | 45.0% |
| GTAGTTGCATGCATTTGGAC+TGG | - | chr3_3:50009506-50009525 | Msa0456440:CDS | 45.0% | |
| ! | TTGCATGCATTTGGACTGGA+TGG | - | chr3_3:50009510-50009529 | Msa0456440:CDS | 45.0% |
| ! | TGCATGCATTTGGACTGGAT+GGG | - | chr3_3:50009511-50009530 | Msa0456440:CDS | 45.0% |
| ! | TCCATATTATGGGGGCATGA+TGG | - | chr3_3:50009593-50009612 | Msa0456440:intron | 45.0% |
| TAATGTCACATACCAACGGC+TGG | + | chr3_3:50009632-50009651 | None:intergenic | 45.0% | |
| ! | TGAGGCACTCCTATAAAAGG+AGG | + | chr3_3:50009769-50009788 | None:intergenic | 45.0% |
| ! | GCATGAGGCACTCCTATAAA+AGG | + | chr3_3:50009772-50009791 | None:intergenic | 45.0% |
| AGGTTCTTGAGCCATCTCAA+GGG | + | chr3_3:50009809-50009828 | None:intergenic | 45.0% | |
| GTGCTAAAGCAGAGCTTGAA+AGG | - | chr3_3:50009881-50009900 | Msa0456440:intron | 45.0% | |
| TTAGATGGATCTGCTGTTGG+AGG | - | chr3_3:50010370-50010389 | Msa0456440:CDS | 45.0% | |
| CAGCCTAATTCTTGCAGACA+AGG | + | chr3_3:50010418-50010437 | None:intergenic | 45.0% | |
| !! | GACATCAGCATGCTTTGAGA+AGG | - | chr3_3:50010735-50010754 | Msa0456440:intron | 45.0% |
| ATTGATTGCGACGACAAGAC+TGG | + | chr3_3:50010833-50010852 | None:intergenic | 45.0% | |
| ! | ACTTTTGCCTTCAGACTCTG+CGG | - | chr3_3:50010871-50010890 | Msa0456440:intron | 45.0% |
| CTTGCATCTTGTCGCATGTT+GGG | + | chr3_3:50010911-50010930 | None:intergenic | 45.0% | |
| TCTTGCATCTTGTCGCATGT+TGG | + | chr3_3:50010912-50010931 | None:intergenic | 45.0% | |
| AACATGCGACAAGATGCAAG+AGG | - | chr3_3:50010911-50010930 | Msa0456440:intron | 45.0% | |
| GGATCAAACGAAAATGGTGG+TGG | - | chr3_3:50010932-50010951 | Msa0456440:intron | 45.0% | |
| ! | AAGGTATCAGGGTGAAAGAG+TGG | - | chr3_3:50010991-50011010 | Msa0456440:intron | 45.0% |
| AGGGTGAAAGAGTGGAAGAA+GGG | - | chr3_3:50010999-50011018 | Msa0456440:intron | 45.0% | |
| GGTGAATGAGTACCTTACCT+TGG | - | chr3_3:50011159-50011178 | Msa0456440:intron | 45.0% | |
| CTGCCAAGATAACCAAGGTA+AGG | + | chr3_3:50011174-50011193 | None:intergenic | 45.0% | |
| TAATATGGGGGGGAGAAGAA+TGG | - | chr3_3:50011252-50011271 | Msa0456440:intron | 45.0% | |
| CTTCAGCTGATATGGATGGA+TGG | - | chr3_3:50011375-50011394 | Msa0456440:intron | 45.0% | |
| !! | TAATAGTAAAAAAAAAAATA+TGG | + | chr3_3:50009739-50009758 | None:intergenic | 5.0% |
| !!! | ATATTTTTTTTTTTACTATT+AGG | - | chr3_3:50009738-50009757 | Msa0456440:CDS | 5.0% |
| !!! | TATTTTTTTTTTTACTATTA+GGG | - | chr3_3:50009739-50009758 | Msa0456440:CDS | 5.0% |
| TCGAAGCATGCACTTACCTG+AGG | + | chr3_3:50007943-50007962 | None:intergenic | 50.0% | |
| TTCCTCCGGTTCTTAGGAGA+AGG | - | chr3_3:50008376-50008395 | Msa0456440:CDS | 50.0% | |
| TCCTCCGGTTCTTAGGAGAA+GGG | - | chr3_3:50008377-50008396 | Msa0456440:CDS | 50.0% | |
| TCAGCCGAACTCCAGATTGA+GGG | + | chr3_3:50008404-50008423 | None:intergenic | 50.0% | |
| ATCAGCCGAACTCCAGATTG+AGG | + | chr3_3:50008405-50008424 | None:intergenic | 50.0% | |
| ! | CAATCTGGAGTTCGGCTGAT+AGG | - | chr3_3:50008405-50008424 | Msa0456440:CDS | 50.0% |
| GCCACTTGAGTCCAATCACT+CGG | - | chr3_3:50008520-50008539 | Msa0456440:CDS | 50.0% | |
| ACCGAGTGATTGGACTCAAG+TGG | + | chr3_3:50008524-50008543 | None:intergenic | 50.0% | |
| CGGAAACTGCAAATCAACCG+AGG | - | chr3_3:50008818-50008837 | Msa0456440:intron | 50.0% | |
| GATCCTCATTCCTTTCAGCC+CGG | - | chr3_3:50008844-50008863 | Msa0456440:intron | 50.0% | |
| ATAAACACCACCGGGCTGAA+AGG | + | chr3_3:50008857-50008876 | None:intergenic | 50.0% | |
| !! | TATTCTGAACCTTGGTGGCG+TGG | - | chr3_3:50008874-50008893 | Msa0456440:intron | 50.0% |
| CCAGACATTGTTTGCGCTAC+AGG | + | chr3_3:50008913-50008932 | None:intergenic | 50.0% | |
| CCTGTAGCGCAAACAATGTC+TGG | - | chr3_3:50008910-50008929 | Msa0456440:intron | 50.0% | |
| !! | CAAAGACTGGCCTTCCTCAT+TGG | + | chr3_3:50008980-50008999 | None:intergenic | 50.0% |
| ACTCCTCAGCTGGAACTTGT+TGG | - | chr3_3:50009304-50009323 | Msa0456440:intron | 50.0% | |
| TGACCAACAAGTTCCAGCTG+AGG | + | chr3_3:50009310-50009329 | None:intergenic | 50.0% | |
| GCCATCATGCCCCCATAATA+TGG | + | chr3_3:50009597-50009616 | None:intergenic | 50.0% | |
| AATGCCTTTGCCCCTTGAGA+TGG | - | chr3_3:50009795-50009814 | Msa0456440:CDS | 50.0% | |
| GGTTCTTGAGCCATCTCAAG+GGG | + | chr3_3:50009808-50009827 | None:intergenic | 50.0% | |
| CAGGTTCTTGAGCCATCTCA+AGG | + | chr3_3:50009810-50009829 | None:intergenic | 50.0% | |
| GTCTTCGCCTCAGAATTCCT+TGG | + | chr3_3:50009855-50009874 | None:intergenic | 50.0% | |
| GTTGGAGGCTCAAGGAAGTT+AGG | - | chr3_3:50010385-50010404 | Msa0456440:CDS | 50.0% | |
| AAGCTCTCAGATGCAGGTAG+TGG | - | chr3_3:50010446-50010465 | Msa0456440:CDS | 50.0% | |
| !! | CATGCTTTGAGAAGGGCAAG+AGG | - | chr3_3:50010743-50010762 | Msa0456440:intron | 50.0% |
| ! | GAAAACTGATGGTGAGGCCT+CGG | - | chr3_3:50010787-50010806 | Msa0456440:intron | 50.0% |
| ! | AAAACTGATGGTGAGGCCTC+GGG | - | chr3_3:50010788-50010807 | Msa0456440:intron | 50.0% |
| AGAGCCATTATCCTTTCCCG+AGG | + | chr3_3:50010807-50010826 | None:intergenic | 50.0% | |
| ! | TCGGGAAAGGATAATGGCTC+TGG | - | chr3_3:50010806-50010825 | Msa0456440:intron | 50.0% |
| TCGCATGTTGGGAGAATTCC+AGG | + | chr3_3:50010900-50010919 | None:intergenic | 50.0% | |
| CAGGGTGAAAGAGTGGAAGA+AGG | - | chr3_3:50010998-50011017 | Msa0456440:intron | 50.0% | |
| GGGTGAAAGAGTGGAAGAAG+GGG | - | chr3_3:50011000-50011019 | Msa0456440:intron | 50.0% | |
| TGGAAGAAGGGGACTGTTCA+GGG | - | chr3_3:50011011-50011030 | Msa0456440:intron | 50.0% | |
| TCTATCCTCCCATGCAGGAA+GGG | + | chr3_3:50011102-50011121 | None:intergenic | 50.0% | |
| ATCTATCCTCCCATGCAGGA+AGG | + | chr3_3:50011103-50011122 | None:intergenic | 50.0% | |
| GGGGGAGAAGAATGGTGATT+GGG | - | chr3_3:50011260-50011279 | Msa0456440:intron | 50.0% | |
| GGGGAGAAGAATGGTGATTG+GGG | - | chr3_3:50011261-50011280 | Msa0456440:intron | 50.0% | |
| GCTGATATGGATGGATGGTC+AGG | - | chr3_3:50011380-50011399 | Msa0456440:intron | 50.0% | |
| CCTCCGGTTCTTAGGAGAAG+GGG | - | chr3_3:50008378-50008397 | Msa0456440:CDS | 55.0% | |
| TATCCAACACCACGCCACCA+AGG | + | chr3_3:50008886-50008905 | None:intergenic | 55.0% | |
| CCTGATTGATTGGGAGCAGC+AGG | + | chr3_3:50009054-50009073 | None:intergenic | 55.0% | |
| CCTGCTGCTCCCAATCAATC+AGG | - | chr3_3:50009051-50009070 | Msa0456440:intron | 55.0% | |
| AGCTTATCCTCACCAGCCGT+TGG | - | chr3_3:50009617-50009636 | Msa0456440:intron | 55.0% | |
| TCACATACCAACGGCTGGTG+AGG | + | chr3_3:50009627-50009646 | None:intergenic | 55.0% | |
| !! | GGCAAAGGCATTCTGGCATG+AGG | + | chr3_3:50009787-50009806 | None:intergenic | 55.0% |
| !! | CTCAAGGGGCAAAGGCATTC+TGG | + | chr3_3:50009794-50009813 | None:intergenic | 55.0% |
| TGAGCCATCTCAAGGGGCAA+AGG | + | chr3_3:50009802-50009821 | None:intergenic | 55.0% | |
| GATCTGCTGTTGGAGGCTCA+AGG | - | chr3_3:50010377-50010396 | Msa0456440:CDS | 55.0% | |
| ! | TTGAGAAGGGCAAGAGGCAC+CGG | - | chr3_3:50010749-50010768 | Msa0456440:intron | 55.0% |
| GAGGCCTCGGGAAAGGATAA+TGG | - | chr3_3:50010800-50010819 | Msa0456440:intron | 55.0% | |
| CAGGTTTCCGCAGAGTCTGA+AGG | + | chr3_3:50010881-50010900 | None:intergenic | 55.0% | |
| CTTCAGACTCTGCGGAAACC+TGG | - | chr3_3:50010879-50010898 | Msa0456440:intron | 55.0% | |
| GTGGAAGAAGGGGACTGTTC+AGG | - | chr3_3:50011010-50011029 | Msa0456440:intron | 55.0% | |
| !! | TGGAAGCATCTCCTCGAACG+AGG | - | chr3_3:50011042-50011061 | Msa0456440:intron | 55.0% |
| TATCCTCCCATGCAGGAAGG+GGG | + | chr3_3:50011100-50011119 | None:intergenic | 55.0% | |
| CTATCCTCCCATGCAGGAAG+GGG | + | chr3_3:50011101-50011120 | None:intergenic | 55.0% | |
| CAGCATCTATCCTCCCATGC+AGG | + | chr3_3:50011107-50011126 | None:intergenic | 55.0% | |
| GCATGGGAGGATAGATGCTG+AGG | - | chr3_3:50011107-50011126 | Msa0456440:intron | 55.0% | |
| GGGAGGATAGATGCTGAGGT+TGG | - | chr3_3:50011111-50011130 | Msa0456440:intron | 55.0% | |
| GGGGGGAGAAGAATGGTGAT+TGG | - | chr3_3:50011259-50011278 | Msa0456440:intron | 55.0% | |
| CCCCTTCTCCTAAGAACCGG+AGG | + | chr3_3:50008381-50008400 | None:intergenic | 60.0% | |
| GGGCCCCTTCTCCTAAGAAC+CGG | + | chr3_3:50008384-50008403 | None:intergenic | 60.0% | |
| AGGAGAAGGGGCCCTCAATC+TGG | - | chr3_3:50008390-50008409 | Msa0456440:CDS | 60.0% | |
| ! | GGGGCCCTCAATCTGGAGTT+CGG | - | chr3_3:50008397-50008416 | Msa0456440:CDS | 60.0% |
| CCACCGGGCTGAAAGGAATG+AGG | + | chr3_3:50008850-50008869 | None:intergenic | 60.0% | |
| CCTCATTCCTTTCAGCCCGG+TGG | - | chr3_3:50008847-50008866 | Msa0456440:intron | 60.0% | |
| !! | GAACCTTGGTGGCGTGGTGT+TGG | - | chr3_3:50008880-50008899 | Msa0456440:intron | 60.0% |
| CCAGCTGAGGAGTCTGTGTG+AGG | + | chr3_3:50009297-50009316 | None:intergenic | 60.0% | |
| CCTCACACAGACTCCTCAGC+TGG | - | chr3_3:50009294-50009313 | Msa0456440:intron | 60.0% | |
| ! | TGATGGTGAGGCCTCGGGAA+AGG | - | chr3_3:50010793-50010812 | Msa0456440:intron | 60.0% |
| GACTGTTCAGGGCAGCTACG+TGG | - | chr3_3:50011022-50011041 | Msa0456440:intron | 60.0% | |
| TAGACCCCCCCTTCCTGCAT+GGG | - | chr3_3:50011091-50011110 | Msa0456440:intron | 60.0% | |
| ATCCTCCCATGCAGGAAGGG+GGG | + | chr3_3:50011099-50011118 | None:intergenic | 60.0% | |
| !! | AGAAGGGCAAGAGGCACCGG+AGG | - | chr3_3:50010752-50010771 | Msa0456440:intron | 65.0% |
| CCTCTGCGATGCCTCGTTCG+AGG | + | chr3_3:50011056-50011075 | None:intergenic | 65.0% | |
| !! | CCTCGAACGAGGCATCGCAG+AGG | - | chr3_3:50011053-50011072 | Msa0456440:intron | 65.0% |
| GTAGACCCCCCCTTCCTGCA+TGG | - | chr3_3:50011090-50011109 | Msa0456440:intron | 65.0% | |
| TCCTCCCATGCAGGAAGGGG+GGG | + | chr3_3:50011098-50011117 | None:intergenic | 65.0% | |
| ACCCCCCCTTCCTGCATGGG+AGG | - | chr3_3:50011094-50011113 | Msa0456440:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 50007760 | 50011566 | 50007760 | ID=Msa0456440;Name=Msa0456440 |
| chr3_3 | mRNA | 50007760 | 50011566 | 50007760 | ID=Msa0456440-mRNA-1;Parent=Msa0456440;Name=Msa0456440-mRNA-1;_AED=0.08;_eAED=0.08;_QI=198|0.5|0.71|0.85|0.83|0.71|7|473|350 |
| chr3_3 | exon | 50007760 | 50008610 | 50007760 | ID=Msa0456440-mRNA-1:exon:9588;Parent=Msa0456440-mRNA-1 |
| chr3_3 | exon | 50008859 | 50008864 | 50008859 | ID=Msa0456440-mRNA-1:exon:9587;Parent=Msa0456440-mRNA-1 |
| chr3_3 | exon | 50009402 | 50009566 | 50009402 | ID=Msa0456440-mRNA-1:exon:9586;Parent=Msa0456440-mRNA-1 |
| chr3_3 | exon | 50009688 | 50009816 | 50009688 | ID=Msa0456440-mRNA-1:exon:9585;Parent=Msa0456440-mRNA-1 |
| chr3_3 | exon | 50009990 | 50010096 | 50009990 | ID=Msa0456440-mRNA-1:exon:9584;Parent=Msa0456440-mRNA-1 |
| chr3_3 | exon | 50010254 | 50010533 | 50010254 | ID=Msa0456440-mRNA-1:exon:9583;Parent=Msa0456440-mRNA-1 |
| chr3_3 | exon | 50011381 | 50011566 | 50011381 | ID=Msa0456440-mRNA-1:exon:9582;Parent=Msa0456440-mRNA-1 |
| chr3_3 | five_prime_UTR | 50011381 | 50011566 | 50011381 | ID=Msa0456440-mRNA-1:five_prime_utr;Parent=Msa0456440-mRNA-1 |
| chr3_3 | five_prime_UTR | 50010522 | 50010533 | 50010522 | ID=Msa0456440-mRNA-1:five_prime_utr;Parent=Msa0456440-mRNA-1 |
| chr3_3 | CDS | 50010254 | 50010521 | 50010254 | ID=Msa0456440-mRNA-1:cds;Parent=Msa0456440-mRNA-1 |
| chr3_3 | CDS | 50009990 | 50010096 | 50009990 | ID=Msa0456440-mRNA-1:cds;Parent=Msa0456440-mRNA-1 |
| chr3_3 | CDS | 50009688 | 50009816 | 50009688 | ID=Msa0456440-mRNA-1:cds;Parent=Msa0456440-mRNA-1 |
| chr3_3 | CDS | 50009402 | 50009566 | 50009402 | ID=Msa0456440-mRNA-1:cds;Parent=Msa0456440-mRNA-1 |
| chr3_3 | CDS | 50008859 | 50008864 | 50008859 | ID=Msa0456440-mRNA-1:cds;Parent=Msa0456440-mRNA-1 |
| chr3_3 | CDS | 50008233 | 50008610 | 50008233 | ID=Msa0456440-mRNA-1:cds;Parent=Msa0456440-mRNA-1 |
| chr3_3 | three_prime_UTR | 50007760 | 50008232 | 50007760 | ID=Msa0456440-mRNA-1:three_prime_utr;Parent=Msa0456440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
