Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456800 | KEH15586.1 | 84.615 | 78 | 12 | 0 | 74 | 151 | 50 | 127 | 7.33e-31 | 118 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456800 | sp|Q6X7J4|WOX9_ARATH | 64.583 | 48 | 17 | 0 | 60 | 107 | 74 | 121 | 1.92e-14 | 72.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456800 | A0A072TEA9 | 84.615 | 78 | 12 | 0 | 74 | 151 | 50 | 127 | 3.50e-31 | 118 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0456800 | TF | HB-WOX |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456800 | MtrunA17_Chr7g0223471 | 63.043 | 92 | 29 | 1 | 60 | 151 | 66 | 152 | 4.33e-25 | 99.0 |
| Msa0456800 | MtrunA17_Chr4g0046231 | 66.197 | 71 | 21 | 2 | 60 | 128 | 1 | 70 | 4.25e-21 | 87.4 |
| Msa0456800 | MtrunA17_Chr2g0283141 | 72.093 | 43 | 12 | 0 | 60 | 102 | 74 | 116 | 3.31e-15 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456800 | AT2G33880.1 | 64.583 | 48 | 17 | 0 | 60 | 107 | 74 | 121 | 1.96e-15 | 72.4 |
| Msa0456800 | AT2G33880.2 | 64.583 | 48 | 17 | 0 | 60 | 107 | 74 | 121 | 2.29e-15 | 72.4 |
| Msa0456800 | AT5G45980.1 | 58.000 | 50 | 20 | 1 | 61 | 110 | 75 | 123 | 5.01e-13 | 65.5 |
Find 33 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCCGTTTGGTTGTGTTTC+TGG | 0.082230 | 3_3:-50985681 | None:intergenic |
| TTCTTAATTTCTTCTCTTCT+TGG | 0.086625 | 3_3:-50985543 | None:intergenic |
| CGTGAACAATTACAAGAATT+TGG | 0.113481 | 3_3:+50985570 | Msa0456800:CDS |
| CCAATATTAATGACATATTA+TGG | 0.231660 | 3_3:-50985796 | None:intergenic |
| TGTTTCTGGTCTCTTGTTGT+AGG | 0.261301 | 3_3:-50985667 | None:intergenic |
| ATTTGTGTGAGAGAATTATT+AGG | 0.352206 | 3_3:-50985705 | None:intergenic |
| GATGATGAAGATGATTTAGA+AGG | 0.363428 | 3_3:-50985738 | None:intergenic |
| GTGAACAATTACAAGAATTT+GGG | 0.368349 | 3_3:+50985571 | Msa0456800:CDS |
| TGTTGATATGCTGGGATAGA+TGG | 0.388681 | 3_3:-50984721 | None:intergenic |
| CCGATCAATTGTTGATATGC+TGG | 0.403979 | 3_3:-50984730 | None:intergenic |
| ATGACATATTATGGTTTCAC+TGG | 0.411622 | 3_3:-50985787 | None:intergenic |
| GTTTCTGGTCTCTTGTTGTA+GGG | 0.424258 | 3_3:-50985666 | None:intergenic |
| ACGTTACAGTTCGTTTAAAC+CGG | 0.450590 | 3_3:+50983470 | Msa0456800:CDS |
| TATTATGGTTTCACTGGGAG+AGG | 0.492399 | 3_3:-50985781 | None:intergenic |
| GTGAGAGATTCGCAGGAACA+TGG | 0.503831 | 3_3:+50983440 | Msa0456800:CDS |
| CGATCAATTGTTGATATGCT+GGG | 0.520274 | 3_3:-50984729 | None:intergenic |
| GAATTATTAGGAGTTCCGTT+TGG | 0.522863 | 3_3:-50985693 | None:intergenic |
| GATGAAGATGATTTAGAAGG+AGG | 0.525086 | 3_3:-50985735 | None:intergenic |
| AGACCAGAAACACAACCAAA+CGG | 0.543112 | 3_3:+50985678 | Msa0456800:CDS |
| ACCGCCGGTGAGAGATTCGC+AGG | 0.557985 | 3_3:+50983433 | Msa0456800:CDS |
| TTTCTGGTCTCTTGTTGTAG+GGG | 0.566911 | 3_3:-50985665 | None:intergenic |
| TGACATATTATGGTTTCACT+GGG | 0.569315 | 3_3:-50985786 | None:intergenic |
| AACACACCCCTTCCCCACGA+GGG | 0.577900 | 3_3:-50983513 | None:intergenic |
| ACACACCCCTTCCCCACGAG+GGG | 0.592615 | 3_3:-50983512 | None:intergenic |
| TGAGAGATTCGCAGGAACAT+GGG | 0.597631 | 3_3:+50983441 | Msa0456800:CDS |
| GTGCACGGAGCAACAGAGAC+CGG | 0.599922 | 3_3:-50983489 | None:intergenic |
| TTTGTCTGCTTATGGACTTG+CGG | 0.603126 | 3_3:-50985632 | None:intergenic |
| CCAGCATATCAACAATTGAT+CGG | 0.605593 | 3_3:+50984730 | Msa0456800:CDS |
| CAACACACCCCTTCCCCACG+AGG | 0.634809 | 3_3:-50983514 | None:intergenic |
| ATCATGGGAAGTGTAACCGC+CGG | 0.668265 | 3_3:+50983418 | None:intergenic |
| TGTTCCTGCGAATCTCTCAC+CGG | 0.668924 | 3_3:-50983437 | None:intergenic |
| CACACCCCTTCCCCACGAGG+GGG | 0.669425 | 3_3:-50983511 | None:intergenic |
| TCCTGCGAATCTCTCACCGG+CGG | 0.681626 | 3_3:-50983434 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAACAAATATTATTTAGA+TGG | + | chr3_3:50985358-50985377 | Msa0456800:intron | 10.0% |
| !! | TATAATAAATATTGTTGAAT+TGG | + | chr3_3:50985443-50985462 | Msa0456800:intron | 10.0% |
| !! | TATAACAAATATTATTTAGA+TGG | + | chr3_3:50985358-50985377 | Msa0456800:intron | 10.0% |
| !! | TATAATAAATATTGTTGAAT+TGG | + | chr3_3:50985443-50985462 | Msa0456800:intron | 10.0% |
| !! | TAATTATTCATGAATTAGAA+TGG | - | chr3_3:50983836-50983855 | None:intergenic | 15.0% |
| !! | TTAATAAAACAAACATAGAA+GGG | - | chr3_3:50983873-50983892 | None:intergenic | 15.0% |
| !! | ACAGACAATATTTATAAAAT+TGG | - | chr3_3:50984435-50984454 | None:intergenic | 15.0% |
| !!! | TTTATTTTATACTATATCTG+TGG | + | chr3_3:50985145-50985164 | Msa0456800:intron | 15.0% |
| !! | TAATTATTCATGAATTAGAA+TGG | - | chr3_3:50983836-50983855 | None:intergenic | 15.0% |
| !! | TTAATAAAACAAACATAGAA+GGG | - | chr3_3:50983873-50983892 | None:intergenic | 15.0% |
| !! | ACAGACAATATTTATAAAAT+TGG | - | chr3_3:50984435-50984454 | None:intergenic | 15.0% |
| !!! | TTTATTTTATACTATATCTG+TGG | + | chr3_3:50985145-50985164 | Msa0456800:intron | 15.0% |
| !! | CTTAATAAAACAAACATAGA+AGG | - | chr3_3:50983874-50983893 | None:intergenic | 20.0% |
| !! | TATAAGTATATGAGAAAGTT+TGG | - | chr3_3:50983996-50984015 | None:intergenic | 20.0% |
| !! | GAAAATGTAGTAATAAATAG+TGG | - | chr3_3:50984089-50984108 | None:intergenic | 20.0% |
| !! | AAAAATGCATAAAATATGCA+AGG | - | chr3_3:50984514-50984533 | None:intergenic | 20.0% |
| !!! | TTCTCTATCTTTTGATATTT+AGG | + | chr3_3:50984678-50984697 | Msa0456800:intron | 20.0% |
| !!! | AATCATCATAATGATAATGA+GGG | - | chr3_3:50984888-50984907 | None:intergenic | 20.0% |
| !!! | TAATCATCATAATGATAATG+AGG | - | chr3_3:50984889-50984908 | None:intergenic | 20.0% |
| !!! | ATCGATATAATTGTTTTGAT+TGG | - | chr3_3:50984987-50985006 | None:intergenic | 20.0% |
| !!! | TCAAAACAATTATATCGATT+TGG | + | chr3_3:50984988-50985007 | Msa0456800:intron | 20.0% |
| !!! | TTTCTTTATTCTAGTTTGAT+TGG | + | chr3_3:50985418-50985437 | Msa0456800:intron | 20.0% |
| !! | GCTTATAACAAATATTGTTT+AGG | + | chr3_3:50985495-50985514 | Msa0456800:intron | 20.0% |
| !! | CTTAATAAAACAAACATAGA+AGG | - | chr3_3:50983874-50983893 | None:intergenic | 20.0% |
| !! | TATAAGTATATGAGAAAGTT+TGG | - | chr3_3:50983996-50984015 | None:intergenic | 20.0% |
| !! | GAAAATGTAGTAATAAATAG+TGG | - | chr3_3:50984089-50984108 | None:intergenic | 20.0% |
| !! | AAAAATGCATAAAATATGCA+AGG | - | chr3_3:50984514-50984533 | None:intergenic | 20.0% |
| !!! | TTCTCTATCTTTTGATATTT+AGG | + | chr3_3:50984678-50984697 | Msa0456800:intron | 20.0% |
| !!! | AATCATCATAATGATAATGA+GGG | - | chr3_3:50984888-50984907 | None:intergenic | 20.0% |
| !!! | TAATCATCATAATGATAATG+AGG | - | chr3_3:50984889-50984908 | None:intergenic | 20.0% |
| !!! | ATCGATATAATTGTTTTGAT+TGG | - | chr3_3:50984987-50985006 | None:intergenic | 20.0% |
| !!! | TCAAAACAATTATATCGATT+TGG | + | chr3_3:50984988-50985007 | Msa0456800:intron | 20.0% |
| !!! | TTTCTTTATTCTAGTTTGAT+TGG | + | chr3_3:50985418-50985437 | Msa0456800:intron | 20.0% |
| !! | GCTTATAACAAATATTGTTT+AGG | + | chr3_3:50985495-50985514 | Msa0456800:intron | 20.0% |
| ! | TGTAAATGATCAATGAAAGT+GGG | - | chr3_3:50983640-50983659 | None:intergenic | 25.0% |
| ! | AGCAATGAACTAATAGAAAA+AGG | - | chr3_3:50983791-50983810 | None:intergenic | 25.0% |
| ! | CTCCTATTTAATACTCATTT+CGG | - | chr3_3:50984022-50984041 | None:intergenic | 25.0% |
| !! | CTGTAGAGATAAAATTTGTT+TGG | - | chr3_3:50985048-50985067 | None:intergenic | 25.0% |
| !! | CAAACAAATTTTATCTCTAC+AGG | + | chr3_3:50985046-50985065 | Msa0456800:intron | 25.0% |
| ! | TAGATGGAGAATTATTTAGA+TGG | + | chr3_3:50985374-50985393 | Msa0456800:intron | 25.0% |
| ! | TTCTTAATTTCTTCTCTTCT+TGG | - | chr3_3:50985546-50985565 | None:intergenic | 25.0% |
| ! | GTGAACAATTACAAGAATTT+GGG | + | chr3_3:50985571-50985590 | Msa0456800:CDS | 25.0% |
| ! | ATTTGTGTGAGAGAATTATT+AGG | - | chr3_3:50985708-50985727 | None:intergenic | 25.0% |
| ! | TGTAAATGATCAATGAAAGT+GGG | - | chr3_3:50983640-50983659 | None:intergenic | 25.0% |
| ! | AGCAATGAACTAATAGAAAA+AGG | - | chr3_3:50983791-50983810 | None:intergenic | 25.0% |
| ! | CTCCTATTTAATACTCATTT+CGG | - | chr3_3:50984022-50984041 | None:intergenic | 25.0% |
| !! | CTGTAGAGATAAAATTTGTT+TGG | - | chr3_3:50985048-50985067 | None:intergenic | 25.0% |
| !! | CAAACAAATTTTATCTCTAC+AGG | + | chr3_3:50985046-50985065 | Msa0456800:intron | 25.0% |
| ! | TAGATGGAGAATTATTTAGA+TGG | + | chr3_3:50985374-50985393 | Msa0456800:intron | 25.0% |
| ! | TTCTTAATTTCTTCTCTTCT+TGG | - | chr3_3:50985546-50985565 | None:intergenic | 25.0% |
| ! | GTGAACAATTACAAGAATTT+GGG | + | chr3_3:50985571-50985590 | Msa0456800:CDS | 25.0% |
| ! | ATTTGTGTGAGAGAATTATT+AGG | - | chr3_3:50985708-50985727 | None:intergenic | 25.0% |
| !! | TAGTTTTTCATCTGGAATAG+AGG | - | chr3_3:50983560-50983579 | None:intergenic | 30.0% |
| GTGTAAATGATCAATGAAAG+TGG | - | chr3_3:50983641-50983660 | None:intergenic | 30.0% | |
| TAAGTAAAGCTAGCAAACAT+TGG | + | chr3_3:50983705-50983724 | Msa0456800:intron | 30.0% | |
| TATATGAGAAAGTTTGGTCA+AGG | - | chr3_3:50983990-50984009 | None:intergenic | 30.0% | |
| GACCGAAATGAGTATTAAAT+AGG | + | chr3_3:50984017-50984036 | Msa0456800:intron | 30.0% | |
| CGAAATGAGTATTAAATAGG+AGG | + | chr3_3:50984020-50984039 | Msa0456800:intron | 30.0% | |
| TCAGAAGAAAAAAAACACAC+AGG | + | chr3_3:50984149-50984168 | Msa0456800:intron | 30.0% | |
| AGAAAAAAAACACACAGGAA+AGG | + | chr3_3:50984154-50984173 | Msa0456800:intron | 30.0% | |
| ! | AGCAGTTTTCTTCAAAGAAA+CGG | - | chr3_3:50984318-50984337 | None:intergenic | 30.0% |
| !! | AGAAAACTGCTTGTTTTTCA+CGG | - | chr3_3:50984251-50984270 | None:intergenic | 30.0% |
| TACAAACAAACAAGAAGGAA+AGG | - | chr3_3:50984406-50984425 | None:intergenic | 30.0% | |
| CACATTACAAACAAACAAGA+AGG | - | chr3_3:50984411-50984430 | None:intergenic | 30.0% | |
| CAACAAAAAAAAAGGCAGAT+AGG | - | chr3_3:50984465-50984484 | None:intergenic | 30.0% | |
| !!! | CTATCTGCCTTTTTTTTTGT+TGG | + | chr3_3:50984463-50984482 | Msa0456800:intron | 30.0% |
| AACACCACCAACAAAAAAAA+AGG | - | chr3_3:50984473-50984492 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTGTTGGTGGTGTT+CGG | + | chr3_3:50984473-50984492 | Msa0456800:intron | 30.0% |
| CATAAAATATGCAAGGTTCA+GGG | - | chr3_3:50984507-50984526 | None:intergenic | 30.0% | |
| TTAGGACAATGTTTGTTTGA+GGG | - | chr3_3:50984764-50984783 | None:intergenic | 30.0% | |
| ! | ATCATAATGATAATGAGGGA+AGG | - | chr3_3:50984884-50984903 | None:intergenic | 30.0% |
| ! | AGTTTGTAGAGTCATTGATT+TGG | - | chr3_3:50984957-50984976 | None:intergenic | 30.0% |
| !!! | GATTTGGTTTTTTCCATGTT+GGG | + | chr3_3:50985004-50985023 | Msa0456800:intron | 30.0% |
| !!! | ATTTGGTTTTTTCCATGTTG+GGG | + | chr3_3:50985005-50985024 | Msa0456800:intron | 30.0% |
| CGTGAACAATTACAAGAATT+TGG | + | chr3_3:50985570-50985589 | Msa0456800:CDS | 30.0% | |
| ! | TCTTTTCTTTTGTCTGCTTA+TGG | - | chr3_3:50985643-50985662 | None:intergenic | 30.0% |
| GATGATGAAGATGATTTAGA+AGG | - | chr3_3:50985741-50985760 | None:intergenic | 30.0% | |
| TGACATATTATGGTTTCACT+GGG | - | chr3_3:50985789-50985808 | None:intergenic | 30.0% | |
| ATGACATATTATGGTTTCAC+TGG | - | chr3_3:50985790-50985809 | None:intergenic | 30.0% | |
| !! | TAGTTTTTCATCTGGAATAG+AGG | - | chr3_3:50983560-50983579 | None:intergenic | 30.0% |
| GTGTAAATGATCAATGAAAG+TGG | - | chr3_3:50983641-50983660 | None:intergenic | 30.0% | |
| TAAGTAAAGCTAGCAAACAT+TGG | + | chr3_3:50983705-50983724 | Msa0456800:intron | 30.0% | |
| TATATGAGAAAGTTTGGTCA+AGG | - | chr3_3:50983990-50984009 | None:intergenic | 30.0% | |
| GACCGAAATGAGTATTAAAT+AGG | + | chr3_3:50984017-50984036 | Msa0456800:intron | 30.0% | |
| CGAAATGAGTATTAAATAGG+AGG | + | chr3_3:50984020-50984039 | Msa0456800:intron | 30.0% | |
| TCAGAAGAAAAAAAACACAC+AGG | + | chr3_3:50984149-50984168 | Msa0456800:intron | 30.0% | |
| AGAAAAAAAACACACAGGAA+AGG | + | chr3_3:50984154-50984173 | Msa0456800:intron | 30.0% | |
| ! | AGCAGTTTTCTTCAAAGAAA+CGG | - | chr3_3:50984318-50984337 | None:intergenic | 30.0% |
| !! | AGAAAACTGCTTGTTTTTCA+CGG | - | chr3_3:50984251-50984270 | None:intergenic | 30.0% |
| TACAAACAAACAAGAAGGAA+AGG | - | chr3_3:50984406-50984425 | None:intergenic | 30.0% | |
| CACATTACAAACAAACAAGA+AGG | - | chr3_3:50984411-50984430 | None:intergenic | 30.0% | |
| CAACAAAAAAAAAGGCAGAT+AGG | - | chr3_3:50984465-50984484 | None:intergenic | 30.0% | |
| !!! | CTATCTGCCTTTTTTTTTGT+TGG | + | chr3_3:50984463-50984482 | Msa0456800:intron | 30.0% |
| AACACCACCAACAAAAAAAA+AGG | - | chr3_3:50984473-50984492 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTGTTGGTGGTGTT+CGG | + | chr3_3:50984473-50984492 | Msa0456800:intron | 30.0% |
| CATAAAATATGCAAGGTTCA+GGG | - | chr3_3:50984507-50984526 | None:intergenic | 30.0% | |
| TTAGGACAATGTTTGTTTGA+GGG | - | chr3_3:50984764-50984783 | None:intergenic | 30.0% | |
| ! | ATCATAATGATAATGAGGGA+AGG | - | chr3_3:50984884-50984903 | None:intergenic | 30.0% |
| ! | AGTTTGTAGAGTCATTGATT+TGG | - | chr3_3:50984957-50984976 | None:intergenic | 30.0% |
| !!! | GATTTGGTTTTTTCCATGTT+GGG | + | chr3_3:50985004-50985023 | Msa0456800:intron | 30.0% |
| !!! | ATTTGGTTTTTTCCATGTTG+GGG | + | chr3_3:50985005-50985024 | Msa0456800:intron | 30.0% |
| CGTGAACAATTACAAGAATT+TGG | + | chr3_3:50985570-50985589 | Msa0456800:CDS | 30.0% | |
| ! | TCTTTTCTTTTGTCTGCTTA+TGG | - | chr3_3:50985643-50985662 | None:intergenic | 30.0% |
| GATGATGAAGATGATTTAGA+AGG | - | chr3_3:50985741-50985760 | None:intergenic | 30.0% | |
| TGACATATTATGGTTTCACT+GGG | - | chr3_3:50985789-50985808 | None:intergenic | 30.0% | |
| ATGACATATTATGGTTTCAC+TGG | - | chr3_3:50985790-50985809 | None:intergenic | 30.0% | |
| ACGTTACAGTTCGTTTAAAC+CGG | + | chr3_3:50983470-50983489 | Msa0456800:CDS | 35.0% | |
| !!! | TTTGCAGCTAGTTTTTCATC+TGG | - | chr3_3:50983568-50983587 | None:intergenic | 35.0% |
| ! | TTGGTTCTTGTAGCAAACAT+TGG | + | chr3_3:50983724-50983743 | Msa0456800:intron | 35.0% |
| TCAAGGAAGGTTAATGTATC+TGG | - | chr3_3:50983973-50983992 | None:intergenic | 35.0% | |
| GGAGGAAATGAGCATTTAAT+AGG | + | chr3_3:50984038-50984057 | Msa0456800:intron | 35.0% | |
| TAGCAGTGATGTATGATCAA+GGG | - | chr3_3:50984125-50984144 | None:intergenic | 35.0% | |
| AAAGCTACAGTTATACACAG+CGG | - | chr3_3:50984201-50984220 | None:intergenic | 35.0% | |
| !!! | TCTGCCTTTTTTTTTGTTGG+TGG | + | chr3_3:50984466-50984485 | Msa0456800:intron | 35.0% |
| !!! | TTTTTTTGTTGGTGGTGTTC+GGG | + | chr3_3:50984474-50984493 | Msa0456800:intron | 35.0% |
| GCATAAAATATGCAAGGTTC+AGG | - | chr3_3:50984508-50984527 | None:intergenic | 35.0% | |
| CGATCAATTGTTGATATGCT+GGG | - | chr3_3:50984732-50984751 | None:intergenic | 35.0% | |
| CCAGCATATCAACAATTGAT+CGG | + | chr3_3:50984730-50984749 | Msa0456800:CDS | 35.0% | |
| TATCAACAATTGATCGGTGA+TGG | + | chr3_3:50984736-50984755 | Msa0456800:intron | 35.0% | |
| GTTAGGACAATGTTTGTTTG+AGG | - | chr3_3:50984765-50984784 | None:intergenic | 35.0% | |
| ! | GTCGACTTCTTAAACATGTT+AGG | - | chr3_3:50984782-50984801 | None:intergenic | 35.0% |
| !!! | CGATTTGGTTTTTTCCATGT+TGG | + | chr3_3:50985003-50985022 | Msa0456800:intron | 35.0% |
| ! | TTTCGTTACTCTTGTTTGAC+TGG | + | chr3_3:50985333-50985352 | Msa0456800:intron | 35.0% |
| GAATTATTAGGAGTTCCGTT+TGG | - | chr3_3:50985696-50985715 | None:intergenic | 35.0% | |
| GATGAAGATGATTTAGAAGG+AGG | - | chr3_3:50985738-50985757 | None:intergenic | 35.0% | |
| ACGTTACAGTTCGTTTAAAC+CGG | + | chr3_3:50983470-50983489 | Msa0456800:CDS | 35.0% | |
| !!! | TTTGCAGCTAGTTTTTCATC+TGG | - | chr3_3:50983568-50983587 | None:intergenic | 35.0% |
| ! | TTGGTTCTTGTAGCAAACAT+TGG | + | chr3_3:50983724-50983743 | Msa0456800:intron | 35.0% |
| TCAAGGAAGGTTAATGTATC+TGG | - | chr3_3:50983973-50983992 | None:intergenic | 35.0% | |
| GGAGGAAATGAGCATTTAAT+AGG | + | chr3_3:50984038-50984057 | Msa0456800:intron | 35.0% | |
| TAGCAGTGATGTATGATCAA+GGG | - | chr3_3:50984125-50984144 | None:intergenic | 35.0% | |
| AAAGCTACAGTTATACACAG+CGG | - | chr3_3:50984201-50984220 | None:intergenic | 35.0% | |
| !!! | TCTGCCTTTTTTTTTGTTGG+TGG | + | chr3_3:50984466-50984485 | Msa0456800:intron | 35.0% |
| !!! | TTTTTTTGTTGGTGGTGTTC+GGG | + | chr3_3:50984474-50984493 | Msa0456800:intron | 35.0% |
| GCATAAAATATGCAAGGTTC+AGG | - | chr3_3:50984508-50984527 | None:intergenic | 35.0% | |
| CGATCAATTGTTGATATGCT+GGG | - | chr3_3:50984732-50984751 | None:intergenic | 35.0% | |
| CCAGCATATCAACAATTGAT+CGG | + | chr3_3:50984730-50984749 | Msa0456800:CDS | 35.0% | |
| TATCAACAATTGATCGGTGA+TGG | + | chr3_3:50984736-50984755 | Msa0456800:intron | 35.0% | |
| GTTAGGACAATGTTTGTTTG+AGG | - | chr3_3:50984765-50984784 | None:intergenic | 35.0% | |
| ! | GTCGACTTCTTAAACATGTT+AGG | - | chr3_3:50984782-50984801 | None:intergenic | 35.0% |
| !!! | CGATTTGGTTTTTTCCATGT+TGG | + | chr3_3:50985003-50985022 | Msa0456800:intron | 35.0% |
| ! | TTTCGTTACTCTTGTTTGAC+TGG | + | chr3_3:50985333-50985352 | Msa0456800:intron | 35.0% |
| GAATTATTAGGAGTTCCGTT+TGG | - | chr3_3:50985696-50985715 | None:intergenic | 35.0% | |
| GATGAAGATGATTTAGAAGG+AGG | - | chr3_3:50985738-50985757 | None:intergenic | 35.0% | |
| GGATGCATGCATGAATTACA+CGG | - | chr3_3:50983815-50983834 | None:intergenic | 40.0% | |
| TGAGAAAGTTTGGTCAAGGA+AGG | - | chr3_3:50983986-50984005 | None:intergenic | 40.0% | |
| TGTATGATCAAGGGAAGAGA+TGG | - | chr3_3:50984116-50984135 | None:intergenic | 40.0% | |
| CTAGCAGTGATGTATGATCA+AGG | - | chr3_3:50984126-50984145 | None:intergenic | 40.0% | |
| !!! | TTTTTTGTTGGTGGTGTTCG+GGG | + | chr3_3:50984475-50984494 | Msa0456800:intron | 40.0% |
| TGTTGATATGCTGGGATAGA+TGG | - | chr3_3:50984724-50984743 | None:intergenic | 40.0% | |
| CCGATCAATTGTTGATATGC+TGG | - | chr3_3:50984733-50984752 | None:intergenic | 40.0% | |
| !! | GCTATGTTGCTGATTCTGAT+GGG | - | chr3_3:50984825-50984844 | None:intergenic | 40.0% |
| TTGAAAACCAGTTACGAGAC+AGG | - | chr3_3:50984855-50984874 | None:intergenic | 40.0% | |
| TTCGTTATATGACCCCAACA+TGG | - | chr3_3:50985020-50985039 | None:intergenic | 40.0% | |
| TTTAGATGGAGATGCTGAAC+TGG | + | chr3_3:50985388-50985407 | Msa0456800:intron | 40.0% | |
| ! | GTGATGCTAGTGTCTTTTAC+TGG | + | chr3_3:50985601-50985620 | Msa0456800:CDS | 40.0% |
| TTTGTCTGCTTATGGACTTG+CGG | - | chr3_3:50985635-50985654 | None:intergenic | 40.0% | |
| ! | TTTCTGGTCTCTTGTTGTAG+GGG | - | chr3_3:50985668-50985687 | None:intergenic | 40.0% |
| !! | GTTTCTGGTCTCTTGTTGTA+GGG | - | chr3_3:50985669-50985688 | None:intergenic | 40.0% |
| !! | TGTTTCTGGTCTCTTGTTGT+AGG | - | chr3_3:50985670-50985689 | None:intergenic | 40.0% |
| AGACCAGAAACACAACCAAA+CGG | + | chr3_3:50985678-50985697 | Msa0456800:CDS | 40.0% | |
| TATTATGGTTTCACTGGGAG+AGG | - | chr3_3:50985784-50985803 | None:intergenic | 40.0% | |
| GGATGCATGCATGAATTACA+CGG | - | chr3_3:50983815-50983834 | None:intergenic | 40.0% | |
| TGAGAAAGTTTGGTCAAGGA+AGG | - | chr3_3:50983986-50984005 | None:intergenic | 40.0% | |
| TGTATGATCAAGGGAAGAGA+TGG | - | chr3_3:50984116-50984135 | None:intergenic | 40.0% | |
| CTAGCAGTGATGTATGATCA+AGG | - | chr3_3:50984126-50984145 | None:intergenic | 40.0% | |
| !!! | TTTTTTGTTGGTGGTGTTCG+GGG | + | chr3_3:50984475-50984494 | Msa0456800:intron | 40.0% |
| TGTTGATATGCTGGGATAGA+TGG | - | chr3_3:50984724-50984743 | None:intergenic | 40.0% | |
| CCGATCAATTGTTGATATGC+TGG | - | chr3_3:50984733-50984752 | None:intergenic | 40.0% | |
| !! | GCTATGTTGCTGATTCTGAT+GGG | - | chr3_3:50984825-50984844 | None:intergenic | 40.0% |
| TTGAAAACCAGTTACGAGAC+AGG | - | chr3_3:50984855-50984874 | None:intergenic | 40.0% | |
| TTCGTTATATGACCCCAACA+TGG | - | chr3_3:50985020-50985039 | None:intergenic | 40.0% | |
| TTTAGATGGAGATGCTGAAC+TGG | + | chr3_3:50985388-50985407 | Msa0456800:intron | 40.0% | |
| ! | GTGATGCTAGTGTCTTTTAC+TGG | + | chr3_3:50985601-50985620 | Msa0456800:CDS | 40.0% |
| TTTGTCTGCTTATGGACTTG+CGG | - | chr3_3:50985635-50985654 | None:intergenic | 40.0% | |
| ! | TTTCTGGTCTCTTGTTGTAG+GGG | - | chr3_3:50985668-50985687 | None:intergenic | 40.0% |
| !! | GTTTCTGGTCTCTTGTTGTA+GGG | - | chr3_3:50985669-50985688 | None:intergenic | 40.0% |
| !! | TGTTTCTGGTCTCTTGTTGT+AGG | - | chr3_3:50985670-50985689 | None:intergenic | 40.0% |
| AGACCAGAAACACAACCAAA+CGG | + | chr3_3:50985678-50985697 | Msa0456800:CDS | 40.0% | |
| TATTATGGTTTCACTGGGAG+AGG | - | chr3_3:50985784-50985803 | None:intergenic | 40.0% | |
| TGAGAGATTCGCAGGAACAT+GGG | + | chr3_3:50983441-50983460 | Msa0456800:CDS | 45.0% | |
| !! | ATGTTGCTGATTCTGATGGG+TGG | - | chr3_3:50984822-50984841 | None:intergenic | 45.0% |
| !! | GGCTATGTTGCTGATTCTGA+TGG | - | chr3_3:50984826-50984845 | None:intergenic | 45.0% |
| CAGTTACGAGACAGGAGTTT+AGG | - | chr3_3:50984847-50984866 | None:intergenic | 45.0% | |
| CTAAACTCCTGTCTCGTAAC+TGG | + | chr3_3:50984845-50984864 | Msa0456800:intron | 45.0% | |
| GTTCCGTTTGGTTGTGTTTC+TGG | - | chr3_3:50985684-50985703 | None:intergenic | 45.0% | |
| TGAGAGATTCGCAGGAACAT+GGG | + | chr3_3:50983441-50983460 | Msa0456800:CDS | 45.0% | |
| !! | ATGTTGCTGATTCTGATGGG+TGG | - | chr3_3:50984822-50984841 | None:intergenic | 45.0% |
| !! | GGCTATGTTGCTGATTCTGA+TGG | - | chr3_3:50984826-50984845 | None:intergenic | 45.0% |
| CAGTTACGAGACAGGAGTTT+AGG | - | chr3_3:50984847-50984866 | None:intergenic | 45.0% | |
| CTAAACTCCTGTCTCGTAAC+TGG | + | chr3_3:50984845-50984864 | Msa0456800:intron | 45.0% | |
| GTTCCGTTTGGTTGTGTTTC+TGG | - | chr3_3:50985684-50985703 | None:intergenic | 45.0% | |
| !! | TACAAATTTATAATATAAAA+CGG | - | chr3_3:50984576-50984595 | None:intergenic | 5.0% |
| !! | TACAAATTTATAATATAAAA+CGG | - | chr3_3:50984576-50984595 | None:intergenic | 5.0% |
| TGTTCCTGCGAATCTCTCAC+CGG | - | chr3_3:50983440-50983459 | None:intergenic | 50.0% | |
| GTGAGAGATTCGCAGGAACA+TGG | + | chr3_3:50983440-50983459 | Msa0456800:CDS | 50.0% | |
| CTTCGTGAGCTTAGCTCAGT+TGG | - | chr3_3:50984541-50984560 | None:intergenic | 50.0% | |
| ! | TTCTGATGGGTGGAGTTGGA+TGG | - | chr3_3:50984812-50984831 | None:intergenic | 50.0% |
| ! | CTGATTCTGATGGGTGGAGT+TGG | - | chr3_3:50984816-50984835 | None:intergenic | 50.0% |
| TGTTCCTGCGAATCTCTCAC+CGG | - | chr3_3:50983440-50983459 | None:intergenic | 50.0% | |
| GTGAGAGATTCGCAGGAACA+TGG | + | chr3_3:50983440-50983459 | Msa0456800:CDS | 50.0% | |
| CTTCGTGAGCTTAGCTCAGT+TGG | - | chr3_3:50984541-50984560 | None:intergenic | 50.0% | |
| ! | TTCTGATGGGTGGAGTTGGA+TGG | - | chr3_3:50984812-50984831 | None:intergenic | 50.0% |
| ! | CTGATTCTGATGGGTGGAGT+TGG | - | chr3_3:50984816-50984835 | None:intergenic | 50.0% |
| TCCTGCGAATCTCTCACCGG+CGG | - | chr3_3:50983437-50983456 | None:intergenic | 60.0% | |
| GTGCACGGAGCAACAGAGAC+CGG | - | chr3_3:50983492-50983511 | None:intergenic | 60.0% | |
| AACACACCCCTTCCCCACGA+GGG | - | chr3_3:50983516-50983535 | None:intergenic | 60.0% | |
| TCCTGCGAATCTCTCACCGG+CGG | - | chr3_3:50983437-50983456 | None:intergenic | 60.0% | |
| GTGCACGGAGCAACAGAGAC+CGG | - | chr3_3:50983492-50983511 | None:intergenic | 60.0% | |
| AACACACCCCTTCCCCACGA+GGG | - | chr3_3:50983516-50983535 | None:intergenic | 60.0% | |
| ACCGCCGGTGAGAGATTCGC+AGG | + | chr3_3:50983433-50983452 | Msa0456800:CDS | 65.0% | |
| ACACACCCCTTCCCCACGAG+GGG | - | chr3_3:50983515-50983534 | None:intergenic | 65.0% | |
| CAACACACCCCTTCCCCACG+AGG | - | chr3_3:50983517-50983536 | None:intergenic | 65.0% | |
| ACCGCCGGTGAGAGATTCGC+AGG | + | chr3_3:50983433-50983452 | Msa0456800:CDS | 65.0% | |
| ACACACCCCTTCCCCACGAG+GGG | - | chr3_3:50983515-50983534 | None:intergenic | 65.0% | |
| CAACACACCCCTTCCCCACG+AGG | - | chr3_3:50983517-50983536 | None:intergenic | 65.0% | |
| TTGCTCCGTGCACCCCCTCG+TGG | + | chr3_3:50983499-50983518 | Msa0456800:CDS | 70.0% | |
| TGCTCCGTGCACCCCCTCGT+GGG | + | chr3_3:50983500-50983519 | Msa0456800:CDS | 70.0% | |
| ! | CTTCCCCACGAGGGGGTGCA+CGG | - | chr3_3:50983507-50983526 | None:intergenic | 70.0% |
| GTGCACCCCCTCGTGGGGAA+GGG | + | chr3_3:50983506-50983525 | Msa0456800:CDS | 70.0% | |
| TGCACCCCCTCGTGGGGAAG+GGG | + | chr3_3:50983507-50983526 | Msa0456800:CDS | 70.0% | |
| CACACCCCTTCCCCACGAGG+GGG | - | chr3_3:50983514-50983533 | None:intergenic | 70.0% | |
| TTGCTCCGTGCACCCCCTCG+TGG | + | chr3_3:50983499-50983518 | Msa0456800:CDS | 70.0% | |
| TGCTCCGTGCACCCCCTCGT+GGG | + | chr3_3:50983500-50983519 | Msa0456800:CDS | 70.0% | |
| ! | CTTCCCCACGAGGGGGTGCA+CGG | - | chr3_3:50983507-50983526 | None:intergenic | 70.0% |
| GTGCACCCCCTCGTGGGGAA+GGG | + | chr3_3:50983506-50983525 | Msa0456800:CDS | 70.0% | |
| TGCACCCCCTCGTGGGGAAG+GGG | + | chr3_3:50983507-50983526 | Msa0456800:CDS | 70.0% | |
| CACACCCCTTCCCCACGAGG+GGG | - | chr3_3:50983514-50983533 | None:intergenic | 70.0% | |
| GCTCCGTGCACCCCCTCGTG+GGG | + | chr3_3:50983501-50983520 | Msa0456800:CDS | 75.0% | |
| CGTGCACCCCCTCGTGGGGA+AGG | + | chr3_3:50983505-50983524 | Msa0456800:CDS | 75.0% | |
| GCTCCGTGCACCCCCTCGTG+GGG | + | chr3_3:50983501-50983520 | Msa0456800:CDS | 75.0% | |
| CGTGCACCCCCTCGTGGGGA+AGG | + | chr3_3:50983505-50983524 | Msa0456800:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 50983421 | 50985812 | 50983421 | ID=Msa0456800;Name=Msa0456800 |
| chr3_3 | mRNA | 50983421 | 50985812 | 50983421 | ID=Msa0456800-mRNA-1;Parent=Msa0456800;Name=Msa0456800-mRNA-1;_AED=0.49;_eAED=0.49;_QI=0|0|0|0.33|1|1|3|0|151 |
| chr3_3 | exon | 50983421 | 50983528 | 50983421 | ID=Msa0456800-mRNA-1:exon:9702;Parent=Msa0456800-mRNA-1 |
| chr3_3 | exon | 50984700 | 50984751 | 50984700 | ID=Msa0456800-mRNA-1:exon:9703;Parent=Msa0456800-mRNA-1 |
| chr3_3 | exon | 50985517 | 50985812 | 50985517 | ID=Msa0456800-mRNA-1:exon:9704;Parent=Msa0456800-mRNA-1 |
| chr3_3 | CDS | 50983421 | 50983528 | 50983421 | ID=Msa0456800-mRNA-1:cds;Parent=Msa0456800-mRNA-1 |
| chr3_3 | CDS | 50984700 | 50984751 | 50984700 | ID=Msa0456800-mRNA-1:cds;Parent=Msa0456800-mRNA-1 |
| chr3_3 | CDS | 50985517 | 50985812 | 50985517 | ID=Msa0456800-mRNA-1:cds;Parent=Msa0456800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
