Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0457310 | XP_003590850.2 | 77.489 | 653 | 91 | 4 | 1 | 597 | 1 | 653 | 0.0 | 951 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0457310 | sp|Q9LUZ4|C3H66_ARATH | 50.498 | 602 | 245 | 21 | 21 | 588 | 2 | 584 | 3.36e-174 | 511 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0457310 | G7I4W5 | 77.489 | 653 | 91 | 4 | 1 | 597 | 1 | 653 | 0.0 | 951 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0457310 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0457310 | MtrunA17_Chr1g0187591 | 77.489 | 653 | 91 | 4 | 1 | 597 | 1 | 653 | 0.0 | 951 |
| Msa0457310 | MtrunA17_Chr3g0105131 | 69.947 | 569 | 106 | 6 | 1 | 568 | 1 | 505 | 0.0 | 737 |
| Msa0457310 | MtrunA17_Chr3g0105101 | 78.555 | 429 | 36 | 3 | 37 | 465 | 29 | 401 | 0.0 | 653 |
| Msa0457310 | MtrunA17_Chr5g0430211 | 52.247 | 712 | 237 | 19 | 1 | 622 | 1 | 699 | 0.0 | 620 |
| Msa0457310 | MtrunA17_Chr5g0437251 | 46.526 | 662 | 249 | 15 | 28 | 609 | 25 | 661 | 0.0 | 528 |
| Msa0457310 | MtrunA17_Chr7g0257831 | 40.746 | 670 | 256 | 18 | 30 | 591 | 44 | 680 | 8.43e-143 | 432 |
| Msa0457310 | MtrunA17_Chr3g0113651 | 43.103 | 580 | 208 | 16 | 31 | 589 | 8 | 486 | 1.42e-136 | 409 |
| Msa0457310 | MtrunA17_Chr3g0088521 | 39.137 | 672 | 275 | 23 | 30 | 593 | 42 | 687 | 2.96e-126 | 389 |
| Msa0457310 | MtrunA17_Chr3g0105121 | 54.032 | 372 | 136 | 7 | 227 | 586 | 8 | 356 | 1.55e-115 | 348 |
| Msa0457310 | MtrunA17_Chr1g0171151 | 39.915 | 471 | 222 | 11 | 32 | 454 | 30 | 487 | 2.54e-101 | 320 |
| Msa0457310 | MtrunA17_Chr3g0092171 | 43.597 | 367 | 181 | 5 | 30 | 385 | 80 | 431 | 2.92e-89 | 286 |
| Msa0457310 | MtrunA17_Chr3g0105151 | 57.917 | 240 | 79 | 7 | 388 | 611 | 2 | 235 | 2.06e-71 | 230 |
| Msa0457310 | MtrunA17_Chr3g0105141 | 68.531 | 143 | 44 | 1 | 193 | 334 | 1 | 143 | 3.75e-70 | 224 |
| Msa0457310 | MtrunA17_Chr3g0092221 | 59.444 | 180 | 62 | 5 | 205 | 380 | 137 | 309 | 6.19e-68 | 226 |
| Msa0457310 | MtrunA17_Chr8g0389561 | 47.222 | 216 | 104 | 3 | 172 | 381 | 29 | 240 | 8.11e-58 | 199 |
| Msa0457310 | MtrunA17_Chr3g0105111 | 78.992 | 119 | 12 | 1 | 504 | 622 | 1 | 106 | 6.37e-57 | 187 |
| Msa0457310 | MtrunA17_Chr6g0487481 | 62.121 | 132 | 41 | 1 | 199 | 330 | 83 | 205 | 1.83e-55 | 192 |
| Msa0457310 | MtrunA17_Chr3g0135351 | 54.839 | 155 | 50 | 3 | 218 | 371 | 43 | 178 | 2.97e-53 | 183 |
| Msa0457310 | MtrunA17_Chr2g0324781 | 63.063 | 111 | 41 | 0 | 228 | 338 | 77 | 187 | 9.52e-50 | 178 |
| Msa0457310 | MtrunA17_Chr4g0040391 | 59.813 | 107 | 43 | 0 | 224 | 330 | 56 | 162 | 2.98e-47 | 168 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0457310 | AT5G58620.1 | 50.498 | 602 | 245 | 21 | 21 | 588 | 2 | 584 | 3.42e-175 | 511 |
| Msa0457310 | AT3G55980.1 | 44.497 | 636 | 276 | 18 | 1 | 621 | 1 | 574 | 1.96e-160 | 472 |
| Msa0457310 | AT3G55980.2 | 44.497 | 636 | 276 | 18 | 1 | 621 | 68 | 641 | 1.36e-159 | 473 |
| Msa0457310 | AT2G40140.2 | 43.818 | 639 | 294 | 14 | 1 | 622 | 1 | 591 | 8.27e-159 | 469 |
| Msa0457310 | AT2G40140.1 | 43.818 | 639 | 294 | 14 | 1 | 622 | 1 | 591 | 8.27e-159 | 469 |
| Msa0457310 | AT5G12850.1 | 41.009 | 634 | 275 | 20 | 25 | 570 | 34 | 656 | 4.30e-131 | 401 |
| Msa0457310 | AT2G41900.1 | 46.220 | 463 | 201 | 10 | 25 | 450 | 40 | 491 | 3.27e-126 | 389 |
| Msa0457310 | AT4G29190.1 | 52.326 | 172 | 60 | 2 | 217 | 381 | 68 | 224 | 8.73e-56 | 193 |
| Msa0457310 | AT5G07500.1 | 62.810 | 121 | 45 | 0 | 210 | 330 | 34 | 154 | 3.23e-54 | 185 |
| Msa0457310 | AT2G19810.1 | 64.754 | 122 | 41 | 1 | 213 | 332 | 61 | 182 | 4.89e-54 | 188 |
| Msa0457310 | AT2G25900.2 | 60.465 | 129 | 51 | 0 | 224 | 352 | 86 | 214 | 1.01e-53 | 186 |
| Msa0457310 | AT2G25900.1 | 60.465 | 129 | 51 | 0 | 224 | 352 | 86 | 214 | 1.01e-53 | 186 |
| Msa0457310 | AT1G03790.1 | 53.548 | 155 | 64 | 3 | 195 | 345 | 53 | 203 | 1.57e-50 | 180 |
| Msa0457310 | AT5G44260.1 | 59.375 | 128 | 47 | 2 | 206 | 332 | 42 | 165 | 1.42e-48 | 174 |
Find 143 sgRNAs with CRISPR-Local
Find 322 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAAAACCTACTTGTTTA+AGG | 0.075570 | 3_3:-52015095 | None:intergenic |
| GCTCTTCGTTGTGCTGTTTC+TGG | 0.104817 | 3_3:+52014880 | Msa0457310:CDS |
| CTTATGGTTGCTGCCTTATT+TGG | 0.182687 | 3_3:+52014778 | Msa0457310:CDS |
| CTTACCAATTCAAATGTTAT+TGG | 0.199131 | 3_3:+52015963 | Msa0457310:CDS |
| TTGTCAAACTGGTTTGATTA+AGG | 0.208098 | 3_3:+52014567 | Msa0457310:CDS |
| ATCATCTACGCCTTCTAGTA+TGG | 0.227210 | 3_3:-52015052 | None:intergenic |
| ATGGAGCATTCTACGATTTC+TGG | 0.236897 | 3_3:+52016095 | Msa0457310:CDS |
| TTGATTAAGGAAAATGAATA+TGG | 0.284568 | 3_3:+52014580 | Msa0457310:CDS |
| CACACCCTTGCTTCCAAATA+AGG | 0.291991 | 3_3:-52014791 | None:intergenic |
| ATGAGGAAATCTTATTCTTT+CGG | 0.306520 | 3_3:+52016176 | Msa0457310:CDS |
| CAAGGGCTTATTCTCATGAT+TGG | 0.318225 | 3_3:+52015259 | Msa0457310:CDS |
| TTCACAGATGCTGTTGAAAA+AGG | 0.320014 | 3_3:+52014673 | Msa0457310:CDS |
| GCATTCTACGATTTCTGGTT+GGG | 0.328951 | 3_3:+52016100 | Msa0457310:CDS |
| GTGTCCCTTGCCCCGAGTTT+CGG | 0.333825 | 3_3:+52015352 | Msa0457310:CDS |
| GAACGCAAACCAGCAACTTT+GGG | 0.341182 | 3_3:+52015926 | Msa0457310:CDS |
| CGATCCAATAACATTTGAAT+TGG | 0.345672 | 3_3:-52015967 | None:intergenic |
| AATAGAAAACCTTGTCAAAC+TGG | 0.355053 | 3_3:+52014556 | Msa0457310:CDS |
| GTCTTTCATCCCCTTCAAAT+AGG | 0.355872 | 3_3:+52015823 | Msa0457310:CDS |
| TATTGATCAAATTCCATTGT+TGG | 0.357494 | 3_3:-52016308 | None:intergenic |
| GAGGGTTGGATCGAAGGAAA+TGG | 0.360734 | 3_3:+52014735 | Msa0457310:CDS |
| GCAAACCCTTCTGGTGCATC+TGG | 0.368627 | 3_3:-52015478 | None:intergenic |
| TTCTCGGCATCTGAAGGGTT+GGG | 0.369174 | 3_3:-52015734 | None:intergenic |
| AAGTCGATGTGGTAGGATTA+TGG | 0.369276 | 3_3:+52014704 | Msa0457310:CDS |
| AATGATAGCCCCAAAGTTGC+TGG | 0.380794 | 3_3:-52015935 | None:intergenic |
| CGACCGTTGTATGCTTCTAC+TGG | 0.382257 | 3_3:+52015528 | Msa0457310:CDS |
| AGAACGCAAACCAGCAACTT+TGG | 0.384644 | 3_3:+52015925 | Msa0457310:CDS |
| TTCACCTAGTGCTTCTTCAA+TGG | 0.396899 | 3_3:+52015584 | Msa0457310:CDS |
| TGAAGAGAGGACACCTCTTA+TGG | 0.399251 | 3_3:+52014762 | Msa0457310:CDS |
| TGATGCATCTGCATTGTGAT+TGG | 0.415833 | 3_3:-52015903 | None:intergenic |
| ACAGAACCGCGTCGGGATTA+CGG | 0.416386 | 3_3:-52016355 | None:intergenic |
| GTATCTTCGGTTCAAGGAAT+AGG | 0.421539 | 3_3:+52015019 | Msa0457310:CDS |
| AGGGTTGGATCGAAGGAAAT+GGG | 0.426387 | 3_3:+52014736 | Msa0457310:CDS |
| CTAGTAGTATCTTCGGTTCA+AGG | 0.426572 | 3_3:+52015013 | Msa0457310:CDS |
| ATCTGTTTCTCGGCATCTGA+AGG | 0.426852 | 3_3:-52015740 | None:intergenic |
| GGTGTGTTGTCTTATATTCT+CGG | 0.428366 | 3_3:+52014808 | Msa0457310:CDS |
| TCAGGTAGGGATGGATCAAT+TGG | 0.428778 | 3_3:-52015171 | None:intergenic |
| CGAGTGTCCATTTGTTCACC+CGG | 0.428988 | 3_3:+52015284 | Msa0457310:CDS |
| TCAAAGTGAAGCCTTGTTCA+AGG | 0.431149 | 3_3:+52015241 | Msa0457310:CDS |
| GCATGATCCTTTCCGAAACT+CGG | 0.433294 | 3_3:-52015364 | None:intergenic |
| TTGAAAACTGCACTGAATGC+TGG | 0.433495 | 3_3:+52015762 | Msa0457310:CDS |
| TTTCTCGGCATCTGAAGGGT+TGG | 0.435722 | 3_3:-52015735 | None:intergenic |
| TGCCACGTGGTTCCAGCCAC+AGG | 0.439059 | 3_3:-52015684 | None:intergenic |
| TCTGGTTGGGGCTCGCCTGA+TGG | 0.441010 | 3_3:+52016113 | Msa0457310:CDS |
| TATATCTCATTGTTTATGTC+AGG | 0.444342 | 3_3:-52015189 | None:intergenic |
| TCAGCATCATCGCCTGTGGC+TGG | 0.447105 | 3_3:+52015672 | Msa0457310:CDS |
| TTATGGTATGGAAGGAGGGT+TGG | 0.455006 | 3_3:+52014721 | Msa0457310:CDS |
| TAATCTTTCTTCTCAGTTCG+AGG | 0.455693 | 3_3:-52015147 | None:intergenic |
| TTCTGCTACCTCAGTTGCCA+TGG | 0.458161 | 3_3:+52016076 | Msa0457310:CDS |
| CCATTGATGTGAATGATAAC+TGG | 0.461223 | 3_3:+52014965 | Msa0457310:CDS |
| CCCTATCTGAGCCGCACTCT+CGG | 0.465985 | 3_3:-52014852 | None:intergenic |
| GGCAAAGACAGAACCGCGTC+GGG | 0.470484 | 3_3:-52016362 | None:intergenic |
| TGGAAGGAGGGTTGGATCGA+AGG | 0.473211 | 3_3:+52014729 | Msa0457310:CDS |
| TGCTGCCTTATTTGGAAGCA+AGG | 0.473427 | 3_3:+52014786 | Msa0457310:CDS |
| ACTCTTGCAAGCCTATTTGA+AGG | 0.473796 | 3_3:-52015834 | None:intergenic |
| CCAGTTATCATTCACATCAA+TGG | 0.477903 | 3_3:-52014965 | None:intergenic |
| AATAAGGCAGCAACCATAAG+AGG | 0.478339 | 3_3:-52014775 | None:intergenic |
| ATTGAGTTCATTGCCGCGGA+TGG | 0.478340 | 3_3:-52016150 | None:intergenic |
| ATACTACAACCCATACTAGA+AGG | 0.480130 | 3_3:+52015042 | Msa0457310:CDS |
| GAATGCCATTACGTCATCTT+CGG | 0.481296 | 3_3:-52014653 | None:intergenic |
| TACAACGGTCGAAGCTCCTC+TGG | 0.485266 | 3_3:-52015516 | None:intergenic |
| TGCTCCATGTACAAATGCTC+TGG | 0.486006 | 3_3:-52016383 | None:intergenic |
| CAGGTGTAATGATATTTCCT+TGG | 0.486054 | 3_3:-52015330 | None:intergenic |
| AGCATTCTACGATTTCTGGT+TGG | 0.490186 | 3_3:+52016099 | Msa0457310:CDS |
| AGAACAAGGCTTTGCAAGGA+TGG | 0.491396 | 3_3:+52015453 | Msa0457310:CDS |
| TCGGTTAACATCAACGCGAC+TGG | 0.494406 | 3_3:-52014833 | None:intergenic |
| CATGATCCTTTCCGAAACTC+GGG | 0.495650 | 3_3:-52015363 | None:intergenic |
| AGCCTTGTTCTATATTGAGC+AGG | 0.500362 | 3_3:-52015441 | None:intergenic |
| ACCGAGAGTGCGGCTCAGAT+AGG | 0.501399 | 3_3:+52014851 | Msa0457310:CDS |
| TTTGCCAGAGCATTTGTACA+TGG | 0.501745 | 3_3:+52016379 | Msa0457310:CDS |
| TACTGCGCTCAATAAAGCTC+TGG | 0.504121 | 3_3:-52016025 | None:intergenic |
| CTCATTGTTTATGTCAGGTA+GGG | 0.505295 | 3_3:-52015184 | None:intergenic |
| TGTGAAAGATGCTCCAACAA+TGG | 0.508902 | 3_3:+52016295 | Msa0457310:CDS |
| TCGGTATCTAGTAGTATCTT+CGG | 0.509155 | 3_3:+52015006 | Msa0457310:CDS |
| CATTCTACGATTTCTGGTTG+GGG | 0.510676 | 3_3:+52016101 | Msa0457310:CDS |
| GATGATTTCCTTAAACAAGT+AGG | 0.511967 | 3_3:+52015087 | Msa0457310:CDS |
| CCTTTCCGAAACTCGGGGCA+AGG | 0.514381 | 3_3:-52015357 | None:intergenic |
| CTCTTGCAAGCCTATTTGAA+GGG | 0.516540 | 3_3:-52015833 | None:intergenic |
| CAAAGTGAAGCCTTGTTCAA+GGG | 0.517860 | 3_3:+52015242 | Msa0457310:CDS |
| TGGTAGGATTATGGTATGGA+AGG | 0.522426 | 3_3:+52014713 | Msa0457310:CDS |
| AGGATTATGGTATGGAAGGA+GGG | 0.525824 | 3_3:+52014717 | Msa0457310:CDS |
| CGCCTGATGGAAAATTAGAC+TGG | 0.526081 | 3_3:+52016126 | Msa0457310:CDS |
| AAACTCGGGGCAAGGGACAC+AGG | 0.532559 | 3_3:-52015349 | None:intergenic |
| CTTTATTGAGCGCAGTAGCA+TGG | 0.532911 | 3_3:+52016031 | Msa0457310:CDS |
| TTCAGCCGAAGATGACGTAA+TGG | 0.534190 | 3_3:+52014648 | Msa0457310:CDS |
| TAGGATTATGGTATGGAAGG+AGG | 0.534494 | 3_3:+52014716 | Msa0457310:CDS |
| TTGTTTATGTCAGGTAGGGA+TGG | 0.536185 | 3_3:-52015180 | None:intergenic |
| CCGAGAGTGCGGCTCAGATA+GGG | 0.539522 | 3_3:+52014852 | Msa0457310:CDS |
| ACGCAAGGCGCCGTGATCCA+AGG | 0.541532 | 3_3:+52015313 | Msa0457310:CDS |
| GCTGCCTTATTTGGAAGCAA+GGG | 0.541989 | 3_3:+52014787 | Msa0457310:CDS |
| TCTCATTGTTTATGTCAGGT+AGG | 0.546336 | 3_3:-52015185 | None:intergenic |
| AAGCAAAAGCTTGATAATCT+CGG | 0.547575 | 3_3:-52014920 | None:intergenic |
| TCATCTACGCCTTCTAGTAT+GGG | 0.552732 | 3_3:-52015051 | None:intergenic |
| CGGGTGAACAAATGGACACT+CGG | 0.558339 | 3_3:-52015283 | None:intergenic |
| GATGGAGTCAAAGGTGGCGT+TGG | 0.561844 | 3_3:-52015651 | None:intergenic |
| GCTCTGGCTTTGCTTTGAGA+AGG | 0.563199 | 3_3:-52016009 | None:intergenic |
| TCTGTTTCTCGGCATCTGAA+GGG | 0.564138 | 3_3:-52015739 | None:intergenic |
| GTGCAACGACTTGTTTGTCT+CGG | 0.565690 | 3_3:+52014987 | Msa0457310:CDS |
| CGGAAAGGATCATGCAGCAA+AGG | 0.576344 | 3_3:+52015372 | Msa0457310:CDS |
| CTTTCCGAAACTCGGGGCAA+GGG | 0.578389 | 3_3:-52015356 | None:intergenic |
| GTGGAGCAGCAACACGATGT+AGG | 0.579328 | 3_3:+52015120 | Msa0457310:CDS |
| GGTGAATTTGAATATGATGT+AGG | 0.581011 | 3_3:-52015567 | None:intergenic |
| GATGTGGTAGGATTATGGTA+TGG | 0.583491 | 3_3:+52014709 | Msa0457310:CDS |
| CCTTGCCCCGAGTTTCGGAA+AGG | 0.584921 | 3_3:+52015357 | Msa0457310:CDS |
| ATATAGAACAAGGCTTTGCA+AGG | 0.588932 | 3_3:+52015449 | Msa0457310:CDS |
| TCCATCAGCATCATCGCCTG+TGG | 0.592527 | 3_3:+52015668 | Msa0457310:CDS |
| GCAATGAACTCAATAAAATG+AGG | 0.593274 | 3_3:+52016159 | Msa0457310:CDS |
| AATGATATTTCCTTGGATCA+CGG | 0.593424 | 3_3:-52015323 | None:intergenic |
| GAGTGTCCATTTGTTCACCC+GGG | 0.599662 | 3_3:+52015285 | Msa0457310:CDS |
| AAATAATAAGTCATGTGCAA+CGG | 0.601617 | 3_3:+52014529 | None:intergenic |
| GCCACAGGCGATGATGCTGA+TGG | 0.605560 | 3_3:-52015669 | None:intergenic |
| TGGCAAAGACAGAACCGCGT+CGG | 0.609621 | 3_3:-52016363 | None:intergenic |
| ATGGAACCAGATGCACCAGA+AGG | 0.610080 | 3_3:+52015472 | Msa0457310:CDS |
| TCTTGCAAGCCTATTTGAAG+GGG | 0.615140 | 3_3:-52015832 | None:intergenic |
| GAACATGAAGTCGATGTGGT+AGG | 0.617118 | 3_3:+52014697 | Msa0457310:CDS |
| AGTGTCCATTTGTTCACCCG+GGG | 0.625388 | 3_3:+52015286 | Msa0457310:CDS |
| TGAGAATAAGCCCTTGAACA+AGG | 0.627841 | 3_3:-52015252 | None:intergenic |
| AACGCAAACCAGCAACTTTG+GGG | 0.628398 | 3_3:+52015927 | Msa0457310:CDS |
| GAATCCATTGAAGAAGCACT+AGG | 0.630832 | 3_3:-52015588 | None:intergenic |
| GCAGATTGTATCAAAGAAGA+CGG | 0.633142 | 3_3:-52015627 | None:intergenic |
| TTTGAATATGATGTAGGTGA+AGG | 0.636602 | 3_3:-52015561 | None:intergenic |
| ATGGCAACTGAGGTAGCAGA+AGG | 0.642309 | 3_3:-52016074 | None:intergenic |
| TGGAACCAGATGCACCAGAA+GGG | 0.643509 | 3_3:+52015473 | Msa0457310:CDS |
| ATCCTGCTCAATATAGAACA+AGG | 0.645051 | 3_3:+52015439 | Msa0457310:CDS |
| AGAATGCTCCATGGCAACTG+AGG | 0.645687 | 3_3:-52016084 | None:intergenic |
| AAGGCATCTACTCTGAATTG+TGG | 0.646979 | 3_3:-52015990 | None:intergenic |
| AGGAAATGGGATATGAAGAG+AGG | 0.649200 | 3_3:+52014749 | Msa0457310:CDS |
| AAAATACATCTGGATCGTCG+TGG | 0.649359 | 3_3:-52016244 | None:intergenic |
| GATGATGCTGATGGAGTCAA+AGG | 0.652271 | 3_3:-52015660 | None:intergenic |
| AGAAATCGTAGAATGCTCCA+TGG | 0.657091 | 3_3:-52016093 | None:intergenic |
| AAATTAGACTGGTCCATCCG+CGG | 0.659387 | 3_3:+52016137 | Msa0457310:CDS |
| TTAATCAAACCAGTTTGACA+AGG | 0.662325 | 3_3:-52014565 | None:intergenic |
| ATGATCCTTTCCGAAACTCG+GGG | 0.664716 | 3_3:-52015362 | None:intergenic |
| GTTGATGTTAACCGAGAGTG+CGG | 0.666864 | 3_3:+52014841 | Msa0457310:CDS |
| AGAAACAGCACAACGAAGAG+CGG | 0.669641 | 3_3:-52014878 | None:intergenic |
| AGGCGAACATGAAGTCGATG+TGG | 0.676090 | 3_3:+52014693 | Msa0457310:CDS |
| GATGCTGATGGAGTCAAAGG+TGG | 0.696337 | 3_3:-52015657 | None:intergenic |
| CGCCTGTGGCTGGAACCACG+TGG | 0.709879 | 3_3:+52015682 | Msa0457310:CDS |
| TTGAAGGGGATGAAAGACTG+AGG | 0.712422 | 3_3:-52015818 | None:intergenic |
| GTGTCCATTTGTTCACCCGG+GGG | 0.714093 | 3_3:+52015287 | Msa0457310:CDS |
| CTGAATCTGAGTCTGCCACG+TGG | 0.717188 | 3_3:-52015697 | None:intergenic |
| GATGCTTGTGAATATGCACA+CGG | 0.730998 | 3_3:+52015396 | Msa0457310:CDS |
| GAACCAGTAGAAGCATACAA+CGG | 0.765075 | 3_3:-52015531 | None:intergenic |
| GCAGTGCCGTAATCCCGACG+CGG | 0.828026 | 3_3:+52016349 | Msa0457310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAGTTTTTAAAGTTAGT+AGG | - | chr3_3:52015864-52015883 | None:intergenic | 15.0% |
| !!! | ACTAACTTTAAAAACTTTTT+CGG | + | chr3_3:52015864-52015883 | Msa0457310:CDS | 15.0% |
| !!! | AAAAAGTTTTTAAAGTTAGT+AGG | - | chr3_3:52015864-52015883 | None:intergenic | 15.0% |
| !!! | ACTAACTTTAAAAACTTTTT+CGG | + | chr3_3:52015864-52015883 | Msa0457310:CDS | 15.0% |
| !! | TTGATTAAGGAAAATGAATA+TGG | + | chr3_3:52014580-52014599 | Msa0457310:CDS | 20.0% |
| !!! | CTAACTTTAAAAACTTTTTC+GGG | + | chr3_3:52015865-52015884 | Msa0457310:CDS | 20.0% |
| !! | TTGATTAAGGAAAATGAATA+TGG | + | chr3_3:52014580-52014599 | Msa0457310:CDS | 20.0% |
| !!! | CTAACTTTAAAAACTTTTTC+GGG | + | chr3_3:52015865-52015884 | Msa0457310:CDS | 20.0% |
| ! | ATTGAAAACCTACTTGTTTA+AGG | - | chr3_3:52015098-52015117 | None:intergenic | 25.0% |
| !! | TAAACAAGTAGGTTTTCAAT+TGG | + | chr3_3:52015098-52015117 | Msa0457310:CDS | 25.0% |
| ! | TATATCTCATTGTTTATGTC+AGG | - | chr3_3:52015192-52015211 | None:intergenic | 25.0% |
| ! | CTTACCAATTCAAATGTTAT+TGG | + | chr3_3:52015963-52015982 | Msa0457310:CDS | 25.0% |
| ! | ATGAGGAAATCTTATTCTTT+CGG | + | chr3_3:52016176-52016195 | Msa0457310:CDS | 25.0% |
| !!! | TATTTTTAAGGCATGAATCT+TGG | + | chr3_3:52016261-52016280 | Msa0457310:CDS | 25.0% |
| !!! | ATTTTTAAGGCATGAATCTT+GGG | + | chr3_3:52016262-52016281 | Msa0457310:CDS | 25.0% |
| ! | TATTGATCAAATTCCATTGT+TGG | - | chr3_3:52016311-52016330 | None:intergenic | 25.0% |
| ! | ATTGAAAACCTACTTGTTTA+AGG | - | chr3_3:52015098-52015117 | None:intergenic | 25.0% |
| !! | TAAACAAGTAGGTTTTCAAT+TGG | + | chr3_3:52015098-52015117 | Msa0457310:CDS | 25.0% |
| ! | TATATCTCATTGTTTATGTC+AGG | - | chr3_3:52015192-52015211 | None:intergenic | 25.0% |
| ! | CTTACCAATTCAAATGTTAT+TGG | + | chr3_3:52015963-52015982 | Msa0457310:CDS | 25.0% |
| ! | ATGAGGAAATCTTATTCTTT+CGG | + | chr3_3:52016176-52016195 | Msa0457310:CDS | 25.0% |
| !!! | TATTTTTAAGGCATGAATCT+TGG | + | chr3_3:52016261-52016280 | Msa0457310:CDS | 25.0% |
| !!! | ATTTTTAAGGCATGAATCTT+GGG | + | chr3_3:52016262-52016281 | Msa0457310:CDS | 25.0% |
| ! | TATTGATCAAATTCCATTGT+TGG | - | chr3_3:52016311-52016330 | None:intergenic | 25.0% |
| AATAGAAAACCTTGTCAAAC+TGG | + | chr3_3:52014556-52014575 | Msa0457310:CDS | 30.0% | |
| TTAATCAAACCAGTTTGACA+AGG | - | chr3_3:52014568-52014587 | None:intergenic | 30.0% | |
| !! | TTGTCAAACTGGTTTGATTA+AGG | + | chr3_3:52014567-52014586 | Msa0457310:CDS | 30.0% |
| ! | AAGCAAAAGCTTGATAATCT+CGG | - | chr3_3:52014923-52014942 | None:intergenic | 30.0% |
| GATGATTTCCTTAAACAAGT+AGG | + | chr3_3:52015087-52015106 | Msa0457310:CDS | 30.0% | |
| AATGATATTTCCTTGGATCA+CGG | - | chr3_3:52015326-52015345 | None:intergenic | 30.0% | |
| TTTGAATATGATGTAGGTGA+AGG | - | chr3_3:52015564-52015583 | None:intergenic | 30.0% | |
| GGTGAATTTGAATATGATGT+AGG | - | chr3_3:52015570-52015589 | None:intergenic | 30.0% | |
| CGATCCAATAACATTTGAAT+TGG | - | chr3_3:52015970-52015989 | None:intergenic | 30.0% | |
| GCAATGAACTCAATAAAATG+AGG | + | chr3_3:52016159-52016178 | Msa0457310:CDS | 30.0% | |
| !! | ACGATCCAGATGTATTTTTA+AGG | + | chr3_3:52016249-52016268 | Msa0457310:CDS | 30.0% |
| TCATGCCTTAAAAATACATC+TGG | - | chr3_3:52016257-52016276 | None:intergenic | 30.0% | |
| AATAGAAAACCTTGTCAAAC+TGG | + | chr3_3:52014556-52014575 | Msa0457310:CDS | 30.0% | |
| TTAATCAAACCAGTTTGACA+AGG | - | chr3_3:52014568-52014587 | None:intergenic | 30.0% | |
| !! | TTGTCAAACTGGTTTGATTA+AGG | + | chr3_3:52014567-52014586 | Msa0457310:CDS | 30.0% |
| ! | AAGCAAAAGCTTGATAATCT+CGG | - | chr3_3:52014923-52014942 | None:intergenic | 30.0% |
| GATGATTTCCTTAAACAAGT+AGG | + | chr3_3:52015087-52015106 | Msa0457310:CDS | 30.0% | |
| AATGATATTTCCTTGGATCA+CGG | - | chr3_3:52015326-52015345 | None:intergenic | 30.0% | |
| TTTGAATATGATGTAGGTGA+AGG | - | chr3_3:52015564-52015583 | None:intergenic | 30.0% | |
| GGTGAATTTGAATATGATGT+AGG | - | chr3_3:52015570-52015589 | None:intergenic | 30.0% | |
| CGATCCAATAACATTTGAAT+TGG | - | chr3_3:52015970-52015989 | None:intergenic | 30.0% | |
| GCAATGAACTCAATAAAATG+AGG | + | chr3_3:52016159-52016178 | Msa0457310:CDS | 30.0% | |
| !! | ACGATCCAGATGTATTTTTA+AGG | + | chr3_3:52016249-52016268 | Msa0457310:CDS | 30.0% |
| TCATGCCTTAAAAATACATC+TGG | - | chr3_3:52016257-52016276 | None:intergenic | 30.0% | |
| TTCACAGATGCTGTTGAAAA+AGG | + | chr3_3:52014673-52014692 | Msa0457310:CDS | 35.0% | |
| GGTGTGTTGTCTTATATTCT+CGG | + | chr3_3:52014808-52014827 | Msa0457310:CDS | 35.0% | |
| CCAGTTATCATTCACATCAA+TGG | - | chr3_3:52014968-52014987 | None:intergenic | 35.0% | |
| CCATTGATGTGAATGATAAC+TGG | + | chr3_3:52014965-52014984 | Msa0457310:CDS | 35.0% | |
| TCGGTATCTAGTAGTATCTT+CGG | + | chr3_3:52015006-52015025 | Msa0457310:CDS | 35.0% | |
| ATACTACAACCCATACTAGA+AGG | + | chr3_3:52015042-52015061 | Msa0457310:CDS | 35.0% | |
| ! | ACAAGTAGGTTTTCAATTGG+TGG | + | chr3_3:52015101-52015120 | Msa0457310:CDS | 35.0% |
| TAATCTTTCTTCTCAGTTCG+AGG | - | chr3_3:52015150-52015169 | None:intergenic | 35.0% | |
| CTCATTGTTTATGTCAGGTA+GGG | - | chr3_3:52015187-52015206 | None:intergenic | 35.0% | |
| TCTCATTGTTTATGTCAGGT+AGG | - | chr3_3:52015188-52015207 | None:intergenic | 35.0% | |
| CAGGTGTAATGATATTTCCT+TGG | - | chr3_3:52015333-52015352 | None:intergenic | 35.0% | |
| ATCCTGCTCAATATAGAACA+AGG | + | chr3_3:52015439-52015458 | Msa0457310:CDS | 35.0% | |
| ATATAGAACAAGGCTTTGCA+AGG | + | chr3_3:52015449-52015468 | Msa0457310:CDS | 35.0% | |
| GCAGATTGTATCAAAGAAGA+CGG | - | chr3_3:52015630-52015649 | None:intergenic | 35.0% | |
| !! | GCAGTTTTCAATCTGTTTCT+CGG | - | chr3_3:52015753-52015772 | None:intergenic | 35.0% |
| ! | TTTTATTGAGTTCATTGCCG+CGG | - | chr3_3:52016157-52016176 | None:intergenic | 35.0% |
| TTCACAGATGCTGTTGAAAA+AGG | + | chr3_3:52014673-52014692 | Msa0457310:CDS | 35.0% | |
| GGTGTGTTGTCTTATATTCT+CGG | + | chr3_3:52014808-52014827 | Msa0457310:CDS | 35.0% | |
| CCAGTTATCATTCACATCAA+TGG | - | chr3_3:52014968-52014987 | None:intergenic | 35.0% | |
| CCATTGATGTGAATGATAAC+TGG | + | chr3_3:52014965-52014984 | Msa0457310:CDS | 35.0% | |
| TCGGTATCTAGTAGTATCTT+CGG | + | chr3_3:52015006-52015025 | Msa0457310:CDS | 35.0% | |
| ATACTACAACCCATACTAGA+AGG | + | chr3_3:52015042-52015061 | Msa0457310:CDS | 35.0% | |
| ! | ACAAGTAGGTTTTCAATTGG+TGG | + | chr3_3:52015101-52015120 | Msa0457310:CDS | 35.0% |
| TAATCTTTCTTCTCAGTTCG+AGG | - | chr3_3:52015150-52015169 | None:intergenic | 35.0% | |
| CTCATTGTTTATGTCAGGTA+GGG | - | chr3_3:52015187-52015206 | None:intergenic | 35.0% | |
| TCTCATTGTTTATGTCAGGT+AGG | - | chr3_3:52015188-52015207 | None:intergenic | 35.0% | |
| CAGGTGTAATGATATTTCCT+TGG | - | chr3_3:52015333-52015352 | None:intergenic | 35.0% | |
| ATCCTGCTCAATATAGAACA+AGG | + | chr3_3:52015439-52015458 | Msa0457310:CDS | 35.0% | |
| ATATAGAACAAGGCTTTGCA+AGG | + | chr3_3:52015449-52015468 | Msa0457310:CDS | 35.0% | |
| GCAGATTGTATCAAAGAAGA+CGG | - | chr3_3:52015630-52015649 | None:intergenic | 35.0% | |
| !! | GCAGTTTTCAATCTGTTTCT+CGG | - | chr3_3:52015753-52015772 | None:intergenic | 35.0% |
| ! | TTTTATTGAGTTCATTGCCG+CGG | - | chr3_3:52016157-52016176 | None:intergenic | 35.0% |
| GAATGCCATTACGTCATCTT+CGG | - | chr3_3:52014656-52014675 | None:intergenic | 40.0% | |
| AAGTCGATGTGGTAGGATTA+TGG | + | chr3_3:52014704-52014723 | Msa0457310:CDS | 40.0% | |
| GATGTGGTAGGATTATGGTA+TGG | + | chr3_3:52014709-52014728 | Msa0457310:CDS | 40.0% | |
| TGGTAGGATTATGGTATGGA+AGG | + | chr3_3:52014713-52014732 | Msa0457310:CDS | 40.0% | |
| TAGGATTATGGTATGGAAGG+AGG | + | chr3_3:52014716-52014735 | Msa0457310:CDS | 40.0% | |
| AGGATTATGGTATGGAAGGA+GGG | + | chr3_3:52014717-52014736 | Msa0457310:CDS | 40.0% | |
| AGGAAATGGGATATGAAGAG+AGG | + | chr3_3:52014749-52014768 | Msa0457310:CDS | 40.0% | |
| AATAAGGCAGCAACCATAAG+AGG | - | chr3_3:52014778-52014797 | None:intergenic | 40.0% | |
| ! | CTTATGGTTGCTGCCTTATT+TGG | + | chr3_3:52014778-52014797 | Msa0457310:CDS | 40.0% |
| CTAGTAGTATCTTCGGTTCA+AGG | + | chr3_3:52015013-52015032 | Msa0457310:CDS | 40.0% | |
| GTATCTTCGGTTCAAGGAAT+AGG | + | chr3_3:52015019-52015038 | Msa0457310:CDS | 40.0% | |
| TCATCTACGCCTTCTAGTAT+GGG | - | chr3_3:52015054-52015073 | None:intergenic | 40.0% | |
| ATCATCTACGCCTTCTAGTA+TGG | - | chr3_3:52015055-52015074 | None:intergenic | 40.0% | |
| TTGTTTATGTCAGGTAGGGA+TGG | - | chr3_3:52015183-52015202 | None:intergenic | 40.0% | |
| !! | TCAAAGTGAAGCCTTGTTCA+AGG | + | chr3_3:52015241-52015260 | Msa0457310:CDS | 40.0% |
| !! | CAAAGTGAAGCCTTGTTCAA+GGG | + | chr3_3:52015242-52015261 | Msa0457310:CDS | 40.0% |
| TGAGAATAAGCCCTTGAACA+AGG | - | chr3_3:52015255-52015274 | None:intergenic | 40.0% | |
| CAAGGGCTTATTCTCATGAT+TGG | + | chr3_3:52015259-52015278 | Msa0457310:CDS | 40.0% | |
| GATGCTTGTGAATATGCACA+CGG | + | chr3_3:52015396-52015415 | Msa0457310:CDS | 40.0% | |
| !! | CACACGGTATTTTTGAATGC+TGG | + | chr3_3:52015412-52015431 | Msa0457310:CDS | 40.0% |
| !! | AGCCTTGTTCTATATTGAGC+AGG | - | chr3_3:52015444-52015463 | None:intergenic | 40.0% |
| AGCAAAAAAGCAAACCCTTC+TGG | - | chr3_3:52015490-52015509 | None:intergenic | 40.0% | |
| !!! | CTTTTTTGCTCACAAACCAG+AGG | + | chr3_3:52015500-52015519 | Msa0457310:CDS | 40.0% |
| ! | GAACCAGTAGAAGCATACAA+CGG | - | chr3_3:52015534-52015553 | None:intergenic | 40.0% |
| TTCACCTAGTGCTTCTTCAA+TGG | + | chr3_3:52015584-52015603 | Msa0457310:CDS | 40.0% | |
| !! | GAATCCATTGAAGAAGCACT+AGG | - | chr3_3:52015591-52015610 | None:intergenic | 40.0% |
| TTGAAAACTGCACTGAATGC+TGG | + | chr3_3:52015762-52015781 | Msa0457310:CDS | 40.0% | |
| GTCTTTCATCCCCTTCAAAT+AGG | + | chr3_3:52015823-52015842 | Msa0457310:CDS | 40.0% | |
| TCTTGCAAGCCTATTTGAAG+GGG | - | chr3_3:52015835-52015854 | None:intergenic | 40.0% | |
| CTCTTGCAAGCCTATTTGAA+GGG | - | chr3_3:52015836-52015855 | None:intergenic | 40.0% | |
| ACTCTTGCAAGCCTATTTGA+AGG | - | chr3_3:52015837-52015856 | None:intergenic | 40.0% | |
| TGATGCATCTGCATTGTGAT+TGG | - | chr3_3:52015906-52015925 | None:intergenic | 40.0% | |
| ! | AAGGCATCTACTCTGAATTG+TGG | - | chr3_3:52015993-52016012 | None:intergenic | 40.0% |
| AGAAATCGTAGAATGCTCCA+TGG | - | chr3_3:52016096-52016115 | None:intergenic | 40.0% | |
| ! | ATGGAGCATTCTACGATTTC+TGG | + | chr3_3:52016095-52016114 | Msa0457310:CDS | 40.0% |
| !! | AGCATTCTACGATTTCTGGT+TGG | + | chr3_3:52016099-52016118 | Msa0457310:CDS | 40.0% |
| !! | GCATTCTACGATTTCTGGTT+GGG | + | chr3_3:52016100-52016119 | Msa0457310:CDS | 40.0% |
| !! | CATTCTACGATTTCTGGTTG+GGG | + | chr3_3:52016101-52016120 | Msa0457310:CDS | 40.0% |
| ! | GACCAGTCTAATTTTCCATC+AGG | - | chr3_3:52016131-52016150 | None:intergenic | 40.0% |
| AAAATACATCTGGATCGTCG+TGG | - | chr3_3:52016247-52016266 | None:intergenic | 40.0% | |
| TGTGAAAGATGCTCCAACAA+TGG | + | chr3_3:52016295-52016314 | Msa0457310:CDS | 40.0% | |
| ! | TTTGCCAGAGCATTTGTACA+TGG | + | chr3_3:52016379-52016398 | Msa0457310:CDS | 40.0% |
| GAATGCCATTACGTCATCTT+CGG | - | chr3_3:52014656-52014675 | None:intergenic | 40.0% | |
| AAGTCGATGTGGTAGGATTA+TGG | + | chr3_3:52014704-52014723 | Msa0457310:CDS | 40.0% | |
| GATGTGGTAGGATTATGGTA+TGG | + | chr3_3:52014709-52014728 | Msa0457310:CDS | 40.0% | |
| TGGTAGGATTATGGTATGGA+AGG | + | chr3_3:52014713-52014732 | Msa0457310:CDS | 40.0% | |
| TAGGATTATGGTATGGAAGG+AGG | + | chr3_3:52014716-52014735 | Msa0457310:CDS | 40.0% | |
| AGGATTATGGTATGGAAGGA+GGG | + | chr3_3:52014717-52014736 | Msa0457310:CDS | 40.0% | |
| AGGAAATGGGATATGAAGAG+AGG | + | chr3_3:52014749-52014768 | Msa0457310:CDS | 40.0% | |
| AATAAGGCAGCAACCATAAG+AGG | - | chr3_3:52014778-52014797 | None:intergenic | 40.0% | |
| ! | CTTATGGTTGCTGCCTTATT+TGG | + | chr3_3:52014778-52014797 | Msa0457310:CDS | 40.0% |
| CTAGTAGTATCTTCGGTTCA+AGG | + | chr3_3:52015013-52015032 | Msa0457310:CDS | 40.0% | |
| GTATCTTCGGTTCAAGGAAT+AGG | + | chr3_3:52015019-52015038 | Msa0457310:CDS | 40.0% | |
| TCATCTACGCCTTCTAGTAT+GGG | - | chr3_3:52015054-52015073 | None:intergenic | 40.0% | |
| ATCATCTACGCCTTCTAGTA+TGG | - | chr3_3:52015055-52015074 | None:intergenic | 40.0% | |
| TTGTTTATGTCAGGTAGGGA+TGG | - | chr3_3:52015183-52015202 | None:intergenic | 40.0% | |
| !! | TCAAAGTGAAGCCTTGTTCA+AGG | + | chr3_3:52015241-52015260 | Msa0457310:CDS | 40.0% |
| !! | CAAAGTGAAGCCTTGTTCAA+GGG | + | chr3_3:52015242-52015261 | Msa0457310:CDS | 40.0% |
| TGAGAATAAGCCCTTGAACA+AGG | - | chr3_3:52015255-52015274 | None:intergenic | 40.0% | |
| CAAGGGCTTATTCTCATGAT+TGG | + | chr3_3:52015259-52015278 | Msa0457310:CDS | 40.0% | |
| GATGCTTGTGAATATGCACA+CGG | + | chr3_3:52015396-52015415 | Msa0457310:CDS | 40.0% | |
| !! | CACACGGTATTTTTGAATGC+TGG | + | chr3_3:52015412-52015431 | Msa0457310:CDS | 40.0% |
| !! | AGCCTTGTTCTATATTGAGC+AGG | - | chr3_3:52015444-52015463 | None:intergenic | 40.0% |
| AGCAAAAAAGCAAACCCTTC+TGG | - | chr3_3:52015490-52015509 | None:intergenic | 40.0% | |
| !!! | CTTTTTTGCTCACAAACCAG+AGG | + | chr3_3:52015500-52015519 | Msa0457310:CDS | 40.0% |
| ! | GAACCAGTAGAAGCATACAA+CGG | - | chr3_3:52015534-52015553 | None:intergenic | 40.0% |
| TTCACCTAGTGCTTCTTCAA+TGG | + | chr3_3:52015584-52015603 | Msa0457310:CDS | 40.0% | |
| !! | GAATCCATTGAAGAAGCACT+AGG | - | chr3_3:52015591-52015610 | None:intergenic | 40.0% |
| TTGAAAACTGCACTGAATGC+TGG | + | chr3_3:52015762-52015781 | Msa0457310:CDS | 40.0% | |
| GTCTTTCATCCCCTTCAAAT+AGG | + | chr3_3:52015823-52015842 | Msa0457310:CDS | 40.0% | |
| TCTTGCAAGCCTATTTGAAG+GGG | - | chr3_3:52015835-52015854 | None:intergenic | 40.0% | |
| CTCTTGCAAGCCTATTTGAA+GGG | - | chr3_3:52015836-52015855 | None:intergenic | 40.0% | |
| ACTCTTGCAAGCCTATTTGA+AGG | - | chr3_3:52015837-52015856 | None:intergenic | 40.0% | |
| TGATGCATCTGCATTGTGAT+TGG | - | chr3_3:52015906-52015925 | None:intergenic | 40.0% | |
| ! | AAGGCATCTACTCTGAATTG+TGG | - | chr3_3:52015993-52016012 | None:intergenic | 40.0% |
| AGAAATCGTAGAATGCTCCA+TGG | - | chr3_3:52016096-52016115 | None:intergenic | 40.0% | |
| ! | ATGGAGCATTCTACGATTTC+TGG | + | chr3_3:52016095-52016114 | Msa0457310:CDS | 40.0% |
| !! | AGCATTCTACGATTTCTGGT+TGG | + | chr3_3:52016099-52016118 | Msa0457310:CDS | 40.0% |
| !! | GCATTCTACGATTTCTGGTT+GGG | + | chr3_3:52016100-52016119 | Msa0457310:CDS | 40.0% |
| !! | CATTCTACGATTTCTGGTTG+GGG | + | chr3_3:52016101-52016120 | Msa0457310:CDS | 40.0% |
| ! | GACCAGTCTAATTTTCCATC+AGG | - | chr3_3:52016131-52016150 | None:intergenic | 40.0% |
| AAAATACATCTGGATCGTCG+TGG | - | chr3_3:52016247-52016266 | None:intergenic | 40.0% | |
| TGTGAAAGATGCTCCAACAA+TGG | + | chr3_3:52016295-52016314 | Msa0457310:CDS | 40.0% | |
| ! | TTTGCCAGAGCATTTGTACA+TGG | + | chr3_3:52016379-52016398 | Msa0457310:CDS | 40.0% |
| TTCAGCCGAAGATGACGTAA+TGG | + | chr3_3:52014648-52014667 | Msa0457310:CDS | 45.0% | |
| GAACATGAAGTCGATGTGGT+AGG | + | chr3_3:52014697-52014716 | Msa0457310:CDS | 45.0% | |
| TTATGGTATGGAAGGAGGGT+TGG | + | chr3_3:52014721-52014740 | Msa0457310:CDS | 45.0% | |
| AGGGTTGGATCGAAGGAAAT+GGG | + | chr3_3:52014736-52014755 | Msa0457310:CDS | 45.0% | |
| TGAAGAGAGGACACCTCTTA+TGG | + | chr3_3:52014762-52014781 | Msa0457310:CDS | 45.0% | |
| !! | TGCTGCCTTATTTGGAAGCA+AGG | + | chr3_3:52014786-52014805 | Msa0457310:CDS | 45.0% |
| !! | GCTGCCTTATTTGGAAGCAA+GGG | + | chr3_3:52014787-52014806 | Msa0457310:CDS | 45.0% |
| CACACCCTTGCTTCCAAATA+AGG | - | chr3_3:52014794-52014813 | None:intergenic | 45.0% | |
| GTTGATGTTAACCGAGAGTG+CGG | + | chr3_3:52014841-52014860 | Msa0457310:CDS | 45.0% | |
| AGAAACAGCACAACGAAGAG+CGG | - | chr3_3:52014881-52014900 | None:intergenic | 45.0% | |
| ! | GTGCAACGACTTGTTTGTCT+CGG | + | chr3_3:52014987-52015006 | Msa0457310:CDS | 45.0% |
| TCAGGTAGGGATGGATCAAT+TGG | - | chr3_3:52015174-52015193 | None:intergenic | 45.0% | |
| ATGATCCTTTCCGAAACTCG+GGG | - | chr3_3:52015365-52015384 | None:intergenic | 45.0% | |
| CATGATCCTTTCCGAAACTC+GGG | - | chr3_3:52015366-52015385 | None:intergenic | 45.0% | |
| GCATGATCCTTTCCGAAACT+CGG | - | chr3_3:52015367-52015386 | None:intergenic | 45.0% | |
| AGAACAAGGCTTTGCAAGGA+TGG | + | chr3_3:52015453-52015472 | Msa0457310:CDS | 45.0% | |
| GATGATGCTGATGGAGTCAA+AGG | - | chr3_3:52015663-52015682 | None:intergenic | 45.0% | |
| ! | TCTGTTTCTCGGCATCTGAA+GGG | - | chr3_3:52015742-52015761 | None:intergenic | 45.0% |
| ! | ATCTGTTTCTCGGCATCTGA+AGG | - | chr3_3:52015743-52015762 | None:intergenic | 45.0% |
| TTGAAGGGGATGAAAGACTG+AGG | - | chr3_3:52015821-52015840 | None:intergenic | 45.0% | |
| AGAACGCAAACCAGCAACTT+TGG | + | chr3_3:52015925-52015944 | Msa0457310:CDS | 45.0% | |
| GAACGCAAACCAGCAACTTT+GGG | + | chr3_3:52015926-52015945 | Msa0457310:CDS | 45.0% | |
| AACGCAAACCAGCAACTTTG+GGG | + | chr3_3:52015927-52015946 | Msa0457310:CDS | 45.0% | |
| AATGATAGCCCCAAAGTTGC+TGG | - | chr3_3:52015938-52015957 | None:intergenic | 45.0% | |
| TACTGCGCTCAATAAAGCTC+TGG | - | chr3_3:52016028-52016047 | None:intergenic | 45.0% | |
| CTTTATTGAGCGCAGTAGCA+TGG | + | chr3_3:52016031-52016050 | Msa0457310:CDS | 45.0% | |
| CGCCTGATGGAAAATTAGAC+TGG | + | chr3_3:52016126-52016145 | Msa0457310:CDS | 45.0% | |
| ! | AAATTAGACTGGTCCATCCG+CGG | + | chr3_3:52016137-52016156 | Msa0457310:CDS | 45.0% |
| TGCTCCATGTACAAATGCTC+TGG | - | chr3_3:52016386-52016405 | None:intergenic | 45.0% | |
| TTCAGCCGAAGATGACGTAA+TGG | + | chr3_3:52014648-52014667 | Msa0457310:CDS | 45.0% | |
| GAACATGAAGTCGATGTGGT+AGG | + | chr3_3:52014697-52014716 | Msa0457310:CDS | 45.0% | |
| TTATGGTATGGAAGGAGGGT+TGG | + | chr3_3:52014721-52014740 | Msa0457310:CDS | 45.0% | |
| AGGGTTGGATCGAAGGAAAT+GGG | + | chr3_3:52014736-52014755 | Msa0457310:CDS | 45.0% | |
| TGAAGAGAGGACACCTCTTA+TGG | + | chr3_3:52014762-52014781 | Msa0457310:CDS | 45.0% | |
| !! | TGCTGCCTTATTTGGAAGCA+AGG | + | chr3_3:52014786-52014805 | Msa0457310:CDS | 45.0% |
| !! | GCTGCCTTATTTGGAAGCAA+GGG | + | chr3_3:52014787-52014806 | Msa0457310:CDS | 45.0% |
| CACACCCTTGCTTCCAAATA+AGG | - | chr3_3:52014794-52014813 | None:intergenic | 45.0% | |
| GTTGATGTTAACCGAGAGTG+CGG | + | chr3_3:52014841-52014860 | Msa0457310:CDS | 45.0% | |
| AGAAACAGCACAACGAAGAG+CGG | - | chr3_3:52014881-52014900 | None:intergenic | 45.0% | |
| ! | GTGCAACGACTTGTTTGTCT+CGG | + | chr3_3:52014987-52015006 | Msa0457310:CDS | 45.0% |
| TCAGGTAGGGATGGATCAAT+TGG | - | chr3_3:52015174-52015193 | None:intergenic | 45.0% | |
| ATGATCCTTTCCGAAACTCG+GGG | - | chr3_3:52015365-52015384 | None:intergenic | 45.0% | |
| CATGATCCTTTCCGAAACTC+GGG | - | chr3_3:52015366-52015385 | None:intergenic | 45.0% | |
| GCATGATCCTTTCCGAAACT+CGG | - | chr3_3:52015367-52015386 | None:intergenic | 45.0% | |
| AGAACAAGGCTTTGCAAGGA+TGG | + | chr3_3:52015453-52015472 | Msa0457310:CDS | 45.0% | |
| GATGATGCTGATGGAGTCAA+AGG | - | chr3_3:52015663-52015682 | None:intergenic | 45.0% | |
| ! | TCTGTTTCTCGGCATCTGAA+GGG | - | chr3_3:52015742-52015761 | None:intergenic | 45.0% |
| ! | ATCTGTTTCTCGGCATCTGA+AGG | - | chr3_3:52015743-52015762 | None:intergenic | 45.0% |
| TTGAAGGGGATGAAAGACTG+AGG | - | chr3_3:52015821-52015840 | None:intergenic | 45.0% | |
| AGAACGCAAACCAGCAACTT+TGG | + | chr3_3:52015925-52015944 | Msa0457310:CDS | 45.0% | |
| GAACGCAAACCAGCAACTTT+GGG | + | chr3_3:52015926-52015945 | Msa0457310:CDS | 45.0% | |
| AACGCAAACCAGCAACTTTG+GGG | + | chr3_3:52015927-52015946 | Msa0457310:CDS | 45.0% | |
| AATGATAGCCCCAAAGTTGC+TGG | - | chr3_3:52015938-52015957 | None:intergenic | 45.0% | |
| TACTGCGCTCAATAAAGCTC+TGG | - | chr3_3:52016028-52016047 | None:intergenic | 45.0% | |
| CTTTATTGAGCGCAGTAGCA+TGG | + | chr3_3:52016031-52016050 | Msa0457310:CDS | 45.0% | |
| CGCCTGATGGAAAATTAGAC+TGG | + | chr3_3:52016126-52016145 | Msa0457310:CDS | 45.0% | |
| ! | AAATTAGACTGGTCCATCCG+CGG | + | chr3_3:52016137-52016156 | Msa0457310:CDS | 45.0% |
| TGCTCCATGTACAAATGCTC+TGG | - | chr3_3:52016386-52016405 | None:intergenic | 45.0% | |
| AGGCGAACATGAAGTCGATG+TGG | + | chr3_3:52014693-52014712 | Msa0457310:CDS | 50.0% | |
| GAGGGTTGGATCGAAGGAAA+TGG | + | chr3_3:52014735-52014754 | Msa0457310:CDS | 50.0% | |
| TCGGTTAACATCAACGCGAC+TGG | - | chr3_3:52014836-52014855 | None:intergenic | 50.0% | |
| !! | GCTCTTCGTTGTGCTGTTTC+TGG | + | chr3_3:52014880-52014899 | Msa0457310:CDS | 50.0% |
| CGGGTGAACAAATGGACACT+CGG | - | chr3_3:52015286-52015305 | None:intergenic | 50.0% | |
| CGAGTGTCCATTTGTTCACC+CGG | + | chr3_3:52015284-52015303 | Msa0457310:CDS | 50.0% | |
| GAGTGTCCATTTGTTCACCC+GGG | + | chr3_3:52015285-52015304 | Msa0457310:CDS | 50.0% | |
| AGTGTCCATTTGTTCACCCG+GGG | + | chr3_3:52015286-52015305 | Msa0457310:CDS | 50.0% | |
| ! | TTTTCCCCCGGGTGAACAAA+TGG | - | chr3_3:52015294-52015313 | None:intergenic | 50.0% |
| CGGAAAGGATCATGCAGCAA+AGG | + | chr3_3:52015372-52015391 | Msa0457310:CDS | 50.0% | |
| ATGGAACCAGATGCACCAGA+AGG | + | chr3_3:52015472-52015491 | Msa0457310:CDS | 50.0% | |
| TGGAACCAGATGCACCAGAA+GGG | + | chr3_3:52015473-52015492 | Msa0457310:CDS | 50.0% | |
| CGACCGTTGTATGCTTCTAC+TGG | + | chr3_3:52015528-52015547 | Msa0457310:CDS | 50.0% | |
| GATGCTGATGGAGTCAAAGG+TGG | - | chr3_3:52015660-52015679 | None:intergenic | 50.0% | |
| TTCTCGGCATCTGAAGGGTT+GGG | - | chr3_3:52015737-52015756 | None:intergenic | 50.0% | |
| TTTCTCGGCATCTGAAGGGT+TGG | - | chr3_3:52015738-52015757 | None:intergenic | 50.0% | |
| !! | GCTCTGGCTTTGCTTTGAGA+AGG | - | chr3_3:52016012-52016031 | None:intergenic | 50.0% |
| ATGGCAACTGAGGTAGCAGA+AGG | - | chr3_3:52016077-52016096 | None:intergenic | 50.0% | |
| TTCTGCTACCTCAGTTGCCA+TGG | + | chr3_3:52016076-52016095 | Msa0457310:CDS | 50.0% | |
| AGAATGCTCCATGGCAACTG+AGG | - | chr3_3:52016087-52016106 | None:intergenic | 50.0% | |
| ATTGAGTTCATTGCCGCGGA+TGG | - | chr3_3:52016153-52016172 | None:intergenic | 50.0% | |
| AGGCGAACATGAAGTCGATG+TGG | + | chr3_3:52014693-52014712 | Msa0457310:CDS | 50.0% | |
| GAGGGTTGGATCGAAGGAAA+TGG | + | chr3_3:52014735-52014754 | Msa0457310:CDS | 50.0% | |
| TCGGTTAACATCAACGCGAC+TGG | - | chr3_3:52014836-52014855 | None:intergenic | 50.0% | |
| !! | GCTCTTCGTTGTGCTGTTTC+TGG | + | chr3_3:52014880-52014899 | Msa0457310:CDS | 50.0% |
| CGGGTGAACAAATGGACACT+CGG | - | chr3_3:52015286-52015305 | None:intergenic | 50.0% | |
| CGAGTGTCCATTTGTTCACC+CGG | + | chr3_3:52015284-52015303 | Msa0457310:CDS | 50.0% | |
| GAGTGTCCATTTGTTCACCC+GGG | + | chr3_3:52015285-52015304 | Msa0457310:CDS | 50.0% | |
| AGTGTCCATTTGTTCACCCG+GGG | + | chr3_3:52015286-52015305 | Msa0457310:CDS | 50.0% | |
| ! | TTTTCCCCCGGGTGAACAAA+TGG | - | chr3_3:52015294-52015313 | None:intergenic | 50.0% |
| CGGAAAGGATCATGCAGCAA+AGG | + | chr3_3:52015372-52015391 | Msa0457310:CDS | 50.0% | |
| ATGGAACCAGATGCACCAGA+AGG | + | chr3_3:52015472-52015491 | Msa0457310:CDS | 50.0% | |
| TGGAACCAGATGCACCAGAA+GGG | + | chr3_3:52015473-52015492 | Msa0457310:CDS | 50.0% | |
| CGACCGTTGTATGCTTCTAC+TGG | + | chr3_3:52015528-52015547 | Msa0457310:CDS | 50.0% | |
| GATGCTGATGGAGTCAAAGG+TGG | - | chr3_3:52015660-52015679 | None:intergenic | 50.0% | |
| TTCTCGGCATCTGAAGGGTT+GGG | - | chr3_3:52015737-52015756 | None:intergenic | 50.0% | |
| TTTCTCGGCATCTGAAGGGT+TGG | - | chr3_3:52015738-52015757 | None:intergenic | 50.0% | |
| !! | GCTCTGGCTTTGCTTTGAGA+AGG | - | chr3_3:52016012-52016031 | None:intergenic | 50.0% |
| ATGGCAACTGAGGTAGCAGA+AGG | - | chr3_3:52016077-52016096 | None:intergenic | 50.0% | |
| TTCTGCTACCTCAGTTGCCA+TGG | + | chr3_3:52016076-52016095 | Msa0457310:CDS | 50.0% | |
| AGAATGCTCCATGGCAACTG+AGG | - | chr3_3:52016087-52016106 | None:intergenic | 50.0% | |
| ATTGAGTTCATTGCCGCGGA+TGG | - | chr3_3:52016153-52016172 | None:intergenic | 50.0% | |
| TGGAAGGAGGGTTGGATCGA+AGG | + | chr3_3:52014729-52014748 | Msa0457310:CDS | 55.0% | |
| GTGGAGCAGCAACACGATGT+AGG | + | chr3_3:52015120-52015139 | Msa0457310:CDS | 55.0% | |
| GTGTCCATTTGTTCACCCGG+GGG | + | chr3_3:52015287-52015306 | Msa0457310:CDS | 55.0% | |
| CTTTCCGAAACTCGGGGCAA+GGG | - | chr3_3:52015359-52015378 | None:intergenic | 55.0% | |
| GCAAACCCTTCTGGTGCATC+TGG | - | chr3_3:52015481-52015500 | None:intergenic | 55.0% | |
| TACAACGGTCGAAGCTCCTC+TGG | - | chr3_3:52015519-52015538 | None:intergenic | 55.0% | |
| GATGGAGTCAAAGGTGGCGT+TGG | - | chr3_3:52015654-52015673 | None:intergenic | 55.0% | |
| TCCATCAGCATCATCGCCTG+TGG | + | chr3_3:52015668-52015687 | Msa0457310:CDS | 55.0% | |
| CTGAATCTGAGTCTGCCACG+TGG | - | chr3_3:52015700-52015719 | None:intergenic | 55.0% | |
| ACAGAACCGCGTCGGGATTA+CGG | - | chr3_3:52016358-52016377 | None:intergenic | 55.0% | |
| TGGCAAAGACAGAACCGCGT+CGG | - | chr3_3:52016366-52016385 | None:intergenic | 55.0% | |
| TGGAAGGAGGGTTGGATCGA+AGG | + | chr3_3:52014729-52014748 | Msa0457310:CDS | 55.0% | |
| GTGGAGCAGCAACACGATGT+AGG | + | chr3_3:52015120-52015139 | Msa0457310:CDS | 55.0% | |
| GTGTCCATTTGTTCACCCGG+GGG | + | chr3_3:52015287-52015306 | Msa0457310:CDS | 55.0% | |
| CTTTCCGAAACTCGGGGCAA+GGG | - | chr3_3:52015359-52015378 | None:intergenic | 55.0% | |
| GCAAACCCTTCTGGTGCATC+TGG | - | chr3_3:52015481-52015500 | None:intergenic | 55.0% | |
| TACAACGGTCGAAGCTCCTC+TGG | - | chr3_3:52015519-52015538 | None:intergenic | 55.0% | |
| GATGGAGTCAAAGGTGGCGT+TGG | - | chr3_3:52015654-52015673 | None:intergenic | 55.0% | |
| TCCATCAGCATCATCGCCTG+TGG | + | chr3_3:52015668-52015687 | Msa0457310:CDS | 55.0% | |
| CTGAATCTGAGTCTGCCACG+TGG | - | chr3_3:52015700-52015719 | None:intergenic | 55.0% | |
| ACAGAACCGCGTCGGGATTA+CGG | - | chr3_3:52016358-52016377 | None:intergenic | 55.0% | |
| TGGCAAAGACAGAACCGCGT+CGG | - | chr3_3:52016366-52016385 | None:intergenic | 55.0% | |
| ! | ACCGAGAGTGCGGCTCAGAT+AGG | + | chr3_3:52014851-52014870 | Msa0457310:CDS | 60.0% |
| CCCTATCTGAGCCGCACTCT+CGG | - | chr3_3:52014855-52014874 | None:intergenic | 60.0% | |
| ! | CCGAGAGTGCGGCTCAGATA+GGG | + | chr3_3:52014852-52014871 | Msa0457310:CDS | 60.0% |
| TTCACCCGGGGGAAAACGCA+AGG | + | chr3_3:52015298-52015317 | Msa0457310:CDS | 60.0% | |
| AAACTCGGGGCAAGGGACAC+AGG | - | chr3_3:52015352-52015371 | None:intergenic | 60.0% | |
| GTGTCCCTTGCCCCGAGTTT+CGG | + | chr3_3:52015352-52015371 | Msa0457310:CDS | 60.0% | |
| CCTTTCCGAAACTCGGGGCA+AGG | - | chr3_3:52015360-52015379 | None:intergenic | 60.0% | |
| CCTTGCCCCGAGTTTCGGAA+AGG | + | chr3_3:52015357-52015376 | Msa0457310:CDS | 60.0% | |
| GCCACAGGCGATGATGCTGA+TGG | - | chr3_3:52015672-52015691 | None:intergenic | 60.0% | |
| TCAGCATCATCGCCTGTGGC+TGG | + | chr3_3:52015672-52015691 | Msa0457310:CDS | 60.0% | |
| GGCAAAGACAGAACCGCGTC+GGG | - | chr3_3:52016365-52016384 | None:intergenic | 60.0% | |
| ! | ACCGAGAGTGCGGCTCAGAT+AGG | + | chr3_3:52014851-52014870 | Msa0457310:CDS | 60.0% |
| CCCTATCTGAGCCGCACTCT+CGG | - | chr3_3:52014855-52014874 | None:intergenic | 60.0% | |
| ! | CCGAGAGTGCGGCTCAGATA+GGG | + | chr3_3:52014852-52014871 | Msa0457310:CDS | 60.0% |
| TTCACCCGGGGGAAAACGCA+AGG | + | chr3_3:52015298-52015317 | Msa0457310:CDS | 60.0% | |
| AAACTCGGGGCAAGGGACAC+AGG | - | chr3_3:52015352-52015371 | None:intergenic | 60.0% | |
| GTGTCCCTTGCCCCGAGTTT+CGG | + | chr3_3:52015352-52015371 | Msa0457310:CDS | 60.0% | |
| CCTTTCCGAAACTCGGGGCA+AGG | - | chr3_3:52015360-52015379 | None:intergenic | 60.0% | |
| CCTTGCCCCGAGTTTCGGAA+AGG | + | chr3_3:52015357-52015376 | Msa0457310:CDS | 60.0% | |
| GCCACAGGCGATGATGCTGA+TGG | - | chr3_3:52015672-52015691 | None:intergenic | 60.0% | |
| TCAGCATCATCGCCTGTGGC+TGG | + | chr3_3:52015672-52015691 | Msa0457310:CDS | 60.0% | |
| GGCAAAGACAGAACCGCGTC+GGG | - | chr3_3:52016365-52016384 | None:intergenic | 60.0% | |
| !! | ACGCAAGGCGCCGTGATCCA+AGG | + | chr3_3:52015313-52015332 | Msa0457310:CDS | 65.0% |
| TGCCACGTGGTTCCAGCCAC+AGG | - | chr3_3:52015687-52015706 | None:intergenic | 65.0% | |
| TCTGGTTGGGGCTCGCCTGA+TGG | + | chr3_3:52016113-52016132 | Msa0457310:CDS | 65.0% | |
| GCAGTGCCGTAATCCCGACG+CGG | + | chr3_3:52016349-52016368 | Msa0457310:CDS | 65.0% | |
| !! | ACGCAAGGCGCCGTGATCCA+AGG | + | chr3_3:52015313-52015332 | Msa0457310:CDS | 65.0% |
| TGCCACGTGGTTCCAGCCAC+AGG | - | chr3_3:52015687-52015706 | None:intergenic | 65.0% | |
| TCTGGTTGGGGCTCGCCTGA+TGG | + | chr3_3:52016113-52016132 | Msa0457310:CDS | 65.0% | |
| GCAGTGCCGTAATCCCGACG+CGG | + | chr3_3:52016349-52016368 | Msa0457310:CDS | 65.0% | |
| ! | GGCGCCTTGCGTTTTCCCCC+GGG | - | chr3_3:52015305-52015324 | None:intergenic | 70.0% |
| ! | CGGCGCCTTGCGTTTTCCCC+CGG | - | chr3_3:52015306-52015325 | None:intergenic | 70.0% |
| CGCCTGTGGCTGGAACCACG+TGG | + | chr3_3:52015682-52015701 | Msa0457310:CDS | 70.0% | |
| ! | GGCGCCTTGCGTTTTCCCCC+GGG | - | chr3_3:52015305-52015324 | None:intergenic | 70.0% |
| ! | CGGCGCCTTGCGTTTTCCCC+CGG | - | chr3_3:52015306-52015325 | None:intergenic | 70.0% |
| CGCCTGTGGCTGGAACCACG+TGG | + | chr3_3:52015682-52015701 | Msa0457310:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 52014541 | 52016409 | 52014541 | ID=Msa0457310;Name=Msa0457310 |
| chr3_3 | mRNA | 52014541 | 52016409 | 52014541 | ID=Msa0457310-mRNA-1;Parent=Msa0457310;Name=Msa0457310-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|-1|0|1|-1|1|1|0|622 |
| chr3_3 | exon | 52014541 | 52016409 | 52014541 | ID=Msa0457310-mRNA-1:exon:9989;Parent=Msa0457310-mRNA-1 |
| chr3_3 | CDS | 52014541 | 52016409 | 52014541 | ID=Msa0457310-mRNA-1:cds;Parent=Msa0457310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
